Query 029611
Match_columns 190
No_of_seqs 287 out of 1480
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 15:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4296 Epithelin/granulin [Si 100.0 7.4E-29 1.6E-33 180.8 5.5 82 100-181 1-82 (90)
2 cd02698 Peptidase_C1A_Cathepsi 99.9 2E-24 4.4E-29 183.2 8.7 76 2-77 160-237 (239)
3 PTZ00021 falcipain-2; Provisio 99.9 2.5E-24 5.4E-29 200.3 7.5 78 1-79 402-489 (489)
4 PTZ00203 cathepsin L protease; 99.9 7.1E-24 1.5E-28 190.2 8.6 69 2-76 269-338 (348)
5 cd02620 Peptidase_C1A_Cathepsi 99.9 6.3E-24 1.4E-28 179.9 7.6 69 1-74 165-234 (236)
6 cd02621 Peptidase_C1A_Cathepsi 99.9 6.7E-24 1.5E-28 179.8 7.7 71 1-76 154-240 (243)
7 PTZ00200 cysteine proteinase; 99.9 5.6E-24 1.2E-28 196.4 7.6 76 1-78 368-445 (448)
8 KOG1543 Cysteine proteinase Ca 99.9 1.7E-23 3.6E-28 186.2 6.7 69 2-75 250-320 (325)
9 cd02248 Peptidase_C1A Peptidas 99.9 1.1E-22 2.4E-27 166.4 7.9 70 2-76 139-210 (210)
10 smart00645 Pept_C1 Papain fami 99.9 2.6E-22 5.6E-27 163.1 8.2 67 2-72 100-169 (174)
11 KOG1542 Cysteine proteinase Ca 99.9 7E-23 1.5E-27 182.4 4.5 71 2-77 295-370 (372)
12 smart00277 GRAN Granulin. 99.9 6.9E-23 1.5E-27 137.3 3.3 51 101-157 1-51 (51)
13 PF00112 Peptidase_C1: Papain 99.9 5.9E-22 1.3E-26 161.3 6.7 72 2-77 146-219 (219)
14 PTZ00049 cathepsin C-like prot 99.8 3.1E-21 6.7E-26 184.8 6.7 73 2-79 579-677 (693)
15 PTZ00364 dipeptidyl-peptidase 99.8 2.1E-20 4.5E-25 176.1 7.7 72 2-78 365-459 (548)
16 PTZ00462 Serine-repeat antigen 99.8 8E-19 1.7E-23 172.9 7.2 75 2-80 701-783 (1004)
17 PF00396 Granulin: Granulin; 99.7 6.9E-19 1.5E-23 114.4 2.1 43 111-159 1-43 (43)
18 cd02619 Peptidase_C1 C1 Peptid 99.7 3.6E-17 7.8E-22 133.2 5.7 59 1-59 146-213 (223)
19 KOG1544 Predicted cysteine pro 99.6 1.4E-15 2.9E-20 135.8 5.2 68 1-73 374-455 (470)
20 cd00585 Peptidase_C1B Peptidas 99.5 3.5E-14 7.7E-19 131.1 5.3 57 2-58 319-399 (437)
21 COG4870 Cysteine protease [Pos 99.1 5.8E-11 1.3E-15 107.1 4.9 43 18-60 263-315 (372)
22 PF03051 Peptidase_C1_2: Pepti 98.6 5.8E-08 1.2E-12 90.2 5.2 41 18-58 358-400 (438)
23 COG3579 PepC Aminopeptidase C 97.1 0.00014 3.1E-09 66.0 0.3 38 19-56 361-400 (444)
24 KOG4128 Bleomycin hydrolases a 84.3 0.096 2.1E-06 48.0 -3.2 38 19-56 371-412 (457)
25 PF05543 Peptidase_C47: Stapho 62.5 15 0.00032 30.7 4.5 29 17-45 117-146 (175)
26 PF14625 Lustrin_cystein: Lust 62.0 5.4 0.00012 25.1 1.5 21 96-116 15-35 (45)
27 PF07829 Toxin_14: Alpha-A con 61.0 3.3 7.1E-05 23.8 0.3 10 126-135 1-11 (26)
28 cd00044 CysPc Calpains, domain 44.3 49 0.0011 29.1 5.2 26 20-45 236-263 (315)
29 smart00289 WR1 Worm-specific r 40.1 20 0.00043 21.4 1.5 20 96-115 12-31 (38)
30 COG4990 Uncharacterized protei 23.2 50 0.0011 28.0 1.5 21 20-44 148-168 (195)
No 1
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.95 E-value=7.4e-29 Score=180.80 Aligned_cols=82 Identities=52% Similarity=1.423 Sum_probs=79.2
Q ss_pred CCCCcccCCCCcccccccCCCcccccccccCCCceecCCCCccCCCCCCcccCCCCeeeCCCCCCccccchhccCCcccc
Q 029611 100 CDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYW 179 (190)
Q Consensus 100 Cd~~~~Cp~~~TCC~~~~~~~~c~~~gCCp~~~avCC~D~~hCCP~g~~~C~~~~~~C~~~~~~~~~~~~~~k~pa~~~~ 179 (190)
||.+++||+++|||++.+.+++|.+|||||+++||||+|+.|||||+||+||+.+++|++..++++.|+.|+|.||+..+
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~ns~~sikal~kkpA~~~~ 80 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKKNSPTSIKALKKKPAIKTL 80 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccCCCcccchhhccCCccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 029611 180 AH 181 (190)
Q Consensus 180 ~~ 181 (190)
..
