Query 029612
Match_columns 190
No_of_seqs 184 out of 1117
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 15:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 3.3E-44 7.2E-49 319.7 18.6 185 3-187 575-759 (759)
2 PLN02993 lupeol synthase 100.0 3E-42 6.6E-47 307.7 18.6 182 3-184 575-756 (763)
3 KOG0497 Oxidosqualene-lanoster 100.0 2.3E-37 4.9E-42 267.8 11.0 187 1-187 572-758 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 100.0 1.3E-36 2.9E-41 270.6 16.1 172 4-180 463-634 (634)
5 TIGR01507 hopene_cyclase squal 100.0 8.4E-36 1.8E-40 265.3 16.8 163 17-184 470-633 (635)
6 TIGR01787 squalene_cyclas squa 100.0 2E-35 4.3E-40 262.7 16.6 167 12-182 454-621 (621)
7 cd02892 SQCY_1 Squalene cyclas 100.0 1.2E-32 2.6E-37 246.3 16.1 168 8-180 467-634 (634)
8 cd02889 SQCY Squalene cyclase 99.9 4.8E-27 1E-31 196.3 16.1 162 14-180 187-348 (348)
9 PF13249 Prenyltrans_2: Prenyl 99.9 5.2E-22 1.1E-26 140.4 8.6 111 24-150 1-113 (113)
10 PLN03012 Camelliol C synthase 99.9 1.8E-21 4E-26 174.4 13.6 152 15-181 510-694 (759)
11 PLN02993 lupeol synthase 99.9 8.7E-21 1.9E-25 170.4 14.8 151 15-180 510-693 (763)
12 TIGR01507 hopene_cyclase squal 99.8 2E-20 4.2E-25 167.2 14.9 152 13-181 398-572 (635)
13 cd02896 complement_C3_C4_C5 Pr 99.8 2E-20 4.4E-25 153.8 12.5 144 16-180 101-297 (297)
14 cd02897 A2M_2 Proteins similar 99.8 1.2E-19 2.5E-24 148.9 14.5 144 17-180 101-292 (292)
15 TIGR03463 osq_cycl 2,3-oxidosq 99.8 6.6E-20 1.4E-24 163.9 14.0 149 16-180 398-577 (634)
16 cd02889 SQCY Squalene cyclase 99.8 1.6E-19 3.5E-24 150.9 12.2 151 20-182 1-180 (348)
17 COG1657 SqhC Squalene cyclase 99.8 9.5E-21 2.1E-25 162.8 4.4 163 18-184 352-514 (517)
18 cd02896 complement_C3_C4_C5 Pr 99.8 1.4E-18 3.1E-23 142.8 12.3 129 13-142 47-183 (297)
19 PF13243 Prenyltrans_1: Prenyl 99.8 8.2E-20 1.8E-24 128.6 3.1 107 20-143 1-107 (109)
20 cd02897 A2M_2 Proteins similar 99.8 4E-18 8.7E-23 139.8 13.5 126 14-144 45-175 (292)
21 TIGR01787 squalene_cyclas squa 99.8 3.9E-18 8.4E-23 152.3 13.9 153 14-181 384-562 (621)
22 cd02892 SQCY_1 Squalene cyclas 99.8 1.8E-17 3.9E-22 148.8 15.0 151 14-180 396-577 (634)
23 PF07678 A2M_comp: A-macroglob 99.8 2.5E-17 5.4E-22 132.1 14.0 139 22-181 1-245 (246)
24 cd00688 ISOPREN_C2_like This g 99.7 9.9E-17 2.2E-21 129.2 14.4 149 14-180 48-200 (300)
25 cd00688 ISOPREN_C2_like This g 99.7 3.6E-16 7.7E-21 125.9 13.9 142 17-180 159-300 (300)
26 cd02894 GGTase-II Geranylgeran 99.7 4E-16 8.8E-21 127.7 14.4 130 15-162 97-227 (287)
27 cd02890 PTase Protein prenyltr 99.7 3E-15 6.5E-20 122.4 14.0 126 19-162 99-226 (286)
28 PLN03201 RAB geranylgeranyl tr 99.6 1.1E-14 2.3E-19 120.8 12.9 125 20-162 106-231 (316)
29 cd02891 A2M_like Proteins simi 99.6 1.1E-14 2.3E-19 118.4 12.1 125 13-143 44-172 (282)
30 cd02890 PTase Protein prenyltr 99.6 6.3E-14 1.4E-18 114.6 14.9 122 17-152 46-169 (286)
31 cd02895 GGTase-I Geranylgerany 99.5 1.8E-13 3.8E-18 113.1 13.8 129 20-162 114-247 (307)
32 cd02894 GGTase-II Geranylgeran 99.5 2.3E-13 5E-18 111.5 12.8 135 19-178 149-285 (287)
33 cd02893 FTase Protein farnesyl 99.5 4.5E-13 9.7E-18 110.3 13.8 125 20-162 100-226 (299)
34 cd02893 FTase Protein farnesyl 99.5 3E-12 6.5E-17 105.5 15.1 121 18-152 47-169 (299)
35 cd02895 GGTase-I Geranylgerany 99.4 1.7E-12 3.8E-17 107.2 12.8 137 19-178 166-305 (307)
36 PLN03201 RAB geranylgeranyl tr 99.4 4.1E-12 8.8E-17 105.4 14.6 117 20-152 58-175 (316)
37 PLN02710 farnesyltranstransfer 99.4 2.5E-12 5.4E-17 110.0 13.5 137 20-181 145-282 (439)
38 PF13243 Prenyltrans_1: Prenyl 99.4 3.7E-14 8E-19 99.6 1.5 68 69-151 1-68 (109)
39 PF13249 Prenyltrans_2: Prenyl 99.4 7.6E-13 1.6E-17 93.2 6.3 85 73-182 1-87 (113)
40 KOG0366 Protein geranylgeranyl 99.4 1.5E-11 3.3E-16 97.1 12.0 148 20-180 116-301 (329)
41 KOG0497 Oxidosqualene-lanoster 99.3 1.2E-11 2.7E-16 108.7 10.9 151 18-181 512-693 (760)
42 PLN02710 farnesyltranstransfer 99.3 6.8E-11 1.5E-15 101.2 13.0 118 19-152 93-214 (439)
43 COG5029 CAL1 Prenyltransferase 99.2 1.5E-10 3.2E-15 93.7 11.4 124 22-162 130-254 (342)
44 cd02891 A2M_like Proteins simi 99.2 5.8E-10 1.3E-14 90.6 13.3 143 16-180 99-282 (282)
45 KOG1366 Alpha-macroglobulin [P 99.1 5.1E-10 1.1E-14 107.1 11.4 154 13-187 966-1217(1436)
46 TIGR02474 pec_lyase pectate ly 99.0 4.4E-09 9.5E-14 85.4 11.1 144 3-146 52-223 (290)
47 TIGR02474 pec_lyase pectate ly 98.9 1.5E-08 3.3E-13 82.3 9.9 97 48-148 45-156 (290)
48 KOG0366 Protein geranylgeranyl 98.8 3E-08 6.5E-13 78.7 9.5 117 20-152 68-185 (329)
49 COG5029 CAL1 Prenyltransferase 98.8 4.2E-08 9E-13 79.6 10.2 142 17-183 173-317 (342)
50 KOG0367 Protein geranylgeranyl 98.7 1.3E-07 2.8E-12 76.2 9.3 140 20-183 176-322 (347)
51 KOG0365 Beta subunit of farnes 98.7 2.9E-07 6.4E-12 75.6 11.1 121 18-153 120-243 (423)
52 KOG0367 Protein geranylgeranyl 98.6 2.8E-07 6E-12 74.4 10.0 121 23-162 130-259 (347)
53 PF07678 A2M_comp: A-macroglob 98.6 1.5E-07 3.3E-12 75.5 7.2 98 71-181 1-101 (246)
54 COG1657 SqhC Squalene cyclase 98.6 1E-07 2.3E-12 82.8 6.0 122 18-152 281-424 (517)
55 PF00432 Prenyltrans: Prenyltr 98.5 4.6E-07 1E-11 53.2 5.9 42 68-121 2-43 (44)
56 PF00432 Prenyltrans: Prenyltr 98.2 5.2E-06 1.1E-10 48.7 5.1 41 20-60 3-44 (44)
57 KOG0365 Beta subunit of farnes 98.1 6.4E-05 1.4E-09 62.1 11.4 117 20-149 74-191 (423)
58 PF09492 Pec_lyase: Pectic aci 98.1 1.8E-05 3.9E-10 64.5 7.7 101 48-152 40-159 (289)
59 PF09492 Pec_lyase: Pectic aci 98.0 8.3E-06 1.8E-10 66.5 4.3 142 4-149 48-221 (289)
60 PLN02592 ent-copalyl diphospha 97.8 8.4E-05 1.8E-09 68.4 8.2 83 44-142 95-177 (800)
61 COG1689 Uncharacterized protei 97.7 0.00048 1E-08 53.7 9.5 117 18-156 139-255 (274)
62 PF01122 Cobalamin_bind: Eukar 97.5 0.00093 2E-08 55.5 9.9 106 22-150 165-279 (326)
63 PF01122 Cobalamin_bind: Eukar 97.4 0.00092 2E-08 55.5 8.4 69 12-87 209-278 (326)
64 TIGR01535 glucan_glucosid gluc 97.3 0.01 2.2E-07 54.1 14.1 131 13-152 246-398 (648)
65 PLN02279 ent-kaur-16-ene synth 97.2 0.00057 1.2E-08 63.1 5.3 85 44-142 53-137 (784)
66 COG1689 Uncharacterized protei 96.9 0.0034 7.4E-08 49.1 6.5 62 44-120 209-270 (274)
67 TIGR01577 oligosac_amyl oligos 96.9 0.019 4.1E-07 52.1 12.3 121 15-142 253-393 (616)
68 PF07470 Glyco_hydro_88: Glyco 96.6 0.061 1.3E-06 44.9 12.4 129 48-183 188-335 (336)
69 PLN02592 ent-copalyl diphospha 96.2 0.01 2.3E-07 54.9 6.1 58 18-78 115-175 (800)
70 PF07470 Glyco_hydro_88: Glyco 95.9 0.045 9.8E-07 45.7 8.3 109 13-121 210-332 (336)
71 PLN02279 ent-kaur-16-ene synth 95.4 0.021 4.5E-07 53.0 4.5 57 18-77 73-134 (784)
72 KOG1366 Alpha-macroglobulin [P 95.4 0.049 1.1E-06 53.6 7.0 92 49-150 948-1045(1436)
73 cd00249 AGE AGE domain; N-acyl 94.8 0.51 1.1E-05 39.8 11.0 127 18-149 14-159 (384)
74 COG4225 Predicted unsaturated 93.1 3.4 7.3E-05 34.8 12.1 75 66-147 231-309 (357)
75 COG2373 Large extracellular al 92.6 0.74 1.6E-05 46.3 9.0 70 12-82 1193-1268(1621)
76 COG4225 Predicted unsaturated 91.0 1.5 3.2E-05 36.9 7.8 81 4-84 217-308 (357)
77 COG2373 Large extracellular al 90.8 0.76 1.7E-05 46.2 7.0 71 65-146 1197-1269(1621)
78 cd00249 AGE AGE domain; N-acyl 90.1 0.99 2.1E-05 38.0 6.4 112 67-186 14-133 (384)
79 TIGR01577 oligosac_amyl oligos 90.0 0.82 1.8E-05 41.6 6.1 68 110-183 299-368 (616)
80 COG2942 N-acyl-D-glucosamine 2 86.1 1.2 2.6E-05 38.0 4.3 56 129-186 78-134 (388)
81 PF10022 DUF2264: Uncharacteri 84.3 20 0.00043 30.6 10.9 90 46-149 155-254 (361)
82 TIGR01535 glucan_glucosid gluc 83.9 2.7 5.9E-05 38.5 5.8 39 110-152 299-337 (648)
83 PF07221 GlcNAc_2-epim: N-acyl 81.8 5.7 0.00012 33.1 6.7 74 13-87 38-125 (346)
84 KOG3760 Heparan sulfate-glucur 76.6 1.8 4E-05 37.1 2.1 23 67-89 380-402 (594)
85 PF07944 DUF1680: Putative gly 75.9 15 0.00034 32.7 7.9 72 64-138 80-157 (520)
86 PF07944 DUF1680: Putative gly 73.8 5.9 0.00013 35.3 4.7 66 10-76 75-157 (520)
87 PF07221 GlcNAc_2-epim: N-acyl 66.2 8 0.00017 32.2 3.7 72 107-181 19-94 (346)
88 PF10022 DUF2264: Uncharacteri 63.6 94 0.002 26.5 12.3 86 48-152 110-198 (361)
89 cd04792 LanM-like LanM-like pr 61.5 1E+02 0.0022 29.1 10.4 129 12-149 558-687 (825)
90 COG2942 N-acyl-D-glucosamine 2 60.2 52 0.0011 28.3 7.4 95 50-151 63-164 (388)
91 PF06662 C5-epim_C: D-glucuron 53.8 71 0.0015 24.6 6.7 69 112-184 33-111 (189)
92 PLN02567 alpha,alpha-trehalase 51.8 1.5E+02 0.0032 27.0 9.3 69 41-121 150-218 (554)
93 COG3387 SGA1 Glucoamylase and 51.1 12 0.00026 34.2 2.4 39 110-152 289-327 (612)
94 PF05382 Amidase_5: Bacterioph 51.1 27 0.00059 25.7 3.9 43 20-62 2-45 (145)
95 KOG3760 Heparan sulfate-glucur 50.4 18 0.00039 31.3 3.2 73 15-87 377-464 (594)
96 cd04794 euk_LANCL eukaryotic L 48.9 1.6E+02 0.0034 24.5 11.8 34 6-39 176-209 (343)
97 cd04794 euk_LANCL eukaryotic L 47.5 71 0.0015 26.6 6.4 26 63-88 184-209 (343)
98 PF00759 Glyco_hydro_9: Glycos 46.1 28 0.00062 30.1 3.9 22 65-86 96-117 (444)
99 PF09282 Mago-bind: Mago bindi 45.8 2.7 5.8E-05 21.7 -1.5 13 27-39 5-17 (27)
100 COG3387 SGA1 Glucoamylase and 39.7 3.1E+02 0.0066 25.3 9.5 91 54-151 485-576 (612)
101 PF05592 Bac_rhamnosid: Bacter 39.7 2.3E+02 0.0049 25.0 8.6 66 17-82 168-246 (509)
102 PLN02973 beta-fructofuranosida 39.7 2.9E+02 0.0063 25.0 9.5 72 107-184 223-311 (571)
103 PLN02909 Endoglucanase 38.7 42 0.0009 29.9 3.7 29 60-88 117-145 (486)
104 COG4813 ThuA Trehalose utiliza 38.3 25 0.00054 27.3 2.0 32 5-39 198-229 (261)
105 COG3538 Uncharacterized conser 38.2 2.6E+02 0.0057 24.1 9.7 116 14-142 260-385 (434)
106 cd04791 LanC_SerThrkinase Lant 36.7 2.3E+02 0.0049 22.9 10.9 80 6-87 94-183 (321)
107 PLN02345 endoglucanase 33.0 56 0.0012 28.9 3.6 23 66-88 85-107 (469)
108 PLN02266 endoglucanase 30.5 85 0.0018 28.2 4.3 24 65-88 132-155 (510)
109 PF08124 Lyase_8_N: Polysaccha 30.2 3.2E+02 0.007 22.7 10.7 65 11-79 80-148 (324)
110 TIGR01561 gde_arch glycogen de 29.4 4.3E+02 0.0094 24.1 8.7 92 18-123 264-362 (575)
111 PF00627 UBA: UBA/TS-N domain; 27.4 1E+02 0.0022 16.6 2.9 20 51-76 18-37 (37)
112 KOG2787 Lanthionine synthetase 27.3 1.6E+02 0.0034 25.1 5.0 25 15-39 242-266 (403)
113 cd00194 UBA Ubiquitin Associat 27.2 91 0.002 16.6 2.7 22 50-77 16-37 (38)
114 COG1331 Highly conserved prote 26.7 5.3E+02 0.012 24.1 13.1 69 14-83 379-450 (667)
115 PF00010 HLH: Helix-loop-helix 26.6 53 0.0011 19.3 1.8 17 15-31 39-55 (55)
116 PF05426 Alginate_lyase: Algin 24.4 3.3E+02 0.0073 21.5 6.6 68 65-143 184-267 (272)
117 TIGR03046 PS_II_psbV2 photosys 24.1 2E+02 0.0043 21.5 4.7 57 18-88 96-152 (155)
118 PF05592 Bac_rhamnosid: Bacter 23.0 2.9E+02 0.0062 24.3 6.4 73 65-144 167-246 (509)
119 cd00083 HLH Helix-loop-helix d 22.9 96 0.0021 18.2 2.5 29 4-32 26-57 (60)
120 PF07849 DUF1641: Protein of u 20.5 1.4E+02 0.0031 16.8 2.7 15 127-142 22-36 (42)
121 smart00165 UBA Ubiquitin assoc 20.0 1.2E+02 0.0026 16.0 2.2 20 51-76 17-36 (37)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=3.3e-44 Score=319.73 Aligned_cols=185 Identities=69% Similarity=1.275 Sum_probs=173.6
Q ss_pred hhhhhCCCCCchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC
Q 029612 3 LFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 82 (190)
.|++.+|.++.+++++.|++|++||++.|++||||.+.||++++|.|++||.+|..+|.++.+.+.|+||++||++.|++
T Consensus 575 ~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~ 654 (759)
T PLN03012 575 LFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKD 654 (759)
T ss_pred HHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCC
Confidence 46777899999999999999999999999999999999999999999999999999998765679999999999999999
Q ss_pred CCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCcee
Q 029612 83 DGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 83 DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~ 162 (190)
||||++.+.+|..+.|.+.+++.|+++.|||||+||+.+|....++.+|+||++||+++|.+||+|.+..++|+|++.||
T Consensus 655 DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~ 734 (759)
T PLN03012 655 NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCL 734 (759)
T ss_pred CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceE
Confidence 99999999999999998865668999999999999999998766666899999999999999999999999999999999
Q ss_pred eccCCccchHHHHHHHHHHHhhcCC
Q 029612 163 LHYPIYRNIFPMWALAEYRSRLLLP 187 (190)
Q Consensus 163 ~~~~~~~~~~~l~aL~~~~~~~~~~ 187 (190)
++|+.|+++|||+||++|++.+++|
T Consensus 735 i~Y~~Yr~~FPl~ALg~Y~~~~~~~ 759 (759)
T PLN03012 735 LHYAAYRNIFPLWALAEYRARVPLP 759 (759)
T ss_pred EecCccchHHHHHHHHHHHHhccCC
Confidence 9999999999999999999998876
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=3e-42 Score=307.70 Aligned_cols=182 Identities=71% Similarity=1.286 Sum_probs=168.4
Q ss_pred hhhhhCCCCCchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC
Q 029612 3 LFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 82 (190)
.|.+.+|.++++++++.|++|++||++.|++||||.+.||++++|.|++||.+|..+|..+.+.+.|+||++||+++|++
T Consensus 575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~ 654 (763)
T PLN02993 575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRD 654 (763)
T ss_pred HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCC
Confidence 45566889999999999999999999999999999999999999999999999999998765568999999999999999
Q ss_pred CCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCcee
Q 029612 83 DGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 83 DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~ 162 (190)
||||++.+.+|..+.|.+.+++.|+++.|||||+||..+|....++.+|+||++||++.|+++|+|++..++|+|++.||
T Consensus 655 DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~ 734 (763)
T PLN02993 655 DGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCM 734 (763)
T ss_pred CCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccce
Confidence 99999999999988888765668999999999999999987655556899999999999999999999999999999999
Q ss_pred eccCCccchHHHHHHHHHHHhh
Q 029612 163 LHYPIYRNIFPMWALAEYRSRL 184 (190)
Q Consensus 163 ~~~~~~~~~~~l~aL~~~~~~~ 184 (190)
++|+.|+++|||+||++|++..
T Consensus 735 i~Y~~Yr~~FPl~ALg~Y~~~~ 756 (763)
T PLN02993 735 LHYATYRNTFPLWALAEYRKAA 756 (763)
T ss_pred eccCccchHHHHHHHHHHHHhh
Confidence 9999999999999999999854
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=267.82 Aligned_cols=187 Identities=69% Similarity=1.257 Sum_probs=179.3
Q ss_pred ChhhhhhCCCCCchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhc
Q 029612 1 MTLFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQ 80 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q 80 (190)
|+.|++++|.||+++++..|.+|++||.+.|.+||||.+.||++++|.|.|++.+|..+|+...+...++||++||++.|
T Consensus 572 L~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q 651 (760)
T KOG0497|consen 572 LVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQ 651 (760)
T ss_pred HHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhh
Confidence 46789999999999999999999999999999999999999999999999999999999998778999999999999999
Q ss_pred cCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCc
Q 029612 81 CEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMEN 160 (190)
Q Consensus 81 ~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~ 160 (190)
++||||++...+|+.+.|.++++..+++.+|++|+++|..++++..|+.++.|+++.|++.|.++|.|++..+.|.|...
