BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029611
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%), Gaps = 2/73 (2%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSWG++WGE GY+R++RNV G
Sbjct: 144 FQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGG- 202
Query: 63 LTGKCGIAMEASY 75
G+CGIA +ASY
Sbjct: 203 -VGQCGIAKKASY 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%), Gaps = 2/73 (2%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSWG++WGE GY+R++RNV G
Sbjct: 144 FQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGG- 202
Query: 63 LTGKCGIAMEASY 75
G+CGIA +ASY
Sbjct: 203 -VGQCGIAKKASY 214
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY SGIFTG C S +H +T VGYGTEN D+WIVKNSWG +WGE+GYIR ERN+
Sbjct: 143 FQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENP 202
Query: 63 LTGKCGIAMEASY 75
GKCGI ASY
Sbjct: 203 -DGKCGITRFASY 214
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 2 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
AF+ Y SGIFTG CGT++DH VT VGYGTE G DYWIVKNSW ++WGE GY+R+ RNV G
Sbjct: 143 AFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGG 202
Query: 62 TLTGKCGIAMEASY 75
G CGIA SY
Sbjct: 203 --AGTCGIATMPSY 214
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
FQ Y G+FTG CGT LDHGV VGYGT +G YW VKNSWG WGE GYIRMER ++
Sbjct: 144 FQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISD 203
Query: 62 TLTGKCGIAMEASY 75
G CGIAMEASY
Sbjct: 204 K-EGLCGIAMEASY 216
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Query: 2 AFQLYESGIFTGRCGTSLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
AF Y G+FTG CGT LDHGV VGYG E+G YW VKNSWG SWGE GYIR+E++ +
Sbjct: 148 AFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD-S 206
Query: 61 GTLTGKCGIAMEASY 75
G G CGIAMEASY
Sbjct: 207 GASGGLCGIAMEASY 221
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 2 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
AF+ Y SGIFTG CGT++DH + VGYGTE G DYWIVKNSW ++WGE GY+R+ RNV G
Sbjct: 143 AFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGG 202
Query: 62 TLTGKCGIAMEASY 75
G CGIA SY
Sbjct: 203 --AGTCGIATMPSY 214
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQ Y SGIFTG CGT+ +HGV VGYGT++G +YWIV+NSWG +WG GYI MERNVA +
Sbjct: 140 FQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASS 199
Query: 63 LTGKCGIAMEASY 75
G CGIA SY
Sbjct: 200 -AGLCGIAQLPSY 211
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY+SG+F G CGT LDH VTAVGYGT +G +Y I+KNSWG +WGE GY+R++R +G
Sbjct: 141 FQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQ-SGN 199
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 200 SQGTCGVYKSSYY 212
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 1 MAFQLYESGIFTGRCGTSLDHGVTAVGYGT--ENGADYWIVKNSWGSSWGEAGYIRMERN 58
M FQ Y G+F CGT LDHGV VGYGT E+ D+WI+KNSWG+ WG GY+ M +
Sbjct: 147 MPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMH 206
Query: 59 VAGTLTGKCGIAMEASY 75
G+CG+ ++AS+
Sbjct: 207 KGE--EGQCGLLLDASF 221
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 48/73 (65%), Gaps = 7/73 (9%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQ Y+ GIFTG CGT L+HGV VGYG DYWIV+NSWG WGE GY RM+R V G
Sbjct: 139 FQHYKGGIFTGPCGTKLNHGVVIVGYGK----DYWIVRNSWGRHWGEQGYTRMKR-VGG- 192
Query: 63 LTGKCGIAMEASY 75
G CGIA Y
Sbjct: 193 -CGLCGIARLPFY 204
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 5/74 (6%)
Query: 2 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
AFQ Y GIF G CGTS+DH V AVGYG DY ++KNSWG+ WGE GYIR++R +G
Sbjct: 140 AFQNYRGGIFAGPCGTSIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRG-SG 194
Query: 62 TLTGKCGIAMEASY 75
G CG+ ++ +
Sbjct: 195 NPQGACGVLSDSVF 208
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 49/73 (67%), Gaps = 7/73 (9%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQ Y SGIF+G CGT L+HGVT VGY A+YWIV+NSWG WGE GYIRM R V G
Sbjct: 139 FQQYSSGIFSGPCGTKLNHGVTIVGYQ----ANYWIVRNSWGRYWGEKGYIRMLR-VGG- 192
Query: 63 LTGKCGIAMEASY 75
G CGIA Y
Sbjct: 193 -CGLCGIARLPYY 204
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 49/73 (67%), Gaps = 7/73 (9%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQ Y+SGIF+G CGT L+HGV VGY DYWIV+NSWG WGE GYIRM+R V G
Sbjct: 139 FQHYKSGIFSGPCGTKLNHGVVIVGYWK----DYWIVRNSWGRYWGEQGYIRMKR-VGG- 192