T Consensus 81 ~~ 82 (90)
T KOG4296|consen 81 ER 82 (90)
T ss_pred cc
Confidence 64
No 2
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=99.91 E-value=2e-24 Score=183.18 Aligned_cols=76 Identities=28% Similarity=0.692 Sum_probs=65.8
Q ss_pred CCccCCCCeEcCC-CCCCCCeEEEEEEEeeeC-CEEEEEEEcCCCCCCCCCceEEEeeccCCcccCcccccccceece
Q 029611 2 AFQLYESGIFTGR-CGTSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 77 (190)
Q Consensus 2 ~f~~Y~~Giy~~~-c~~~~~HaV~iVGyg~~~-g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~~~yp~ 77 (190)
+|++|++|||+.. |...++|||+|||||+++ +++|||||||||++|||+|||||.|+......+.|+|++++.|+.
T Consensus 160 ~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~ 237 (239)
T cd02698 160 ALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWAD 237 (239)
T ss_pred cccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEe
Confidence 6999999999874 455679999999999886 999999999999999999999999986222247899999998875
No 3
>PTZ00021 falcipain-2; Provisional
Probab=99.90 E-value=2.5e-24 Score=200.35 Aligned_cols=78 Identities=45% Similarity=0.934 Sum_probs=68.3
Q ss_pred CCCccCCCCeEcCCCCCCCCeEEEEEEEeeeCC----------EEEEEEEcCCCCCCCCCceEEEeeccCCcccCccccc
Q 029611 1 MAFQLYESGIFTGRCGTSLDHGVTAVGYGTENG----------ADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIA 70 (190)
Q Consensus 1 ~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~~~g----------~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~ 70 (190)
++|++|++|||++.|+..++|||+|||||++++ .+|||||||||++|||+|||||.|+.+.. .++|||+
T Consensus 402 ~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~-~n~CGI~ 480 (489)
T PTZ00021 402 DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGL-MKTCSLG 480 (489)
T ss_pred cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCC-CCCCCCc
Confidence 379999999999889878899999999997642 47999999999999999999999986533 4789999
Q ss_pred ccceeceec
Q 029611 71 MEASYPIKK 79 (190)
Q Consensus 71 ~~~~yp~~~ 79 (190)
+.+.||++.
T Consensus 481 t~a~yP~~~ 489 (489)
T PTZ00021 481 TEAYVPLIE 489 (489)
T ss_pred ccceeEecC
Confidence 999999863
No 4
>PTZ00203 cathepsin L protease; Provisional
Probab=99.90 E-value=7.1e-24 Score=190.16 Aligned_cols=69 Identities=41% Similarity=0.878 Sum_probs=60.8
Q ss_pred CCccCCCCeEcCCCC-CCCCeEEEEEEEeeeCCEEEEEEEcCCCCCCCCCceEEEeeccCCcccCcccccccceec
Q 029611 2 AFQLYESGIFTGRCG-TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 76 (190)
Q Consensus 2 ~f~~Y~~Giy~~~c~-~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~~~yp 76 (190)
+|++|++|||+. |. ..+||+|+|||||+++|++|||||||||++|||+|||||.|+. +.|||+..+...
