Query 029609
Match_columns 190
No_of_seqs 183 out of 1277
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 01:57:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l7q_A Putative translation in 100.0 2.5E-38 8.4E-43 240.1 15.7 123 65-187 2-124 (125)
2 3r0p_A L-PSP putative endoribo 100.0 3.3E-38 1.1E-42 239.9 15.9 124 64-187 4-127 (127)
3 2dyy_A UPF0076 protein PH0854; 100.0 3.3E-38 1.1E-42 239.6 15.1 124 65-188 3-126 (126)
4 3v4d_A Aminoacrylate peracid r 100.0 8.3E-38 2.8E-42 239.9 16.4 126 64-189 9-134 (134)
5 1qah_A Perchloric acid soluble 100.0 6.8E-38 2.3E-42 241.0 15.9 126 64-189 5-130 (136)
6 2b33_A Protein synthesis inhib 100.0 7.5E-38 2.6E-42 242.1 15.6 128 62-189 12-139 (140)
7 1x25_A Hypothetical UPF0076 pr 100.0 9.4E-38 3.2E-42 237.8 15.8 124 65-188 5-128 (128)
8 3quw_A Protein MMF1; chorismat 100.0 1.2E-37 4E-42 244.4 16.0 125 64-189 29-153 (153)
9 3k0t_A Endoribonuclease L-PSP, 100.0 9.4E-38 3.2E-42 242.4 15.0 132 55-187 10-142 (143)
10 2cvl_A TTHA0137, protein trans 100.0 2.2E-37 7.4E-42 234.5 16.2 122 66-188 3-124 (124)
11 1jd1_A Hypothetical 13.9 kDa p 100.0 1.8E-37 6.3E-42 236.5 15.8 125 64-189 5-129 (129)
12 1qd9_A Purine regulatory prote 100.0 3.4E-37 1.2E-41 233.5 15.8 122 66-188 3-124 (124)
13 3m1x_A Putative endoribonuclea 100.0 2.3E-37 7.9E-42 241.5 14.8 124 64-187 25-148 (148)
14 1qu9_A YJGF protein; structura 100.0 2.7E-37 9.1E-42 235.2 13.1 123 65-188 3-128 (128)
15 2cwj_A Putative endonuclease; 100.0 3.6E-37 1.2E-41 232.9 11.5 120 70-189 2-121 (123)
16 1xrg_A Putative translation in 100.0 1.5E-36 5E-41 238.8 15.4 123 65-187 34-156 (156)
17 3vcz_A Endoribonuclease L-PSP; 100.0 1.3E-36 4.4E-41 238.5 12.5 127 61-188 23-153 (153)
18 3lme_A Possible translation in 100.0 6.7E-36 2.3E-40 230.5 13.5 124 64-188 3-129 (138)
19 3lyb_A Putative endoribonuclea 100.0 1.7E-35 5.7E-40 234.8 14.9 121 69-189 4-151 (165)
20 1pf5_A Hypothetical protein YJ 100.0 1.9E-34 6.5E-39 220.2 16.2 122 65-189 5-130 (131)
21 3i7t_A RV2704, putative unchar 100.0 1.1E-34 3.8E-39 226.5 11.0 119 64-190 4-123 (149)
22 2ig8_A Hypothetical protein PA 100.0 4.9E-34 1.7E-38 221.2 13.3 116 73-189 14-136 (144)
23 2otm_A Hypothetical protein; s 100.0 2.9E-34 9.8E-39 225.2 11.6 133 55-187 2-154 (154)
24 3i3f_A Hypothetical protein; s 100.0 1.8E-33 6.2E-38 217.5 14.7 121 64-188 15-140 (141)
25 3d01_A Uncharacterized protein 100.0 3.1E-34 1.1E-38 227.4 10.2 134 55-188 10-164 (165)
26 3kjj_A NMB1025 protein; YJGF p 100.0 4.6E-33 1.6E-37 212.3 15.4 108 75-189 16-124 (128)
27 2ewc_A Conserved hypothetical 100.0 1.6E-32 5.4E-37 208.6 13.9 112 71-189 6-122 (126)
28 3k12_A Uncharacterized protein 100.0 2.1E-32 7E-37 206.9 13.5 107 76-188 8-115 (122)
29 3gtz_A Putative translation in 100.0 1.1E-31 3.7E-36 203.5 14.6 104 77-188 12-117 (124)
30 3q71_A Poly [ADP-ribose] polym 28.5 77 0.0026 25.1 4.8 52 109-161 166-218 (221)
31 1xho_A Chorismate mutase; sout 27.6 1.7E+02 0.0059 21.9 6.3 43 108-150 44-89 (148)
32 1spv_A Putative polyprotein/ph 27.1 74 0.0025 24.2 4.4 48 108-159 129-176 (184)
33 2kjw_A TS9, 30S ribosomal prot 26.0 64 0.0022 22.3 3.4 25 110-134 58-82 (96)
34 2x47_A Macro domain-containing 24.6 1.1E+02 0.0036 24.5 5.0 44 113-159 190-233 (235)
35 3r8n_F 30S ribosomal protein S 24.1 33 0.0011 23.7 1.7 28 107-134 12-39 (100)
36 1dbf_A Protein (chorismate mut 23.7 2.2E+02 0.0074 20.8 6.2 50 116-167 24-76 (127)
37 4gni_A Putative heat shock pro 23.3 1.2E+02 0.0041 25.3 5.4 51 109-161 320-371 (409)
38 1xhj_A Nitrogen fixation prote 21.7 82 0.0028 21.4 3.3 55 106-160 5-72 (88)
No 1
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=100.00 E-value=2.5e-38 Score=240.11 Aligned_cols=123 Identities=52% Similarity=0.801 Sum_probs=119.0
Q ss_pred hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 144 (190)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~ 144 (190)
+.++++++|+|.|+|||++++|+++|+|||+|+|+.+|+++++|+++|++++|+||+++|+++|++++||+|+++|++|+
T Consensus 2 ~~i~~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~ 81 (125)
T 3l7q_A 2 KKIHTDKAPAAIGPYVQGKIVGNLLFASGQVPLSPETGQVIGTTIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDI 81 (125)
T ss_dssp CEECCTTSCCCCSSCBSEEEETTEEEEEEECSBCTTTCSBCCSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESCG
T ss_pred ceEcCCCCCCCCCCCCCEEEECCEEEEeccCCcCCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCH
Confidence 46889999999999999999999999999999999789888999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 145 KDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 145 ~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
+||+.+|++|.+||++++|+||+++|..||+|++||||++|++
T Consensus 82 ~~~~~~n~v~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~v 124 (125)
T 3l7q_A 82 DDFVPFNEVYATAFKSDFPARSAVEVARLPKDVKIEIEVIAEL 124 (125)
T ss_dssp GGHHHHHHHHHTTCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999975
No 2
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=100.00 E-value=3.3e-38 Score=239.87 Aligned_cols=124 Identities=38% Similarity=0.628 Sum_probs=119.7
Q ss_pred hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecC
Q 029609 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD 143 (190)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d 143 (190)
++.++++++|++.|+|||++++|+++|+|||+|+|+++|++..+|+++|++++|+||+++|+++|++++||+|+++|++|
T Consensus 4 ~~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d 83 (127)
T 3r0p_A 4 KAIIHSDNAPAAIGTYSQAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRDIVKLNVYLTD 83 (127)
T ss_dssp CEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTSSBCSSCHHHHHHHHHHHHHHHHHHTTSCGGGEEEEEEEESC
T ss_pred ceEeCCCCCCCCCCCCCCeEEECCEEEEeccCCcCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEEcC
Confidence 45689999999999999999999999999999999988988889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 144 LKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 144 ~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
++||+.+|++|.+||++++|+||+++|..||+|++||||++|++
T Consensus 84 ~~~~~~~~~v~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~ 127 (127)
T 3r0p_A 84 LANFPIVNEVMGQYFQAPYPARAAIGINQLPRASLIEADGIMVI 127 (127)
T ss_dssp GGGHHHHHHHHHHHCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEC
Confidence 99999999999999999999999999999999999999999975
No 3
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.3e-38 Score=239.62 Aligned_cols=124 Identities=47% Similarity=0.775 Sum_probs=118.2
Q ss_pred hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 144 (190)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~ 144 (190)
+.++++++|.+.|+|||++++|+++|+|||+|+|+++|++..+|+++|++++|+||+++|+++|++++||+|+++|++|+
T Consensus 3 ~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~ 82 (126)
T 2dyy_A 3 EVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDM 82 (126)
T ss_dssp EEECCTTSCCCCSSCBSEEEETTEEEEEEECSBCTTTCSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECC-
T ss_pred ceecCCCCCCCCCCcccEEEECCEEEEeeeCCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCH
Confidence 45789999999999999999999999999999999889887899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 145 KDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 145 ~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
+||+.+|++|.+||++++|+||+++|..||++++||||++|+++
T Consensus 83 ~~~~~~n~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 126 (126)
T 2dyy_A 83 NDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126 (126)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEECSCCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEeC
Confidence 99999999999999998999999999999999999999999874
No 4
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=100.00 E-value=8.3e-38 Score=239.91 Aligned_cols=126 Identities=31% Similarity=0.553 Sum_probs=114.4
Q ss_pred hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecC
Q 029609 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD 143 (190)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d 143 (190)
++.++++++|++.|+||+++++|+++|+|||+|+|++++.+.++|+++|++++|+||+++|+++|++++||+|+++|++|
T Consensus 9 ~~~i~~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~~~~~~~~d~~~Q~~~~l~nl~~~L~~aG~~l~~vvk~~vyl~d 88 (134)
T 3v4d_A 9 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITD 88 (134)
T ss_dssp CEEECCCC------CCCSEEEETTEEEEEEECCBCTTSCBSSTTCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESC
T ss_pred ceEECCCCCCCCCCCcCCEEEECCEEEEeccCccCCCCCEECCccHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEECC
Confidence 45689999999999999999999999999999999988877779999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEecC
Q 029609 144 LKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 189 (190)
Q Consensus 144 ~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p~ 189 (190)
++||+.+|++|.+||++++|+||+++|..||+|++||||++|++|+
T Consensus 89 ~~~f~~~n~v~~~~f~~~~Part~v~v~~l~~~~~VEIe~iA~~~~ 134 (134)
T 3v4d_A 89 WKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK 134 (134)
T ss_dssp GGGHHHHHHHHHHHCCSSCCEEEEEECBCSSTTCCEEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEccccCCCCEEEEEEEEEeCC
Confidence 9999999999999999999999999999889999999999999874
No 5
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=100.00 E-value=6.8e-38 Score=241.04 Aligned_cols=126 Identities=52% Similarity=0.870 Sum_probs=121.0
Q ss_pred hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecC
Q 029609 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD 143 (190)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d 143 (190)
++.++++++|++.|+|||++++|+++|+|||+|+|+++|++.++|+++|++++|+||+++|+++|++++||+|+++|++|
T Consensus 5 ~~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~vvk~~vyl~d 84 (136)
T 1qah_A 5 RKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLAD 84 (136)
T ss_dssp EEEECCTTSCCCSSSCCSEEEETTEEEEEEECCBCTTTCSBCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESC
T ss_pred eeEecCCCCCCCCCCCCCEEEECCEEEEeeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcc
Confidence 34588999999999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEecC
Q 029609 144 LKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 189 (190)
Q Consensus 144 ~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p~ 189 (190)
++||+.+|++|.+||++++|+||+++|..||++++||||++|++++
T Consensus 85 ~~d~~~~n~~~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~~~ 130 (136)
T 1qah_A 85 INDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEAIAVQGP 130 (136)
T ss_dssp GGGHHHHHHHHHTTCCSSCCEEEEEECSCCGGGCSEEEEEEEECSC
T ss_pred CccHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999875
No 6
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=100.00 E-value=7.5e-38 Score=242.14 Aligned_cols=128 Identities=45% Similarity=0.732 Sum_probs=122.2
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEe
Q 029609 62 NLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILL 141 (190)
Q Consensus 62 ~~~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl 141 (190)
.+++.++++++|.+.|+||+++++|+++|+|||+|+|+++|++..+|+++|++++|+||+++|+++|++++||+|+++|+
T Consensus 12 ~~~~~~~~~~~p~~~g~ys~av~~g~~lfvSGq~~~d~~tG~~~~~d~~~Qt~~~l~ni~~~L~~aG~~l~~Vvk~tvyl 91 (140)
T 2b33_A 12 HMKRFVETDKAPKAIGPYSQAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKDVVKVTVFT 91 (140)
T ss_dssp -CCEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTCCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred hhcceecCCCCCCCCCCcCCEEEECCEEEEEeeCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEE
Confidence 45677889999999999999999999999999999999888887899999999999999999999999999999999999
Q ss_pred cCcCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEecC
Q 029609 142 ADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 189 (190)
Q Consensus 142 ~d~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p~ 189 (190)
+|++||+.+|++|.+||++++|+||+++|..||++++||||++|++++
T Consensus 92 ~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~lVEIe~iA~~~~ 139 (140)
T 2b33_A 92 TSMDYFQRVNEVYSRYFGDHRPARSFVAVAQLPRNVEIEIEAIAVKEG 139 (140)
T ss_dssp SCGGGHHHHHHHHHHHHTTTCCEEEEEECSCCGGGCSEEEEEEEECCC
T ss_pred CCchhHHHHHHHHHHHCCCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999874
No 7
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=100.00 E-value=9.4e-38 Score=237.80 Aligned_cols=124 Identities=45% Similarity=0.682 Sum_probs=118.8
Q ss_pred hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 144 (190)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~ 144 (190)
+.++++++|.+.|+|||++++|+++|+|||+|+|+++|++.++|+++|++++|+||+++|+++|++++||+|+++|++|+
T Consensus 5 ~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~ 84 (128)
T 1x25_A 5 ETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDM 84 (128)
T ss_dssp EEECCTTSCCCCSSCCSEEEETTEEEEEEECSEETTTTEECSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCG
T ss_pred eEecCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEECCH
Confidence 35789999999999999999999999999999999889888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 145 KDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 145 ~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
+||+.+|++|.+||++++|+||+++|..||++++||||++|+++
T Consensus 85 ~~~~~~n~~~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~~ 128 (128)
T 1x25_A 85 NMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICSKG 128 (128)
T ss_dssp GGHHHHHHHHHHHCCSSCCEEEEEECSCCGGGCSEEEEEEEEC-
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcccCCCCCEEEEEEEEEeC
Confidence 99999999999999999999999999999999999999999874
No 8
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=244.39 Aligned_cols=125 Identities=42% Similarity=0.657 Sum_probs=119.7
Q ss_pred hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecC
Q 029609 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD 143 (190)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d 143 (190)
++.++++++|++.|+||+++++|+++|+|||+|+|++ |++.++|+++|++++|+||+++|+++|++++||+|+++|++|