Query: 63 LTGKCGIAMEASY 75
G CGIA Y
Sbjct: 193 -CGLCGIARLPYY 204
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 3 FQLYESGIFTGRC--GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
Q Y G+F + + L+HGV VGYG++NG DYWI+KNSWGS WGE+GY R RN
Sbjct: 256 LQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYG 315
Query: 61 GTLTGKCGIAMEASY 75
CGIA ASY
Sbjct: 316 NN----CGIATAASY 326
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 48/74 (64%), Gaps = 6/74 (8%)
Query: 3 FQLYESGIFTGRCGTSL--DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
F +Y SGI+ + + L +H V AVGYGT+ G DYWIVKNSWG SWGE GYIRM RN
Sbjct: 233 FMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRG 292
Query: 61 GTLTGKCGIAMEAS 74
CGIA AS
Sbjct: 293 NM----CGIASLAS 302
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 3 FQLYESGIFTG-RCGT--SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 59
F Y GI+ G C + ++H V VGYG+E+G DYWI KNSWG WG GYIR++RN
Sbjct: 147 FHFYSGGIYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRN- 205
Query: 60 AGTLTGKCGIAMEASY 75
G L G CG+ ASY
Sbjct: 206 TGNLLGVCGMNYFASY 221
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQ Y+ GI+ G CGT+ DH VTAVGY G Y ++KNSWG +WGE GYIR++R +G
Sbjct: 141 FQFYKGGIYEGPCGTNTDHAVTAVGY----GKTYLLLKNSWGPNWGEKGYIRIKR-ASGR 195
Query: 63 LTGKCGI 69
G CG+
Sbjct: 196 SKGTCGV 202
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R G
Sbjct: 141 FQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRG-TGN 195
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 196 SYGVCGLYTSSFY 208
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R G
Sbjct: 141 FQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRG-TGN 195
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 196 SYGVCGLYTSSFY 208
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R G
Sbjct: 141 FQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRG-TGN 195
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 196 SYGVCGLYTSSFY 208
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 242 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 301
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 302 ----NHCGIASFPSY 312
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 144 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 203
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 204 ----NHCGIASFPSY 214
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R G
Sbjct: 141 FQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRG-TGN 195
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 196 SYGVCGLYTSSFY 208
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R G
Sbjct: 141 FQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRG-TGN 195
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 196 SYGVCGLYTSSFY 208
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY GIF G CG +DH V AVGY G +Y ++KNSWG+ WGE GYIR++R G
Sbjct: 141 FQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRG-TGN 195
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 196 SYGVCGLYTSSFY 208
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 144 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKG 203
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 204 ----NHCGIASFPSY 214
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 144 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKG 203
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 204 ----NHCGIASFPSY 214
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 147 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 206
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 207 ----NHCGIASFPSY 217
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 144 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 203
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 204 ----NHCGIASFPSY 214
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 144 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 203
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 204 ----NHCGIASFPSY 214
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 144 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 203
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 204 ----NHCGIASFPSY 214