T Consensus 269 ~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~-----n~Cgi~~~~~~~ 338 (348)
T PTZ00203 269 SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV-----NACLLTGYPVSV 338 (348)
T ss_pred hhcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCC-----CcccccceEEEE
Confidence 699999999985 75 4579999999999989999999999999999999999999983 579998655554
No 5
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=99.90 E-value=6.3e-24 Score=179.87 Aligned_cols=69 Identities=42% Similarity=0.952 Sum_probs=61.1
Q ss_pred CCCccCCCCeEcCCCCC-CCCeEEEEEEEeeeCCEEEEEEEcCCCCCCCCCceEEEeeccCCcccCcccccccce
Q 029611 1 MAFQLYESGIFTGRCGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 74 (190)
Q Consensus 1 ~~f~~Y~~Giy~~~c~~-~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~~~ 74 (190)
++|++|++|||+..+.. ..+|||+|||||++++++|||||||||++|||+|||||.|+. +.|||++++.
T Consensus 165 ~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~-----~~cgi~~~~~ 234 (236)
T cd02620 165 EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS-----NECGIESEVV 234 (236)
T ss_pred hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC-----ccccccccee
Confidence 37999999999876654 458999999999999999999999999999999999999984 5799998764
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=99.90 E-value=6.7e-24 Score=179.82 Aligned_cols=71 Identities=42% Similarity=0.993 Sum_probs=61.7
Q ss_pred CCCccCCCCeEcCC-----CCC---------CCCeEEEEEEEeeeC--CEEEEEEEcCCCCCCCCCceEEEeeccCCccc
Q 029611 1 MAFQLYESGIFTGR-----CGT---------SLDHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMERNVAGTLT 64 (190)
Q Consensus 1 ~~f~~Y~~Giy~~~-----c~~---------~~~HaV~iVGyg~~~--g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~ 64 (190)
++|++|++|||+.. |.. .++|+|+|||||+++ +++|||||||||++|||+|||||+|+.
T Consensus 154 ~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~----- 228 (243)
T cd02621 154 SDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT----- 228 (243)
T ss_pred ccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC-----
Confidence 37999999999864 642 469999999999876 899999999999999999999999984
Q ss_pred Ccccccccceec
Q 029611 65 GKCGIAMEASYP 76 (190)
Q Consensus 65 g~CgI~~~~~yp 76 (190)
+.|||+.++.+.
T Consensus 229 ~~cgi~~~~~~~ 240 (243)
T cd02621 229 NECGIESQAVFA 240 (243)
T ss_pred cccCcccceEee
Confidence 579999887654
No 7
>PTZ00200 cysteine proteinase; Provisional
Probab=99.90 E-value=5.6e-24 Score=196.37 Aligned_cols=76 Identities=47% Similarity=1.001 Sum_probs=67.9
Q ss_pred CCCccCCCCeEcCCCCCCCCeEEEEEEEeee--CCEEEEEEEcCCCCCCCCCceEEEeeccCCcccCcccccccceecee
Q 029611 1 MAFQLYESGIFTGRCGTSLDHGVTAVGYGTE--NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 78 (190)
Q Consensus 1 ~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~~--~g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~~~yp~~ 78 (190)
.+|++|++|||++.|+..++|||+|||||.+ +|.+|||||||||++|||+|||||.|+... .+.|||++.+.||++
T Consensus 368 ~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g--~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 368 RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEG--TDKCGILTVGLTPVF 445 (448)
T ss_pred cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCC--CCcCCccccceeeEE
Confidence 3799999999998898779999999999963 688999999999999999999999997421 478999999999986
No 8
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.7e-23 Score=186.19 Aligned_cols=69 Identities=59% Similarity=1.185 Sum_probs=61.9
Q ss_pred CCccCCCCeEcCCCCC--CCCeEEEEEEEeeeCCEEEEEEEcCCCCCCCCCceEEEeeccCCcccCccccccccee