T Consensus 652 ~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq~i~g~f~~~ 731 (760)
T KOG0497|consen 652 NPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQEIEGVFNKN 731 (760)
T ss_pred cccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchhHHHHHhhhh
Confidence 99999999999999999999888899999999999999999998888778999999999999999999999999999999
Q ss_pred eeeccCCccchHHHHHHHHHHHhhcCC
Q 029612 161 CMLHYPIYRNIFPMWALAEYRSRLLLP 187 (190)
Q Consensus 161 ~~~~~~~~~~~~~l~aL~~~~~~~~~~ 187 (190)
|+++|+.|+.+|+|+||++|++.+..+
T Consensus 732 ~~~~y~~yr~~F~~waL~~y~~~~~~~ 758 (760)
T KOG0497|consen 732 CMIHYPTYRNIFPIWALGEYRKAYRLR 758 (760)
T ss_pred hhhccchhhhhccHHHHHHHHHHhhhc
Confidence 999999999999999999999987654
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=1.3e-36 Score=270.56 Aligned_cols=172 Identities=37% Similarity=0.760 Sum_probs=155.1
Q ss_pred hhhhCCCCCchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCC
Q 029612 4 FKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCED 83 (190)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 83 (190)
+.+..+.++.++++++|+++++||++.|++||+|.+.||.+++|.|++++.+|..+|... .++.++||++||+++|++|
T Consensus 463 ~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~-~~~~i~rA~~~Ll~~Q~~D 541 (634)
T TIGR03463 463 WRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASP-DDMALQRAAAWLRSYQRAD 541 (634)
T ss_pred HhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCCC
Confidence 344456667788899999999999999999999999999999999999999999998764 4689999999999999999
Q ss_pred CccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceee
Q 029612 84 GGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCML 163 (190)
Q Consensus 84 Ggw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~ 163 (190)
|||++...++..+.|.+ +..|++..||+||+||..++... . .+++|+++||+++|++||+|++..++|+|++.||+
T Consensus 542 GgWg~~~~s~~~~~y~~--~~~S~~~~TA~Al~aL~~~g~~~-~-~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l 617 (634)
T TIGR03463 542 GGWGEVYESCLQARYVE--GKQSQAVMTSWALLALAEAGEGG-H-DAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAML 617 (634)
T ss_pred CCccCccCccccccccC--CCCCcHHHHHHHHHHHHHcCCcC-C-HHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeE
Confidence 99999888877777765 56799999999999999988653 2 38999999999999999999999999999999999
Q ss_pred ccCCccchHHHHHHHHH
Q 029612 164 HYPIYRNIFPMWALAEY 180 (190)
Q Consensus 164 ~~~~~~~~~~l~aL~~~ 180 (190)
+|+.|+++|+|+||++|
T Consensus 618 ~Y~~Y~~~fpl~ALg~y 634 (634)
T TIGR03463 618 DYDLYLRYFPTWALAVC 634 (634)
T ss_pred ecCccchHhHHHHhhcC
Confidence 99999999999999986
No 5
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=8.4e-36 Score=265.34 Aligned_cols=163 Identities=35% Similarity=0.636 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCC
Q 029612 17 KNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNK 96 (190)
Q Consensus 17 ~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~ 96 (190)
++.|++|++||++.|++||+|.+.|+.+++|.|++||.+|...|... ..+.|+||++||+++|++||||++...++.++
T Consensus 470 ~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~~-~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~ 548 (635)
T TIGR01507 470 WPVIERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGIDT-REPYIQKALAWLESHQNPDGGWGEDCRSYEDP 548 (635)
T ss_pred hHHHHHHHHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCcccccc
Confidence 68999999999999999999999999999999999999999988753 57899999999999999999999988888877
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCccccc-ccCceeeccCCccchHHHH
Q 029612 97 KYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGV-FMENCMLHYPIYRNIFPMW 175 (190)
Q Consensus 97 ~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~-~~~~~~~~~~~~~~~~~l~ 175 (190)
+|.+ .+.++++.|+++|+||..++... + .+|+||++||+++|++||+|++.+++|+ ||+.||++|+.|+++|+|+
T Consensus 549 ~~~g--~g~s~~s~TA~AL~AL~~ag~~~-~-~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~Y~~Y~~~fpl~ 624 (635)
T TIGR01507 549 AYAG--KGASTASQTAWALIALIAAGRAE-S-EAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYHMYRHVFPLL 624 (635)
T ss_pred cccC--CCCCcHHHHHHHHHHHHHhCCCC-c-HHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeecccchhhHhHHH
Confidence 7765 45799999999999999998653 3 4899999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHhh
Q 029612 176 ALAEYRSRL 184 (190)
Q Consensus 176 aL~~~~~~~ 184 (190)
||++|++..
T Consensus 625 ALg~y~~~~ 633 (635)
T TIGR01507 625 ALARYKQAI 633 (635)
T ss_pred HHHHHHHhh
Confidence 999999843
No 6
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=2e-35 Score=262.74 Aligned_cols=167 Identities=44% Similarity=0.879 Sum_probs=150.1
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCC
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYR 91 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~ 91 (190)
+.+++++.|++|++||++.|++||+|.+.||.+++|.|++++.+|..+|....+.+.++|+++||+++|++||||++...
T Consensus 454 r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~ 533 (621)
T TIGR01787 454 RADEIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCF 533 (621)
T ss_pred ccHhHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCc
Confidence 44567899999999999999999999999999999999999999999987543458999999999999999999999888
Q ss_pred ccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCccccc-ccCceeeccCCccc
Q 029612 92 SCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGV-FMENCMLHYPIYRN 170 (190)
Q Consensus 92 ~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~-~~~~~~~~~~~~~~ 170 (190)
++..+.|.+ ...|+++.|+|+|+||..++... ..+|+|+++||+++|++||+|++.+++|+ +|+.||++|+.|++
T Consensus 534 s~~~~~y~~--~~~S~~s~Ta~AL~AL~~ag~~~--~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i~Y~~Y~~ 609 (621)
T TIGR01787 534 SYEDPSYVG--SGGSTPSQTGWALMALIAAGEAD--SEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYLKYTNYRN 609 (621)
T ss_pred cccccccCC--CCCCCHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccceecccccch
Confidence 887777765 45799999999999999988653 23899999999999999999999999998 66999999999999
Q ss_pred hHHHHHHHHHHH
Q 029612 171 IFPMWALAEYRS 182 (190)
Q Consensus 171 ~~~l~aL~~~~~ 182 (190)
+|+|+||++|++
T Consensus 610 ~fpl~ALg~y~~ 621 (621)
T TIGR01787 610 IFPLWALGRYRQ 621 (621)
T ss_pred hhHHHHHHHHhC
Confidence 999999999974
No 7
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=1.2e-32 Score=246.32 Aligned_cols=168 Identities=51% Similarity=0.975 Sum_probs=148.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccc
Q 029612 8 YPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWG 87 (190)
Q Consensus 8 ~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~ 87 (190)
.+.++. ++++.+++|++||++.|++||+|.+.|+.+++|.|++++.+|..+|.....++.++++++||+++|++||||+
T Consensus 467 ~~~~r~-~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWg 545 (634)
T cd02892 467 YPGHRR-EIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWG 545 (634)
T ss_pred CcchHH-HHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCC
Confidence 344444 7889999999999999999999999999999999999999999998763357899999999999999999999
Q ss_pred cCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCC
Q 029612 88 ESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPI 167 (190)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~ 167 (190)
+...++..+.|.+ +..+++..||++|++|+..+.. +...++++++||+++|+++|+|.+.+++|++.+.||++|+.
T Consensus 546 e~~~s~~~~~~~~--~~~s~~~~TA~AllaLl~~g~~--~~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~~y~~ 621 (634)
T cd02892 546 ESYLSYEDKSYAG--GGRSTVVQTAWALLALMAAGEP--DSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYIRYHN 621 (634)
T ss_pred CccccccCcccCC--CCCCcHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeeeccCc
Confidence 8776666655543 5678999999999999998875 33489999999999999999999999999977779999999
Q ss_pred ccchHHHHHHHHH
Q 029612 168 YRNIFPMWALAEY 180 (190)
Q Consensus 168 ~~~~~~l~aL~~~ 180 (190)
|+++|+|+||++|
T Consensus 622 Y~~~fpl~ALg~y 634 (634)
T cd02892 622 YRNYFPLWALGRY 634 (634)
T ss_pred hhhHhHHHHhhcC
Confidence 9999999999986
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.95 E-value=4.8e-27 Score=196.34 Aligned_cols=162 Identities=50% Similarity=0.977 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCcc
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSC 93 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~ 93 (190)
+++++.++++++||++.|++||+|.+.|+.++++.|++++.+|..+|... ..+.++++++||+++|++||||+.....+
T Consensus 187 ~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~~g~~~-~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~ 265 (348)
T cd02889 187 REIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAAAGEDE-NSPYVRKACDWLLSKQNPDGGWGESYESY 265 (348)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCcCCccccc
Confidence 35778999999999999999999988888788899999999999998753 56899999999999999999998754333
Q ss_pred CCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCCccchHH
Q 029612 94 PNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFP 173 (190)
Q Consensus 94 ~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (190)
....+.+ ...+++..|+++|++|...+.. +...++++++||.++|+++|+|.+++.+|.+++.+++.+..|.++|+
T Consensus 266 ~~~~~~~--~~~~~~~~Ta~al~aL~~~g~~--~~~~v~~a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (348)
T cd02889 266 EDPSYAG--GGRSTVVQTAWALLALMAAGEP--DSEAVKRGVKYLLNTQQEDGDWPQEEITGVFFKNFYIRYHNYRNYFP 341 (348)
T ss_pred ccccccC--CCCCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCCCCCcCCceeeeeecceeeeccCccchHhH
Confidence 2222222 4578999999999999998765 23489999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 029612 174 MWALAEY 180 (190)
Q Consensus 174 l~aL~~~ 180 (190)
|+||++|
T Consensus 342 ~~~~~~~ 348 (348)
T cd02889 342 LWALGRY 348 (348)
T ss_pred HHHhhcC
Confidence 9999875
No 9
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.87 E-value=5.2e-22 Score=140.42 Aligned_cols=111 Identities=26% Similarity=0.413 Sum_probs=85.8
Q ss_pred HHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHH--HHHHHhhccCCCccccCCCccCCCccCCC
Q 029612 24 TKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKA--TDFLLKIQCEDGGWGESYRSCPNKKYIPL 101 (190)
Q Consensus 24 ~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra--~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~ 101 (190)
|+||+++|++||+|...+..+.+..|+++|.+|...+..+ ..+++ ++||+++|++||||+....
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~~----~~~~~~~~~~L~~~q~~dGg~~~~~~---------- 66 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGEEP----DRDRAAAVEWLLSQQNPDGGWGSNPD---------- 66 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSHH----CHHHHHHHHHHHHHB-TTSGBBSSTT----------
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCcc----cHHHHHHHHHHHHhCCCCCCccCCCC----------
Confidence 6899999999999965456678889999999999999864 25555 9999999999999987411
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCC
Q 029612 102 DGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 150 (190)
Q Consensus 102 ~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~ 150 (190)
+..+++..|.+++++|...+.... ...++++++||+++|++||||.+
T Consensus 67 -~~~~~~~~t~~~l~~l~~~~~~~~-~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 67 -GGPPDVYTTYVALAALELLGRPDD-EEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp -TT-BSHHHHHHHHHHHHHHT-GGC-HTTHCCHHHHHHHTB-TTSSB-S
T ss_pred -CCCccHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcCCCCCCCc
Confidence 245778899999999988776432 23799999999999999999964
No 10
>PLN03012 Camelliol C synthase
Probab=99.87 E-value=1.8e-21 Score=174.41 Aligned_cols=152 Identities=18% Similarity=0.279 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCCccc--------------------ccc--cchhhHHHHHHHHHHhcCCCC------CcH
Q 029612 15 EVKNFIAKATKFIEDIQKSDGSWYG--------------------SWG--ICFTYAAWFAISGLVAAKKTY------SNC 66 (190)
Q Consensus 15 ~~~~~i~~a~~~L~~~Q~~dGsw~~--------------------~~g--~~~~~~Ta~al~aL~~~g~~~------~~~ 66 (190)
..++.+.+|++||++.|++||+|.. ++. .+++..|+.+|.+|...+... ...
T Consensus 510 ~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~ 589 (759)
T PLN03012 510 MDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEIN 589 (759)
T ss_pred ccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhH
Confidence 3458999999999999999999831 111 123445999999998765421 136
Q ss_pred HHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCC
Q 029612 67 LAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDG 146 (190)
Q Consensus 67 ~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~G 146 (190)
+.|+||++||++.|++||||...+.+|. ...|++||.||...+....+..+|+||++||+++|++||
T Consensus 590 ~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y-------------~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DG 656 (759)
T PLN03012 590 AFIKKAAEYIENIQMLDGSWYGNWGICF-------------TYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNG 656 (759)
T ss_pred HHHHHHHHHHHHhcCCCCCCcccccccC-------------CcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCC
Confidence 7999999999999999999987654332 347999999999988753333499999999999999999
Q ss_pred CCCCCcccccccCceeec-----cCCccchHHHHHHHHHH
Q 029612 147 DFPQQELTGVFMENCMLH-----YPIYRNIFPMWALAEYR 181 (190)
Q Consensus 147 gw~~~~~~g~~~~~~~~~-----~~~~~~~~~l~aL~~~~ 181 (190)
||++.+.+ +...-|.. -..+.|.|+|+||-...
T Consensus 657 GWGEs~~S--c~~~~y~~~~~~~S~~~qTaWAl~aLi~ag 694 (759)
T PLN03012 657 GWGESYLS--CPKKIYIAQEGEISNLVQTAWALMGLIHAG 694 (759)
T ss_pred CcCCCCCC--CCCccccCCCCCCCcHHHHHHHHHHHHHcC
Confidence 99977532 22222222 23478999999997653
No 11
>PLN02993 lupeol synthase
Probab=99.86 E-value=8.7e-21 Score=170.41 Aligned_cols=151 Identities=19% Similarity=0.266 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCCccc-------cc---------------ccchhhHHHHHHHHHHhcCC-CCC-----cH
Q 029612 15 EVKNFIAKATKFIEDIQKSDGSWYG-------SW---------------GICFTYAAWFAISGLVAAKK-TYS-----NC 66 (190)
Q Consensus 15 ~~~~~i~~a~~~L~~~Q~~dGsw~~-------~~---------------g~~~~~~Ta~al~aL~~~g~-~~~-----~~ 66 (190)
..++.+.+|++||++.|++||+|.. .| ..+++..|+.||.+|...+. .+. .+
T Consensus 510 ~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~ 589 (763)
T PLN02993 510 IDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEII 589 (763)
T ss_pred chHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHH
Confidence 3458999999999999999999842 01 12356679999999988764 221 25
Q ss_pred HHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCC
Q 029612 67 LAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDG 146 (190)
Q Consensus 67 ~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~G 146 (190)
+.|+||++||++.|++||||...+. ...+..|+++|.||...|....+...|+||++||+++|++||
T Consensus 590 ~~i~rAv~yL~~~Q~~DGSW~G~Wg-------------v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DG 656 (763)
T PLN02993 590 KSIEKAVQFIESKQTPDGSWYGNWG-------------ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDG 656 (763)
T ss_pred HHHHHHHHHHHHhcCCCCCcccccc-------------cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999975422 344568999999999988754343489999999999999999
Q ss_pred CCCCCcccccccCceee-----ccCCccchHHHHHHHHH
Q 029612 147 DFPQQELTGVFMENCML-----HYPIYRNIFPMWALAEY 180 (190)
Q Consensus 147 gw~~~~~~g~~~~~~~~-----~~~~~~~~~~l~aL~~~ 180 (190)
||+.++.+ +...-|. .-..|.|.|+|+||...
T Consensus 657 GWGEs~~S--~~~~~y~~~~~~~St~~qTAwAllaL~~a 693 (763)
T PLN02993 657 GWGESYLS--CPEQRYIPLEGNRSNLVQTAWAMMGLIHA 693 (763)
T ss_pred CcCcCcCc--CCCcccccCCCCCCchhhHHHHHHHHHHc
Confidence 99876521 1222222 12347899999999876
No 12
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.85 E-value=2e-20 Score=167.17 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=113.5
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCccc-c------------cc-------cchhhHHHHHHHHHHhcCCCCCcHHHHHHH
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYG-S------------WG-------ICFTYAAWFAISGLVAAKKTYSNCLAIRKA 72 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~-~------------~g-------~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra 72 (190)
++..+++|++|++||+++|++||+|.. . ++ .+.+..|+.++.+|...+.+. .++.|+||
T Consensus 398 ~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~-~~~~i~ra 476 (635)
T TIGR01507 398 ERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDD-AWPVIERA 476 (635)
T ss_pred cccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCc-hhHHHHHH
Confidence 345678999999999999999999942 0 01 123456999999999988764 47899999
Q ss_pred HHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 73 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 73 ~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
++||++.|++||||...+ +......|+.+|++|...+....+ .+|+||++||+++|++||||++.+
T Consensus 477 v~~L~~~Q~~dG~W~g~w-------------g~~~~Y~T~~al~aL~~~g~~~~~-~~i~rAv~wL~~~Q~~DGGWge~~ 542 (635)
T TIGR01507 477 VEYLKREQEPDGSWFGRW-------------GVNYLYGTGAVLSALKAVGIDTRE-PYIQKALAWLESHQNPDGGWGEDC 542 (635)
T ss_pred HHHHHHccCCCCCCccCC-------------CCccccHHHHHHHHHHHcCCCccc-HHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999999999993321 123466899999999988764333 489999999999999999998654
Q ss_pred ccccccCcee---eccCCccchHHHHHHHHHH
Q 029612 153 LTGVFMENCM---LHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 153 ~~g~~~~~~~---~~~~~~~~~~~l~aL~~~~ 181 (190)
.+ |...-+ -.-..+.|.++|.||..+.
T Consensus 543 ~s--y~~~~~~g~g~s~~s~TA~AL~AL~~ag 572 (635)
T TIGR01507 543 RS--YEDPAYAGKGASTASQTAWALIALIAAG 572 (635)
T ss_pred cc--cccccccCCCCCcHHHHHHHHHHHHHhC
Confidence 21 111111 0123346999999998765
No 13
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.84 E-value=2e-20 Score=153.80 Aligned_cols=144 Identities=21% Similarity=0.242 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccc--------c-c----chhhHHHHHHHHHHhcCCCC-----CcHHH---------
Q 029612 16 VKNFIAKATKFIEDIQKSDGSWYGSW--------G-I----CFTYAAWFAISGLVAAKKTY-----SNCLA--------- 68 (190)
Q Consensus 16 ~~~~i~~a~~~L~~~Q~~dGsw~~~~--------g-~----~~~~~Ta~al~aL~~~g~~~-----~~~~~--------- 68 (190)
.++.|+++++||+++|++||+|.... | . +.+..||+|+.+|.+.+... ...+.
T Consensus 101 ~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~ 180 (297)
T cd02896 101 DQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLE 180 (297)
T ss_pred CHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHH
Confidence 34789999999999999999997542 1 1 23557999999999986421 01223
Q ss_pred --------------------------HHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcC
Q 029612 69 --------------------------IRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAG 122 (190)
Q Consensus 69 --------------------------i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~ 122 (190)
..++.++|.+.|++||+|+....+ ..+.+.+......+++.|||||++++..+
T Consensus 181 ~~~~~~~~~Y~~Al~ayALal~~~~~~~~a~~~L~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~vE~TAYALLall~~~ 259 (297)
T cd02896 181 NQLPNLQRPYALAITAYALALADSPLSHAANRKLLSLAKRDGNGWYWWTI-DSPYWPVPGPSAITVETTAYALLALLKLG 259 (297)
T ss_pred HhcccCCChHHHHHHHHHHHHcCChhhHHHHHHHHHHhhhCCCcceeccC-cCccCCCCCCchhhhHHHHHHHHHHHhcC
Confidence 345556666666678888754332 11222221122347999999999999887
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHHHHHH
Q 029612 123 QMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 180 (190)
Q Consensus 123 ~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~ 180 (190)
.. ..+.++++||.++|+.+|||.+++ .|+++|+||++|
T Consensus 260 ~~----~~a~~iv~WL~~qr~~~Ggf~sTQ----------------dTvval~AL~~y 297 (297)
T cd02896 260 DI----EYANPIARWLTEQRNYGGGFGSTQ----------------DTVVALQALAEY 297 (297)
T ss_pred Cc----hhHHHHHHHHHhcCCCCCCeehHH----------------HHHHHHHHHhcC
Confidence 42 267889999999999999999888 689999999986
No 14
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.83 E-value=1.2e-19 Score=148.90 Aligned_cols=144 Identities=21% Similarity=0.243 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhcccCCCccccc---------c-cchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc-----
Q 029612 17 KNFIAKATKFIEDIQKSDGSWYGSW---------G-ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC----- 81 (190)
Q Consensus 17 ~~~i~~a~~~L~~~Q~~dGsw~~~~---------g-~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~----- 81 (190)
+.+|+++++||+++|++||+|.... + ...+..|++|+.+|.+.|... ..+.|+|+++||.+.+.
T Consensus 101 ~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~-~~~~i~~a~~yL~~~~~~~~~~ 179 (292)
T cd02897 101 ENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS-ERPVVEKALSCLEAALDSISDP 179 (292)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhcccCCCH
Confidence 5789999999999999999996321 1 123457999999999998653 45677888888876543
Q ss_pred ---------------------------------CCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 029612 82 ---------------------------------EDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP 128 (190)
Q Consensus 82 ---------------------------------~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~ 128 (190)
.+|+|+..........|.+ ....++++.|||+|++|...+.. +.