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 145 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 204
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 205 ----NHCGIASFPSY 215
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 144 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 203
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 204 ----NHCGIASFPSY 214
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 145 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 204
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 205 ----NHCGIASFPSY 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 146 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 205
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 206 ----NHCGIASFPSY 216
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 2 AFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVA 60
+F LY SG++ C +++HGV VGYG NG +YW+VKNSWG ++GE GYIRM RN
Sbjct: 145 SFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG 204
Query: 61 GTLTGKCGIAMEASY 75
CGIA SY
Sbjct: 205 ----NHCGIASFPSY 215
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY GIF G CG +DH V AVGY G +Y +++NSWG+ WGE GYIR++R G
Sbjct: 292 FQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIRNSWGTGWGENGYIRIKRG-TGN 346
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 347 SYGVCGLYTSSFY 359
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY+ GIF G CGT +DH VTAVGYG G Y ++KNSWG++WGE GYIR++R G
Sbjct: 141 FQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR-APGN 199
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 200 SPGVCGLYKSSYY 212
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 2 AFQLYESGIFTGR--CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 59
+FQ Y +G++ +L+H V AVGYG + G +WI+KNSWG SWG AGYI M RN
Sbjct: 141 SFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARN- 199
Query: 60 AGTLTGKCGIAMEASY 75
CGIA AS+
Sbjct: 200 ---KNNACGIANLASF 212
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY+ GIF G CGT ++H VTAVGYG G Y ++KNSWG++WGE GYIR++R G
Sbjct: 141 FQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR-APGN 199
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 200 SPGVCGLYKSSYY 212
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 2 AFQLYESGIFTGR--CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 59
+FQ Y G++ +L+H V AVGYG + G +WI+KNSWG SWG GYI M RN
Sbjct: 141 SFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARN- 199
Query: 60 AGTLTGKCGIAMEASY 75
CGIA AS+
Sbjct: 200 ---KNNACGIANLASF 212
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 2 AFQLYESGIFTGRC--GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 59
+FQ Y G++ +L+H V AVGYG + G +WI+KNSWG +WG GYI M RN
Sbjct: 240 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNK 299
Query: 60 AGTLTGKCGIAMEASY 75
CGIA AS+
Sbjct: 300 ----NNACGIANLASF 311
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 2 AFQLYESGIFTGRC--GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 59
+FQ Y G++ +L+H V AVGYG + G +WI+KNSWG +WG GYI M RN
Sbjct: 141 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN- 199
Query: 60 AGTLTGKCGIAMEASY 75
CGIA AS+
Sbjct: 200 ---KNNACGIANLASF 212
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 2 AFQLYESGIFTGRC--GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 59
+FQ Y G++ +L+H V AVGYG + G +WI+KNSWG +WG GYI M RN
Sbjct: 140 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN- 198
Query: 60 AGTLTGKCGIAMEASY 75
CGIA AS+
Sbjct: 199 ---KNNACGIANLASF 211
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 2 AFQLYESGIFTGRC--GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 59
+FQ Y G++ +L+H V AVGYG + G +WI+KNSWG +WG GYI M RN
Sbjct: 143 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN- 201
Query: 60 AGTLTGKCGIAMEASY 75
CGIA AS+
Sbjct: 202 ---KNNACGIANLASF 214
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 2 AFQLYESGIFTGRC--GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 59
+FQ Y G++ +L+H V AVGYG + G +WI+KNSWG +WG GYI M RN
Sbjct: 139 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN- 197
Query: 60 AGTLTGKCGIAMEASY 75
CGIA AS+
Sbjct: 198 ---KNNACGIANLASF 210
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 2 AFQLYESGIFTGRC--GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 59