T Consensus 29 ~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~-g~~~~gdi~~Qt~~~l~Ni~a~L~~aG~~l~dVVkvtvyl~d 107 (153)
T 3quw_A 29 LTPVSTKLAPPAAASYSQAMKANNFVYVSGQIPYTPD-NKPVQGSISEKAEQVFQNVKNILAESNSSLDNIVKVNVFLAD 107 (153)
T ss_dssp EEEECCTTSCCCCTTCCSEEEETTEEEEEEECSBCTT-SCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESC
T ss_pred eEEEcCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC-CCCcCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECC
Confidence 5679999999999999999999999999999999985 677789999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEecC
Q 029609 144 LKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 189 (190)
Q Consensus 144 ~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p~ 189 (190)
++||+.+|++|.+||++++|+||+++|..||+|++||||++|++|+
T Consensus 108 ~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~lVEIeaiA~~pn 153 (153)
T 3quw_A 108 MKNFAEFNSVYAKHFHTHKPARSCVGVASLPLNVDLEMEVIAVEKN 153 (153)
T ss_dssp GGGHHHHHHHHHHHSSSCCCEEEEEECSCCGGGCSEEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999985
No 9
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=100.00 E-value=9.4e-38 Score=242.39 Aligned_cols=132 Identities=45% Similarity=0.693 Sum_probs=118.6
Q ss_pred cccchhhhh-hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccc
Q 029609 55 LSTSAVSNL-KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSS 133 (190)
Q Consensus 55 ~~~~~~~~~-~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~d 133 (190)
|+..-+..| ++.++++++|++.|+|||++++|+++|+|||+|+|+++|++.. |+++|++++|+||+++|+++|++++|
T Consensus 10 ~~~~~~~~m~~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~~g~~~~-d~~~Qt~~~l~ni~aiL~~aG~~l~~ 88 (143)
T 3k0t_A 10 MDIEFVDLEGKTVITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVE-GIEAQITQVFENLKSVAQAAGGSFKD 88 (143)
T ss_dssp ----------CEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTCSBCS-SHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred cceeeeccCceeEEcCCCCCCCCCCcCcEEEECCEEEEeeeCCcCCCCCcCCc-CHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 333333344 5679999999999999999999999999999999998888765 99999999999999999999999999
Q ss_pred eeEEEEEecCcCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 134 VVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 134 Vvk~~vyl~d~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
|+|+++|++|++||+.+|++|.+||++++|+||+++|..||+|++||||++|++
T Consensus 89 Vvk~tvyl~d~~df~~~n~v~~~~f~~~~PArt~v~V~~Lp~~~lVEIe~iA~~ 142 (143)
T 3k0t_A 89 IVKLNIFLTDLGHFAKVNEIMGSYFSQPYPARAAIGVAALPRGAQVEMDAILVI 142 (143)
T ss_dssp EEEEEEEESCGGGHHHHHHHHTTTCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred EEEEEEEEcChHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999986
No 10
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=100.00 E-value=2.2e-37 Score=234.50 Aligned_cols=122 Identities=52% Similarity=0.839 Sum_probs=117.3
Q ss_pred hhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcC
Q 029609 66 AVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLK 145 (190)
Q Consensus 66 ~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~ 145 (190)
.++++++|++.|+|||++++|+++|+|||+|+|+ +|++.++|+++|++++|+||+++|+++|++++||+|+++|++|++
T Consensus 3 ~i~~~~~p~~~g~ys~av~~g~~~~vSGq~~~~~-~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~ 81 (124)
T 2cvl_A 3 AVKTDRAPAAIGPYAQAVKAGGFVFVSGQIPLAP-DGSLVEGDIRVQTERVMENLKAVLEAAGSGLSRVVQTTCFLADME 81 (124)
T ss_dssp EECCTTSCCCCSSCBSEEEETTEEEEEEECSBCT-TSCBCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGG
T ss_pred eecCCCCCCCCCCcCCEEEECCEEEEeeeCCcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChH
Confidence 4789999999999999999999999999999998 688878999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 146 DFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 146 d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
||+.+|++|.+||++++|+||+++|..||+|++||||++|+++
T Consensus 82 ~~~~~~~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 124 (124)
T 2cvl_A 82 DFPGFNEVYARYFTPPYPARATVAVKALPRGVRVEVACVALAE 124 (124)
T ss_dssp GHHHHHHHHHHHCCSSCCEEEEEECSCCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEcccCCCCCEEEEEEEEEeC
Confidence 9999999999999988999999999999999999999999874
No 11
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=100.00 E-value=1.8e-37 Score=236.45 Aligned_cols=125 Identities=45% Similarity=0.722 Sum_probs=118.9
Q ss_pred hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecC
Q 029609 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD 143 (190)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d 143 (190)
++.++++++|++.|+||+++++|+++|+|||+|+|++ |++..+|+++|++++|+||+++|+++|++++||+|+++|++|
T Consensus 5 ~~~i~~~~~~~~~~~ys~av~~g~~l~vSGq~~~~~~-g~~~~g~~~~Q~~~~l~ni~~~L~~aG~~~~~vvk~~vyl~d 83 (129)
T 1jd1_A 5 LTPVICESAPAAAASYSHAMKVNNLIFLSGQIPVTPD-NKLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLAD 83 (129)
T ss_dssp EEEECCTTSCCCSSSCCSEEEETTEEEEEEECSBCTT-SCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESC
T ss_pred ceEecCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC-CCCcCCCHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEcC
Confidence 4468899999999999999999999999999999986 777789999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEecC
Q 029609 144 LKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 189 (190)
Q Consensus 144 ~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p~ 189 (190)
++||+.+|++|.+||++++|+||+++|..||+|++||||++|++++
T Consensus 84 ~~d~~~~n~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~~ 129 (129)
T 1jd1_A 84 INHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIAAERD 129 (129)
T ss_dssp GGGHHHHHHHHHHHSSSSCCEEEEEECSBCGGGCSEEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEEeccCCCCCEEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999874
No 12
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=100.00 E-value=3.4e-37 Score=233.50 Aligned_cols=122 Identities=48% Similarity=0.796 Sum_probs=117.0
Q ss_pred hhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcC
Q 029609 66 AVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLK 145 (190)
Q Consensus 66 ~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~ 145 (190)
.++++++|.+.|+|||++++|+++|+|||+|+|+ +|++..+|+++|++++|+||+++|+++|++++||+|+++|++|++
T Consensus 3 ~i~~~~~p~~~g~ys~av~~g~~v~vSGq~~~~~-~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~ 81 (124)
T 1qd9_A 3 AVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP-SGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADME 81 (124)
T ss_dssp EECCTTSCCCCSSCBSEEEETTEEEECCBCSBCT-TSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGG
T ss_pred EecCCCCCCCCCCCCCEEEECCEEEEeeeCCcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChH
Confidence 4788999999999999999999999999999998 788877999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 146 DFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 146 d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
||+.+|++|.+||++++|+||+++|..||++++||||++|++.