T Consensus 180 y~~al~a~AL~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~ve~TAyaLlall~~~~~--~~ 256 (292)
T cd02897 180 YTLALAAYALTLAGSEKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYW-QAPSAEVEMTAYALLALLSAGGE--DL 256 (292)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCC-CCCcchHHHHHHHHHHHHHcCCc--cH
Confidence 2455654311111111211 12356899999999999988742 22
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHHHHHH
Q 029612 129 TPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 180 (190)
Q Consensus 129 ~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~ 180 (190)
..+.++++||.++|+++|||.+++ .|+++|+||++|
T Consensus 257 ~~~~~~v~WL~~~q~~~Ggf~sTQ----------------dt~~al~AL~~y 292 (292)
T cd02897 257 AEALPIVKWLAKQRNSLGGFSSTQ----------------DTVVALQALAKY 292 (292)
T ss_pred hHHHHHHHHHHHcCCCCCCcccHH----------------HHHHHHHHHHcC
Confidence 378889999999999999999988 689999999986
No 15
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.83 E-value=6.6e-20 Score=163.88 Aligned_cols=149 Identities=24% Similarity=0.250 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCccc-------cc---------------ccchhhHHHHHHHHHHhcCCCCC------cHH
Q 029612 16 VKNFIAKATKFIEDIQKSDGSWYG-------SW---------------GICFTYAAWFAISGLVAAKKTYS------NCL 67 (190)
Q Consensus 16 ~~~~i~~a~~~L~~~Q~~dGsw~~-------~~---------------g~~~~~~Ta~al~aL~~~g~~~~------~~~ 67 (190)
.++.+++|++||++.|++||+|.. .| +.+++..|+.+|.+|...+.... ..+
T Consensus 398 ~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ 477 (634)
T TIGR03463 398 PQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITR 477 (634)
T ss_pred cHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHH
Confidence 347899999999999999999961 11 23467789999999998765321 146
Q ss_pred HHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCC
Q 029612 68 AIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGD 147 (190)
Q Consensus 68 ~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Gg 147 (190)
+|+|+++||++.|++||||..... ......|++++.||...|....+ ..++||++||+++|++|||
T Consensus 478 ai~rav~~L~~~Q~~dGsW~g~Wg-------------~~~~Y~T~~al~aL~~~G~~~~~-~~i~rA~~~Ll~~Q~~DGg 543 (634)
T TIGR03463 478 AISRGVRFLRSRQREDGSFPGSWG-------------VCFTYGTFHGVMGLRAAGASPDD-MALQRAAAWLRSYQRADGG 543 (634)
T ss_pred HHHHHHHHHHHhcCCCCCccccCC-------------CCCcHHHHHHHHHHHHcCCCcCc-HHHHHHHHHHHHccCCCCC
Confidence 899999999999999999964321 22345799999999998875434 4899999999999999999
Q ss_pred CCCCcccccccCceee---ccCCccchHHHHHHHHH
Q 029612 148 FPQQELTGVFMENCML---HYPIYRNIFPMWALAEY 180 (190)
Q Consensus 148 w~~~~~~g~~~~~~~~---~~~~~~~~~~l~aL~~~ 180 (190)
|+....+ +...-|. .-..+.|.++|.||...
T Consensus 544 Wg~~~~s--~~~~~y~~~~~S~~~~TA~Al~aL~~~ 577 (634)
T TIGR03463 544 WGEVYES--CLQARYVEGKQSQAVMTSWALLALAEA 577 (634)
T ss_pred ccCccCc--cccccccCCCCCcHHHHHHHHHHHHHc
Confidence 9864321 1111111 12345788999999764
No 16
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.81 E-value=1.6e-19 Score=150.89 Aligned_cols=151 Identities=24% Similarity=0.319 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhc--------------cCCCc
Q 029612 20 IAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQ--------------CEDGG 85 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q--------------~~DGg 85 (190)
|+++++||+++|++||+|.... +.+..|++++.+|...|..+...+.++|+++||+++| .+|||
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~--~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg 78 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEY--SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG 78 (348)
T ss_pred CchHHHHHHHhccCCCCccccC--CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence 5789999999999999996543 6678899999999999874456899999999999999 78999
Q ss_pred cccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCC-----CCCcHHHHHHHHHHHhcccCCCCCCCCcccc--cc-
Q 029612 86 WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM-----ERDPTPLHRAAKLLINSQLEDGDFPQQELTG--VF- 157 (190)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~-----~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g--~~- 157 (190)
|+.... ....+++..|++++.+|..++.. ..+.+.++++++||+++|++||+|....... .|
T Consensus 79 w~y~~~----------~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~ 148 (348)
T cd02889 79 WAFSTA----------NQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYL 148 (348)
T ss_pred CcccCc----------CCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHH
Confidence 986411 12235567899999999887653 2244689999999999999999997421100 01
Q ss_pred --cCce----eec-cCCccchHHHHHHHHHHH
Q 029612 158 --MENC----MLH-YPIYRNIFPMWALAEYRS 182 (190)
Q Consensus 158 --~~~~----~~~-~~~~~~~~~l~aL~~~~~ 182 (190)
+..+ ... -....|.++|.||..+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~ 180 (348)
T cd02889 149 ELIPEVDGDIMIDPPYVECTGSVLEALGLFGK 180 (348)
T ss_pred hcCchhhcCCccCCCCcchHHHHHHHHHHhhh
Confidence 0000 000 023357889999987664
No 17
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.81 E-value=9.5e-21 Score=162.76 Aligned_cols=163 Identities=34% Similarity=0.617 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCc
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKK 97 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~ 97 (190)
.-|++++.||++.|.++|+|.+.|+++++|.|+.++.++...|....+...+++++.||..+|.+||||++....+..+.
T Consensus 352 ~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~ 431 (517)
T COG1657 352 QPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPV 431 (517)
T ss_pred CcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccc
Confidence 45899999999999999999999999999999999999999998655678999999999999999999999888877776
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHHH
Q 029612 98 YIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWAL 177 (190)
Q Consensus 98 ~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL 177 (190)
|.. ...+-...|+||+.++..+.... .+.+++++++|.+.|.++|.|...+.+|.|+.++++.|+.|...|++.+|
T Consensus 432 ~~~--t~~sl~~~~~wal~~~~~a~~~~--~~~i~~~~~~~~~~~~~~g~~~~~~~eg~~~~~~~~~~~~~~~~~p~~~l 507 (517)
T COG1657 432 YTG--TESSLLVQTNWALIALLTALEPN--QEAIKPGINLLVSDQEPDGSWREAEREGGFNCNFAIGYPYYLAYFPIIAL 507 (517)
T ss_pred ccc--ccchhhcchhHHHHHHHHhcccc--hhhhcccccccccCcCCCCccccceecccCCCCcceeeeeEEeecCchhh
Confidence 665 35677889999999999887763 33799999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 029612 178 AEYRSRL 184 (190)
Q Consensus 178 ~~~~~~~ 184 (190)
++|....
T Consensus 508 g~y~~~~ 514 (517)
T COG1657 508 GRYGGQY 514 (517)
T ss_pred ccccccc
Confidence 9987654
No 18
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.79 E-value=1.4e-18 Score=142.82 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCccccccc--chhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHhhccCCCccccC
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGI--CFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGGWGES 89 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~--~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~DGgw~~~ 89 (190)
+++..+.|+++++.+++.|++||+| +.|+. .++|.|+||+.+|..++.. ..+.+.++|+++||+++|++||+|.+.
T Consensus 47 ~~~~~~~i~~g~~r~l~~q~~dGsf-~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~ 125 (297)
T cd02896 47 RDEALKYIRQGYQRQLSYRKPDGSY-AAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEP 125 (297)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCc-cCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCC
Confidence 3578899999999999999999998 66643 5789999999999987642 246789999999999999999999988
Q ss_pred CCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCC-----CcHHHHHHHHHHHhcc
Q 029612 90 YRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMER-----DPTPLHRAAKLLINSQ 142 (190)
Q Consensus 90 ~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~-----~~~~i~~a~~~L~~~Q 142 (190)
.+.++..++.+.++.++++..|||++++|.+.+.... ...+|.||++||.+++
T Consensus 126 ~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~ 183 (297)
T cd02896 126 SPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQL 183 (297)
T ss_pred CCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhc
Confidence 7777655554322335788999999999999865311 1125555565555544
No 19
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.78 E-value=8.2e-20 Score=128.61 Aligned_cols=107 Identities=35% Similarity=0.493 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccC
Q 029612 20 IAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYI 99 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~ 99 (190)
|+++++||++.|++||+|...++. ....|++++.+|...+.. ...+.|+|+++||+++|++||||+..
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~-~~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~dG~w~~~---------- 68 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGS-DVFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNPDGGWGYS---------- 68 (109)
T ss_dssp -----------------------------------------TS--SSBSSHHHHHHHHH---TTS--S-T----------
T ss_pred Cccccccccccccccccccccccc-cccccccccccccccCCC-CcHHHHHHHHHHHHHhcCCCCCCCCc----------
Confidence 678999999999999999776653 356788888999888765 36789999999999999999999863
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc
Q 029612 100 PLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL 143 (190)
Q Consensus 100 ~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~ 143 (190)
.......|+.++.+|...+....++ +++|+++||+++|.
T Consensus 69 ----~~~~~~~t~~~~~~l~~~~~~~~~~-~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 69 ----GGEYVSMTAAAIAALALAGVYPDDE-AVERGLEWILSHQL 107 (109)
T ss_dssp ----S--HHHHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHH--
T ss_pred ----CCCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccC
Confidence 1233445555555555444433344 89999999999874
No 20
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.78 E-value=4e-18 Score=139.76 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccc----cchhhHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHhhccCCCcccc
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYGSWG----ICFTYAAWFAISGLVAAKK-TYSNCLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g----~~~~~~Ta~al~aL~~~g~-~~~~~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
++..+.|++++..|++.|++||+| +.|+ .+++|.|+||+.+|..++. ...+...|+|+++||+++|++||||++
T Consensus 45 ~~~~~~l~~g~~~~~~~q~~dGsf-~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 45 SKALGFLRTGYQRQLTYKHSDGSY-SAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCe-ecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 445567889999999999999998 6664 3478999999999998864 234678999999999999999999986
Q ss_pred CCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC
Q 029612 89 SYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE 144 (190)
Q Consensus 89 ~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~ 144 (190)
.....+..+ .+ +..+++..|||++++|.+.+....++ .|+++++||.+.+.+
T Consensus 124 ~~~~~~~~~-~~--~~~~~~~~TA~vl~aL~~~g~~~~~~-~i~~a~~yL~~~~~~ 175 (292)
T cd02897 124 VGRVFHKAM-QG--GVDDEVALTAYVLIALLEAGLPSERP-VVEKALSCLEAALDS 175 (292)
T ss_pred CCcccChhh-cC--CCCCCcchHHHHHHHHHhcCCccccH-HHHHHHHHHHHhccc
Confidence 533222110 01 22456789999999999998754333 899999999998764
No 21
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.77 E-value=3.9e-18 Score=152.31 Aligned_cols=153 Identities=17% Similarity=0.239 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcccc-----------------c-----ccchhhHHHHHHHHHHhcCCCC-CcHHHHH
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYGS-----------------W-----GICFTYAAWFAISGLVAAKKTY-SNCLAIR 70 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~~-----------------~-----g~~~~~~Ta~al~aL~~~g~~~-~~~~~i~ 70 (190)
...++.++++++||++.|++||+|..- + ..+++..|+.+|.+|...+... ...+.|+
T Consensus 384 ~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~ 463 (621)
T TIGR01787 384 HVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLE 463 (621)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHH
Confidence 345588999999999999999999520 0 1123357999999999887421 2357999
Q ss_pred HHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCC
Q 029612 71 KATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 150 (190)
Q Consensus 71 ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~ 150 (190)
||++||++.|++||+|.... .......|++++.+|...+....+...++++++||+++|++||||+.
T Consensus 464 rAl~~L~~~Q~~DGsw~g~w-------------g~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge 530 (621)
T TIGR01787 464 RALEYLRREQRADGSWFGRW-------------GVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGE 530 (621)
T ss_pred HHHHHHHHhcCCCCCCcccC-------------CCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCc
Confidence 99999999999999996431 12234569999999999876432324899999999999999999986
Q ss_pred CcccccccCcee---eccCCccchHHHHHHHHHH
Q 029612 151 QELTGVFMENCM---LHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 151 ~~~~g~~~~~~~---~~~~~~~~~~~l~aL~~~~ 181 (190)
...+ +....| -.-....|.++|+||-...
T Consensus 531 ~~~s--~~~~~y~~~~~S~~s~Ta~AL~AL~~ag 562 (621)
T TIGR01787 531 DCFS--YEDPSYVGSGGSTPSQTGWALMALIAAG 562 (621)
T ss_pred CCcc--ccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence 5421 111111 0113346899999997643
No 22
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.76 E-value=1.8e-17 Score=148.78 Aligned_cols=151 Identities=22% Similarity=0.326 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcccc---c--------------c-----cchhhHHHHHHHHHHhcCCCCCc-----H
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYGS---W--------------G-----ICFTYAAWFAISGLVAAKKTYSN-----C 66 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~~---~--------------g-----~~~~~~Ta~al~aL~~~g~~~~~-----~ 66 (190)
....+.|++|++||++.|++||+|..- . | .+++..|+.+|.+|...+..... .
T Consensus 396 ~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~ 475 (634)
T cd02892 396 KVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREID 475 (634)
T ss_pred hhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHH
Confidence 456689999999999999999999521 0 0 12345699999999998764322 3
Q ss_pred HHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCC
Q 029612 67 LAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM-ERDPTPLHRAAKLLINSQLED 145 (190)
Q Consensus 67 ~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~-~~~~~~i~~a~~~L~~~Q~~~ 145 (190)
+.++||++||++.|++||+|.... ....+..|++++.||..++.. ..+ ..++++++||+++|++|
T Consensus 476 ~~i~rAv~~L~~~Q~~DGsW~g~w-------------g~~~~Y~T~~al~AL~~~G~~~~~~-~~i~~a~~~L~s~Q~~D 541 (634)
T cd02892 476 PAIRRAVKYLLREQEPDGSWYGRW-------------GVCYIYGTWFALEALAAAGEDYENS-PYIRKACDFLLSKQNPD 541 (634)
T ss_pred HHHHHHHHHHHHccCCCCCccccC-------------CCccHHHHHHHHHHHHHhCCcccCc-HHHHHHHHHHHhcCCCC
Confidence 689999999999999999996431 234466799999999998765 323 48999999999999999
Q ss_pred CCCCCCcccccccCceee---ccCCccchHHHHHHHHH
Q 029612 146 GDFPQQELTGVFMENCML---HYPIYRNIFPMWALAEY 180 (190)
Q Consensus 146 Ggw~~~~~~g~~~~~~~~---~~~~~~~~~~l~aL~~~ 180 (190)
|||.....+ |+...+. .-..+.|.++|.||-.+
T Consensus 542 GgWge~~~s--~~~~~~~~~~~s~~~~TA~AllaLl~~ 577 (634)
T cd02892 542 GGWGESYLS--YEDKSYAGGGRSTVVQTAWALLALMAA 577 (634)
T ss_pred CCCCCcccc--ccCcccCCCCCCcHHHHHHHHHHHHHc
Confidence 999864311 1111110 11234578888888764
No 23
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.75 E-value=2.5e-17 Score=132.10 Aligned_cols=139 Identities=24% Similarity=0.357 Sum_probs=104.3
Q ss_pred HHHHHHHHhcccCCCccccc---ccchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHhhccCCCccccCCCccC---
Q 029612 22 KATKFIEDIQKSDGSWYGSW---GICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGGWGESYRSCP--- 94 (190)
Q Consensus 22 ~a~~~L~~~Q~~dGsw~~~~---g~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~--- 94 (190)
+|.+-+++.|++|||| +.| ..+++|.||||+..|..+... ..+...|+++++||+++|++||+|.+..+..+
T Consensus 1 ~GYqr~L~y~~~DGsf-s~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~ 79 (246)
T PF07678_consen 1 QGYQRQLSYRRSDGSF-SAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREM 79 (246)
T ss_dssp HHHHHHHTTB-TTSSB-BSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGG
T ss_pred CchHHHhcCCCCCCCe-eccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCcccccc
Confidence 4678899999999997 444 456899999999999988653 35789999999999999999999966422100
Q ss_pred --------------------------------------------------------------------------------
Q 029612 95 -------------------------------------------------------------------------------- 94 (190)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (190)
T Consensus 80 ~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 80 QGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDNIQDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp SGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGCTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence
Q ss_pred -------CCccCCCCC------------CCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccc
Q 029612 95 -------NKKYIPLDG------------NRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTG 155 (190)
Q Consensus 95 -------~~~~~~~~~------------~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g 155 (190)
+..|++.+. ...+++.|||+|+++...+ +.....+.++||.++|+.+|||.+++
T Consensus 160 ~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~----~~~~~~~iv~WL~~qr~~~Ggf~STQ--- 232 (246)
T PF07678_consen 160 SMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRG----DLEEASPIVRWLISQRNSGGGFGSTQ--- 232 (246)
T ss_dssp CHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHCTTTTSSTSSHH---
T ss_pred HhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhcCCCCccCcHH---
Confidence 011111001 0124788999999999883 33377789999999999999999988
Q ss_pred cccCceeeccCCccchHHHHHHHHHH
Q 029612 156 VFMENCMLHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~aL~~~~ 181 (190)
.|+++|+||++|.
T Consensus 233 -------------dTvvaL~AL~~Ya 245 (246)
T PF07678_consen 233 -------------DTVVALQALAEYA 245 (246)
T ss_dssp -------------HHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHh
Confidence 6899999999996
No 24
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.73 E-value=9.9e-17 Score=129.15 Aligned_cols=149 Identities=26% Similarity=0.378 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccc---cchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHhhccCCCccccC
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYGSWG---ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGGWGES 89 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g---~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~DGgw~~~ 89 (190)
.+....++++++||.+.|++||+|.. +. ...++.|++++.+|..++.. ....+.++++++||+++|++||+|...
T Consensus 48 ~~~~~~~~~~~~~l~~~q~~dG~~~~-~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~ 126 (300)
T cd00688 48 DKADENIEKGIQRLLSYQLSDGGFSG-WGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFRED 126 (300)
T ss_pred ccchHHHHHHHHHHHhccCCCCCccC-CCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeee
Confidence 45678999999999999999999843 33 35688999999999988763 125788999999999999999999765
Q ss_pred CCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCCcc
Q 029612 90 YRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYR 169 (190)
Q Consensus 90 ~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~ 169 (190)
...... .+...+++..|++++.+|...+.... ...++++++||.++|+++|+|. .. . ....+.
T Consensus 127 ~~~~~~-----~~~~~~~~~~t~~al~aL~~~~~~~~-~~~~~~~~~~l~~~q~~~g~~~-~~---~-------~~~~~~ 189 (300)
T cd00688 127 GPGNHR-----IGGDESDVRLTAYALIALALLGKLDP-DPLIEKALDYLLSCQNYDGGFG-PG---G-------ESHGYG 189 (300)
T ss_pred cCCCCc-----ccCCCCcccHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHhcCCCCcC-CC---c-------cccHHH
Confidence 321110 01246788899999999999887532 3489999999999999999992 11 0 113445
Q ss_pred chHHHHHHHHH
Q 029612 170 NIFPMWALAEY 180 (190)
Q Consensus 170 ~~~~l~aL~~~ 180 (190)
+..++.||..+
T Consensus 190 t~~~~~aL~~~ 200 (300)
T cd00688 190 TACAAAALALL 200 (300)
T ss_pred HHHHHHHHHHc
Confidence 77788888664
No 25
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.70 E-value=3.6e-16 Score=125.91 Aligned_cols=142 Identities=29% Similarity=0.453 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCC
Q 029612 17 KNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNK 96 (190)
Q Consensus 17 ~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~ 96 (190)
.+.++++++||.++|++||+| ..++...++.|++++.+|...+.. ....++++++||+++|.+||||+....
T Consensus 159 ~~~~~~~~~~l~~~q~~~g~~-~~~~~~~~~~t~~~~~aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~~~----- 230 (300)
T cd00688 159 DPLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAAAALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEGRD----- 230 (300)
T ss_pred cHHHHHHHHHHHHHhcCCCCc-CCCccccHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCcccc-----
Confidence 467999999999999999999 677778889999999999998875 357899999999999999999976421
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHH
Q 029612 97 KYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWA 176 (190)
Q Consensus 97 ~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~a 176 (190)
.....+++..|.+++.+|...+... +...+.++++||+++|+++|+|...+. .....+.+.++|+|
T Consensus 231 ----~~~~~~~~~~~~~~~~aL~~~~~~~-~~~~~~~~~~~L~~~q~~~G~w~~~~~---------~~~~~~~t~~al~a 296 (300)
T cd00688 231 ----RTNKLSDSCYTEWAAYALLALGKLG-DLEDAEKLVKWLLSQQNEDGGFSSKPG---------KSYDTQHTVFALLA 296 (300)
T ss_pred ----CCCCcCchHHHHHHHHHHHHHhhhc-CcccHHHHHHHHHhccCCCCCcCcCCC---------CCCcchhhHHHHHH
Confidence 0134677888888898888876531 223789999999999999999987542 12345679999999
Q ss_pred HHHH
Q 029612 177 LAEY 180 (190)
Q Consensus 177 L~~~ 180 (190)
|+.|
T Consensus 297 L~~~ 300 (300)
T cd00688 297 LSLY 300 (300)
T ss_pred HhcC
Confidence 9864
No 26
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.70 E-value=4e-16 Score=127.74 Aligned_cols=130 Identities=28% Similarity=0.404 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcccc-cccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCcc
Q 029612 15 EVKNFIAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSC 93 (190)
Q Consensus 15 ~~~~~i~~a~~~L~~~Q~~dGsw~~~-~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~ 93 (190)
.+++.+++.++||.+.|++||+|.+. ++.+.+..|..++.+|...+.. +...++++++||+++|++||||+..