+FQ Y G++ +L+H V AVGYG G +WI+KNSWG +WG GYI+M RN
Sbjct: 141 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARN- 199
Query: 60 AGTLTGKCGIAMEASY 75
CGIA AS+
Sbjct: 200 ---KNNACGIANLASF 212
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGAD----------YWIVKNSWGSSWGEAGY 52
F Y+ GIF G CG L+H V VG+G + + Y+I+KNSWG WGE G+
Sbjct: 155 FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGF 214
Query: 53 IRMERNVAGTLTGKCGIAMEA 73
I +E + +G L KCG+ +A
Sbjct: 215 INIETDESG-LMRKCGLGTDA 234
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGAD----------YWIVKNSWGSSWGEAGY 52
F Y+ GIF G CG L+H V VG+G + + Y+I+KNSWG WGE G+
Sbjct: 156 FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGF 215
Query: 53 IRMERNVAGTLTGKCGIAMEA 73
I +E + +G L KCG+ +A
Sbjct: 216 INIETDESG-LMRKCGLGTDA 235
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQLY+ GIF G CGT +D VTAVGYG G Y ++KNSWG++WGE GYIR++R G
Sbjct: 247 FQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR-APGN 305
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 306 SPGVCGLYKSSYY 318
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGT 62
FQ Y+ GIF G CGT +DH VTAVGYG G Y ++KNSWG WGE GYIR+ R +G
Sbjct: 141 FQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRR-ASGN 199
Query: 63 LTGKCGIAMEASY 75
G CG+ + Y
Sbjct: 200 SPGVCGVYRSSYY 212
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGT-SLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+FQ Y+SGI F C + +LDHGV VGYG E + + YW+VKNSWG WG GY++
Sbjct: 143 SFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVK- 201
Query: 56 ERNVAGTLTGKCGIAMEASY 75
+A CGIA ASY
Sbjct: 202 ---IAKDKNNHCGIATAASY 218
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGT-SLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+FQ Y+SGI F C + +LDHGV VGYG E + + YW+VKNSWG WG GY++
Sbjct: 143 SFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVK- 201
Query: 56 ERNVAGTLTGKCGIAMEASY 75
+A CGIA ASY
Sbjct: 202 ---IAKDKNNHCGIATAASY 218
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 3 FQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERN 58
F +Y GI++ + ++H V AVGYG ENG YWIVKNSWG WG GY +ER
Sbjct: 144 FLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERG 203
Query: 59 VAGTLTGKCGIAMEASY 75
CG+A ASY
Sbjct: 204 -----KNMCGLAACASY 215
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E +G YW+VKNSWG WG GY++M
Sbjct: 234 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKM 293
Query: 56 ERNVAGTLTGKCGIAMEASY 75
A CGIA ASY
Sbjct: 294 ----AKDRRNHCGIASAASY 309
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%)
Query: 2 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMER 57
+F Y GI T LDHGV VGY + YWI+KNSW + WGE GYIR+E+
Sbjct: 143 SFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEK 198
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E + YW+VKNSWG WG GY++M
Sbjct: 180 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 239
Query: 56 ERNVAGTLTGKCGIAMEASY 75
++ CGIA ASY
Sbjct: 240 AKD----RRNHCGIASAASY 255
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E + YW+VKNSWG WG GY++M
Sbjct: 238 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 297
Query: 56 ERNVAGTLTGKCGIAMEASY 75
A CGIA ASY
Sbjct: 298 ----AKDRRNHCGIASAASY 313
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 21 HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 74
H V VGYG ENG DYW+VKNSWG WG GY ++ RN CGIA AS
Sbjct: 278 HAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNA----NNHCGIAGVAS 327
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E + YW+VKNSWG WG GY++M
Sbjct: 143 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 202
Query: 56 ERNVAGTLTGKCGIAMEASY 75
++ CGIA ASY
Sbjct: 203 AKD----RRNHCGIASAASY 218
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E + YW+VKNSWG WG GY++M
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
Query: 56 ERNVAGTLTGKCGIAMEASY 75
++ CGIA ASY
Sbjct: 202 AKD----RRNHCGIASAASY 217
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E + YW+VKNSWG WG GY++M
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
Query: 56 ERNVAGTLTGKCGIAMEASY 75
++ CGIA ASY
Sbjct: 202 AKD----RRNHCGIASAASY 217
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E + YW+VKNSWG WG GY++M