T Consensus 82 ~~~~~n~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 124 (124)
T 1qd9_A 82 QFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK 124 (124)
T ss_dssp GHHHHHHHHHHHSSSCCCEEEEEECSBCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEEcccCCCCCEEEEEEEEEeC
Confidence 9999999999999988999999999999999999999999863
No 13
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=100.00 E-value=2.3e-37 Score=241.46 Aligned_cols=124 Identities=49% Similarity=0.736 Sum_probs=119.5
Q ss_pred hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecC
Q 029609 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD 143 (190)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d 143 (190)
++.++++++|++.|+||+++++|+++|+|||+|+|+.+|++.++|+++|++++|+||+++|+++|++++||+|+++|++|
T Consensus 25 ~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~~G~~~~~d~~~Q~~~~l~nl~aiL~~aG~~l~~Vvk~tvyl~d 104 (148)
T 3m1x_A 25 LTVVASPLAPEAVGAYSQAIICNGXVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLAD 104 (148)
T ss_dssp EEEECCSSSCCCCSSCCSEEEETTEEEEEEEESEETTTTEESCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESC
T ss_pred cEEECCCCCCCCCCCCCcEEEECCEEEEEeeCCcCCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECC
Confidence 35688999999999999999999999999999999978998888999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 144 LKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 144 ~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
++||+.+|++|.+||++++|+||+++|..||+|++||||++|++
T Consensus 105 ~~df~~~n~v~~~~fg~~~PArt~V~V~~L~~~~lVEIe~iA~l 148 (148)
T 3m1x_A 105 IKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 148 (148)
T ss_dssp GGGHHHHHHHHHHHHTTCCCEEEEEECSCCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCEEEEEEEEEC
Confidence 99999999999999999999999999999999999999999975
No 14
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=100.00 E-value=2.7e-37 Score=235.19 Aligned_cols=123 Identities=39% Similarity=0.679 Sum_probs=116.9
Q ss_pred hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 144 (190)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~ 144 (190)
+.++++++|.+.|+|||++++|+++|+|||+|+|+++|++ ++|+++|++++|+||+++|+++|++++||+|+++|++|+
T Consensus 3 ~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~d~~~g~~-~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~ 81 (128)
T 1qu9_A 3 KTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEV-PADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDL 81 (128)
T ss_dssp EEECCTTSCCCCSSCBSEEECSSEEEECCBCSCCTTTCCC-CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCG
T ss_pred ccccCCCCCCCCCCccceEEECCEEEEeccCCccCCCCCC-CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCH
Confidence 3578899999999999999999999999999999988886 699999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCC---CCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 145 KDFKTVNEIYAKYFPSP---APARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 145 ~d~~~~~~v~~~~f~~~---~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
+||+.+|++|.+||+++ +|+||+++|..||++++||||++|+++
T Consensus 82 ~~~~~~n~~~~~~f~~~~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 128 (128)
T 1qu9_A 82 NDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR 128 (128)
T ss_dssp GGHHHHHHHHHHHHHHTTCCCCEEEEEECSBCGGGCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCEEEEEhhhCCCCCEEEEEEEEEeC
Confidence 99999999999999965 899999999999999999999999875
No 15
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=100.00 E-value=3.6e-37 Score=232.95 Aligned_cols=120 Identities=37% Similarity=0.669 Sum_probs=112.7
Q ss_pred CCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHH
Q 029609 70 NKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKT 149 (190)
Q Consensus 70 ~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~ 149 (190)
+.+|++.|+||+++++|+++|+|||+|+|+++|++.++|+++|++++|+||+++|+++|++++||+|+++|++|++||+.
T Consensus 2 ~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~df~~ 81 (123)
T 2cwj_A 2 ETAPKPVGPYSQAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVYITDISRFSE 81 (123)
T ss_dssp --CCCCCSSCCSCEEETTEEEEEEECCEEGGGTEECSSSSHHHHHHHHHHHHHHHHHTSCCGGGCCEEEEEESSSSHHHH
T ss_pred CCCCCCCCCcccEEEECCEEEEeccCCCCCCCCcCCCccHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEcCHHHHHH
Confidence 34788999999999999999999999999877888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEecC
Q 029609 150 VNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 189 (190)
Q Consensus 150 ~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p~ 189 (190)
+|++|.+||++++|+||+++|..||++++||||++|++|+
T Consensus 82 ~n~~~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~~~ 121 (123)
T 2cwj_A 82 FNEVYREYFNRPYPARAVVGVAALPLGAPLEVEAVLYTCR 121 (123)
T ss_dssp HHHHHHTTCCSSCCEEEEEECSCCGGGCSEEEEEECBC--
T ss_pred HHHHHHHHcCCCCCcEEEEEhhcCCCCCEEEEEEEEEeCC
Confidence 9999999999889999999999999999999999999874
No 16
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=100.00 E-value=1.5e-36 Score=238.83 Aligned_cols=123 Identities=47% Similarity=0.786 Sum_probs=118.4
Q ss_pred hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 144 (190)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~ 144 (190)
+.++++++|++.|+||+++++|+++|+|||+|+|+++|++..+|+++|++++|+||+++|+++|++++||+|+++|++|+
T Consensus 34 ~~i~~~~~p~~~g~YS~av~~g~~lfvSGq~~~d~~tG~l~~~d~~~Qt~~~l~ni~~iL~~aG~~l~~Vvk~tvyl~d~ 113 (156)
T 1xrg_A 34 EVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDM 113 (156)
T ss_dssp EEECCTTSCCCCSSCCSEEEETTEEEECCBCCBCTTTSSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCG
T ss_pred eEEcCCCCCCCCCCCCCEEEECCEEEEEeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEECCh
Confidence 45889999999999999999999999999999999889888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 145 KDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 145 ~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
+||+.+|++|.+||++++|+||+++|..||++++||||++|++
T Consensus 114 ~df~~~n~v~~~~f~~~~PArt~V~V~~Lp~~~lVEIe~iA~~ 156 (156)
T 1xrg_A 114 DSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 156 (156)
T ss_dssp GGHHHHHHHHHTTCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEEcCCCCCCCeEEEEEEEEC
Confidence 9999999999999999899999999999999999999999974
No 17
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=100.00 E-value=1.3e-36 Score=238.47 Aligned_cols=127 Identities=39% Similarity=0.661 Sum_probs=118.2
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029609 61 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 140 (190)
Q Consensus 61 ~~~~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vy 140 (190)
..|++.++++++|++.|+||+++++|+++|+|||+|+|+++|.+ ++|+++|++++|+||+++|+++|++++||+|+++|
T Consensus 23 ~~M~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~~g~v-~~d~~~Qt~~~l~nl~a~L~~aG~~l~~Vvk~tvy 101 (153)
T 3vcz_A 23 NAMTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEV-PADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVF 101 (153)
T ss_dssp ---CEEECCTTSCCCCSSCBSEEECSSEEEECCBCSCCTTTCCC-CSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEE
T ss_pred cccceEEcCCCCCCCCCCcCCEEEECCEEEEeeecccCCCCCee-CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 34567799999999999999999999999999999999988875 68999999999999999999999999999999999
Q ss_pred ecCcCCHHHHHHHHHHhCCCC----CCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 141 LADLKDFKTVNEIYAKYFPSP----APARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 141 l~d~~d~~~~~~v~~~~f~~~----~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
++|++||+.+|++|.+||++. +|+||+++|..||.+++||||++|+++
T Consensus 102 l~d~~df~~~n~v~~~~f~~~~~~~~PArt~V~V~~L~~~~lVEIeaiA~~~ 153 (153)
T 3vcz_A 102 VKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVRK 153 (153)
T ss_dssp ESCGGGHHHHHHHHHHHHHHTTCSSCCEEEEEECSBCGGGCSEEEEEEEEC-
T ss_pred EcCchHHHHHHHHHHHHhCCCCCCCCCCEEEEEeccCCCCCEEEEEEEEEeC
Confidence 999999999999999999965 999999999999999999999999864
No 18
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0
Probab=100.00 E-value=6.7e-36 Score=230.50 Aligned_cols=124 Identities=25% Similarity=0.426 Sum_probs=115.8
Q ss_pred hhhhcCCC-CCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEec
Q 029609 64 KEAVVTNK-APAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLA 142 (190)
Q Consensus 64 ~~~i~~~~-~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~ 142 (190)
++.++|+. +|++.|+||+++++|+++|+|||+|+|+++|++..++ ++|++++|+||+++|+++|++++||+|+++|++
T Consensus 3 ~~~inp~~~~p~p~g~ys~av~~g~~lfvSGq~~~d~~~g~~~~~~-~~Q~~~~l~ni~~~L~~aG~~l~~Vvk~~vyl~ 81 (138)
T 3lme_A 3 LKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGD-EARIRRMFDNMLAAAEAAGATKADAVRLTVFVT 81 (138)
T ss_dssp CEECCCCTTSCCCCSSCBSEEEETTEEEEEEEESBCTTTCCBCSSH-HHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEES
T ss_pred ceEeCCCCCCCCCCCCCCCEEEECCEEEEeccCCcCCCCCcCCcCH-HHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEC
Confidence 35688777 9999999999999999999999999999888876555 799999999999999999999999999999999
Q ss_pred CcCCHH-HHHHHHHHhCCC-CCCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 143 DLKDFK-TVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 143 d~~d~~-~~~~v~~~~f~~-~~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
|++||. .+|++|.+||++ ++|+||+++|..||++++||||++|+++
T Consensus 82 d~~d~~~~~n~v~~~~f~~~~~PArt~v~V~~L~~~~lVEIe~iA~~~ 129 (138)
T 3lme_A 82 DVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAP 129 (138)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCBEEEEECSCCGGGCSEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcCCCCCEEEEEEEEEEc
Confidence 999996 799999999995 8999999999999999999999999986
No 19
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=100.00 E-value=1.7e-35 Score=234.76 Aligned_cols=121 Identities=26% Similarity=0.459 Sum_probs=105.5
Q ss_pred CCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCc-------------------------cHHHHHHHHHHHHHHH
Q 029609 69 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSD-------------------------TIEDQTEQVLKNIGEI 123 (190)
Q Consensus 69 ~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~-------------------------d~~~Q~~~~l~nl~~i 123 (190)
++++|+|.|+||+++++|++||+|||+|+|+++|++..+ |+++|++++|+||+++
T Consensus 4 ~~~ap~p~g~Ys~av~~G~~lfvSGq~~~~~~~g~l~~g~~~~~~~~~~~~g~~G~~g~~~~~~d~~~Qt~~~l~Ni~ai 83 (165)
T 3lyb_A 4 EAGAGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSWYVLESIRRT 83 (165)
T ss_dssp -----------CCEEEETTEEEECCBCCEETTTTEECCSGGGSCHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCEEEECCEEEEeeeCCcCCCCCeEccCcccccccccccccccccccccccccCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999988887655 9999999999999999
Q ss_pred HHHcCCCccceeEEEEEecCcCCHHHHHHHHHHhCCCCCCeeEEEEcCCC-C-CCceEEEEEEEEecC
Q 029609 124 LKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAAL-P-LDARVEIECIAALPN 189 (190)
Q Consensus 124 L~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~~f~~~~Part~v~V~~L-~-~~~lVEIe~iA~~p~ 189 (190)
|+++|++++||+|+++|++|++||+.+|++|.+||++++|+||+++|..| | ++++||||++|++|+
T Consensus 84 L~~aG~~l~~Vvkvtvyl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~p~~~~lVEIe~iA~~~~ 151 (165)
T 3lyb_A 84 VASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVSTVVQVSEMLPDATVLIEVEATVWLPP 151 (165)
T ss_dssp HHTTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCSSCCCEEEEEECSCCSSCTTCCEEEEEEEECC-
T ss_pred HHHhcCChhHhEEEEEEECCHHHhHHHHHHHHHHcCCCCCceEEEEccccCCCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999 8 999999999999874
No 20
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=100.00 E-value=1.9e-34 Score=220.21 Aligned_cols=122 Identities=26% Similarity=0.419 Sum_probs=113.7
Q ss_pred hhhcCCCC--CCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEec
Q 029609 65 EAVVTNKA--PAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLA 142 (190)
Q Consensus 65 ~~i~~~~~--p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~ 142 (190)
+.++++.. +++.++||+++++|+++|+|||+|+|++ |++ .+|+++|++++|+||+++|+++|++++||+|+++|++
T Consensus 5 ~~inp~~~~~~~~~~~ys~av~~g~~l~vSGq~~~~~~-g~~-~~d~~~Q~~~~l~ni~~~L~~aG~~~~~vvk~~vyl~ 82 (131)
T 1pf5_A 5 TAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSRED-GTP-EPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHT 82 (131)
T ss_dssp EEECCSSCCTTTTTTTCCSEEEETTEEEEEEECCBCTT-SCB-CSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEES
T ss_pred eeeCCCCccCCCCCCCcCCEEEECCEEEEcccCCcCCC-Ccc-CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEc
Confidence 45778776 4578899999999999999999999975 766 5899999999999999999999999999999999999
Q ss_pred Cc-CCHHHHHHHHHHhCC-CCCCeeEEEEcCCCCCCceEEEEEEEEecC
Q 029609 143 DL-KDFKTVNEIYAKYFP-SPAPARATYQVAALPLDARVEIECIAALPN 189 (190)
Q Consensus 143 d~-~d~~~~~~v~~~~f~-~~~Part~v~V~~L~~~~lVEIe~iA~~p~ 189 (190)
|+ +||+.+|++|.+||+ +++|+||+++|..|| +++||||++|++|+
T Consensus 83 d~~~~~~~~~~~~~~~f~~~~~Part~v~V~~L~-~~~VEIe~iA~~~~ 130 (131)
T 1pf5_A 83 DPENQFEDIMTVKNEIFSAPPYPNWTAVGVTWLA-GFDFEIKVIARIPE 130 (131)
T ss_dssp SGGGTHHHHHHHHHHHSCSSSCCCCEEEECSCST-TCSEEEEEEEECCC
T ss_pred CcHHhHHHHHHHHHHHcCCCCCCCeEEEeecccC-CccEEEEEEEEeCC
Confidence 99 999999999999998 589999999999999 99999999999985
No 21
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.1e-34 Score=226.51 Aligned_cols=119 Identities=31% Similarity=0.394 Sum_probs=111.7
Q ss_pred hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecC
Q 029609 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD 143 (190)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d 143 (190)
++.+++++.|++.++||+++++|++||+|||+++| +|+++|++++|+||+++|+++|++++||+|+++|++|
T Consensus 4 r~~i~~~~~~~~~~~YS~av~~G~~lfvSGq~~~~--------~d~~~Qt~~~l~ni~aiL~~aG~~l~dVvk~tvyl~d 75 (149)
T 3i7t_A 4 RTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG--------DDIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTD 75 (149)
T ss_dssp EEEECCCCHHHHHHTCCSEEEETTEEEEEEEECCS--------SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESC
T ss_pred ceEecCCCCCCCCCCcCCEEEECCEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHHHccCCHhHEEEEEEEECC
Confidence 34588999999999999999999999999999986 6899999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCCeeEEEEcCCCC-CCceEEEEEEEEecCC
Q 029609 144 LKDFKTVNEIYAKYFPSPAPARATYQVAALP-LDARVEIECIAALPNA 190 (190)