Q 029611 2 AFQLYESGIFTGRCGT--SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 75 (190)
Q Consensus 2 ~f~~Y~~Giy~~~c~~--~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~~~y 75 (190)
+|++|++|||.+.+.. .++|||+|||||+.++.+|||||||||+.|||+|||||.|+.+ .|+|++.+.|
T Consensus 250 ~F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~-----~~~I~~~~~~ 320 (325)
T KOG1543|consen 250 DFSLYKGGVYAEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVN-----KCGIASEASY 320 (325)
T ss_pred hhhhccCceEeCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCC-----chhhhccccc
Confidence 6999999999886544 5899999999999667999999999999999999999999964 5779988887
No 9
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=99.88 E-value=1.1e-22 Score=166.40 Aligned_cols=70 Identities=66% Similarity=1.309 Sum_probs=61.7
Q ss_pred CCccCCCCeEcCC-C-CCCCCeEEEEEEEeeeCCEEEEEEEcCCCCCCCCCceEEEeeccCCcccCcccccccceec
Q 029611 2 AFQLYESGIFTGR-C-GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 76 (190)
Q Consensus 2 ~f~~Y~~Giy~~~-c-~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~~~yp 76 (190)
+|+.|++|||+.. + ....+|||+|||||++.+.+|||||||||+.||++|||||.++. +.|||+..+.||
T Consensus 139 ~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~-----~~cgi~~~~~~~ 210 (210)
T cd02248 139 SFQFYKGGIYSGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS-----NLCGIASYASYP 210 (210)
T ss_pred ccccCCCCceeCCCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC-----CccCceeeeecC
Confidence 7999999999864 3 34569999999999988999999999999999999999999874 579999877665
No 10
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.87 E-value=2.6e-22 Score=163.14 Aligned_cols=67 Identities=60% Similarity=1.256 Sum_probs=58.7
Q ss_pred CCccCCCCeEcC-CCCCC-CCeEEEEEEEeee-CCEEEEEEEcCCCCCCCCCceEEEeeccCCcccCccccccc
Q 029611 2 AFQLYESGIFTG-RCGTS-LDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 72 (190)
Q Consensus 2 ~f~~Y~~Giy~~-~c~~~-~~HaV~iVGyg~~-~g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~ 72 (190)
+|++|++|||+. .|... .+|+|+|||||.+ ++++|||||||||+.|||+|||||.|+. .+.|+|+..
T Consensus 100 ~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~----~~~c~i~~~ 169 (174)
T smart00645 100 DFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGK----NNECGIEAS 169 (174)
T ss_pred cccCCcCeEECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCC----CCccCceee
Confidence 599999999987 57654 7999999999997 8999999999999999999999999974 257999543
No 11
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7e-23 Score=182.44 Aligned_cols=71 Identities=45% Similarity=0.914 Sum_probs=63.6
Q ss_pred CCccCCCCeEcC---CCCCC-CCeEEEEEEEeeeC-CEEEEEEEcCCCCCCCCCceEEEeeccCCcccCcccccccceec
Q 029611 2 AFQLYESGIFTG---RCGTS-LDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 76 (190)
Q Consensus 2 ~f~~Y~~Giy~~---~c~~~-~~HaV~iVGyg~~~-g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~~~yp 76 (190)
.+|+|++||+.+ .|+.. +||+|||||||.+. .++|||||||||++|||+||+|+.||. |.|||+.+++-+
T Consensus 295 ~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~-----N~CGi~~mvss~ 369 (372)
T KOG1542|consen 295 PMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS-----NACGIADMVSSA 369 (372)
T ss_pred HHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc-----cccccccchhhh
Confidence 368999999987 68765 89999999999987 899999999999999999999999994 689999887655
Q ss_pred e
Q 029611 77 I 77 (190)
Q Consensus 77 ~ 77 (190)
+
T Consensus 370 ~ 370 (372)
T KOG1542|consen 370 A 370 (372)
T ss_pred h
Confidence 4
No 12
>smart00277 GRAN Granulin.