Sbjct: 143 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 202
Query: 56 ERNVAGTLTGKCGIAMEASY 75
++ CGIA ASY
Sbjct: 203 AKD----RRNHCGIASAASY 218
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E + YW+VKNSWG WG GY++M
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
Query: 56 ERNVAGTLTGKCGIAMEASY 75
++ CGIA ASY
Sbjct: 202 AKD----RRNHCGIASAASY 217
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E + YW+VKNSWG WG GY++M
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
Query: 56 ERNVAGTLTGKCGIAMEASY 75
++ CGIA ASY
Sbjct: 202 AKD----RRNHCGIASAASY 217
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRM 55
+F Y+ GI F C + +DHGV VGYG E + YW+VKNSWG WG GY++M
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKM 201
Query: 56 ERNVAGTLTGKCGIAMEASY 75
++ CGIA ASY
Sbjct: 202 AKD----RRNHCGIASAASY 217
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 2 AFQLYES-GIFTGRC----GTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRM 55
+FQLY GIF G ++DH V VGYG+ ADYWIVKNSWG+ WG GYI +
Sbjct: 138 SFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILI 197
Query: 56 ERNVAGTLTGKCGIAMEASY 75
RN G C I SY
Sbjct: 198 RRNT-NRPDGVCAIDAWGSY 216
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 3 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGAD----------YWIVKNSWGSSWGEAGY 52
F Y G + G CG + +H V VGYG ++ + Y+I+KNSWGS WGE GY
Sbjct: 158 FAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGY 217
Query: 53 IRMERNVAGTLTGKCGIAMEA 73
I +E + G C I EA
Sbjct: 218 INLETDENG-YKKTCSIGTEA 237
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 2 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
++ Y G+ T +LDHGV VGY YWI+KNSW + WGE GYIR+ +
Sbjct: 143 SWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG--- 199
Query: 62 TLTGKCGIAMEAS 74
+ +C + EAS
Sbjct: 200 --SNQCLVKEEAS 210
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 2 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
++ Y G+ T LDHGV VGY YWI+KNSW + WGE GYIR+ +
Sbjct: 143 SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG--- 199
Query: 62 TLTGKCGIAMEAS 74
+ +C + EAS
Sbjct: 200 --SNQCLVKEEAS 210
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 2 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
++ Y G+ T LDHGV VGY YWI+KNSW + WGE GYIR+ +
Sbjct: 143 SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKG--- 199
Query: 62 TLTGKCGIAMEAS 74
+ +C + EAS
Sbjct: 200 --SNQCLVKEEAS 210
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 2 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
++ Y G+ T LDHGV VGY YWI+KNSW + WGE GYIR+ +
Sbjct: 143 SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKG--- 199
Query: 62 TLTGKCGIAMEAS 74
+ +C + EAS
Sbjct: 200 --SNQCLVKEEAS 210
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 2 AFQLYESGIF--TGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEAGYIRMERN 58
+F Y+ GI+ + +SL+H + VGYG N YW+VKNSWG WG GY++M ++
Sbjct: 142 SFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKD 201
Query: 59 VAGTLTGKCGIAMEASY 75
CGIA ASY
Sbjct: 202 ----RRNHCGIASAASY 214
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 20 DHGVTAVGYGTE--NGADYWIVKNSWGSSWGEAGYIRMER 57
+H V VGYG + G DYWIVKNSWGS WGE+GY R+ R
Sbjct: 379 NHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRR 418
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 20 DHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMER 57
+H V VGYGT++ G DYWIVKNSWG+ WGE GY R+ R
Sbjct: 380 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR 419
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor
Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 20 DHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMER 57
+H V VGYGT++ G DYWIVKNSWG+ WGE GY R+ R
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR 49
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMER 57
F Y+SGI+ G +L H + +G+G EN A YW++ NSW WGE GY R+ R
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR 237
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 243 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 299
Query: 62 TLTGKCGIAMEA 73
CGI E
Sbjct: 300 --QDHCGIESEV 309
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 182 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 238
Query: 62 TLTGKCGIAMEA 73