Q Consensus 144 ~~d~~~~~~v~~~~f~~~~Part~v~V~~L~-~~~lVEIe~iA~~p~a 190 (190)
++||+.+|++|.+||++++|+||+++|..|+ ++++||||++|+++++
T Consensus 76 ~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~~lVEIe~iA~~~~~ 123 (149)
T 3i7t_A 76 ISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSA 123 (149)
T ss_dssp GGGHHHHHHHHHHHHTTTCCBCCEEECSCCSSTTCCEEEEEEEEC---
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeccCCCCCCEEEEEEEEEeCCc
Confidence 9999999999999999999999999999998 8999999999999864
No 22
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4.9e-34 Score=221.23 Aligned_cols=116 Identities=19% Similarity=0.268 Sum_probs=108.8
Q ss_pred CCCCCCcceEEEECCEEEEeeeccccCCCCccc-Cc---cHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHH
Q 029609 73 PAALGPYSQAIKANNLVFVSGVLGLVPETGKFV-SD---TIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFK 148 (190)
Q Consensus 73 p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~-~~---d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~ 148 (190)
|++.++|||++++|+++|+|||+|+|++ |++. ++ |+++|++++|+||+++|+++|++++||+|+++|++|++||+
T Consensus 14 ~~~~~~ys~av~~g~~l~vSGq~~~~~~-g~~~~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~vvk~~vyl~d~~df~ 92 (144)
T 2ig8_A 14 DLPDASWSNALLVGEELVMSGMTAHPAT-RQAAERGAALDAHAQALVVLGKVKALLEAAGGHVGNLYKLNVYVTRIADKD 92 (144)
T ss_dssp CCTTCSSCSEEEETTEEEECCBCCTTHH-HHHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHH
T ss_pred CCCCCCcCCEEEECCEEEEeeeCCcCCC-CcEecCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECChHHHH
Confidence 7889999999999999999999999975 5554 57 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC--CCCCCeeEEEEcCCCC-CCceEEEEEEEEecC
Q 029609 149 TVNEIYAKYF--PSPAPARATYQVAALP-LDARVEIECIAALPN 189 (190)
Q Consensus 149 ~~~~v~~~~f--~~~~Part~v~V~~L~-~~~lVEIe~iA~~p~ 189 (190)
.+|++|.+|| +.++|+||+++|..|| ++++||||++|++++
T Consensus 93 ~~~~v~~~~f~~~~~~PArt~v~V~~L~~p~~~VEIe~iA~~~~ 136 (144)
T 2ig8_A 93 AIGRARQEFFAGQGTFPASTLVEVSGLVFPELLVEIDAWARLDI 136 (144)
T ss_dssp HHHHHHHHHTTTCSSCCEEEEEECSBCSSTTCCEEEEEEEETTC
T ss_pred HHHHHHHHHhcCCCCCCCEEEEEecccCCCCCEEEEEEEEEeCC
Confidence 9999999999 5789999999999998 599999999999874
No 23
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1
Probab=100.00 E-value=2.9e-34 Score=225.25 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=118.0
Q ss_pred cccchhhhhhhh-hcCCCCCCCCCCcceEEEECCEEEEeeeccccCC----CCcccC----ccHHHHHHHHHHHHHHHHH
Q 029609 55 LSTSAVSNLKEA-VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPE----TGKFVS----DTIEDQTEQVLKNIGEILK 125 (190)
Q Consensus 55 ~~~~~~~~~~~~-i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~----~g~~~~----~d~~~Q~~~~l~nl~~iL~ 125 (190)
|..+.++++.++ ++++..|++.|+|||++++|+++|+|||+|+|++ +|++.. +|+++|++++|+|++++|+
T Consensus 2 ~~~~~~~~l~~l~i~~~~~~~~~g~Ys~av~~g~~v~vSGQ~~~~~~~~~~~G~~~~~~~~~~~~~Qa~~~~~Ni~a~L~ 81 (154)
T 2otm_A 2 MMNTPESRLVAAGLELPEVAAALGNYEPYSIVGSQLMTSGQFPYLQGKLLYQGQLGADYTVSEGYAACRLATLNAIAQLK 81 (154)
T ss_dssp -CCCHHHHHHHTTCCCCCCCCCSSSSCSEEEETTEEEECCBCCEETTEECCBSCBTTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHcCCCCCCCCCCCCCCcCEEEECCEEEEeccCCCCCCcccccccccCccCchhHHHHHHHHHHHHHHHHH
Confidence 444567888777 8999999999999999999999999999999986 466532 5799999999999999999
Q ss_pred HcCCCccc---eeEEEEEecCcCCHHHH-------HHHHHHhCCC-CCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 126 ASGADYSS---VVKTTILLADLKDFKTV-------NEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 126 ~~G~~l~d---Vvk~~vyl~d~~d~~~~-------~~v~~~~f~~-~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
++|++++| |||+++|++|++||..+ +++|.+||++ ++|+||+++|..||++++||||++|.+
T Consensus 82 ~ag~~l~~~~~VVk~tvyv~d~~df~~~~~v~~~~~~~~~~~fg~~~~PArt~v~V~~Lp~~~~VEIEaiA~~ 154 (154)
T 2otm_A 82 QACGELSRIKQIYRLEGVLNVHQSCIEHPKALDGASDLLLEIFGEAGRHSRMIWTNPVMPLNSLCLVYLFAEL 154 (154)
T ss_dssp HHHSSGGGCCEEEEEEEEECBCTTCCCHHHHHHHHHHHHHHHHGGGGCCEEEEEECSSCGGGBSEEEEEEEEC
T ss_pred HcCCCccccCcEEEEEEEECCcHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEccccCCCCEEEEEEEEEC
Confidence 99999886 99999999999887664 5999999995 699999999999999999999999974
No 24
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia}
Probab=100.00 E-value=1.8e-33 Score=217.53 Aligned_cols=121 Identities=24% Similarity=0.361 Sum_probs=112.3
Q ss_pred hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecC
Q 029609 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD 143 (190)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d 143 (190)
.+.++++..+++ ++|||++++|+++|+|||+|+|+ +|++.. |+++|++++|+||+++|+++|++++||+|+++|++|
T Consensus 15 ~~~~~p~~~~~~-~~ys~av~~g~~vfvSGq~~~d~-~g~~~~-~~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~~vyl~d 91 (141)
T 3i3f_A 15 PTFLVCPDVVKF-ENVGQIAVVNGMVYLGGSVGIDK-SGTLHK-GLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLST 91 (141)
T ss_dssp CEEECCTTSCCC-TTCBCEEEETTEEEECCBCSBCT-TSCBCS-HHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEET
T ss_pred eeEECCCCCCCC-CCcCcEEEECCEEEEeeeCCcCC-CCCCCc-CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcC
Confidence 356778888877 99999999999999999999998 687754 599999999999999999999999999999999999
Q ss_pred cC---CHHHHHHHHHHhC--CCCCCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 144 LK---DFKTVNEIYAKYF--PSPAPARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 144 ~~---d~~~~~~v~~~~f--~~~~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
++ ||+.+|++|.+|| ++++|+||+++ ..||++++||||++|++-
T Consensus 92 ~~~~~df~~~n~v~~~~f~~~~~~Part~v~-~~L~~~~lVEIe~iA~~~ 140 (141)
T 3i3f_A 92 SLSDSEEARFNELYREVFCVPATRPCRCCVR-AQLQEGLLVEVVNVVAAQ 140 (141)
T ss_dssp TCCHHHHHHHHHHHHHHSCCGGGCCEEEEEE-EBCSTTCSEEEEEEEEEC
T ss_pred CccccCHHHHHHHHHHHhCCCCCCCcEEEEh-hhCCCCCEEEEEEEEEEc
Confidence 99 9999999999999 57899999999 999999999999999874
No 25
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=3.1e-34 Score=227.38 Aligned_cols=134 Identities=29% Similarity=0.352 Sum_probs=116.9
Q ss_pred cccchhhhhhhh-hcCCCCCCCCCCcceEEEECCEEEEeeeccccCC----CCcccC----ccHHHHHHHHHHHHHHHHH
Q 029609 55 LSTSAVSNLKEA-VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPE----TGKFVS----DTIEDQTEQVLKNIGEILK 125 (190)
Q Consensus 55 ~~~~~~~~~~~~-i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~----~g~~~~----~d~~~Q~~~~l~nl~~iL~ 125 (190)
|..+.++++++. ++++..|++.|+|||++++|+++|+|||+|+|++ +|++.. +|+++|++++|+||+++|+
T Consensus 10 ~~~~~e~~l~~~~i~~~~~p~p~g~Ys~av~~g~~lfvSGq~~~~~~~~~~~G~~~~~~~~~d~~~Qa~~~l~ni~~~L~ 89 (165)
T 3d01_A 10 MSDVIEGRLKELGFTLPVAAAPAANYVPFTISGNLLYVSGQLPMESGKIAVTGLVGRDVDVASAQRAAELCAVNILAQVK 89 (165)
T ss_dssp HHHHHHHHHHHTTCCCCCC-----CBCSEEEETTEEEEEEECCEETTEECSBSCBTTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHhcCcCCCCCCCCCCCccCEEEECCEEEEeeECCCCCCCccccccccCccCcccHHHHHHHHHHHHHHHHH
Confidence 444567777666 9999999999999999999999999999999986 577754 6999999999999999999
Q ss_pred HcC-CCcc---ceeEEEEEecCcCCHHH----HH---HHHHHhCCC-CCCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 126 ASG-ADYS---SVVKTTILLADLKDFKT----VN---EIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 126 ~~G-~~l~---dVvk~~vyl~d~~d~~~----~~---~v~~~~f~~-~~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
++| ++++ ||+|+++|++|++||+. +| ++|.+||++ ++|+||+++|..||++++||||++|++.