Probab=99.87 E-value=6.9e-23 Score=137.34 Aligned_cols=51 Identities=51% Similarity=1.357 Sum_probs=48.1
Q ss_pred CCCcccCCCCcccccccCCCcccccccccCCCceecCCCCccCCCCCCcccCCCCee
Q 029611 101 DNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTC 157 (190)
Q Consensus 101 d~~~~Cp~~~TCC~~~~~~~~c~~~gCCp~~~avCC~D~~hCCP~g~~~C~~~~~~C 157 (190)
|+.++||+++|||++.+ +.||||||++||||+|++||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~-----g~wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQ-----GSWGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCC-----CCEECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 56789999999999998 7999999999999999999999999 999998876
No 13
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=99.86 E-value=5.9e-22 Score=161.31 Aligned_cols=72 Identities=51% Similarity=1.074 Sum_probs=63.8
Q ss_pred CCccCCCCeEcC-CCCC-CCCeEEEEEEEeeeCCEEEEEEEcCCCCCCCCCceEEEeeccCCcccCcccccccceece
Q 029611 2 AFQLYESGIFTG-RCGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 77 (190)
Q Consensus 2 ~f~~Y~~Giy~~-~c~~-~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~~~yp~ 77 (190)
+|+.|++|||+. .+.. ..+|+|+|||||++.++.|||||||||+.||++|||||.|+.+ ++|+|+.+++||+
T Consensus 146 ~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~----~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 146 DFQNYKSGIYDPPDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN----NECGIESQAVYPI 219 (219)
T ss_dssp HHHTEESSEECSTSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS----SGGGTTSSEEEEE
T ss_pred ccccccceeeeccccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC----CcCccCceeeecC
Confidence 489999999987 4654 5699999999999999999999999999999999999999863 4799999999985
No 14
>PTZ00049 cathepsin C-like protein; Provisional
Probab=99.83 E-value=3.1e-21 Score=184.81 Aligned_cols=73 Identities=36% Similarity=0.842 Sum_probs=62.4
Q ss_pred CCccCCCCeEcC-------CCCC---------------CCCeEEEEEEEeee--CCE--EEEEEEcCCCCCCCCCceEEE
Q 029611 2 AFQLYESGIFTG-------RCGT---------------SLDHGVTAVGYGTE--NGA--DYWIVKNSWGSSWGEAGYIRM 55 (190)
Q Consensus 2 ~f~~Y~~Giy~~-------~c~~---------------~~~HaV~iVGyg~~--~g~--~YWivkNSWG~~WGe~Gy~~i 55 (190)
+|++|++|||+. .|.. .++|||+|||||++ +|. +|||||||||+.|||+|||||
T Consensus 579 dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI 658 (693)
T PTZ00049 579 DFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKI 658 (693)
T ss_pred hhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEE
Confidence 799999999974 2632 36999999999985 464 799999999999999999999
Q ss_pred eeccCCcccCcccccccceeceec
Q 029611 56 ERNVAGTLTGKCGIAMEASYPIKK 79 (190)
Q Consensus 56 ~r~~~~~~~g~CgI~~~~~yp~~~ 79 (190)
.|+. +.|||+.++.|+...
T Consensus 659 ~RG~-----N~CGIEs~a~~~~pd 677 (693)
T PTZ00049 659 IRGK-----NFSGIESQSLFIEPD 677 (693)
T ss_pred EcCC-----CccCCccceeEEeee
Confidence 9984 579999999887643
No 15
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=99.82 E-value=2.1e-20 Score=176.15 Aligned_cols=72 Identities=29% Similarity=0.620 Sum_probs=59.9
Q ss_pred CCccCCCCeEcC---------CC-----------CCCCCeEEEEEEEeee-CCEEEEEEEcCCCC--CCCCCceEEEeec
Q 029611 2 AFQLYESGIFTG---------RC-----------GTSLDHGVTAVGYGTE-NGADYWIVKNSWGS--SWGEAGYIRMERN 58 (190)
Q Consensus 2 ~f~~Y~~Giy~~---------~c-----------~~~~~HaV~iVGyg~~-~g~~YWivkNSWG~--~WGe~Gy~~i~r~ 58 (190)
+|++|++|||.+ .| ...+||||+|||||++ +|.+|||||||||+ +|||+|||||+||
T Consensus 365 df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG 444 (548)
T PTZ00364 365 DWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARG 444 (548)
T ss_pred HHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcC
Confidence 689999999852 11 1347999999999974 78999999999999 9999999999998
Q ss_pred cCCcccCcccccccceecee
Q 029611 59 VAGTLTGKCGIAMEASYPIK 78 (190)
Q Consensus 59 ~~~~~~g~CgI~~~~~yp~~ 78 (190)
. +.|||++++.....