CGI E
Sbjct: 239 --QDHCGIESEV 248
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 180 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 236
Query: 62 TLTGKCGIAMEA 73
CGI E
Sbjct: 237 --QDHCGIESEV 246
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 186 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 242
Query: 62 TLTGKCGIAMEA 73
CGI E
Sbjct: 243 --QDHCGIESEV 252
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 181 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 237
Query: 62 TLTGKCGIAMEA 73
CGI E
Sbjct: 238 --QDHCGIESEV 247
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 131 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 187
Query: 62 TLTGKCGIAMEA 73
CGI E
Sbjct: 188 --QDHCGIESEV 197
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 236
Query: 62 TLTGKCGIAME 72
CGI E
Sbjct: 237 --QDHCGIESE 245
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRG--- 236
Query: 62 TLTGKCGIAME 72
CGI E
Sbjct: 237 --QDHCGIESE 245
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F LY+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 132 FLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRG--- 188
Query: 62 TLTGKCGIAME 72
CGI E
Sbjct: 189 --QDHCGIESE 197
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F Y+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 242 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG--- 298
Query: 62 TLTGKCGIAME 72
CGI E
Sbjct: 299 --ENHCGIESE 307
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F Y+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 186 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG--- 242
Query: 62 TLTGKCGIAME 72
CGI E
Sbjct: 243 --ENHCGIESE 251
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F Y+SG++ G + H + +G+G ENG YW+V NSW + WG+ G+ ++ R
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG--- 236
Query: 62 TLTGKCGIAME 72
CGI E
Sbjct: 237 --ENHCGIESE 245
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 19 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 74
+DH V VGYG + +W +KNSWG+ WGE GY + R +G CG+ AS
Sbjct: 159 IDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRG-----SGACGVNTMAS 209
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 6 YESGIFTGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 55
Y GI+ T+ ++H V+ G+G +G +YWIV+NSWG WGE G++R+
Sbjct: 199 YTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 6 YESGIFTGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 55
Y GI+ T+ ++H V+ G+G +G +YWIV+NSWG WGE G++R+
Sbjct: 164 YTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 12/58 (20%)
Query: 2 AFQLYESGIFTGRCGTSLD-------HGVTAVGYGTENGADYWIVKNSWGSSWGEAGY 52
AFQ Y+ GR D H V VGYG+ G DYWIV+NSW ++WG++GY
Sbjct: 150 AFQHYD-----GRTIIQHDNGYQPNYHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGY 202
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F Y SG++ G L H V VG+GT NG YW + NSW + WG GY + R
Sbjct: 263 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRG--- 319
Query: 62 TLTGKCGI 69
+ +CGI
Sbjct: 320 --SSECGI 325
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F Y SG++ G L H V VG+GT NG YW + NSW + WG GY + R
Sbjct: 241 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRG--- 297
Query: 62 TLTGKCGI 69
+ +CGI
Sbjct: 298 --SSECGI 303
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 3 FQLYESGIFTGRCGTSLD-HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAG 61
F Y SG++ G L H V VG+GT NG YW + NSW + WG GY + R
Sbjct: 240 FIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRG--- 296
Query: 62 TLTGKCGI 69
+ +CGI
Sbjct: 297 --SSECGI 302
>pdb|2JYT|A Chain A, Human Granulin C, Isomer 1
pdb|2JYU|A Chain A, Human Granulin C, Isomer 2
Length = 69
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 100 CDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDY 147
CDN SCP S+TCC G WGCCP+ A CC DH CCP Y
Sbjct: 5 CDNVSSCPSSDTCC-QLTSGE----WGCCPIPEAVCCSDHQHCCPQGY 47
>pdb|2JYE|A Chain A, Human Granulin A
Length = 72
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 100 CDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTC 157
CD SCP+ TCC + G AWGCCP A CC+DH CCP + C+ + GTC
Sbjct: 6 CDMEVSCPDGYTCC-RLQSG----AWGCCPFTQAVCCEDHIHCCPAGF-TCDTQKGTC 57