T Consensus 90 ~ag~~~l~~v~~Vvk~tvyv~d~~df~~~~~v~ngas~~~~~~f~~~~~PArt~V~V~~Lp~~~~VEIe~iA~~~ 164 (165)
T 3d01_A 90 AALNGDLSKIRRVIKLNGFVASVPEFVEQHLVINGASNLIATVLGEPGRHARAAVGMASLPFNASVEIDAIVEID 164 (165)
T ss_dssp HHTTTCGGGCCEEEEEEEEEEBCTTCCCHHHHHHHHHHHHHHHHCGGGCBEEEEEEESBCGGGBSEEEEEEEEC-
T ss_pred HhCCCChhhhCCEEEEEEEECCHHHhhHHHHHhhhHHHHHHHHhCCCCCCceEEEEcccCCCCCEEEEEEEEEEe
Confidence 999 9999 99999999999999988 68 999999996 7999999999999999999999999874
No 26
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=100.00 E-value=4.6e-33 Score=212.29 Aligned_cols=108 Identities=31% Similarity=0.473 Sum_probs=102.9
Q ss_pred CCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHH
Q 029609 75 ALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIY 154 (190)
Q Consensus 75 ~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~ 154 (190)
+.++||+++++|+++|+|||+|+| ++|+++|++++|+||+++|+++|++++||+|+++|++|++||+.+|++|
T Consensus 16 ~~~~ys~av~~g~~lfvSGq~~~d-------~~d~~~Q~~~~l~nl~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~ 88 (128)
T 3kjj_A 16 TTPRYSEAVGANGLIFLSGMVPEN-------GETAAEQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVW 88 (128)
T ss_dssp ECSSCEEEEEETTEEEECCBCCSS-------CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHH
T ss_pred CCCCcCcEEEECCEEEEeecCCCC-------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHH
Confidence 457899999999999999999988 4789999999999999999999999999999999999999999999999
Q ss_pred HHhCCC-CCCeeEEEEcCCCCCCceEEEEEEEEecC
Q 029609 155 AKYFPS-PAPARATYQVAALPLDARVEIECIAALPN 189 (190)
Q Consensus 155 ~~~f~~-~~Part~v~V~~L~~~~lVEIe~iA~~p~ 189 (190)
.+||++ ++|+||+++|..||+|++||||++|++|+
T Consensus 89 ~~~f~~~~~PArt~v~v~ll~~~~lVEIe~iA~~~d 124 (128)
T 3kjj_A 89 DAWVAAGRTPARACVEARLARPEWRVEIKITAVKRD 124 (128)
T ss_dssp HHHSCTTCCCEEEEEECBCSSTTCCEEEEEEEECCC
T ss_pred HHHhCCCCCCCEEEEEccccCCCCEEEEEEEEEecc
Confidence 999995 79999999998889999999999999986
No 27
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=100.00 E-value=1.6e-32 Score=208.65 Aligned_cols=112 Identities=16% Similarity=0.238 Sum_probs=105.1
Q ss_pred CCCCCCC-CcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHH
Q 029609 71 KAPAALG-PYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKT 149 (190)
Q Consensus 71 ~~p~~~g-~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~ 149 (190)
+.|.+.+ +||+++++|+++|+|||.|. +++|+++|++++|+||+++|+++|++++||+|+++|++|++||+.
T Consensus 6 ~~~~~~~~~ys~av~~g~~l~vSGq~~~-------~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~Vvk~~vyl~d~~df~~ 78 (126)
T 2ewc_A 6 RYDVNEDRGHTGLVEAGDFYYLNYCVGN-------VGQDIESQINGAFDEMERRLALVGLTLDAVVQMDCLFRDVWNIPV 78 (126)
T ss_dssp EEEEETTTTEEEEEEETTEEEEEEECCS-------TTSCHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESSGGGHHH
T ss_pred cCCCCCCCCcccEEEECCEEEEeCcCCC-------CCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECChhHHHH
Confidence 3566677 89999999999999999874 268999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCeeEEEEcCCCC----CCceEEEEEEEEecC
Q 029609 150 VNEIYAKYFPSPAPARATYQVAALP----LDARVEIECIAALPN 189 (190)
Q Consensus 150 ~~~v~~~~f~~~~Part~v~V~~L~----~~~lVEIe~iA~~p~ 189 (190)
+|++|.+||++++|+||+++|..|| +|++||||++|++|+
T Consensus 79 ~n~v~~~~f~~~~Part~v~v~~l~~~~~~~~lVEIe~iA~~~~ 122 (126)
T 2ewc_A 79 MEKMIKERFNGRYPARKSIQTEFAHHGGPQGLLFQVDGVAYSKH 122 (126)
T ss_dssp HHHHHHHHSTTCCCEEEEEECCCSSCCSTTCCCEEEEEEEECCC
T ss_pred HHHHHHHHcCCCCCcEEEEEccCccCCCCCCcEEEEEEEEEecc
Confidence 9999999999999999999999899 999999999999874
No 28
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.1e-32 Score=206.90 Aligned_cols=107 Identities=32% Similarity=0.508 Sum_probs=101.7
Q ss_pred CCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHH
Q 029609 76 LGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYA 155 (190)
Q Consensus 76 ~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~ 155 (190)
.++||+++++|+++|+|||+|+|+ ++|+++|++++|+||+++|+++|++++||+|+++|++|++||+.+|++|.
T Consensus 8 ~~~ys~av~~g~~vfvSGq~~~d~------~~d~~~Q~~~~l~ni~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~ 81 (122)
T 3k12_A 8 VKRRAEMALHGNTVYIGGQVADDP------SGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWD 81 (122)
T ss_dssp EEEEEEEEEETTEEEEEEECCSST------TSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHT
T ss_pred CCCcCCEEEECCEEEEeeccCCCC------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHHH
Confidence 468999999999999999999986 47999999999999999999999999999999999999999999999999
Q ss_pred HhCCC-CCCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 156 KYFPS-PAPARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 156 ~~f~~-~~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
+||++ ++|+||++++..||+|++||||++|.+.
T Consensus 82 ~~f~~~~~Part~v~~~ll~~~~lVEIe~iA~~~ 115 (122)
T 3k12_A 82 QWFPEGRAPTRACSLAELIDPRWRVEMIVVAARE 115 (122)
T ss_dssp TTSCTTCCCEEEEEECBCSSTTCSEEEEEEEECC
T ss_pred HHhCCCCCCCEEEEEcccCCCCCEEEEEEEEEec
Confidence 99994 8999999998878999999999999875
No 29
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=99.98 E-value=1.1e-31 Score=203.53 Aligned_cols=104 Identities=30% Similarity=0.447 Sum_probs=98.5
Q ss_pred CCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHHH
Q 029609 77 GPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAK 156 (190)
Q Consensus 77 g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~ 156 (190)
++||+++++|+++|+|||+|+| ++|+++|++++|+||+++|+++|++++||+|+++|++|++||+.+|++|.+
T Consensus 12 ~~ys~av~~g~~lfvSGq~~~d-------~~d~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~ 84 (124)
T 3gtz_A 12 DRWSDVVIYNNTLWYTGVPENL-------DADAFEQTANTLAQIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDA 84 (124)
T ss_dssp SSCEEEEEETTEEEEEECCSCT-------TSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHH
T ss_pred CCcCCEEEECCEEEEeccCCCC-------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHH
Confidence 6899999999999999999988 478999999999999999999999999999999999999999999999999
Q ss_pred hCC-CCCCeeEEEEcCCCC-CCceEEEEEEEEec
Q 029609 157 YFP-SPAPARATYQVAALP-LDARVEIECIAALP 188 (190)
Q Consensus 157 ~f~-~~~Part~v~V~~L~-~~~lVEIe~iA~~p 188 (190)
||+ +++|+||+++ ..|+ +|++||||++|.+.