T Consensus 97 ~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~--~~i~~~~~~~~l~~~q~~dGGF~~~---- 170 (287)
T cd02894 97 KIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKL--DLIDVDKAVDYLLSCYNFDGGFGCR---- 170 (287)
T ss_pred hccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCc--chhhHHHHHHHHHHcCCCCCCcCCC----
Confidence 35556899999999999999999764 6666666677777777766643 3456899999999999999999864
Q ss_pred CCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCcee
Q 029612 94 PNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 94 ~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~ 162 (190)
+ +..+++..|.+++.+|...+.... . .+++.++||.++|+++|||...+ +..++.||
T Consensus 171 ------~--~~es~~~~t~cavasL~llg~~~~-~-~~~~~~~~L~~~q~~~GGf~gr~--~k~~D~~y 227 (287)
T cd02894 171 ------P--GAESHAGQIFCCVGALAILGSLDL-I-DRDRLGWWLCERQLPSGGLNGRP--EKLPDVCY 227 (287)
T ss_pred ------C--CCCCchhHHHHHHHHHHHcCcccc-c-CHHHHHHHHHHhCCCCCCcCCCC--CCCCchhH
Confidence 1 467889999999999998876532 2 57889999999999999997554 23444444
No 27
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.65 E-value=3e-15 Score=122.35 Aligned_cols=126 Identities=29% Similarity=0.377 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhcccCCCcccc-cccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCc
Q 029612 19 FIAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKK 97 (190)
Q Consensus 19 ~i~~a~~~L~~~Q~~dGsw~~~-~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~ 97 (190)
.++++++||.+.|++||+|... ++.+.++.|.++|.+|...|... ...+++.++||+++|++||||+..
T Consensus 99 ~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~-------- 168 (286)
T cd02890 99 DREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT--DIDKEKLIDYILSCQNYDGGFGGV-------- 168 (286)
T ss_pred hHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch--hhhHHHHHHHHHHhCCCCCCcCCC--------
Confidence 3678999999999999999653 46667788889999999988752 568999999999999999999864
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCC-CCCCCcccccccCcee
Q 029612 98 YIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDG-DFPQQELTGVFMENCM 162 (190)
Q Consensus 98 ~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~G-gw~~~~~~g~~~~~~~ 162 (190)
+ +..+++..|.+++.+|...+... +..+++.++||+++|+.+| ||...+ +..++.||
T Consensus 169 --~--~~es~~~~t~~av~sL~~l~~~~--~~~~~~~~~~L~~~q~~~ggGf~g~~--~~~~d~~y 226 (286)
T cd02890 169 --P--GAESHGGYTFCAVASLALLGRLD--LIDKERLLRWLVERQLASGGGFNGRP--NKLVDTCY 226 (286)
T ss_pred --C--CCCCCccHhHHHHHHHHHcCCCc--ccCHHHHHHHHHHhCCCCCCCcCCCC--CCCCccch
Confidence 1 45788899999999999888753 2368899999999999887 886543 23444444
No 28
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.61 E-value=1.1e-14 Score=120.76 Aligned_cols=125 Identities=23% Similarity=0.399 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcccCCCccc-ccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCcc
Q 029612 20 IAKATKFIEDIQKSDGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKY 98 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~-~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~ 98 (190)
.++.++||.+.|++||+|.+ .++...+..|.+|+.++...+.. +...++++++||+++|++||||+..
T Consensus 106 ~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~--~~i~~~~~~~~i~scq~~dGGF~~~--------- 174 (316)
T PLN03201 106 ADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL--DKINVEKAVDYIVSCKNFDGGFGCT--------- 174 (316)
T ss_pred HHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHhcCCCCCcCCC---------
Confidence 56799999999999999976 56767676677777777777653 2356899999999999999999864
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCcee
Q 029612 99 IPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 99 ~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~ 162 (190)
| +..++...|.+++.+|...+..... ..++.++||+++|..+|||..++ +..++.||
T Consensus 175 -p--~~esh~g~T~caiaaL~llg~~~~~--d~~~l~~wL~~rQ~~~GGf~grp--~k~~D~cy 231 (316)
T PLN03201 175 -P--GGESHAGQIFCCVGALAITGSLHHV--DKDLLGWWLCERQVKSGGLNGRP--EKLPDVCY 231 (316)
T ss_pred -C--CCCCccceehHHHHHHHHcCccccC--CHHHHHHHHHHhCCCCCCcCCCC--CCCCchHH
Confidence 1 4678888899999888887754311 23557899999999999998665 35666666
No 29
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.60 E-value=1.1e-14 Score=118.37 Aligned_cols=125 Identities=22% Similarity=0.298 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCcccccc---cchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHhhccCCCcccc
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSWG---ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g---~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
+.++.+.|++++++|.+.|++||+| +-|+ .++++.|++|+.+|..++.. ..+.+.++|+++||++.|++||+|.+
T Consensus 44 ~~~~~~~i~~~~~~l~~~Q~~dGgf-~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~ 122 (282)
T cd02891 44 REKALEYIRKGYQRLLTYQRSDGSF-SAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRE 122 (282)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCc-cccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCC
Confidence 4578899999999999999999998 5554 45789999999999876432 23578999999999999999999987
Q ss_pred CCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc
Q 029612 89 SYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL 143 (190)
Q Consensus 89 ~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~ 143 (190)
....+..+. .+ ...+.+..|+|++++|...+... ...+.++++||.++..
T Consensus 123 ~~~~~~~~~-~~--~~~~~~~~tA~al~~L~~~g~~~--~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 123 LGPVIHREM-KG--GVDDSVSLTAYVLIALAEAGKAC--DASIEKALAYLETQLD 172 (282)
T ss_pred CCCccCHhh-cC--CcCCCcchHHHHHHHHHHhcccc--hHHHHHHHHHHHHhcc
Confidence 644332211 01 23456778999999999988753 3488999999998775
No 30
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.58 E-value=6.3e-14 Score=114.55 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHhc-ccCCCccccc-ccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccC
Q 029612 17 KNFIAKATKFIEDIQ-KSDGSWYGSW-GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCP 94 (190)
Q Consensus 17 ~~~i~~a~~~L~~~Q-~~dGsw~~~~-g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~ 94 (190)
...++++++||+++| ++||+|.... +.+.+..|.+++.+|...|........++++++||.++|++||||+...
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~---- 121 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDL---- 121 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCC----
Confidence 467899999999999 9999986532 3456678999999999998630123567789999999999999997641
Q ss_pred CCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 95 NKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 95 ~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
...+++..|-+++.+|...+... + ..+++.++||.++|++||||...+
T Consensus 122 --------~~~~d~~~ty~al~~l~ll~~~~-~-~~~~~~~~~l~~~Q~~dGGf~~~~ 169 (286)
T cd02890 122 --------GGEVDTRFVYCALSILSLLNILT-D-IDKEKLIDYILSCQNYDGGFGGVP 169 (286)
T ss_pred --------CCCchHHHHHHHHHHHHHhCCch-h-hhHHHHHHHHHHhCCCCCCcCCCC
Confidence 34678888888888888877643 2 378899999999999999998653
No 31
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.54 E-value=1.8e-13 Score=113.11 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcccCCCcccc----cccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCC
Q 029612 20 IAKATKFIEDIQKSDGSWYGS----WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPN 95 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~----~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~ 95 (190)
.++.++||.+.|++||+|.+. ++......|.++|.+|...+.........++.++||+++|++||||+..
T Consensus 114 r~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~------ 187 (307)
T cd02895 114 RKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQG------ 187 (307)
T ss_pred HHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCC------
Confidence 578999999999999999765 3566667788888888888754211245789999999999999999864
Q ss_pred CccCCCCCCCCcHHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHhcccCCCCCCCCcccccccCcee
Q 029612 96 KKYIPLDGNRSNLVQTAWAMMSLIHAGQMER-DPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 96 ~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~-~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~ 162 (190)
+ +.+++...|-+|+.+|...+.... ....+++.++||+++|+.+|||..++ +..++.||
T Consensus 188 ----~--~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~--~k~~D~cy 247 (307)
T cd02895 188 ----P--GLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRP--NKPADTCY 247 (307)
T ss_pred ----C--CCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCC--CCCCccch
Confidence 1 456777788888888877766421 12367889999999999999997654 34555554
No 32
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.52 E-value=2.3e-13 Score=111.47 Aligned_cols=135 Identities=16% Similarity=0.261 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhcccCCCccccc-ccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCc
Q 029612 19 FIAKATKFIEDIQKSDGSWYGSW-GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKK 97 (190)
Q Consensus 19 ~i~~a~~~L~~~Q~~dGsw~~~~-g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~ 97 (190)
.++++++||.++|++||+|.+.. +.+.+..|.+++.+|...|.. +...+.++++||+++|+++|||...
T Consensus 149 ~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~--~~~~~~~~~~~L~~~q~~~GGf~gr-------- 218 (287)
T cd02894 149 DVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSL--DLIDRDRLGWWLCERQLPSGGLNGR-------- 218 (287)
T ss_pred hHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcc--cccCHHHHHHHHHHhCCCCCCcCCC--------
Confidence 47999999999999999996643 445666799999999999875 2345889999999999999999653
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc-CCCCCCCCcccccccCceeeccCCccchHHHHH
Q 029612 98 YIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL-EDGDFPQQELTGVFMENCMLHYPIYRNIFPMWA 176 (190)
Q Consensus 98 ~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~-~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~a 176 (190)
++..+|+..|-|++.+|...+.... ...++..+||+++|+ ++|||...+ +..+ ++|.|.++|-+
T Consensus 219 ----~~k~~D~~ysf~~~a~l~~l~~~~~--~~~~~l~~~l~~~q~~~~GGf~~~p--~~~~-------D~~ht~~~l~~ 283 (287)
T cd02894 219 ----PEKLPDVCYSWWVLSSLKIIGRLHW--INKNKLKNFILACQDEEDGGFADRP--GNMV-------DVFHTFFGLAG 283 (287)
T ss_pred ----CCCCCchhHhhHHHHHHHHhccccc--cCHHHHHHHHHHhcCCCCCCcCCCC--CCCC-------ChhHHHHHHHH
Confidence 1456888888888888877665421 146678999999994 789997644 2333 44568888888
Q ss_pred HH
Q 029612 177 LA 178 (190)
Q Consensus 177 L~ 178 (190)
|+
T Consensus 284 Ls 285 (287)
T cd02894 284 LS 285 (287)
T ss_pred HH
Confidence 86
No 33
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.51 E-value=4.5e-13 Score=110.35 Aligned_cols=125 Identities=22% Similarity=0.332 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcccCCCcccc-cccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCcc
Q 029612 20 IAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKY 98 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~-~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~ 98 (190)
.++.++||.+.|++||+|... .+.+.+..|..++..+...+.. ....++++++||+++|++||||+..
T Consensus 100 ~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~--~~~~~~~~~~~l~~cQ~~dGGF~~~--------- 168 (299)
T cd02893 100 REALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNIL--TDELFEGVAEYILSCQTYEGGFGGV--------- 168 (299)
T ss_pred HHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCC--chhhHHHHHHHHHHcCCCCCCcCCC---------
Confidence 356999999999999999653 3444555555566555555653 3467899999999999999999853
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC-CCCCCCCcccccccCcee
Q 029612 99 IPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE-DGDFPQQELTGVFMENCM 162 (190)
Q Consensus 99 ~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~-~Ggw~~~~~~g~~~~~~~ 162 (190)
| +..++...|.+++.+|...+.... . .+++.++||+++|.+ +|||..++ +..++.||
T Consensus 169 -p--~~e~h~~yTfcavasL~llg~~~~-~-d~~~l~~wl~~~q~~~~GGf~grp--~k~~D~cy 226 (299)
T cd02893 169 -P--GNEAHGGYTFCALAALAILGKPDK-L-DLESLLRWLVARQMRFEGGFQGRT--NKLVDGCY 226 (299)
T ss_pred -C--CCCCCccHHHHHHHHHHHcCCccc-c-CHHHHHHHHHhhcCCCCCCcCCCC--CCCCccHH
Confidence 2 567888899999999888876431 2 577899999999987 89997655 35666665
No 34
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.46 E-value=3e-12 Score=105.47 Aligned_cols=121 Identities=15% Similarity=0.218 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcccCCCccccc-ccchhhHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHhhccCCCccccCCCccCC
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSW-GICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCEDGGWGESYRSCPN 95 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~-g~~~~~~Ta~al~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~ 95 (190)
...++.++||.+.|++||+|.+.. ..+....|-+++.+|...+... ...-..+++++||.++|++||||+..
T Consensus 47 ~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~------ 120 (299)
T cd02893 47 SYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMH------ 120 (299)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCC------
Confidence 457899999999999999986642 2455667888888888887531 12234456999999999999999864
Q ss_pred CccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 96 KKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 96 ~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
+ +.++|.-.|-.++..+...+.. ++..+++.++||.++|+.||||...+
T Consensus 121 ----~--~~e~D~r~tycava~~~lL~~~--~~~~~~~~~~~l~~cQ~~dGGF~~~p 169 (299)
T cd02893 121 ----V--GGEVDVRGTYCAISVASLLNIL--TDELFEGVAEYILSCQTYEGGFGGVP 169 (299)
T ss_pred ----C--CCCchHhHHHHHHHHHHHhCCC--chhhHHHHHHHHHHcCCCCCCcCCCC
Confidence 1 3455655543343333333332 23368899999999999999997643
No 35
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.44 E-value=1.7e-12 Score=107.22 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcccCCCcccc-cccchhhHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHhhccCCCccccCCCccCCC
Q 029612 19 FIAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNK 96 (190)
Q Consensus 19 ~i~~a~~~L~~~Q~~dGsw~~~-~g~~~~~~Ta~al~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~ 96 (190)
-.++.++||.++|++||+|... ++.+....|.+++.+|...+... .....+++.++||+++|+++|||+..
T Consensus 166 d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr------- 238 (307)
T cd02895 166 DKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR------- 238 (307)
T ss_pred cHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC-------
Confidence 3689999999999999998542 33444556888999998887641 02457889999999999999999753
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc-CCCCCCCCcccccccCceeeccCCccchHHHH
Q 029612 97 KYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL-EDGDFPQQELTGVFMENCMLHYPIYRNIFPMW 175 (190)
Q Consensus 97 ~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~-~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~ 175 (190)
++..+|+..|-|++.+|.-.+... ....++..+||+++|+ .+|||...+ |..| .+|.|.++|.
T Consensus 239 -----~~k~~D~cysfw~~a~L~iL~~~~--~id~~~l~~~l~~~q~~~~GGf~~~p--~~~~-------D~~ht~~~la 302 (307)
T cd02895 239 -----PNKPADTCYSFWVGASLKLLDAFQ--LIDFEKNRNYLLSTQQSLVGGFAKNP--DSHP-------DPLHSYLGLA 302 (307)
T ss_pred -----CCCCCccchhhHHHHHHHHcCccc--ccCHHHHHHHHHHHcCCCCCCcCCCC--CCCC-------ChhHHHHHHH
Confidence 255778888888888887776532 1246778999999885 589998665 2233 3456889999
Q ss_pred HHH
Q 029612 176 ALA 178 (190)
Q Consensus 176 aL~ 178 (190)
||+
T Consensus 303 ~Ls 305 (307)
T cd02895 303 ALS 305 (307)
T ss_pred HHH
Confidence 886
No 36
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.44 E-value=4.1e-12 Score=105.40 Aligned_cols=117 Identities=16% Similarity=0.198 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcccCCCcccccc-cchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCcc
Q 029612 20 IAKATKFIEDIQKSDGSWYGSWG-ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKY 98 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~~g-~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~ 98 (190)
.++.++||.++|++||+|.+.-+ ......|..++.+|...+.. ..-..+++++||.++|++||||+...
T Consensus 58 ~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~--~~id~~~~~~~l~s~Q~~dGgF~~~~-------- 127 (316)
T PLN03201 58 RDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRL--DLLDADKVASYVAGLQNEDGSFSGDE-------- 127 (316)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHhcCCCCCccCCC--------
Confidence 58899999999999999865322 23444577788777766432 23446679999999999999997531
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 99 IPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 99 ~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
....++-.|-.|+.+|...+.. +...++++++||.++|++||||...+
T Consensus 128 ----~ge~D~r~ty~a~a~l~LL~~~--~~i~~~~~~~~i~scq~~dGGF~~~p 175 (316)
T PLN03201 128 ----WGEIDTRFSYCALCCLSLLKRL--DKINVEKAVDYIVSCKNFDGGFGCTP 175 (316)
T ss_pred ----CCCccHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHhcCCCCCcCCCC
Confidence 3455664444444444333332 22367899999999999999998654
No 37
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.43 E-value=2.5e-12 Score=109.98 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcccCCCcccc-cccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCcc
Q 029612 20 IAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKY 98 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~-~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~ 98 (190)
.++.++||.+.|++||+|.+. ++...+..|-.++..+...+.. +...+++.++||+++|+.||||+..
T Consensus 145 r~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l--~~~~~e~~~~~I~scQ~~dGGF~g~--------- 213 (439)
T PLN02710 145 REKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL--DDELVKGVGDYILSCQTYEGGIGGE--------- 213 (439)
T ss_pred HHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC--chhhHHHHHHHHHHhCCCCCCCCCC---------
Confidence 577899999999999998652 3444444455555555555543 3457889999999999999999864
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHHHH
Q 029612 99 IPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALA 178 (190)
Q Consensus 99 ~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~ 178 (190)
++..++...|-+++.+|...+.... ..+.+.++||+++|..+|||..++ +..++.||. .|++-+|+
T Consensus 214 ---P~~EaH~gyTfcavAsL~LLg~l~~--id~~~l~~WL~~rQ~~~GGF~GR~--nKl~D~CYS-------fW~~a~L~ 279 (439)
T PLN02710 214 ---PGAEAHGGYTFCGLAAMILINEVDR--LDLPSLINWVVFRQGVEGGFQGRT--NKLVDGCYS-------FWQGGVFA 279 (439)
T ss_pred ---CCCCCchHHHHHHHHHHHHcCCccc--cCHHHHHHHHHHhcCcCCCcCCCC--CCCCCchhh-------HHHHHHHH
Confidence 2567888888888888877765431 246778999999999999998665 457777772 45555554
Q ss_pred HHH
Q 029612 179 EYR 181 (190)
Q Consensus 179 ~~~ 181 (190)
=..
T Consensus 280 lL~ 282 (439)
T PLN02710 280 LLQ 282 (439)
T ss_pred HHH
Confidence 433
No 38
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.43 E-value=3.7e-14 Score=99.65 Aligned_cols=68 Identities=31% Similarity=0.505 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCC
Q 029612 69 IRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDF 148 (190)
Q Consensus 69 i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw 148 (190)
|+++++||++.|++||||+.. ..++...|++++++|...+.....+ +|+|+++||+++|++||+|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~--------------~~~~~~~t~~~~~al~~~~~~~~~~-ai~ka~~~l~~~Q~~dG~w 65 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYN--------------WGSDVFVTAALILALAAAGDAAVDE-AIKKAIDWLLSHQNPDGGW 65 (109)
T ss_dssp ------------------------------------------------------TS-SSB-SSHHHHHHHHH---TTS--
T ss_pred Ccccccccccccccccccccc--------------ccccccccccccccccccCCCCcHH-HHHHHHHHHHHhcCCCCCC
Confidence 689999999999999999753 1256788999999998887654445 8999999999999999999
Q ss_pred CCC
Q 029612 149 PQQ 151 (190)
Q Consensus 149 ~~~ 151 (190)
...
T Consensus 66 ~~~ 68 (109)
T PF13243_consen 66 GYS 68 (109)
T ss_dssp S-T
T ss_pred CCc
Confidence 865
No 39
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.39 E-value=7.6e-13 Score=93.24 Aligned_cols=85 Identities=32% Similarity=0.497 Sum_probs=60.9
Q ss_pred HHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHH--HHHHHhcccCCCCCCC
Q 029612 73 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRA--AKLLINSQLEDGDFPQ 150 (190)
Q Consensus 73 ~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a--~~~L~~~Q~~~Ggw~~ 150 (190)
|+||+++|++||||+.. +..+++..|++++++|...+... + .+++ ++||.++|++||+|..