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 21 HGVTAVGYGTENGADYWIVKNSWGSSWGEAGY 52
H V VGY G DYWIV+NSW ++WG+ GY
Sbjct: 250 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 21 HGVTAVGYGTENGADYWIVKNSWGSSWGEAGY 52
H V VGY G DYWIV+NSW ++WG+ GY
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 21 HGVTAVGYGTENGADYWIVKNSWGSSWGEAGY 52
H V VGY G DYWIV+NSW ++WG+ GY
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 21 HGVTAVGYGTENGADYWIVKNSWGSSWGEAGY 52
H V VGY G DYWIV+NSW ++WG+ GY
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|2JYV|A Chain A, Human Granulin F
Length = 72
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 101 DNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPH 145
D+ + CP+ +TCC + + +WGCCP+ A+CC+D CCPH
Sbjct: 8 DSQFECPDFSTCCVMVDG-----SWGCCPMPQASCCEDRVHCCPH 47
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 11/57 (19%)
Query: 11 FTGRCGTSL------DHGVTAVGYGTENGAD-----YWIVKNSWGSSWGEAGYIRME 56
F+G+ +L DH V VGYG ++ YWIV+NSWG WG+ GY +++
Sbjct: 183 FSGKKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 239
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 11/57 (19%)
Query: 11 FTGRCGTSL------DHGVTAVGYGTENGAD-----YWIVKNSWGSSWGEAGYIRME 56
F+G+ +L DH V VGYG ++ YWIV+NSWG WG+ GY +++
Sbjct: 184 FSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 240
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 35 DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 75
YW+VKNSWG WG GY++M ++ CGIA ASY
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKD----RRNHCGIASAASY 39
>pdb|1FWO|A Chain A, The Solution Structure Of A 35-Residue Fragment From The
GranulinEPITHELIN-Like Subdomain Of Rice Oryzain Beta
(Rob 382-416 (C398s,C399s,C407s,C413s))
Length = 35
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 99 VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLE 131
VCD+ +SCP +TC F + N WGC P+E
Sbjct: 3 VCDDNFSCPAGSTCSSAFGFRNLSLVWGCSPVE 35
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 21 HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 55
H V VGY E ++ ++NSWG++ GE GY M
Sbjct: 237 HAVLCVGYDDE--IRHFRIRNSWGNNVGEDGYFWM 269
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 120 NSCFAWGCCPLEAATCCDDHYSCCPHDYP 148
N C A G C + ATCC+D PH P
Sbjct: 218 NPCKAAGVCLMLLATCCED--DIVPHVLP 244
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 120 NSCFAWGCCPLEAATCCDDHYSCCPHDYP 148
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLP 369
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 120 NSCFAWGCCPLEAATCCDDHYSCCPHDYP 148
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLP 369
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTEN 32
+F Y+ GI F C + +DHGV VGYG E+
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 2 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTEN 32
+F Y+ GI F C + +DHGV VGYG E+
Sbjct: 142 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 120 NSCFAWGCCPLEAATCCDDHYSCCPHDYPICN 151
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLPFIK 372
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 120 NSCFAWGCCPLEAATCCDDHYSCCPHDYPICN 151
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLPFIK 372
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 17 TSLDHGVTAVGYGT-ENGADYWIVKNSWGSS 46
T+ DHG G + G +Y+ VKNSWG++
Sbjct: 314 TTDDHGXQIYGIAKDQEGNEYYXVKNSWGTN 344
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 120 NSCFAWGCCPLEAATCCDDHYSCCPHDYPICN 151
N C A G C + ATCC+D PH P
Sbjct: 343 NPCKAAGVCLMLLATCCED--DIVPHVLPFIK 372
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 19 LDHGVTAVGYGTENGAD----YWIVKNSWGSSWGEAGYI 53
+ H +T ++ D W V+NSWG G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 19 LDHGVTAVGYGTENGAD----YWIVKNSWGSSWGEAGYI 53
+ H +T ++ D W V+NSWG G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 130 LEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDN 163
++ + DD CC H+Y + N++ ++ D+
Sbjct: 157 MKINSLPDDTLICCAHEYTLANIKFALSILPHDS 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.483
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,750,752
Number of Sequences: 62578
Number of extensions: 215264
Number of successful extensions: 801
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 129
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)