T Consensus 445 ~-----N~CGIes~~v~~~~ 459 (548)
T PTZ00364 445 V-----NAYNIESEVVVMYW 459 (548)
T ss_pred C-----Ccccccceeeeeee
Confidence 4 57999998764433
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.76 E-value=8e-19 Score=172.94 Aligned_cols=75 Identities=35% Similarity=0.674 Sum_probs=61.9
Q ss_pred CCccC-CCCeEc-CCCCC-CCCeEEEEEEEeee-----CCEEEEEEEcCCCCCCCCCceEEEeeccCCcccCcccccccc
Q 029611 2 AFQLY-ESGIFT-GRCGT-SLDHGVTAVGYGTE-----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEA 73 (190)
Q Consensus 2 ~f~~Y-~~Giy~-~~c~~-~~~HaV~iVGyg~~-----~g~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~CgI~~~~ 73 (190)
+|++| ++|||. ..|+. .++|||+|||||.+ ++++|||||||||+.|||+|||||.|+. .+.|||+...
T Consensus 701 df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g----~n~CGin~i~ 776 (1004)
T PTZ00462 701 NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG----PSHCEDNFIH 776 (1004)
T ss_pred hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC----CCCCccchhe
Confidence 58888 489864 46874 57999999999974 2579999999999999999999999853 4679998888
Q ss_pred eeceecC
Q 029611 74 SYPIKKG 80 (190)
Q Consensus 74 ~yp~~~~ 80 (190)
.+++...
T Consensus 777 t~~~fn~ 783 (1004)
T PTZ00462 777 SVVIFNI 783 (1004)
T ss_pred eeeeEee
Confidence 8887654
No 17
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.74 E-value=6.9e-19 Score=114.37 Aligned_cols=43 Identities=44% Similarity=1.229 Sum_probs=39.8
Q ss_pred cccccccCCCcccccccccCCCceecCCCCccCCCCCCcccCCCCeeeC
Q 029611 111 TCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLM 159 (190)
Q Consensus 111 TCC~~~~~~~~c~~~gCCp~~~avCC~D~~hCCP~g~~~C~~~~~~C~~ 159 (190)
|||.+.+ +.|+||||++||||+|++||||+|| +||++.++|+|
T Consensus 1 TCC~~~~-----g~~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPS-----GGYGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TT-----SSEEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCC-----CCccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 7998887 6899999999999999999999999 99999999986
No 18
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.68 E-value=3.6e-17 Score=133.22 Aligned_cols=59 Identities=36% Similarity=0.626 Sum_probs=49.8
Q ss_pred CCCccCCCCeEc------CCCC-CCCCeEEEEEEEeeeC--CEEEEEEEcCCCCCCCCCceEEEeecc
Q 029611 1 MAFQLYESGIFT------GRCG-TSLDHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMERNV 59 (190)
Q Consensus 1 ~~f~~Y~~Giy~------~~c~-~~~~HaV~iVGyg~~~--g~~YWivkNSWG~~WGe~Gy~~i~r~~ 59 (190)
++|..|++|+|. ..+. ...+|||+|||||.+. ++.|||||||||+.||++||+||.++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 146 SGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred cchhcccCccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 368899999862 2233 3569999999999876 899999999999999999999999874
No 19
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=99.58 E-value=1.4e-15 Score=135.76 Aligned_cols=68 Identities=40% Similarity=0.832 Sum_probs=56.2
Q ss_pred CCCccCCCCeEcCCCC---------CCCCeEEEEEEEeeeC---C--EEEEEEEcCCCCCCCCCceEEEeeccCCcccCc
Q 029611 1 MAFQLYESGIFTGRCG---------TSLDHGVTAVGYGTEN---G--ADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGK 66 (190)
Q Consensus 1 ~~f~~Y~~Giy~~~c~---------~~~~HaV~iVGyg~~~---g--~~YWivkNSWG~~WGe~Gy~~i~r~~~~~~~g~ 66 (190)
.||.+|++|||++.-. ....|+|.|.|||++. | .+|||..||||+.|||+|||||.||+ +.
T Consensus 374 EDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGv-----Ne 448 (470)
T KOG1544|consen 374 EDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGV-----NE 448 (470)
T ss_pred hhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccc-----cc
Confidence 4899999999976321 1347999999999873 3 67999999999999999999999996 46
Q ss_pred ccccccc
Q 029611 67 CGIAMEA 73 (190)
Q Consensus 67 CgI~~~~ 73 (190)
|-|+...