T Consensus 1 v~~L~~~Q~~dGgw~~~-------------~~~~~~~~T~~al~aL~~~g~~~-~---~~~~~~~~~L~~~q~~dGg~~~ 63 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-------------GGPSDVWDTAFALLALAALGEEP-D---RDRAAAVEWLLSQQNPDGGWGS 63 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-------------TS-BEHHHHHHHHHHHHHHTSHH-C---HHHHHHHHHHHHHB-TTSGBBS
T ss_pred CHhhHHHcCCCCCCcCC-------------CCCCCHHHHHHHHHHHHHhCCcc-c---HHHHHHHHHHHHhCCCCCCccC
Confidence 68999999999999863 24788999999999999988743 2 4445 9999999999999987
Q ss_pred CcccccccCceeeccCCccchHHHHHHHHHHH
Q 029612 151 QELTGVFMENCMLHYPIYRNIFPMWALAEYRS 182 (190)
Q Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~ 182 (190)
....+ +. ..+.+.+++.+|.....
T Consensus 64 ~~~~~--~~------~~~~t~~~l~~l~~~~~ 87 (113)
T PF13249_consen 64 NPDGG--PP------DVYTTYVALAALELLGR 87 (113)
T ss_dssp STTTT---B------SHHHHHHHHHHHHHHT-
T ss_pred CCCCC--Cc------cHHHHHHHHHHHHHcCC
Confidence 55211 11 12356778888755443
No 40
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-11 Score=97.10 Aligned_cols=148 Identities=24% Similarity=0.386 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhcccCCCccc-ccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCcc-----
Q 029612 20 IAKATKFIEDIQKSDGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSC----- 93 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~-~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~----- 93 (190)
.++-+.|+...|++||||.+ .||...+..+..+|.+|+..|.- +.-.+++|++|++++-|-|||||....+-
T Consensus 116 ~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~l--d~~nve~aVd~~~~CyN~DGGFG~~pGaESHagq 193 (329)
T KOG0366|consen 116 RDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKL--DTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQ 193 (329)
T ss_pred HHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhH--HHhhHHHHHHHHHhhcccCCCcCCCCCcccccce
Confidence 34568899999999999976 58888888888888889888875 35789999999999999999998764311
Q ss_pred -------------------------------CCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Q 029612 94 -------------------------------PNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQ 142 (190)
Q Consensus 94 -------------------------------~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q 142 (190)
..+...+-+..-+++...-|+|-.|.-.|+.. ...-++-++|++++|
T Consensus 194 ifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~--wId~ekL~~FIl~cQ 271 (329)
T KOG0366|consen 194 IFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLH--WIDREKLTKFILACQ 271 (329)
T ss_pred ehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhh--hccHHHHHHHHHhcC
Confidence 01111111233467888888888887777643 113455789999999
Q ss_pred c-CCCCCCCCcccccccCceeeccCCccchHHHHHHHHH
Q 029612 143 L-EDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 180 (190)
Q Consensus 143 ~-~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~ 180 (190)
. +.|||.+++-.-+ .+|.|.|++-+|+-.
T Consensus 272 d~~~GGfsDRpgd~~---------D~fHt~FgiAGLSLl 301 (329)
T KOG0366|consen 272 DEETGGFSDRPGDEV---------DIFHTLFGIAGLSLL 301 (329)
T ss_pred CCCCCCcCCCCCCcc---------cHHHHHHHHhhHhhh
Confidence 8 7899987762211 455788999988753
No 41
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.32 E-value=1.2e-11 Score=108.67 Aligned_cols=151 Identities=23% Similarity=0.311 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcccCCCccc-------cc----------c-----cchhhHHHHHHHHHHhcCCC-C-----CcHHHH
Q 029612 18 NFIAKATKFIEDIQKSDGSWYG-------SW----------G-----ICFTYAAWFAISGLVAAKKT-Y-----SNCLAI 69 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~-------~~----------g-----~~~~~~Ta~al~aL~~~g~~-~-----~~~~~i 69 (190)
+.+-.+++.|+..|..+|++.. .| + ..++..|.-+|.+|....+. + .....|
T Consensus 512 erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i 591 (760)
T KOG0497|consen 512 ERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSI 591 (760)
T ss_pred HHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHH
Confidence 6788999999999999998531 01 1 12445699999999987543 1 236788
Q ss_pred HHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCC
Q 029612 70 RKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFP 149 (190)
Q Consensus 70 ~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~ 149 (190)
.+|++||.+.|.+||+|..++..|. ...|=+++-+|.++|+.-.+-.+++||++||++.|+++|||+
T Consensus 592 ~~av~~ie~~Q~~DGSWyGsWgvCF-------------tY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWg 658 (760)
T KOG0497|consen 592 EKAVEFIEKLQLPDGSWYGSWGVCF-------------TYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWG 658 (760)
T ss_pred HHHHHHHHHcCCCCCcccchhhHHH-------------HHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCc
Confidence 9999999999999999976644432 345778899999998865455699999999999999999998
Q ss_pred CCccc---ccccCceeeccCCccchHHHHHHHHHH
Q 029612 150 QQELT---GVFMENCMLHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 150 ~~~~~---g~~~~~~~~~~~~~~~~~~l~aL~~~~ 181 (190)
..+.+ ..|-....=.--.-.|.++|+||-.+.
T Consensus 659 Es~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~ 693 (760)
T KOG0497|consen 659 ESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAG 693 (760)
T ss_pred cccccCccccccccccccccchhHHHHHHHHHhcC
Confidence 65422 122211111112335889999997754
No 42
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.28 E-value=6.8e-11 Score=101.21 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcccCCCcccccc-cchhhHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHhhccCCCccccCCCccCCC
Q 029612 19 FIAKATKFIEDIQKSDGSWYGSWG-ICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNK 96 (190)
Q Consensus 19 ~i~~a~~~L~~~Q~~dGsw~~~~g-~~~~~~Ta~al~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~ 96 (190)
..++.++||.++|++||+|.+..| .+....|-++|.+|...|... -..-...+.++||.++|++||||+...
T Consensus 93 ~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~------ 166 (439)
T PLN02710 93 LENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHD------ 166 (439)
T ss_pred HHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCC------
Confidence 457899999999999999965433 234556888888888887531 012245678999999999999997631
Q ss_pred ccCCCCCCCCcH--HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 97 KYIPLDGNRSNL--VQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 97 ~~~~~~~~~s~~--~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
++.+++ ..+|.+++.|+ +.. ++..+++.++||+++|+.+|||...+
T Consensus 167 ------~gE~D~R~tYcAlail~LL--~~l--~~~~~e~~~~~I~scQ~~dGGF~g~P 214 (439)
T PLN02710 167 ------GGEMDVRACYTAISVASLL--NIL--DDELVKGVGDYILSCQTYEGGIGGEP 214 (439)
T ss_pred ------CCCCCcCCcHHHHHHHHHh--CcC--chhhHHHHHHHHHHhCCCCCCCCCCC
Confidence 234443 34455544443 332 22367889999999999999998654
No 43
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.5e-10 Score=93.66 Aligned_cols=124 Identities=23% Similarity=0.317 Sum_probs=86.8
Q ss_pred HHHHHHHHhcccCCCccc-ccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCC
Q 029612 22 KATKFIEDIQKSDGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIP 100 (190)
Q Consensus 22 ~a~~~L~~~Q~~dGsw~~-~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~ 100 (190)
.-.+||...|+|||+|.+ .+|...+..--.++..|...|.. +.+....+++||.++||=||||+.- |
T Consensus 130 ~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~--~~~~~e~~vdyl~kCqnyeGGFg~~----------p 197 (342)
T COG5029 130 SLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDL--DKELFEGAVDYLKKCQNYEGGFGLC----------P 197 (342)
T ss_pred HHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhc--chhhhHHHHHHHHHhhccCCcccCC----------C
Confidence 578999999999999975 35555444433334444444543 4577788999999999999999863 1
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCcee
Q 029612 101 LDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 101 ~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~ 162 (190)
+.++....|-.+|.+|...+..+.-. .+++-+.||.++|-+.||+..+.- ..++.||
T Consensus 198 --~aEaHag~tFcalaalalL~~Ld~ls-~~E~l~~Wl~~RQ~ssgGl~GR~n--Kl~D~CY 254 (342)
T COG5029 198 --YAEAHAGYTFCALAALALLGKLDKLS-DVEKLIRWLAERQLSSGGLNGRSN--KLVDTCY 254 (342)
T ss_pred --chhhccchHHHHHHHHHHHhcccccc-hHHHHHHHHHHcccccCCcCCCcc--cCccchh
Confidence 34556666666666666555543211 378899999999999999976652 5777776
No 44
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.18 E-value=5.8e-10 Score=90.57 Aligned_cols=143 Identities=22% Similarity=0.221 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccccc----------chhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC-CC
Q 029612 16 VKNFIAKATKFIEDIQKSDGSWYGSWGI----------CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE-DG 84 (190)
Q Consensus 16 ~~~~i~~a~~~L~~~Q~~dGsw~~~~g~----------~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~-DG 84 (190)
.++.|+++++||.+.|.+||+|...+.. .....|++++.+|...|... ...+.++++||.+.... .-
T Consensus 99 ~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~--~~~~~~a~~~L~~~~~~~~~ 176 (282)
T cd02891 99 DENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKAC--DASIEKALAYLETQLDGLLD 176 (282)
T ss_pred CHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcccc--hHHHHHHHHHHHHhcccCCC
Confidence 3478999999999999999999654332 22356999999999998752 57889999999876642 11
Q ss_pred ccccC---------C---C-------------ccCCC-----ccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHH
Q 029612 85 GWGES---------Y---R-------------SCPNK-----KYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRA 134 (190)
Q Consensus 85 gw~~~---------~---~-------------~~~~~-----~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a 134 (190)
.++.. . . ..... .+..-.++...+..|+++|++....+. .....+.
T Consensus 177 ~~~~a~la~al~~~g~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~~----~~~~~~~ 252 (282)
T cd02891 177 PYALAILAYALALAGDSTRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLGD----LEEAGPI 252 (282)
T ss_pred hHHHHHHHHHHHHcCccHHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcCC----hhhHHHH
Confidence 11000 0 0 00000 011101234456778888888765442 2256778
Q ss_pred HHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHHHHHH
Q 029612 135 AKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 180 (190)
Q Consensus 135 ~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~ 180 (190)
++||.++++.+|+|..++ .++++|.||++|
T Consensus 253 ~~~L~~~~~~~~~~~sTq----------------~t~~al~AL~~y 282 (282)
T cd02891 253 AKWLAQQRNSGGGFLSTQ----------------DTVVALQALAAY 282 (282)
T ss_pred HHHHHHcCCCCCCcccHH----------------HHHHHHHHHHhC
Confidence 999999888899999877 688999999875
No 45
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.1e-10 Score=107.10 Aligned_cols=154 Identities=18% Similarity=0.280 Sum_probs=114.4
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCccccccc----chhhHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHhhccCCCccc
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGI----CFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCEDGGWG 87 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~----~~~~~Ta~al~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q~~DGgw~ 87 (190)
++...+.++.+++-++..+++|||| ..||. .++|.|||+|..|.++.... .+...+.++++||..+|.++|+|.
T Consensus 966 k~ka~~~l~~GyqrqL~yk~~DgSy-SaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 966 KRKALKFLEQGYQRQLTYKRADGSY-SAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCh-hhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEe
Confidence 4456688999999999999999997 44554 47999999999999986532 367889999999999999999985
Q ss_pred cCCCccCC------------------------------------------------------------------------
Q 029612 88 ESYRSCPN------------------------------------------------------------------------ 95 (190)
Q Consensus 88 ~~~~~~~~------------------------------------------------------------------------ 95 (190)
+.....++
T Consensus 1045 e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ayAl~l~~sp~a~~~~~~l~ 1124 (1436)
T KOG1366|consen 1045 EVGEVLHNEMQGGLQDIVALTAIVLSVILDVDNASIQKAVAYLEESLDSGSMDVYTVAITAYALQLAKSPQAAKALAKLK 1124 (1436)
T ss_pred ccccccchhhhcCCCCcceeeeEeeeeeccchhhHHHHHHHHHhhccCccccccchHHHHHHHHHhccCchHHHHHHhhh
Confidence 54210000
Q ss_pred -------C-c-cC------------CCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Q 029612 96 -------K-K-YI------------PLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELT 154 (190)
Q Consensus 96 -------~-~-~~------------~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~ 154 (190)
. . |+ ......-+++.|+|||+++......+ .+...++||.++++..|||.+++
T Consensus 1125 ~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~~~~~~~~~----~~~pivrWl~~qr~~~GGf~STQ-- 1198 (1436)
T KOG1366|consen 1125 SLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLAYLLLAQVD----YALPIVRWLVEQRNALGGFSSTQ-- 1198 (1436)
T ss_pred hhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHHHHHhcccC----cCchhHhhhhhhhcccCceeehH--
Confidence 0 0 00 00011245788999999877765432 22336999999999999999887
Q ss_pred ccccCceeeccCCccchHHHHHHHHHHHhhcCC
Q 029612 155 GVFMENCMLHYPIYRNIFPMWALAEYRSRLLLP 187 (190)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~ 187 (190)
.|+.+|+||++|.......
T Consensus 1199 --------------dTvvalqaLs~y~~~~~~~ 1217 (1436)
T KOG1366|consen 1199 --------------DTVVALQALSEYAALSHTE 1217 (1436)
T ss_pred --------------HHHHHHHHHHHhhhhcccc
Confidence 6899999999999987654
No 46
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.01 E-value=4.4e-09 Score=85.43 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=88.8
Q ss_pred hhhhhCCCCCchHHHHHHHHHHHHHHHhcccCCCcccccccc--h----hh---HHHHHHHHHHhc--CCC---------
Q 029612 3 LFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGIC--F----TY---AAWFAISGLVAA--KKT--------- 62 (190)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~--~----~~---~Ta~al~aL~~~--g~~--------- 62 (190)
.|-..+.........+++.+|++||++.|.++|+|+.-+... + ++ .+.-||..|... +..
T Consensus 52 fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~ 131 (290)
T TIGR02474 52 YLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDST 131 (290)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHH
Confidence 344455556678899999999999999999999996433211 1 11 245566666443 111
Q ss_pred -CCcHHHHHHHHHHHHhhccCCCccccCCCccCCC-ccCCCCC---C-CCc-HHHHHHHHHHHHHcCCCC-CCcHHHHHH
Q 029612 63 -YSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNK-KYIPLDG---N-RSN-LVQTAWAMMSLIHAGQME-RDPTPLHRA 134 (190)
Q Consensus 63 -~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~-~~~~~~~---~-~s~-~~~Ta~al~aL~~~~~~~-~~~~~i~~a 134 (190)
.....+++|+++||++.|-++|||-..+..+++. .+.|... . +|- ...|+-++.-|+...... .-..+|..|
T Consensus 132 ~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A 211 (290)
T TIGR02474 132 RTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAG 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 1236889999999999999999875554433332 1222100 1 122 223455555565554322 112488999
Q ss_pred HHHHHhcccCCC
Q 029612 135 AKLLINSQLEDG 146 (190)
Q Consensus 135 ~~~L~~~Q~~~G 146 (190)
++||.+..-++=
T Consensus 212 ~~W~~~~~i~g~ 223 (290)
T TIGR02474 212 VAWFDTSRIRGY 223 (290)
T ss_pred HHHHHHCCCCCc
Confidence 999999875543
No 47
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.88 E-value=1.5e-08 Score=82.30 Aligned_cols=97 Identities=22% Similarity=0.216 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHc--C
Q 029612 48 AAWFAISGLVAA---KKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA--G 122 (190)
Q Consensus 48 ~Ta~al~aL~~~---g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~--~ 122 (190)
.|.-.|.-|+.+ .......+++.||++||++.|+++|||....+... .|.. +-.-+-..+..+|..|... +
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~--~Y~~--~ITfND~am~~vl~lL~~i~~~ 120 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG--GYSD--AITYNDNAMVNVLTLLDDIANG 120 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC--Cccc--ccccCcHHHHHHHHHHHHHHhc
Confidence 355555555543 33445789999999999999999999987643211 1221 1111122234566666433 1
Q ss_pred CCC---C-------CcHHHHHHHHHHHhcccCCCCC
Q 029612 123 QME---R-------DPTPLHRAAKLLINSQLEDGDF 148 (190)
Q Consensus 123 ~~~---~-------~~~~i~~a~~~L~~~Q~~~Ggw 148 (190)
... . ...+++||++||++.|-+.|||
T Consensus 121 ~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 121 KDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 110 0 1248999999999999877654
No 48
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3e-08 Score=78.66 Aligned_cols=117 Identities=19% Similarity=0.264 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcccCCCcccccccc-hhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCcc
Q 029612 20 IAKATKFIEDIQKSDGSWYGSWGIC-FTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKY 98 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~~g~~-~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~ 98 (190)
-++-+.|++++|+++|+|.+.-|-. ..-.|-.|+..|+.....+ --.+.+.+.|+...|++||+|... .|
T Consensus 68 ~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~--~~d~d~v~~yi~gLq~edGsF~gD-------~w 138 (329)
T KOG0366|consen 68 REEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSIN--VLDRDKVASYIKGLQQEDGSFSGD-------IW 138 (329)
T ss_pred HHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccc--cccHHHHHHHHHhhcCcCCcccCC-------cc
Confidence 4667899999999999986544432 3334777777777665331 234566789999999999998543 12
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 99 IPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 99 ~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
.. -+...+.+|.+.++|+ +..+ ...+++||+|++++.|-||||+..+
T Consensus 139 GE---vDTRfs~~av~~L~lL--g~ld--~~nve~aVd~~~~CyN~DGGFG~~p 185 (329)
T KOG0366|consen 139 GE---VDTRFSYCAVACLALL--GKLD--TINVEKAVDFVLSCYNFDGGFGCRP 185 (329)
T ss_pred cc---cchhhhHHHHHHHHHH--hhHH--HhhHHHHHHHHHhhcccCCCcCCCC
Confidence 21 2333444454444443 3322 2268889999999999999998654
No 49
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.2e-08 Score=79.65 Aligned_cols=142 Identities=16% Similarity=0.243 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhcccCCCccccc-ccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCC
Q 029612 17 KNFIAKATKFIEDIQKSDGSWYGSW-GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPN 95 (190)
Q Consensus 17 ~~~i~~a~~~L~~~Q~~dGsw~~~~-g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~ 95 (190)
.+..+.+++||.++|+=||+|.... ..+..-.|..++.+|+.++.-... ..+++.+.||..+|-+.||+..+.
T Consensus 173 ~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~l-s~~E~l~~Wl~~RQ~ssgGl~GR~----- 246 (342)
T COG5029 173 KELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKL-SDVEKLIRWLAERQLSSGGLNGRS----- 246 (342)
T ss_pred hhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhccccc-chHHHHHHHHHHcccccCCcCCCc-----
Confidence 3567889999999999999985422 222333477788888877653211 238999999999999999886431
Q ss_pred CccCCCCCCCCcHHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHhcccC-CCCCCCCcccccccCceeeccCCccchHH
Q 029612 96 KKYIPLDGNRSNLVQTAWAMMSLIHAGQME-RDPTPLHRAAKLLINSQLE-DGDFPQQELTGVFMENCMLHYPIYRNIFP 173 (190)
Q Consensus 96 ~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~-~~~~~i~~a~~~L~~~Q~~-~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (190)
....|....-|++-.|.-.+... .+. .+-.+||+.+|++ .|||..++-. .+ ..|.+.|.
T Consensus 247 -------nKl~D~CYs~WvlsSl~il~~~~~in~---e~L~~yiL~c~q~~sGGfsdrp~~--~~-------D~yHt~~~ 307 (342)
T COG5029 247 -------NKLVDTCYSFWVLSSLAILGKLDFINT---EELTDYILDCQQETSGGFSDRPGE--EP-------DVYHTCFG 307 (342)
T ss_pred -------ccCccchhhhhhcchHHhcchhhhcCH---HHHHHHHHhhcccCCCCCCCCCcc--cc-------hHHHHHHH
Confidence 23344445555554444333221 122 2358999999987 8999887632 22 34578899
Q ss_pred HHHHHHHHHh
Q 029612 174 MWALAEYRSR 183 (190)
Q Consensus 174 l~aL~~~~~~ 183 (190)
|-||+-..-+
T Consensus 308 lagLsl~~~k 317 (342)
T COG5029 308 LAGLSLIEYK 317 (342)
T ss_pred HHHHHHhccC
Confidence 9998865443
No 50
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.3e-07 Score=76.24 Aligned_cols=140 Identities=20% Similarity=0.217 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcccCCCcccc-cccchhhHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHhhccCCCccccCCCccC
Q 029612 20 IAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKT----YSNCLAIRKATDFLLKIQCEDGGWGESYRSCP 94 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~-~g~~~~~~Ta~al~aL~~~g~~----~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~ 94 (190)
.++++.||.+.|+=||+|.-. .+.+.--.|.++|.+|+..|.- ..+...+.|.++||+.+|..+|||..+
T Consensus 176 ~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR----- 250 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGR----- 250 (347)
T ss_pred HHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCC-----
Confidence 468899999999999998532 2344445688999999887753 113344899999999999999998643
Q ss_pred CCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCc-HHHHHHHHHHHhcccCC-CCCCCCcccccccCceeeccCCccchH
Q 029612 95 NKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP-TPLHRAAKLLINSQLED-GDFPQQELTGVFMENCMLHYPIYRNIF 172 (190)
Q Consensus 95 ~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~-~~i~~a~~~L~~~Q~~~-Ggw~~~~~~g~~~~~~~~~~~~~~~~~ 172 (190)
++.+.|....-|+...|...+. ++ ..-++-.+||+++|..- |||.-.+ +.+| .+|.+.+
T Consensus 251 -------~NKp~DTCYaFWigasLklL~~---~~~~d~~~lr~fll~~Q~~~iGGFsK~P--~~~p-------D~~Hsyl 311 (347)
T KOG0367|consen 251 -------TNKPVDTCYAFWIGASLKLLDA---DWLIDKQVLRKFLLSTQDKLIGGFSKWP--EEDP-------DLLHSYL 311 (347)
T ss_pred -------CCCCchhHHHHHHHHHHHHccc---hHhhhHHHHHHHHHHhhhhhcCcccCCC--ccCc-------hHHHHHH
Confidence 1233444444444444444332 22 12334578999999876 9885332 1334 3345778
Q ss_pred HHHHHHHHHHh
Q 029612 173 PMWALAEYRSR 183 (190)
Q Consensus 173 ~l~aL~~~~~~ 183 (190)
.+-||+--.++
T Consensus 312 G~~alal~ee~ 322 (347)
T KOG0367|consen 312 GLAALALLEEK 322 (347)
T ss_pred HHHHHHHhcCC
Confidence 88888765543
No 51
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.9e-07 Score=75.63 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcccCCCcccccccc-hhhHHHHHHHHHHhcCCCCCcHHHH--HHHHHHHHhhccCCCccccCCCccC
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGIC-FTYAAWFAISGLVAAKKTYSNCLAI--RKATDFLLKIQCEDGGWGESYRSCP 94 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~~-~~~~Ta~al~aL~~~g~~~~~~~~i--~ra~~~Ll~~Q~~DGgw~~~~~~~~ 94 (190)
...++++++|...|.|.|+|.|..|.- ...-|-.+|.+|...|... --..| .+..+||.+..+|||||....