T Consensus 85 ~f~~~~~Part~v~-~~L~~p~~lVEIe~iA~~~ 117 (124)
T 3gtz_A 85 WVVAGHAPVRCTVQ-AGLMNPKYKVEIKIVAAVE 117 (124)
T ss_dssp HSCTTCCCEEEEEE-CEESSTTCSEEEEEEEEC-
T ss_pred HhCCCCCCcEEEEe-cccCCCCCEEEEEEEEEec
Confidence 999 6899999999 7787 59999999999875
No 30
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=28.50 E-value=77 Score=25.15 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CCccceeEEEEEecCcCCHHHHHHHHHHhCCCC
Q 029609 109 IEDQTEQVLKNIGEILKASG-ADYSSVVKTTILLADLKDFKTVNEIYAKYFPSP 161 (190)
Q Consensus 109 ~~~Q~~~~l~nl~~iL~~~G-~~l~dVvk~~vyl~d~~d~~~~~~v~~~~f~~~ 161 (190)
.++-++.+++.+...|+... .++++ |.+.+|=.|...+..+.+.++++|++.
T Consensus 166 ~~~aA~i~~~~v~~fl~~~~~~~l~~-V~fv~f~~d~~~~~~f~~~l~~r~~~~ 218 (221)
T 3q71_A 166 KNIFAELIISEVFKFSSKNQLKTLQE-VHFLLHPSDHENIQAFSDEFARRANGN 218 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSCCE-EEEEECTTCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEEeCCCHHHHHHHHHHHHHHccCC
Confidence 34445555566666666553 23332 233333334455688888999988854
No 31
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=27.61 E-value=1.7e+02 Score=21.89 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=30.4
Q ss_pred cHHHHHHH-HHHHHHHHHHHcCCCccceeEEEEEec-Cc-CCHHHH
Q 029609 108 TIEDQTEQ-VLKNIGEILKASGADYSSVVKTTILLA-DL-KDFKTV 150 (190)
Q Consensus 108 d~~~Q~~~-~l~nl~~iL~~~G~~l~dVvk~~vyl~-d~-~d~~~~ 150 (190)
|-++.+.. +-+=++++++..+.+.+||+.+..-+| |+ ..|+..
T Consensus 44 Nt~e~I~~At~ELl~eii~~N~l~~eDIvSv~FTvT~DL~A~FPA~ 89 (148)
T 1xho_A 44 NTADEIVAETQKLLKEMAEKNGLEEDDIISIIFTVTKDLDAAFPAI 89 (148)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECTTCCSSCTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCccCccChHH
Confidence 33344333 334467889999999999999999988 55 357664
No 32
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=27.15 E-value=74 Score=24.21 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHHHhCC
Q 029609 108 TIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP 159 (190)
Q Consensus 108 d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~~f~ 159 (190)
+.++-++.+++.++..|+... ++-++.+.+-|.+++..+.+.+.++|+
T Consensus 129 p~~~aa~i~~~~v~~~l~~~~----~~~~V~~v~~~~~~~~~~~~~l~~~~~ 176 (184)
T 1spv_A 129 PRAAAAEIAVKTVSEFITRHA----LPEQVYFVCYDEENAHLYERLLTQQGD 176 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC----SSSEEEEEESSHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 344445555555666665532 233555666677888889999998888
No 33
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=26.04 E-value=64 Score=22.31 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccce
Q 029609 110 EDQTEQVLKNIGEILKASGADYSSV 134 (190)
Q Consensus 110 ~~Q~~~~l~nl~~iL~~~G~~l~dV 134 (190)
++|.+..+++++.+|++.|+....+
T Consensus 58 ee~~~~~ve~~~~iI~~~gG~i~~v 82 (96)
T 2kjw_A 58 QSQLALEKEIIQRALENYGARVEKV 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6899999999999999999876543
No 34
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=24.64 E-value=1.1e+02 Score=24.48 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHHHhCC
Q 029609 113 TEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP 159 (190)
Q Consensus 113 ~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~~f~ 159 (190)
++.+++.++..|+.... ++-++.+.+-+.+|++.+.+.+.+||+
T Consensus 190 a~i~~~~v~~fl~~~~~---~l~~V~fv~f~~~~~~~y~~~l~~~fp 233 (235)
T 2x47_A 190 AEIVLATLREWLEQHKD---KVDRLIICVFLEKDEDIYRSRLPHYFP 233 (235)
T ss_dssp HHHHHHHHHHHHHHHGG---GCSEEEEEECSHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCC---CCCeEEEEECCHHHHHHHHHHHHHhcC
Confidence 33444444444443322 233455555677788889999999987
No 35
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=24.11 E-value=33 Score=23.67 Aligned_cols=28 Identities=4% Similarity=0.124 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCccce
Q 029609 107 DTIEDQTEQVLKNIGEILKASGADYSSV 134 (190)
Q Consensus 107 ~d~~~Q~~~~l~nl~~iL~~~G~~l~dV 134 (190)
.+..+|+..+++++..+|.+.|+...++
T Consensus 12 p~~~e~~~~~~~~~~~~i~~~gg~i~~~ 39 (100)
T 3r8n_F 12 PDQSEQVPGMIERYTAAITGAEGKIHRL 39 (100)
T ss_dssp GGGTTHHHHHHHHHHHHHHTTTCBCCCC
T ss_pred CCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3445799999999999999999865544
No 36
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=23.73 E-value=2.2e+02 Score=20.80 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCCccceeEEEEEec-Cc-CCHHHHHHHHHHhCC-CCCCeeEE
Q 029609 116 VLKNIGEILKASGADYSSVVKTTILLA-DL-KDFKTVNEIYAKYFP-SPAPARAT 167 (190)
Q Consensus 116 ~l~nl~~iL~~~G~~l~dVvk~~vyl~-d~-~d~~~~~~v~~~~f~-~~~Part~ 167 (190)
+-+=++++++..+.+.+||+++..-+| |+ +.|+..- .++..| +.-|-.-+
T Consensus 24 t~eLl~~i~~~N~l~~~dIvSv~FT~T~DL~a~FPA~a--aR~~~gw~~VpL~c~ 76 (127)
T 1dbf_A 24 TKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKA--VRELSGWQYVPVTCM 76 (127)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEECTTCCSSCTHHH--HHTSTTCTTSCEEEE
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEeCCccCccChHHH--HhccCCCCccchhhc
Confidence 334467889999999999999999988 55 3566643 124435 34454433
No 37
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=23.31 E-value=1.2e+02 Score=25.32 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccceeEEEEEec-CcCCHHHHHHHHHHhCCCC
Q 029609 109 IEDQTEQVLKNIGEILKASGADYSSVVKTTILLA-DLKDFKTVNEIYAKYFPSP 161 (190)
Q Consensus 109 ~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~-d~~d~~~~~~v~~~~f~~~ 161 (190)
++...+.+++.++..|+.+|...++|-. |+|+ .....+.+.+..+++|+..
T Consensus 320 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~--V~LvGG~s~~p~v~~~l~~~f~~~ 371 (409)
T 4gni_A 320 ARTVFEGFNRLVESAVKKAGLDPLDVDE--VIMSGGTSNTPRIAANFRYIFPES 371 (409)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCGGGCCE--EEEESGGGGCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCE--EEEECCccccHHHHHHHHHHcCCc
Confidence 3456777888889999999988777633 4444 5568899999999999853
No 38
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=21.73 E-value=82 Score=21.41 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=36.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHcCCCcc------ceeEEEEEecCcC----C---HHHHHHHHHHhCCC
Q 029609 106 SDTIEDQTEQVLKNIGEILKASGADYS------SVVKTTILLADLK----D---FKTVNEIYAKYFPS 160 (190)
Q Consensus 106 ~~d~~~Q~~~~l~nl~~iL~~~G~~l~------dVvk~~vyl~d~~----d---~~~~~~v~~~~f~~ 160 (190)
..+..++++.+++.|+-.|+..|++.+ .+|+++..=.+-. + -..+.+..++++++
T Consensus 5 ~~~~~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPe 72 (88)
T 1xhj_A 5 NPTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPG 72 (88)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCC
Confidence 457889999999999999999998653 2344433322221 1 22456677777753
Done!