T Consensus 449 cdIEsfv 455 (470)
T KOG1544|consen 449 CDIESFV 455 (470)
T ss_pred hhhhHhh
Confidence 8887654
No 20
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.47 E-value=3.5e-14 Score=131.13 Aligned_cols=57 Identities=30% Similarity=0.598 Sum_probs=48.3
Q ss_pred CCccCCCCeEcCC---------------------C-CCCCCeEEEEEEEeee-CCE-EEEEEEcCCCCCCCCCceEEEee
Q 029611 2 AFQLYESGIFTGR---------------------C-GTSLDHGVTAVGYGTE-NGA-DYWIVKNSWGSSWGEAGYIRMER 57 (190)
Q Consensus 2 ~f~~Y~~Giy~~~---------------------c-~~~~~HaV~iVGyg~~-~g~-~YWivkNSWG~~WGe~Gy~~i~r 57 (190)
.|+.|++||++.. + .+.++|||+||||+.+ +|+ .||+||||||+.||++||++|++
T Consensus 319 ~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~ 398 (437)
T cd00585 319 KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSD 398 (437)
T ss_pred hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCCCCcceEEEEcccCCCCCCCcceehhH
Confidence 4788999999642 2 3456999999999986 476 69999999999999999999987
Q ss_pred c
Q 029611 58 N 58 (190)
Q Consensus 58 ~ 58 (190)
+
T Consensus 399 ~ 399 (437)
T cd00585 399 D 399 (437)
T ss_pred H
Confidence 5
No 21
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.8e-11 Score=107.10 Aligned_cols=43 Identities=42% Similarity=0.846 Sum_probs=36.1
Q ss_pred CCCeEEEEEEEeeeC----------CEEEEEEEcCCCCCCCCCceEEEeeccC
Q 029611 18 SLDHGVTAVGYGTEN----------GADYWIVKNSWGSSWGEAGYIRMERNVA 60 (190)
Q Consensus 18 ~~~HaV~iVGyg~~~----------g~~YWivkNSWG~~WGe~Gy~~i~r~~~ 60 (190)
..+|||+||||++.- |.-.||||||||+.||++|||+|+....
T Consensus 263 ~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya 315 (372)
T COG4870 263 NWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYA 315 (372)
T ss_pred cccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeec
Confidence 458999999998641 3449999999999999999999997643
No 22
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=98.58 E-value=5.8e-08 Score=90.17 Aligned_cols=41 Identities=32% Similarity=0.757 Sum_probs=33.8
Q ss_pred CCCeEEEEEEEeee-CCE-EEEEEEcCCCCCCCCCceEEEeec
Q 029611 18 SLDHGVTAVGYGTE-NGA-DYWIVKNSWGSSWGEAGYIRMERN 58 (190)
Q Consensus 18 ~~~HaV~iVGyg~~-~g~-~YWivkNSWG~~WGe~Gy~~i~r~ 58 (190)
..+|||+|||...+ +|+ .+|+|+||||+..|.+||+.|+..
T Consensus 358 ~~tHAM~itGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 358 TMTHAMVITGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp --EEEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CCceeEEEEEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 35899999999984 676 599999999999999999999843
No 23
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=97.07 E-value=0.00014 Score=66.04 Aligned_cols=38 Identities=32% Similarity=0.698 Sum_probs=33.2
Q ss_pred CCeEEEEEEEeee-CCE-EEEEEEcCCCCCCCCCceEEEe
Q 029611 19 LDHGVTAVGYGTE-NGA-DYWIVKNSWGSSWGEAGYIRME 56 (190)
Q Consensus 19 ~~HaV~iVGyg~~-~g~-~YWivkNSWG~~WGe~Gy~~i~ 56 (190)
+.|||+|.|...+ +|. --|.|+||||.+-|.+|||-++
T Consensus 361 mTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 361 MTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred HHHHHHhhccccccCCCceeeEeecccccccCCCceEeeh
Confidence 4799999999975 444 4899999999999999999886
No 24
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=84.32 E-value=0.096 Score=48.03 Aligned_cols=38 Identities=29% Similarity=0.581 Sum_probs=31.8
Q ss_pred CCeEEEEEEEee-e---CCEEEEEEEcCCCCCCCCCceEEEe
Q 029611 19 LDHGVTAVGYGT-E---NGADYWIVKNSWGSSWGEAGYIRME 56 (190)
Q Consensus 19 ~~HaV~iVGyg~-~---~g~~YWivkNSWG~~WGe~Gy~~i~ 56 (190)
.+|||+|.|.|. + .+-.-|-|+||||.+-|.+||..|.