T Consensus 120 ~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~-A~~~InR~~l~~fL~slK~~dGgFrmh~---- 194 (423)
T KOG0365|consen 120 DVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSED-AYSSINREKLYQFLFSLKDPDGGFRMHV---- 194 (423)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHH-HHHHhhHHHHHHHHHHhcCCCCCeEeec----
Confidence 668999999999999999986654542 2234777899999888642 12333 457999999999999997642
Q ss_pred CCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Q 029612 95 NKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQEL 153 (190)
Q Consensus 95 ~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~ 153 (190)
.+..|+- .+|+.++....-....| +--+...+||.++|+-+|||+..+.
T Consensus 195 --------~GE~DvR-s~YcA~svasllni~~d-eL~eG~~~wi~~CQtyEGG~GG~P~ 243 (423)
T KOG0365|consen 195 --------EGEVDVR-SAYCALSVASLLNIPMD-ELFEGTLDWIASCQTYEGGFGGEPG 243 (423)
T ss_pred --------CCcchHH-HHHHHHHHHHHHCCCcH-HHHHHHHHHHHhcccccCCcCCCcc
Confidence 1233322 34444443333222213 2344457999999999999986653
No 52
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.8e-07 Score=74.36 Aligned_cols=121 Identities=26% Similarity=0.400 Sum_probs=75.3
Q ss_pred HHHHHHHhcccCCCccccc-cc-c---hhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCc
Q 029612 23 ATKFIEDIQKSDGSWYGSW-GI-C---FTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKK 97 (190)
Q Consensus 23 a~~~L~~~Q~~dGsw~~~~-g~-~---~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~ 97 (190)
-++++...|++||+|..-. |. + ++| -|.+|.-+. +.. ..-...+++.||.++|+-||||+..
T Consensus 130 il~~v~~~Q~~dGsF~~~~~GSe~DmRFvY-cA~aI~ymL--d~~--s~iD~ek~~~yI~~~q~YdgGfg~~-------- 196 (347)
T KOG0367|consen 130 ILRFVSACQRPDGSFVSINVGSESDMRFVY-CAVAICYML--DFW--SGIDKEKLIGYIRSSQRYDGGFGQH-------- 196 (347)
T ss_pred HHHHHHHhcCCCCceeecCCCCchhhHHHH-HHHHHHHHh--ccc--cccCHHHHHHHHHHhhccccccccC--------
Confidence 3567788999999985321 21 1 122 222333222 211 1234678999999999999999864
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHcCCC--C--CCcHHHHHHHHHHHhcccCCCCCCCCcccccccCcee
Q 029612 98 YIPLDGNRSNLVQTAWAMMSLIHAGQM--E--RDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 98 ~~~~~~~~s~~~~Ta~al~aL~~~~~~--~--~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~ 162 (190)
+++++..-.|-.||.+|...+.. . .+...++|-++||+.+|..+|||..++. .+.+.||
T Consensus 197 ----pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~N--Kp~DTCY 259 (347)
T KOG0367|consen 197 ----PGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTN--KPVDTCY 259 (347)
T ss_pred ----CCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCC--CCchhHH
Confidence 14556555666666555554443 1 1122589999999999999999976652 3444443
No 53
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.59 E-value=1.5e-07 Score=75.46 Aligned_cols=98 Identities=22% Similarity=0.233 Sum_probs=68.5
Q ss_pred HHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCCCCCC
Q 029612 71 KATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM-ERDPTPLHRAAKLLINSQLEDGDFP 149 (190)
Q Consensus 71 ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~-~~~~~~i~~a~~~L~~~Q~~~Ggw~ 149 (190)
++.+-+++.|++||||+.. . ...+++...|||++..|..+... ..|+..|.++++||+++|++||.|.
T Consensus 1 ~GYqr~L~y~~~DGsfs~f-~----------~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~ 69 (246)
T PF07678_consen 1 QGYQRQLSYRRSDGSFSAF-S----------SDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFE 69 (246)
T ss_dssp HHHHHHHTTB-TTSSBBSS-T----------TTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB-
T ss_pred CchHHHhcCCCCCCCeecc-c----------cCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccc
Confidence 3567788999999999863 1 14578999999999999988654 4567799999999999999999997
Q ss_pred CCcccccccCcee--eccCCccchHHHHHHHHHH
Q 029612 150 QQELTGVFMENCM--LHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 150 ~~~~~g~~~~~~~--~~~~~~~~~~~l~aL~~~~ 181 (190)
.... .+++... .....--|.|++.||.+..
T Consensus 70 e~~~--~~~~~~~g~~~~~~~lTA~VliAL~e~~ 101 (246)
T PF07678_consen 70 EDGP--VIHREMQGGVEDDIALTAYVLIALLEAG 101 (246)
T ss_dssp -SSS---SSGGGSGGGTHHHHHHHHHHHHHHHCH
T ss_pred cCCC--ccccccCCCCCCCeeehHHHHHHHHhhh
Confidence 6431 1222211 1112223788999998876
No 54
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.57 E-value=1e-07 Score=82.83 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcccCCCcccc-------c-------------ccchhhHHHHHHHHHHhcCCCCC--cHHHHHHHHHH
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGS-------W-------------GICFTYAAWFAISGLVAAKKTYS--NCLAIRKATDF 75 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~-------~-------------g~~~~~~Ta~al~aL~~~g~~~~--~~~~i~ra~~~ 75 (190)
+.++++++|+...|+..|+|... | ..+....|.-++.+|........ +...|+++++|
T Consensus 281 ~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~ 360 (517)
T COG1657 281 PNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEW 360 (517)
T ss_pred hhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhh
Confidence 56677999999999999987420 0 11223346666666665543211 14679999999
Q ss_pred HHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 76 LLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 76 Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
|++.|.+||.|...+.. -.+..|+.++-+|...+........+.+++.||..+|.++|||....
T Consensus 361 LL~~Q~~~GsW~g~w~v-------------~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~ 424 (517)
T COG1657 361 LLSDQEPDGSWYGRWGV-------------CYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAK 424 (517)
T ss_pred hhhhccccCceeeEEEE-------------EEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccc
Confidence 99999999999654322 22445677787877777654333489999999999999999997543
No 55
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.51 E-value=4.6e-07 Score=53.24 Aligned_cols=42 Identities=33% Similarity=0.441 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHc
Q 029612 68 AIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA 121 (190)
Q Consensus 68 ~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~ 121 (190)
.++++++||+++|++||||+... +..+++..|-+++.+|...
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~------------~~~~d~~~t~~~~~~L~ll 43 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRP------------GGESDTCYTYCALAALSLL 43 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSST------------TSSBBHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCC------------CCCCChHHHHHHHHHHHHc
Confidence 47899999999999999998751 4678999999999888654
No 56
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.18 E-value=5.2e-06 Score=48.70 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcccCCCccccccc-chhhHHHHHHHHHHhcC
Q 029612 20 IAKATKFIEDIQKSDGSWYGSWGI-CFTYAAWFAISGLVAAK 60 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~~g~-~~~~~Ta~al~aL~~~g 60 (190)
++++++||+++|++||+|.+.++. +.+..|.+++.+|..+|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 689999999999999999876544 46778999999987654
No 57
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=6.4e-05 Score=62.13 Aligned_cols=117 Identities=19% Similarity=0.276 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccC
Q 029612 20 IAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYI 99 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~ 99 (190)
.++-..||.+.-+.=++=...-+.+.+|+--+.+.+|...+.. .+++...+++++|..+|.|.|||+..
T Consensus 74 r~kH~~YL~~~Lr~Lp~~~~~LDASR~Wm~YWil~sl~lL~~~-~dd~v~~~~i~fL~~c~~PeGGfgGG---------- 142 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQLPSQYTCLDASRPWMCYWILNSLALLDEW-LDDDVKENAIDFLFTCQGPEGGFGGG---------- 142 (423)
T ss_pred HHHHHHHHHHHHHhCCCcccccccCcchhHHHHHHHHHHhcCc-CCHHHHHHHHHHHHhcCCCCCCCCCC----------
Confidence 5677777766444333311222345577788899999988864 36889999999999999999999863
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHhcccCCCCCC
Q 029612 100 PLDGNRSNLVQTAWAMMSLIHAGQMER-DPTPLHRAAKLLINSQLEDGDFP 149 (190)
Q Consensus 100 ~~~~~~s~~~~Ta~al~aL~~~~~~~~-~~~~i~~a~~~L~~~Q~~~Ggw~ 149 (190)
++..+....|--|+++|...+..+. +...-.+-.+||.+..++||||.
T Consensus 143 --PGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFr 191 (423)
T KOG0365|consen 143 --PGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFR 191 (423)
T ss_pred --CccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeE
Confidence 1455777888888999988765321 11123346899999999999995
No 58
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.06 E-value=1.8e-05 Score=64.54 Aligned_cols=101 Identities=24% Similarity=0.255 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcC---CCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHc--C
Q 029612 48 AAWFAISGLVAAK---KTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA--G 122 (190)
Q Consensus 48 ~Ta~al~aL~~~g---~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~--~ 122 (190)
.|.-.|..|+.+- .+....+++.|+++||++.|.|+|||.-.++... .|.. .-.-+-....-+|.-|... +
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~--~Y~~--~ITfNDdam~~vl~lL~~v~~~ 115 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRG--GYHD--HITFNDDAMVNVLELLRDVAEG 115 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--S--GGGG--SEE-GGGHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCC--CCCC--ceEEccHHHHHHHHHHHHHHhh
Confidence 3666666666542 2334689999999999999999999976543211 1211 1111122233444444333 2
Q ss_pred CCC---CC-------cHHHHHHHHHHHhcccC-CC---CCCCCc
Q 029612 123 QME---RD-------PTPLHRAAKLLINSQLE-DG---DFPQQE 152 (190)
Q Consensus 123 ~~~---~~-------~~~i~~a~~~L~~~Q~~-~G---gw~~~~ 152 (190)
..+ .+ ..+++||+++|+.+|-. +| +|...+
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQh 159 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQH 159 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhcc
Confidence 221 11 14899999999999972 33 686554
No 59
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.97 E-value=8.3e-06 Score=66.52 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=77.7
Q ss_pred hhhhCCCCCchHHHHHHHHHHHHHHHhcccCCCcccccccc------hhh---HHHHHHHHHHhc--CCC-C--------
Q 029612 4 FKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGIC------FTY---AAWFAISGLVAA--KKT-Y-------- 63 (190)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~------~~~---~Ta~al~aL~~~--g~~-~-------- 63 (190)
|-..+.....+.+.+++.+|++||++.|-++|+|+-.|... .++ .+.-+|..|..+ +.. .
T Consensus 48 La~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~ 127 (289)
T PF09492_consen 48 LARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLR 127 (289)
T ss_dssp HHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHH
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHH
Confidence 44455556788899999999999999999999997544211 111 244555555443 221 1
Q ss_pred -CcHHHHHHHHHHHHhhccC-C---CccccCCCcc-CCC----ccCCCCCCCC-cHHHHHHHHHHHHHcCCCCC-CcHHH
Q 029612 64 -SNCLAIRKATDFLLKIQCE-D---GGWGESYRSC-PNK----KYIPLDGNRS-NLVQTAWAMMSLIHAGQMER-DPTPL 131 (190)
Q Consensus 64 -~~~~~i~ra~~~Ll~~Q~~-D---Ggw~~~~~~~-~~~----~~~~~~~~~s-~~~~Ta~al~aL~~~~~~~~-~~~~i 131 (190)
...+++.|++++|++.|-. + -+|..-.... -.+ .|.+ +| ....|+-++.-|+....... -..+|
T Consensus 128 ~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~----pSls~~ES~~iv~~LM~~~~ps~~v~~aI 203 (289)
T PF09492_consen 128 ARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEP----PSLSGSESVGIVRFLMSLPNPSPEVLAAI 203 (289)
T ss_dssp HHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT------SSEECCCHHHHHHHHCTSSS--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCC----cccccccHHHHHHHHhcCCCCCHHHHHHH
Confidence 2368899999999999983 2 3675432111 000 1111 12 12245666666666554320 11488
Q ss_pred HHHHHHHHhcccCCCCCC
Q 029612 132 HRAAKLLINSQLEDGDFP 149 (190)
Q Consensus 132 ~~a~~~L~~~Q~~~Ggw~ 149 (190)
..|++||.++.-++..|.
T Consensus 204 ~~AvaWl~~~ki~g~~~~ 221 (289)
T PF09492_consen 204 EAAVAWLESVKIPGKRWE 221 (289)
T ss_dssp HHHHHHHCCTSEEEEEE-
T ss_pred HHHHHHHHhCcCCCceeE
Confidence 999999999887766553
No 60
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.80 E-value=8.4e-05 Score=68.42 Aligned_cols=83 Identities=13% Similarity=0.235 Sum_probs=57.5
Q ss_pred chhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCC
Q 029612 44 CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ 123 (190)
Q Consensus 44 ~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~ 123 (190)
.++|.||+|.+.=...|. ..+.--++++||++.|.+|||||.... . .....+..|.-+++||..-+.
T Consensus 95 ~S~YDTAWVAmVp~~~g~---~~p~FP~~~~wIl~nQ~~DGsWG~~~~------~----~~~D~ll~TLAcvlAL~~w~~ 161 (800)
T PLN02592 95 ISAYDTAWVALVEDINGS---GTPQFPSSLQWIANNQLSDGSWGDAYL------F----SAHDRLINTLACVVALKSWNL 161 (800)
T ss_pred CcHHHhHHHhhcccCCCC---CCCCCHHHHHHHHHccCCCCCCCCCCC------c----chHHHHHhHHHHHHHHHHhhc
Confidence 468999995332222122 124556899999999999999986310 0 112446789999999988655
Q ss_pred CCCCcHHHHHHHHHHHhcc
Q 029612 124 MERDPTPLHRAAKLLINSQ 142 (190)
Q Consensus 124 ~~~~~~~i~~a~~~L~~~Q 142 (190)
. +..|.||+.||.++-
T Consensus 162 ~---~~~i~rGl~fi~~nl 177 (800)
T PLN02592 162 H---PEKCEKGMSFFRENI 177 (800)
T ss_pred c---HHHHHHHHHHHHHHH
Confidence 3 348999999999755
No 61
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.68 E-value=0.00048 Score=53.71 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCc
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKK 97 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~ 97 (190)
+..+..-.|+++.|+++|.. ..+|+..+ .|-++..||...+.. -.+.....|-+. --.+|||.....
T Consensus 139 ~~~eE~k~~v~~~~re~~~g-~~YGv~~p-nt~~t~~aly~l~~k----~~~~~v~~Fe~~-c~~~Ggf~~~P~------ 205 (274)
T COG1689 139 EYLEEMKEKVIEFVREFGIG-DAYGVTHP-NTTMTYQALYTLGSK----GPKEEVRHFELC-CGDWGGFTEVPN------ 205 (274)
T ss_pred CchHHHHHHHHHHhhhhccc-cccccCCc-chHHHHHHHHhhccc----cchHHHHhHHhc-cccCCCcccCCC------
Confidence 34556677899999999884 45565433 355556666555432 122333344444 345677765321
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCccccc
Q 029612 98 YIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGV 156 (190)
Q Consensus 98 ~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~ 156 (190)
+-++-+..|-|++-+|...+... .+.+.++|+.+-||.||||......|.
T Consensus 206 -----syPPYiE~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGGFRRS~~~GI 255 (274)
T COG1689 206 -----SYPPYIEPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGGFRRSYELGI 255 (274)
T ss_pred -----CCCCccchHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCCeeeeEeccc
Confidence 23456778889998887665432 355679999999999999987665553
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.54 E-value=0.00093 Score=55.52 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=67.7
Q ss_pred HHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCC---C-C----CcHHHHHHHHHHHHhhccCCCccccCCCcc
Q 029612 22 KATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKK---T-Y----SNCLAIRKATDFLLKIQCEDGGWGESYRSC 93 (190)
Q Consensus 22 ~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~---~-~----~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~ 93 (190)
.-+.-|.+..+.+..+ + +..++..+|+|++||.-... . + .....|++.++.|++.|.+||.||.
T Consensus 165 ~~v~kL~~~~~~~~~~-~--~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN----- 236 (326)
T PF01122_consen 165 SVVAKLLKAENHNFYH-G--SQFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGN----- 236 (326)
T ss_dssp HHHHHHHHHHHSSTSS----STCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS-----
T ss_pred HHHHHHHHHHHhhccc-C--CCCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc-----
Confidence 3344455555566222 1 22345567888888865422 1 1 1256777778888999999999874
Q ss_pred CCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCC-cHHHHHHHHHHHhcccCCCCCCC
Q 029612 94 PNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD-PTPLHRAAKLLINSQLEDGDFPQ 150 (190)
Q Consensus 94 ~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~-~~~i~~a~~~L~~~Q~~~Ggw~~ 150 (190)
+..|+.|+.||...+..... ...+.+++++|++.. ++|.|..
T Consensus 237 --------------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 237 --------------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp --------------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-S
T ss_pred --------------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCCC
Confidence 44699999999998775432 237999999999954 6999864
No 63
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.41 E-value=0.00092 Score=55.54 Aligned_cols=69 Identities=25% Similarity=0.294 Sum_probs=53.0
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHhhccCCCccc
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSN-CLAIRKATDFLLKIQCEDGGWG 87 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~-~~~i~ra~~~Ll~~Q~~DGgw~ 87 (190)
.+..+..+|++.++.|++.|.+||.| | .+|.|+.|+.||...+..+.. .....+++++|++.. ++|.|.
T Consensus 209 ~~~~i~~~i~~~~~kIl~~q~~~G~~----G--NiySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~ 278 (326)
T PF01122_consen 209 LRRRIQQAIRSLVEKILSQQKPNGLF----G--NIYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQ 278 (326)
T ss_dssp GHHHHHHHHHHHHHHHHHTB-TTS-B----S--STTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcc----c--chhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCC
Confidence 45678899999999999999999998 3 367899999999999886532 477889999999854 688875
No 64
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=97.28 E-value=0.01 Score=54.05 Aligned_cols=131 Identities=11% Similarity=0.186 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHHHHHhcccC--CCccc--------c------cccchhh--HHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 029612 13 TKEVKNFIAKATKFIEDIQKSD--GSWYG--------S------WGICFTY--AAWFAISGLVAAKKTYSNCLAIRKATD 74 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~d--Gsw~~--------~------~g~~~~~--~Ta~al~aL~~~g~~~~~~~~i~ra~~ 74 (190)
.....+.+.+.+--|+..+.++ |+.-. . |+-.++| ..++++.||..+|.. +..++.++
T Consensus 246 ~~~~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~~----~~a~~~~~ 321 (648)
T TIGR01535 246 NGKGNSLYYVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGDV----DSALRSLD 321 (648)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCCH----HHHHHHHH
Confidence 3456788899999998888763 75421 1 2222333 589999999999964 68999999
Q ss_pred HHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHhccc--CCCCCCC
Q 029612 75 FLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMER--DPTPLHRAAKLLINSQL--EDGDFPQ 150 (190)
Q Consensus 75 ~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~--~~~~i~~a~~~L~~~Q~--~~Ggw~~ 150 (190)
||.+.|.+||.|--.+.......+. .--.+.||..++++......+. ....|+++++||++.-. .-|-|..
T Consensus 322 ~l~~~~~~~G~~lq~y~vdG~~~~~-----~iQlD~~g~~i~~~~~l~~~~~~~~~~~vk~aadfl~~~~p~p~~d~WEe 396 (648)
T TIGR01535 322 YLAKVQQDNGMFPQNSWVDGKPYWT-----GIQLDETAFPILLAYRLHRYDHAFYDKMLKPAADFIVKNGPKTGQERWEE 396 (648)
T ss_pred HHHHHhccCCCcCceeccCCCCCCC-----CccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCcccc
Confidence 9999999999984432222111111 1235567888776654432221 11369999999999753 2366765
Q ss_pred Cc
Q 029612 151 QE 152 (190)
Q Consensus 151 ~~ 152 (190)
+.
