BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029610
MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVET
GYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFG
KVRDEWMDKDLTTWIGANRFYPGIPDALKFASSRIYIVTTKQMLYYESLQELQYHLTEFM
VWELVQRWKC

High Scoring Gene Products

Symbol, full name Information P value
AT2G45990 protein from Arabidopsis thaliana 4.3e-70

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029610
        (190 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2050730 - symbol:AT2G45990 "AT2G45990" species...   710  4.3e-70   1


>TAIR|locus:2050730 [details] [associations]
            symbol:AT2G45990 "AT2G45990" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0010264 "myo-inositol
            hexakisphosphate biosynthetic process" evidence=RCA] GO:GO:0009570
            EMBL:CP002685 GenomeReviews:CT485783_GR Gene3D:3.40.50.1000
            InterPro:IPR023214 EMBL:AC005397 EMBL:AC004665 UniGene:At.64490
            EMBL:AY050790 EMBL:AY114058 EMBL:AK316848 IPI:IPI00540079
            PIR:T02448 RefSeq:NP_566060.1 RefSeq:NP_850443.1 UniGene:At.24763
            ProteinModelPortal:O82790 STRING:O82790 PaxDb:O82790 PRIDE:O82790
            DNASU:819207 EnsemblPlants:AT2G45990.1 EnsemblPlants:AT2G45990.2
            GeneID:819207 KEGG:ath:AT2G45990 TAIR:At2g45990 eggNOG:NOG07051
            HOGENOM:HOG000233205 InParanoid:O82790 OMA:LADWGYL PhylomeDB:O82790
            ProtClustDB:CLSN2688955 ArrayExpress:O82790 Genevestigator:O82790
            Uniprot:O82790
        Length = 268

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 132/169 (78%), Positives = 150/169 (88%)

Query:     1 MADLYALDFDGVLCDSCGESSLSAVKAAKVRWPGLFDGVDSVIEDWIVDQMHILRPVVET 60
             M DLYALDFDGVLCDSCGESSLSAVKAAKVRWP LF+GVDS +E+WIVDQMHI+RPVVET
Sbjct:     1 MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFEGVDSALEEWIVDQMHIVRPVVET 60

Query:    61 GYENXXXXXXXXEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFG 120
             GYEN        E ++PSIRKSSV+EGLTV+GILE+W+K KPVIME W E+RDALVDLFG
Sbjct:    61 GYENLLLVRLLLETKIPSIRKSSVAEGLTVDGILESWAKFKPVIMEAWDEDRDALVDLFG 120

Query:   121 KVRDEWMDKDLTTWIGANRFYPGIPDALKFASSRIYIVTTKQMLYYESL 169
             KVRD+W++KDLTTWIGANRFYPG+ DALKFASS+IYIVTTKQ  + E+L
Sbjct:   121 KVRDDWINKDLTTWIGANRFYPGVSDALKFASSKIYIVTTKQGRFAEAL 169


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      190       182   0.00098  109 3  11 22  0.42    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  189 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.85u 0.10s 15.95t   Elapsed:  00:00:01
  Total cpu time:  15.85u 0.10s 15.95t   Elapsed:  00:00:01
  Start:  Sat May 11 04:34:16 2013   End:  Sat May 11 04:34:17 2013

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