T Consensus 371 mthAml~T~v~~kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 371 MTHAMLLTSVGLKDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred HHHHHHhhhccccCcccCCchhhhhhchhhhhccccchhhhh
Confidence 489999999994 2 3455799999999999999997765
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=62.54 E-value=15 Score=30.74 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=21.1
Q ss_pred CCCCeEEEEEEEeee-CCEEEEEEEcCCCC
Q 029611 17 TSLDHGVTAVGYGTE-NGADYWIVKNSWGS 45 (190)
Q Consensus 17 ~~~~HaV~iVGyg~~-~g~~YWivkNSWG~ 45 (190)
....|||+||||-.. +|.+|.++=|=|-.
T Consensus 117 ~~~gHAlavvGya~~~~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 117 PHAGHALAVVGYAKPNNGQKTYYFWNPWWN 146 (175)
T ss_dssp B--EEEEEEEEEEEETTSEEEEEEE-TT-S
T ss_pred CccceeEEEEeeeecCCCCeEEEEeCCccC
Confidence 346899999999874 67999999888744
No 26
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=62.00 E-value=5.4 Score=25.09 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=15.9
Q ss_pred CCcCCCCCcccCCCCcccccc
Q 029611 96 PPAVCDNYYSCPESNTCCCVF 116 (190)
Q Consensus 96 ~~~~Cd~~~~Cp~~~TCC~~~ 116 (190)
.++.|+....||.+.+|=...
T Consensus 15 ~~~~C~~~~~CP~~y~C~~~~ 35 (45)
T PF14625_consen 15 QPVSCSPDNSCPSGYSCHFST 35 (45)
T ss_pred CeeECcCCCCCCCcCEeeecC
Confidence 357898878899999984433
No 27
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=61.01 E-value=3.3 Score=23.80 Aligned_cols=10 Identities=60% Similarity=1.693 Sum_probs=6.0
Q ss_pred ccc-cCCCcee
Q 029611 126 GCC-PLEAATC 135 (190)
Q Consensus 126 gCC-p~~~avC 135 (190)
||| |||||.|
T Consensus 1 gccg~ypnaac 11 (26)
T PF07829_consen 1 GCCGPYPNAAC 11 (26)
T ss_dssp --STTSSSSS-
T ss_pred CCccCCCCccc
Confidence 466 8999988
No 28
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=44.35 E-value=49 Score=29.10 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=23.4
Q ss_pred CeEEEEEEEeeeC--CEEEEEEEcCCCC
Q 029611 20 DHGVTAVGYGTEN--GADYWIVKNSWGS 45 (190)
Q Consensus 20 ~HaV~iVGyg~~~--g~~YWivkNSWG~ 45 (190)
+||-.|+++-..+ +..+-.+||-||.
T Consensus 236 ~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 236 GHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred CcceEEeEEEEEccCceEEEEecCCccC
Confidence 8999999998766 8999999999995
No 29
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=40.13 E-value=20 Score=21.35 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=15.9
Q ss_pred CCcCCCCCcccCCCCccccc
Q 029611 96 PPAVCDNYYSCPESNTCCCV 115 (190)
Q Consensus 96 ~~~~Cd~~~~Cp~~~TCC~~ 115 (190)
.++.|.....||++.+|=..
T Consensus 12 ~~~~C~~~~~CP~g~~C~~~ 31 (38)
T smart00289 12 SPVRCSPNGSCPSGYSCQNS 31 (38)
T ss_pred CCeECCCCCCCCCCCEEecC
Confidence 35689888999999998744
No 30
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.16 E-value=50 Score=27.98 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=15.6
Q ss_pred CeEEEEEEEeeeCCEEEEEEEcCCC
Q 029611 20 DHGVTAVGYGTENGADYWIVKNSWG 44 (190)
Q Consensus 20 ~HaV~iVGyg~~~g~~YWivkNSWG 44 (190)
-|+|+|+||++. |...-+.||
T Consensus 148 ~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 148 IHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred eeeeEeeccccc----ceEeccccc
Confidence 599999999854 556666663
Done!