T Consensus 397 r~ 398 (648)
T TIGR01535 397 IG 398 (648)
T ss_pred cC
Confidence 44
No 65
>PLN02279 ent-kaur-16-ene synthase
Probab=97.18 E-value=0.00057 Score=63.11 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=56.3
Q ss_pred chhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCC
Q 029612 44 CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ 123 (190)
Q Consensus 44 ~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~ 123 (190)
.+.|+||+|-+.=...+. ..+.--++++||++.|.+||+||..... + .-....+.+|.-+++||..-+.
T Consensus 53 ~s~YDTAWvamv~~~~~~---~~p~Fp~~~~wil~nQ~~dGsWg~~~~~-------~-~~~~D~ll~TlAcvlAL~~w~~ 121 (784)
T PLN02279 53 VSSYDTAWVAMVPSPNSQ---QAPLFPECVKWLLENQLEDGSWGLPHDH-------P-LLVKDALSSTLASILALKKWGV 121 (784)
T ss_pred CchhhhHHHHhcccCCCC---CCCCChHHHHHHHhcCCCCCCCCCCCCC-------c-chhHHhhHHHHHHHHHHHHHhc
Confidence 468999998553332121 2345568999999999999999863100 0 0012346789999999988765
Q ss_pred CCCCcHHHHHHHHHHHhcc
Q 029612 124 MERDPTPLHRAAKLLINSQ 142 (190)
Q Consensus 124 ~~~~~~~i~~a~~~L~~~Q 142 (190)
.. ..+++++.|+.+.-
T Consensus 122 ~~---~~~~~gl~fi~~n~ 137 (784)
T PLN02279 122 GE---EQINKGLQFIELNS 137 (784)
T ss_pred Cc---ccchhhHHHHHHHH
Confidence 42 25788888887543
No 66
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.91 E-value=0.0034 Score=49.07 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHH
Q 029612 44 CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH 120 (190)
Q Consensus 44 ~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~ 120 (190)
.++..|-+++..|...+... .+.+-++|+.+.||+||||..++. .+-|++..|-+|+..|..
T Consensus 209 PYiE~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGGFRRS~~-----------~GISt~e~tYrAl~~L~~ 270 (274)
T COG1689 209 PYIEPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGGFRRSYE-----------LGISTFENTYRALASLAS 270 (274)
T ss_pred CccchHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCCeeeeEe-----------ccccchHHHHHHHHHHHH
Confidence 34556889999998887653 577788999999999999976421 457899999888877754
No 67
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=96.90 E-value=0.019 Score=52.05 Aligned_cols=121 Identities=16% Similarity=0.259 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhcccC-CCccc----------ccccchhh--HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc
Q 029612 15 EVKNFIAKATKFIEDIQKSD-GSWYG----------SWGICFTY--AAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC 81 (190)
Q Consensus 15 ~~~~~i~~a~~~L~~~Q~~d-Gsw~~----------~~g~~~~~--~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 81 (190)
.+.+.+++.+--|+..+.++ |++-. .|+-.++| ++++++.||..+|.. +..++.++||.+.|.
T Consensus 253 ~~~~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~ 328 (616)
T TIGR01577 253 KIYSLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYH----DRVDRFFRWAMQTQS 328 (616)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhC
Confidence 33467788777776666655 76321 12222333 599999999999964 689999999999999
Q ss_pred CCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCC-------cHHHHHHHHHHHhcc
Q 029612 82 EDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD-------PTPLHRAAKLLINSQ 142 (190)
Q Consensus 82 ~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~-------~~~i~~a~~~L~~~Q 142 (190)
+||+|-..+.. .+ ...+.. .....+.++..|.++........+ -..++++++|+.+..
T Consensus 329 ~~G~~~~~~~~-dG-~~~~~~-~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~ 393 (616)
T TIGR01577 329 RDGSWQQRYYL-NG-RLAPLQ-WGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFI 393 (616)
T ss_pred cCCCcceEEec-CC-CCCCCC-CCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998432211 10 000000 012233467777766433111111 136899999999965
No 68
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.59 E-value=0.061 Score=44.92 Aligned_cols=129 Identities=22% Similarity=0.232 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhc----CCC----CCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHH
Q 029612 48 AAWFAISGLVAA----KKT----YSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLI 119 (190)
Q Consensus 48 ~Ta~al~aL~~~----g~~----~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~ 119 (190)
..++++.+|... ... ....+..++.++.|.+.|.+||.|...... |-+....+.+.||.+..+|.
T Consensus 188 G~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~-------~~~~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 188 GNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDD-------PDPGNYRETSATAMFAYGLL 260 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTT-------TTTTS-BEHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCC-------CCCCCcccHHHHHHHHHHHH
Confidence 356677776643 111 112455667788889999999999754321 10124567778887777775
Q ss_pred H---cCCCCCC--cHHHHHHHHHHHhc-ccCCCC--CCCCccccc---ccCceeeccCCccchHHHHHHHHHHHh
Q 029612 120 H---AGQMERD--PTPLHRAAKLLINS-QLEDGD--FPQQELTGV---FMENCMLHYPIYRNIFPMWALAEYRSR 183 (190)
Q Consensus 120 ~---~~~~~~~--~~~i~~a~~~L~~~-Q~~~Gg--w~~~~~~g~---~~~~~~~~~~~~~~~~~l~aL~~~~~~ 183 (190)
. .+..+.. ...+.|+++.|++. -++||. +........ |...-.-...+|...+.|.||.|+.+.
T Consensus 261 ~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~~r~ 335 (336)
T PF07470_consen 261 RGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEYERL 335 (336)
T ss_dssp HHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHHHCG
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 4 3433111 14888999999999 678887 543321111 011112233467899999999998764
No 69
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.22 E-value=0.01 Score=54.95 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcccCCCccccccc---chhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGI---CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLK 78 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~---~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~ 78 (190)
+..-+.++||+++|.+||||....+. ...-.|..+|.||...+.. ...|+|++.||.+
T Consensus 115 p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fi~~ 175 (800)
T PLN02592 115 PQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH---PEKCEKGMSFFRE 175 (800)
T ss_pred CCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc---HHHHHHHHHHHHH
Confidence 45568999999999999999543111 1234588888999877654 4789999999964
No 70
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.95 E-value=0.045 Score=45.68 Aligned_cols=109 Identities=21% Similarity=0.174 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCcccccc------cchhhHHHHHHHHHHh---cCCC--CCcHHHHHHHHHHHHhh-c
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSWG------ICFTYAAWFAISGLVA---AKKT--YSNCLAIRKATDFLLKI-Q 80 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g------~~~~~~Ta~al~aL~~---~g~~--~~~~~~i~ra~~~Ll~~-Q 80 (190)
++++.+.+++.++.|...|.+||.|.-... ...+..||++..+|.. .|.. ....+.+.|+++.|++. -
T Consensus 210 ~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~ 289 (336)
T PF07470_consen 210 RDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAI 289 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCcc
Confidence 466778888889999999999999953211 1234467777777743 3432 23468899999999999 8
Q ss_pred cCCCc--cccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHc
Q 029612 81 CEDGG--WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA 121 (190)
Q Consensus 81 ~~DGg--w~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~ 121 (190)
++||. +........-+.|.+.+....++...++.|+|+.+.
T Consensus 290 ~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~ 332 (336)
T PF07470_consen 290 DPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEY 332 (336)
T ss_dssp -TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 88887 432211111001111112234567889999998875
No 71
>PLN02279 ent-kaur-16-ene synthase
Probab=95.41 E-value=0.021 Score=53.04 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcccCCCcccccc-----cchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWG-----ICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLL 77 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g-----~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll 77 (190)
+..-++++||+++|.+||||...-. ....-.|..+|+||...+.. +..++|++.||.
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~---~~~~~~gl~fi~ 134 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG---EEQINKGLQFIE 134 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC---cccchhhHHHHH
Confidence 5566799999999999999953211 11234688899999887654 245677777775
No 72
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.049 Score=53.63 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCC-C----CcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCC
Q 029612 49 AWFAISGLVAAKKT-Y----SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ 123 (190)
Q Consensus 49 Ta~al~aL~~~g~~-~----~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~ 123 (190)
+-+|+.-|-..+.- + +....++.+..-.+..+++||++..... ....+....|||+|..+..+..
T Consensus 948 ni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~----------~~~~~stWLtafvlr~f~~a~~ 1017 (1436)
T KOG1366|consen 948 NIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGS----------SDRSGSTWLTAFVLRVFSQAKE 1017 (1436)
T ss_pred hhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcC----------CCCcccHHHHHHHHHHhhhccC
Confidence 44555555544332 1 0123334445555556789999876421 1245678899999999988865
Q ss_pred C-CCCcHHHHHHHHHHHhcccCCCCCCC
Q 029612 124 M-ERDPTPLHRAAKLLINSQLEDGDFPQ 150 (190)
Q Consensus 124 ~-~~~~~~i~~a~~~L~~~Q~~~Ggw~~ 150 (190)
. ..|+..+.++++||..+|.++|.|..
T Consensus 1018 ~i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 1018 YIFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred ceEecHHHHHHHHHHHHHhhccCceEec
Confidence 3 34667899999999999999999864
No 73
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=94.78 E-value=0.51 Score=39.78 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhc--ccCCCccccc---c-----cchhhHHHHHHHHHHhcC---CCCCcHHHHHHHHHHHHhhc-cCC
Q 029612 18 NFIAKATKFIEDIQ--KSDGSWYGSW---G-----ICFTYAAWFAISGLVAAK---KTYSNCLAIRKATDFLLKIQ-CED 83 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q--~~dGsw~~~~---g-----~~~~~~Ta~al~aL~~~g---~~~~~~~~i~ra~~~Ll~~Q-~~D 83 (190)
..++.++.|..... .+.|+|.... | .-.++.+++.|.+|+.+. ..+...+..+++++||.+.- .++
T Consensus 14 ~~~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~ 93 (384)
T cd00249 14 WLLEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPD 93 (384)
T ss_pred HHHHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCC
Confidence 45678888887743 3467764311 1 124667889998888653 22234567889999998754 446
Q ss_pred -CccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHhccc-CCCCCC
Q 029612 84 -GGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQL-EDGDFP 149 (190)
Q Consensus 84 -Ggw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~---~~i~~a~~~L~~~Q~-~~Ggw~ 149 (190)
|||........ .+. ....+...-++++.||........++ ..+.+.+++|.+... ++|++.
T Consensus 94 ~Gg~~~~~~~~g----~~~-~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~ 159 (384)
T cd00249 94 HGGWYFALDQDG----RPV-DATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAF 159 (384)
T ss_pred CCCEEEEEcCCC----CCc-ccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 99865432110 010 11234667789999988775543333 355667888888774 456553
No 74
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=93.05 E-value=3.4 Score=34.77 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHH---cCCCCC-CcHHHHHHHHHHHhc
Q 029612 66 CLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH---AGQMER-DPTPLHRAAKLLINS 141 (190)
Q Consensus 66 ~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~---~~~~~~-~~~~i~~a~~~L~~~ 141 (190)
...++..++-|++.|.++|=|-..... +.+++....+.||-.+.||+. .|.... ....++||.+=|+++
T Consensus 231 ~~~l~d~v~al~r~Qde~GlW~tiLDd-------~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~ 303 (357)
T COG4225 231 LNVLRDLVDALIRYQDESGLWHTILDD-------GRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGH 303 (357)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhcc-------CCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhh
Confidence 456667788899999999999653221 001233345556666666665 454321 123899999999999
Q ss_pred ccCCCC
Q 029612 142 QLEDGD 147 (190)
Q Consensus 142 Q~~~Gg 147 (190)
-.++|-
T Consensus 304 i~~~g~ 309 (357)
T COG4225 304 IDEEGE 309 (357)
T ss_pred cccccc
Confidence 987763
No 75
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=92.57 E-value=0.74 Score=46.27 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=53.8
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCcccccc---cchhhHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHH-hhccC
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWG---ICFTYAAWFAISGLVAAKKT--YSNCLAIRKATDFLL-KIQCE 82 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g---~~~~~~Ta~al~aL~~~g~~--~~~~~~i~ra~~~Ll-~~Q~~ 82 (190)
.+...+..++.++.-|.+.|..+|+| +-|+ ....+.|++++..|.++... ...++.+.++.++++ ..|++
T Consensus 1193 ~~~~~~~~l~~a~~rL~~~Q~~~G~F-~~W~~~~~~d~~ltaYa~~Fl~~A~e~g~~vp~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1193 ADNDLRARLQDAIGRLLSLQGSNGAF-GLWGGNGSGDPWLTAYAVDFLLRAREQGYSVPSDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred cchhHHHHHHHHHHHHHhhhhcCCce-eecCCCCCcchhhhHHHHHHHhhhhhcCcCCCHHHHHHHHHHHHHHHhCc
Confidence 45667789999999999999999996 5554 35678999999999887432 135789999988765 45554
No 76
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=90.97 E-value=1.5 Score=36.87 Aligned_cols=81 Identities=21% Similarity=0.136 Sum_probs=56.3
Q ss_pred hhhhCCCC-CchHHHHHHHHHHHHHHHhcccCCCcccc--ccc--c--hhhHHHHHHHHHHh---cCC-CCCcHHHHHHH
Q 029612 4 FKKLYPKH-RTKEVKNFIAKATKFIEDIQKSDGSWYGS--WGI--C--FTYAAWFAISGLVA---AKK-TYSNCLAIRKA 72 (190)
Q Consensus 4 ~~~~~~~~-~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~--~g~--~--~~~~Ta~al~aL~~---~g~-~~~~~~~i~ra 72 (190)
|+.++-.| .+.+..++++.-+.=|++.|.++|-|.-- -|. + .+..||...-+|+. .|. .++..+.++||
T Consensus 217 le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA 296 (357)
T COG4225 217 LELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKA 296 (357)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHH
Confidence 34444334 57788899999999999999999998521 111 1 12356666666665 564 33456899999
Q ss_pred HHHHHhhccCCC
Q 029612 73 TDFLLKIQCEDG 84 (190)
Q Consensus 73 ~~~Ll~~Q~~DG 84 (190)
++=|+++-.++|
T Consensus 297 ~~aLl~~i~~~g 308 (357)
T COG4225 297 LDALLGHIDEEG 308 (357)
T ss_pred HHHHHhhccccc
Confidence 999999988766
No 77
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=90.82 E-value=0.76 Score=46.20 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHhcc
Q 029612 65 NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQME--RDPTPLHRAAKLLINSQ 142 (190)
Q Consensus 65 ~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~--~~~~~i~~a~~~L~~~Q 142 (190)
....++.++.-|++.|..||+|+.. .+ .+.+++..|+|+...|+++...+ .+...+.++.+++++..
T Consensus 1197 ~~~~l~~a~~rL~~~Q~~~G~F~~W---------~~--~~~~d~~ltaYa~~Fl~~A~e~g~~vp~~~~~~~~~~~~~~l 1265 (1621)
T COG2373 1197 LRARLQDAIGRLLSLQGSNGAFGLW---------GG--NGSGDPWLTAYAVDFLLRAREQGYSVPSDALNQMLERLLEYL 1265 (1621)
T ss_pred HHHHHHHHHHHHHhhhhcCCceeec---------CC--CCCcchhhhHHHHHHHhhhhhcCcCCCHHHHHHHHHHHHHHH
Confidence 3678899999999999999999863 22 36789999999999999884332 23458888877666654
Q ss_pred cCCC
Q 029612 143 LEDG 146 (190)
Q Consensus 143 ~~~G 146 (190)
...|
T Consensus 1266 ~n~~ 1269 (1621)
T COG2373 1266 QNPG 1269 (1621)
T ss_pred hCcC
Confidence 4444
No 78
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=90.13 E-value=0.99 Score=38.04 Aligned_cols=112 Identities=17% Similarity=0.118 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhc--cCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHhc
Q 029612 67 LAIRKATDFLLKIQ--CEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINS 141 (190)
Q Consensus 67 ~~i~ra~~~Ll~~Q--~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~---~~i~~a~~~L~~~ 141 (190)
..++.++.|..... .++|||....... + .+. .....+..+++++.++..+.....++ ...+++++||.+.
T Consensus 14 ~~~~~~~~fw~~~~~d~~~gg~~~~l~~~-g---~~~-~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~ 88 (384)
T cd00249 14 WLLEDLLPFWLEAGLDREAGGFFECLDRD-G---QPF-DTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRH 88 (384)
T ss_pred HHHHHHHHHHHhcCCCCCCCCeEEEECCC-C---CCC-CCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence 34567888887643 3468886542211 1 111 12445677899999988764432222 3566889999997
Q ss_pred cc-CC-CCCCCCcc-cccccCceeeccCCccchHHHHHHHHHHHhhcC
Q 029612 142 QL-ED-GDFPQQEL-TGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 186 (190)
Q Consensus 142 Q~-~~-Ggw~~~~~-~g~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~ 186 (190)
.. ++ |+|..... .|. ...-...+|.+.|++.||+++-+.+.-
T Consensus 89 ~~d~~~Gg~~~~~~~~g~---~~~~~~~l~~~a~~l~ala~~~~at~d 133 (384)
T cd00249 89 GRDPDHGGWYFALDQDGR---PVDATKDLYSHAFALLAAAQAAKVGGD 133 (384)
T ss_pred CcCCCCCCEEEEEcCCCC---CcccccchHHHHHHHHHHHHHHHhcCC
Confidence 65 35 88854321 221 111233578999999999998776543
No 79
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=89.98 E-value=0.82 Score=41.59 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc-cccc-ccCceeeccCCccchHHHHHHHHHHHh
Q 029612 110 QTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE-LTGV-FMENCMLHYPIYRNIFPMWALAEYRSR 183 (190)
Q Consensus 110 ~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~-~~g~-~~~~~~~~~~~~~~~~~l~aL~~~~~~ 183 (190)
.++++++||..+|.. ...++.++||.+.|.++|.|.+.+ +.|. .|-...+.... +..+|+|+.+|.+.
T Consensus 299 D~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~~~~~~~Q~D~--~g~~l~al~~y~~~ 368 (616)
T TIGR01577 299 DASYIATALDRAGYH----DRVDRFFRWAMQTQSRDGSWQQRYYLNGRLAPLQWGLQIDE--TGSILWAMDQHYRL 368 (616)
T ss_pred cHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcCCCcceEEecCCCCCCCCCCccccc--hhHHHHHHHHHHHH
Confidence 467888899888864 378889999999999999997654 2332 21011122122 34578888776543
No 80
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=86.11 E-value=1.2 Score=38.02 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcc-cCCCCCCCCcccccccCceeeccCCccchHHHHHHHHHHHhhcC
Q 029612 129 TPLHRAAKLLINSQ-LEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 186 (190)
Q Consensus 129 ~~i~~a~~~L~~~Q-~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~ 186 (190)
..+.-+++|+.+.. .++|+|..-...+ -+..=-.+..|.|.|+|.|++++....++
T Consensus 78 ~~v~hG~~y~~~~~R~~~gg~~~~~~~d--g~~~Dat~d~Y~haFallA~A~~a~a~~~ 134 (388)
T COG2942 78 DAVAHGIAYLARVGRDPEGGWYFALDND--GGPVDATKDLYGHAFALLAAAHAATAGPP 134 (388)
T ss_pred HHHHhHHHHHHhcCcCCCCCeEEEecCC--CCcccccHhHHHHHHHHHHHHHHHhcCCh
Confidence 47888999999766 4688885322111 11222355788999999999997765544
No 81
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.27 E-value=20 Score=30.57 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHH--HHHHHcCC
Q 029612 46 TYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAM--MSLIHAGQ 123 (190)
Q Consensus 46 ~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al--~aL~~~~~ 123 (190)
.+..++|-.+|...|... +...|+..++-+.+....||=++.. .. ..-|= ..+||+ +.|.-...
T Consensus 155 ~lF~v~v~~~L~~~G~~~-d~~~i~~~l~~~e~~Y~GdGWY~DG-~~-----------~~~DY-Yns~aih~y~l~~~~~ 220 (361)
T PF10022_consen 155 LLFRVMVEAFLKKVGEEY-DEERIDYDLERIEEWYLGDGWYSDG-PE-----------FQFDY-YNSWAIHPYLLLYARL 220 (361)
T ss_pred HHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHHhccCCccccC-Cc-----------cCCcc-hHHHHHHHHHHHHHHH
Confidence 345788889999998875 6789999999998877666543321 11 11111 225555 33332221
Q ss_pred C-CCCc----HHHHHHHHHHHhccc---CCCCCC
Q 029612 124 M-ERDP----TPLHRAAKLLINSQL---EDGDFP 149 (190)
Q Consensus 124 ~-~~~~----~~i~~a~~~L~~~Q~---~~Ggw~ 149 (190)
. +.++ ...+|+.+|+.+... +||...
T Consensus 221 ~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~ 254 (361)
T PF10022_consen 221 MGDEDPERAARYRQRAQRFAEDYERMFSPDGAAP 254 (361)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence 1 1121 356677788777553 788754
No 82
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=83.87 E-value=2.7 Score=38.55 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 110 QTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 110 ~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
..+++++||..+|... ..++.++||.+.|.++|.|.+.+
T Consensus 299 D~a~~a~AL~~~G~~~----~a~~~~~~l~~~~~~~G~~lq~y 337 (648)
T TIGR01535 299 DLYQVANAFLAAGDVD----SALRSLDYLAKVQQDNGMFPQNS 337 (648)
T ss_pred hHHHHHHHHHHCCCHH----HHHHHHHHHHHHhccCCCcCcee
Confidence 4678888888888642 78889999999999999998775
No 83
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=81.81 E-value=5.7 Score=33.13 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHHHhcc--cCCCccccc-------ccchhhHHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHhh-
Q 029612 13 TKEVKNFIAKATKFIEDIQK--SDGSWYGSW-------GICFTYAAWFAISGLVAA---KKTYSNCLAIRKATDFLLKI- 79 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~--~dGsw~~~~-------g~~~~~~Ta~al~aL~~~---g~~~~~~~~i~ra~~~Ll~~- 79 (190)
.++..+..+++++||.+.-. .+|+|.... .....|..+|+|.+|+.+ |.. ...+.+++++++|.+.
T Consensus 38 ~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~tg~~-~~~~~A~~~~~~l~~~~ 116 (346)
T PF07221_consen 38 RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARATGDP-EALELAEQTLEFLERRF 116 (346)
T ss_dssp SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHCTT-T-THHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHh
Confidence 56688899999999998764 557775311 223577899999999884 332 3467778899999876
Q ss_pred ccCC-Cccc
Q 029612 80 QCED-GGWG 87 (190)
Q Consensus 80 Q~~D-Ggw~ 87 (190)
.+++ |++.
T Consensus 117 ~d~~~g~~~ 125 (346)
T PF07221_consen 117 WDPEGGGYR 125 (346)
T ss_dssp EETTTTEE-
T ss_pred cccccCcce
Confidence 4665 4443
No 84
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=76.59 E-value=1.8 Score=37.12 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhccCCCccccC
Q 029612 67 LAIRKATDFLLKIQCEDGGWGES 89 (190)
Q Consensus 67 ~~i~ra~~~Ll~~Q~~DGgw~~~ 89 (190)
.+--.|.+||+..|++.|||...
T Consensus 380 aaFyaAadWlV~NQd~kGGW~~p 402 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDDKGGWSVP 402 (594)
T ss_pred HHHHHHHHHHhhCCCCCCCCcch
Confidence 44457899999999999999654
No 85
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=75.88 E-value=15 Score=32.69 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHHHHhhccCCCccccCCCcc---CCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCc---HHHHHHHHH
Q 029612 64 SNCLAIRKATDFLLKIQCEDGGWGESYRSC---PNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKL 137 (190)
Q Consensus 64 ~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~---~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~---~~i~~a~~~ 137 (190)
.-.+.+++.+++|+++|.+||-.+...... ....|.+ ...+.......+.||........+. ..+.|..+|
T Consensus 80 ~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~---~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~ 156 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAP---DMHELYCLGKLLEGLIDYYEATGNERALDVATKLADW 156 (520)
T ss_pred HHHHHHHHHHHHHHHhccCCceecccccccccccccCCCC---CccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 356788899999999999999655432221 1122332 1222445566777887654322222 256677888
Q ss_pred H
Q 029612 138 L 138 (190)
Q Consensus 138 L 138 (190)
+
T Consensus 157 ~ 157 (520)
T PF07944_consen 157 V 157 (520)
T ss_pred H
Confidence 8
No 86
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=73.78 E-value=5.9 Score=35.33 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=43.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhcccCCCccc-----------cccc--chhhHHHHHHHHHHh----cCCCCCcHHHHHHH
Q 029612 10 KHRTKEVKNFIAKATKFIEDIQKSDGSWYG-----------SWGI--CFTYAAWFAISGLVA----AKKTYSNCLAIRKA 72 (190)
Q Consensus 10 ~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~-----------~~g~--~~~~~Ta~al~aL~~----~g~~~~~~~~i~ra 72 (190)
.+.+++..+.+++.|++|.+.|++||-... .|.. ...|...-.+.+|.. .|.. ..-+.+.|.
T Consensus 75 ~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~-~~L~v~~k~ 153 (520)
T PF07944_consen 75 YTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNE-RALDVATKL 153 (520)
T ss_pred HCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHHCcH-HHHHHHHHH
Confidence 445788999999999999999999995321 1222 113434445555543 2443 245677889
Q ss_pred HHHH
Q 029612 73 TDFL 76 (190)
Q Consensus 73 ~~~L 76 (190)
++|+
T Consensus 154 ad~~ 157 (520)
T PF07944_consen 154 ADWV 157 (520)
T ss_pred HHHH
Confidence 9999
No 87
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=66.18 E-value=8 Score=32.25 Aligned_cols=72 Identities=21% Similarity=0.174 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHhccc--CCCCCCCCcccccccCceeeccCCccchHHHHHHHHHH
Q 029612 107 NLVQTAWAMMSLIHAGQMERD--PTPLHRAAKLLINSQL--EDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 107 ~~~~Ta~al~aL~~~~~~~~~--~~~i~~a~~~L~~~Q~--~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~ 181 (190)
.+..++..+..+..+...+.+ ...++++++||.+... .+|+|......|. ..--....|.+.|+|.||++++
T Consensus 19 ~~~~q~R~~~~fa~a~~~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~---~~~~~~~~Y~~af~l~ala~~~ 94 (346)
T PF07221_consen 19 RLWVQARQLYTFARAYRLGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG---PLDPQKDLYDQAFALLALAEAR 94 (346)
T ss_dssp EHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE---EEE--EEHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC---CCccccchHHHHHHHHHHHHHH
Confidence 455667777665544222211 1377889999999885 5688864433332 1233456789999999999953
No 88
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.61 E-value=94 Score=26.53 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCC---CCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCC
Q 029612 48 AAWFAISGLVAAKK---TYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM 124 (190)
Q Consensus 48 ~Ta~al~aL~~~g~---~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~ 124 (190)
..|+...+|..+.+ ++-+...-++.++||.+.....-.. ..-..-.+.+..+|...|..
T Consensus 110 Eaa~la~aL~~a~~~lW~~L~~~~k~~l~~wL~~~~~~~~~~------------------nNW~lF~v~v~~~L~~~G~~ 171 (361)
T PF10022_consen 110 EAASLALALLRAPEWLWDPLDEEEKENLVDWLKQIRGIKPPD------------------NNWLLFRVMVEAFLKKVGEE 171 (361)
T ss_pred HHHHHHHHHHHCHHHHHhhCCHHHHHHHHHHHHhcCcCCCcc------------------chhHHHHHHHHHHHHHcCCC
Confidence 35666677777653 2235677788999997653211110 01122346777788888764
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 125 ERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 125 ~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
- |...++.+++-+.+-...||.+.+..
T Consensus 172 ~-d~~~i~~~l~~~e~~Y~GdGWY~DG~ 198 (361)
T PF10022_consen 172 Y-DEERIDYDLERIEEWYLGDGWYSDGP 198 (361)
T ss_pred C-cHHHHHHHHHHHHHHhccCCccccCC
Confidence 3 45689999999998777777766544
No 89
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=61.47 E-value=1e+02 Score=29.14 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=59.7
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCC
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYR 91 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~ 91 (190)
..+...+.+.+.++.+.+...++....--.| .....+++..+..........+.+.+++++|++.+..+..|.....
T Consensus 558 ~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G---~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~ 634 (825)
T cd04792 558 KDDRLLNLAKEILDLIDELIEKDEKLDFISG---AAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIGPAE 634 (825)
T ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCEeee---cHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhccCCccccc
Confidence 3455666677777777655433332100011 1123444554544433333467788899999876555443321100
Q ss_pred ccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC-CCCCC
Q 029612 92 SCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLE-DGDFP 149 (190)
Q Consensus 92 ~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~-~Ggw~ 149 (190)
.....+ -..-..-.+++|..+........-...+.+++++..+...+ .+.|+
T Consensus 635 ---~~~~~G---~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~ 687 (825)
T cd04792 635 ---QPNLTG---FAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWP 687 (825)
T ss_pred ---cccccc---ccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCC
Confidence 000001 01113334555555554422110012566677776665443 35675
No 90
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=60.21 E-value=52 Score=28.32 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHH-hhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCc
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLL-KIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP 128 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll-~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~ 128 (190)
+|++.++. |....-.+.+.-++.|+. ...+++|||......... + -...-+...-++||+|+..+-....+.
T Consensus 63 ~fA~A~~~--g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~----~-~Dat~d~Y~haFallA~A~~a~a~~~~ 135 (388)
T COG2942 63 CFAVAGLL--GWRGPWLDAVAHGIAYLARVGRDPEGGWYFALDNDGG----P-VDATKDLYGHAFALLAAAHAATAGPPR 135 (388)
T ss_pred HHHHHHHh--cCCccHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCC----c-ccccHhHHHHHHHHHHHHHHHhcCChh
Confidence 34444333 333224688889999997 567789999764322111 1 012345777899999998764432111
Q ss_pred --HHHHHHHHHHHhcc----cCCCCCCCC
Q 029612 129 --TPLHRAAKLLINSQ----LEDGDFPQQ 151 (190)
Q Consensus 129 --~~i~~a~~~L~~~Q----~~~Ggw~~~ 151 (190)
...+.+.+.|.+.- ++-+++..+
T Consensus 136 a~~~~~~a~~~l~~~~~~~~~pl~~~e~~ 164 (388)
T COG2942 136 ADELLDEALDVLERRFWREEHPLGGFEED 164 (388)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCccccccc
Confidence 24445555544433 344666543
No 91
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=53.77 E-value=71 Score=24.65 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCCCCcH---HHHHHHHHHHhcccCCCCCCCCcccccccCceeecc-------CCccchHHHHHHHHHH
Q 029612 112 AWAMMSLIHAGQMERDPT---PLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHY-------PIYRNIFPMWALAEYR 181 (190)
Q Consensus 112 a~al~aL~~~~~~~~~~~---~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~-------~~~~~~~~l~aL~~~~ 181 (190)
+.++-.|.++.....|++ +.+++++.+.- ...+||....... ...++-+| -+..++++|.+|-.|.
T Consensus 33 G~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~-~~~~GG~~~~~~~---~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~ 108 (189)
T PF06662_consen 33 GQAISVLARAYQLTGDEKYLDAAKKALNSFKV-PVEEGGVLATFKN---KYPWYEEYPTTPPSYVLNGFIYSLIGLYDYY 108 (189)
T ss_pred HHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcC-hHhhCCeeEEecC---CcEeEeecCCCCCCEEeehHHHHHHHHHHHH
Confidence 566667777654433443 44444444433 1245664322111 01222222 3335889999999987
Q ss_pred Hhh
Q 029612 182 SRL 184 (190)
Q Consensus 182 ~~~ 184 (190)
...
T Consensus 109 ~~~ 111 (189)
T PF06662_consen 109 RLT 111 (189)
T ss_pred Hhc
Confidence 543
No 92
>PLN02567 alpha,alpha-trehalase
Probab=51.77 E-value=1.5e+02 Score=26.96 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=45.1
Q ss_pred cccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHH
Q 029612 41 WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH 120 (190)
Q Consensus 41 ~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~ 120 (190)
+-..+-|.+.|++.+|...|.. +.++..++=++..+...|--....+++ | -+.|-+..-+.++..+.+
T Consensus 150 FrE~yyWDSy~i~~GLl~s~~~----~~A~~mi~Nf~~~i~~~GfIPNg~R~Y----y----l~RSQPPlla~mV~~~~~ 217 (554)
T PLN02567 150 FREVYYWDSYWVIRGLLASKMY----ETAKGVVENLLYLVDTYGFVPNGARAY----Y----TNRSQPPLLSAMVLAVYA 217 (554)
T ss_pred cCccchHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHcCcCCCCCccc----c----cCCCCcHHHHHHHHHHHH
Confidence 3445778999999999998764 577778888888888777554322222 2 135556655566655554
Q ss_pred c
Q 029612 121 A 121 (190)
Q Consensus 121 ~ 121 (190)
.
T Consensus 218 ~ 218 (554)
T PLN02567 218 A 218 (554)
T ss_pred h
Confidence 3
No 93
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=51.15 E-value=12 Score=34.22 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 110 QTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 110 ~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
.++++.+||...|.. ....+..+||.+.|.++|.|...+
T Consensus 289 D~~~~~~AL~~~G~~----~~a~~~f~~l~~~~~~~~~~~~~y 327 (612)
T COG3387 289 DASYAALALLAIGYK----KEALRFFEFLPDVQTPNGKLYHKY 327 (612)
T ss_pred cHHHHHHHHHHcCCH----HHHHHHHHHHHHhhCCCCceeeEE
Confidence 457778888888763 267789999999999988765444
No 94
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=51.06 E-value=27 Score=25.74 Aligned_cols=43 Identities=21% Similarity=0.044 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcccCCC-cccccccchhhHHHHHHHHHHhcCCC
Q 029612 20 IAKATKFIEDIQKSDGS-WYGSWGICFTYAAWFAISGLVAAKKT 62 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGs-w~~~~g~~~~~~Ta~al~aL~~~g~~ 62 (190)
|+++++|+.+++..=+- -..++|.......++|..||..+|..
T Consensus 2 ie~~I~w~~~r~~~v~YSm~~R~G~~s~DCSs~V~~ALr~aG~~ 45 (145)
T PF05382_consen 2 IEKAINWMEARKGKVTYSMDSRNGPDSYDCSSFVYQALRAAGFK 45 (145)
T ss_pred HHHHHHHHHHhcCCceEhhhhcCCCCcCchHHHHHHHHHHcCCC
Confidence 78999999887654221 11355666567789999999999874
No 95
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=50.43 E-value=18 Score=31.28 Aligned_cols=73 Identities=26% Similarity=0.287 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhcccCCCccccc-------------ccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH--hh
Q 029612 15 EVKNFIAKATKFIEDIQKSDGSWYGSW-------------GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLL--KI 79 (190)
Q Consensus 15 ~~~~~i~~a~~~L~~~Q~~dGsw~~~~-------------g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll--~~ 79 (190)
+-..+.-.|.+||+.+|++.|+|.-.. |-.+.+..+.+|..|..+-....+..-++.|+.-|. +.
T Consensus 377 ~H~aaFyaAadWlV~NQd~kGGW~~pV~Rsl~egf~~L~PGW~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~pyk~ 456 (594)
T KOG3760|consen 377 QHSAAFYAAADWLVKNQDDKGGWSVPVERSLAEGFLVLPPGWHSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKPYKI 456 (594)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCcchhhhhhhcCccccCcchHhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCCeEe
Confidence 334667789999999999999995211 111222333445555544322123445555555442 33
Q ss_pred ccCCCccc
Q 029612 80 QCEDGGWG 87 (190)
Q Consensus 80 Q~~DGgw~ 87 (190)
-..|||-.
T Consensus 457 ~S~dgGV~ 464 (594)
T KOG3760|consen 457 NSSDGGVR 464 (594)
T ss_pred ecCCCceE
Confidence 44688753
No 96
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=48.85 E-value=1.6e+02 Score=24.51 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=26.8
Q ss_pred hhCCCCCchHHHHHHHHHHHHHHHhcccCCCccc
Q 029612 6 KLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG 39 (190)
Q Consensus 6 ~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~ 39 (190)
+.+....+++..+.++++++|+.+.+.++|.|+.
T Consensus 176 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~ 209 (343)
T cd04794 176 QTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPS 209 (343)
T ss_pred hhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 3344445678889999999999999888998853
No 97
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=47.49 E-value=71 Score=26.56 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHHHhhccCCCcccc
Q 029612 63 YSNCLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 63 ~~~~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
....+.++++++|+.+.+.++|.|..
T Consensus 184 ~~~~~~i~~~i~~~~~~~~~~g~w~~ 209 (343)
T cd04794 184 PSLAPLIKRSLDYLLSLQFPSGNFPS 209 (343)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 34678999999999999888888854
No 98
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=46.09 E-value=28 Score=30.05 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHhhccCCCcc
Q 029612 65 NCLAIRKATDFLLKIQCEDGGW 86 (190)
Q Consensus 65 ~~~~i~ra~~~Ll~~Q~~DGgw 86 (190)
.-+.++=+++||+++|.++|.+
T Consensus 96 llde~kwg~D~llkm~~~~~~~ 117 (444)
T PF00759_consen 96 LLDEAKWGLDWLLKMQDSDGTF 117 (444)
T ss_dssp HHHHHHHHHHHHHHTBSCTTEE
T ss_pred HHHHHHHHHHHHHhccCCCCce
Confidence 3567788899999999996654
No 99
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=45.76 E-value=2.7 Score=21.68 Aligned_cols=13 Identities=38% Similarity=0.803 Sum_probs=6.6
Q ss_pred HHHhcccCCCccc
Q 029612 27 IEDIQKSDGSWYG 39 (190)
Q Consensus 27 L~~~Q~~dGsw~~ 39 (190)
|-..|++||+|..
T Consensus 5 I~~s~RpDGt~RK 17 (27)
T PF09282_consen 5 IPASQRPDGTWRK 17 (27)
T ss_dssp E--EE-TTS-EE-
T ss_pred cCcccCCCCCccc
Confidence 4567899999964
No 100
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=39.73 E-value=3.1e+02 Score=25.29 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=57.4
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhhccCCC-ccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHH
Q 029612 54 SGLVAAKKTYSNCLAIRKATDFLLKIQCEDG-GWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLH 132 (190)
Q Consensus 54 ~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~ 132 (190)
.+|...|-.+.+++.+.+.++=|.+.-..+| ||........+ .+.. .+.+=+..|.|-...+...+..+ ..+
T Consensus 485 l~l~~fg~i~~~D~~~~~t~~~I~~~L~~~~~gi~RY~~~~~d-~~~~--~~~~w~i~t~Wl~~~~~~~g~~~----~a~ 557 (612)
T COG3387 485 LGLVLFGFIPPDDPRILATVEAIERELLVDGGGIRRYNNEYDD-GLGG--DNGPWIITTLWLSEYYLALGRLD----EAK 557 (612)
T ss_pred hhccccCccCCCCHHHHHHHHHHHHHHhhcCCcEEcCcccccc-ccCC--CCCcceeehhHHHHHHHHccchH----HHH
Confidence 3444455544466778888888877777777 56432110010 0110 11244567888888888887643 677
Q ss_pred HHHHHHHhcccCCCCCCCC
Q 029612 133 RAAKLLINSQLEDGDFPQQ 151 (190)
Q Consensus 133 ~a~~~L~~~Q~~~Ggw~~~ 151 (190)
+.++||+++++++|-.++.
T Consensus 558 ~ll~~l~~~a~~~gll~EQ 576 (612)
T COG3387 558 KLLEWLLAFASPLGLLPEQ 576 (612)
T ss_pred HHHHHHHHhcCCCCCcchh
Confidence 7899999999999988754
No 101
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=39.71 E-value=2.3e+02 Score=24.98 Aligned_cols=66 Identities=14% Similarity=0.021 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccc-------cchhhHHHHHHHHHH---hcCCC---CCcHHHHHHHHHHHHhhccC
Q 029612 17 KNFIAKATKFIEDIQKSDGSWYGSWG-------ICFTYAAWFAISGLV---AAKKT---YSNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 17 ~~~i~~a~~~L~~~Q~~dGsw~~~~g-------~~~~~~Ta~al~aL~---~~g~~---~~~~~~i~ra~~~Ll~~Q~~ 82 (190)
...++++++.+...|.+||.++.... ....|...+++..-. ..|.. ...-+.+++.++|+.+..++
T Consensus 168 ~~l~~~~l~~~~~~q~~~G~~p~~~P~~~~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~~~ 246 (509)
T PF05592_consen 168 AALYRKWLRDFADSQRPDGLLPSVAPSYGGGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRVDD 246 (509)
T ss_dssp HHHHHHHHHHHHGGTTTSTT-SSBSS---SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB-T
T ss_pred HHHHHHHHHHHHHhhcccCCceEEecccCCCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 46899999999999999999864211 112333333322211 12432 11347889999999987776
No 102
>PLN02973 beta-fructofuranosidase
Probab=39.66 E-value=2.9e+02 Score=25.02 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHcCCCCC-----CcHHHHHHHHHHHhcc------------cCCCCCCCCcccccccCceeeccCCcc
Q 029612 107 NLVQTAWAMMSLIHAGQMER-----DPTPLHRAAKLLINSQ------------LEDGDFPQQELTGVFMENCMLHYPIYR 169 (190)
Q Consensus 107 ~~~~Ta~al~aL~~~~~~~~-----~~~~i~~a~~~L~~~Q------------~~~Ggw~~~~~~g~~~~~~~~~~~~~~ 169 (190)
.++.+-|=+++|........ +...+++|+++|++-= .+||+..-+-..|. .-|++|-
T Consensus 223 pVDS~LWWIIllraY~k~TgD~s~~e~pevQrgi~lil~lcL~~~Fd~~ptLlVpDgs~miDrrMgv------~G~pLei 296 (571)
T PLN02973 223 PVDSGFWWIILLRAYTKSTGDSSLADMPECQKGIRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGV------YGYPIEI 296 (571)
T ss_pred ccchhhHHHHHHHHHHHhccchhhhhcHHHHHHHHHHHHHhcccccCCCceEeccCCcccccccccc------CCccHHH
Confidence 36777787777766544211 1238999999999921 13333221111111 2346666
Q ss_pred chHHHHHHHHHHHhh
Q 029612 170 NIFPMWALAEYRSRL 184 (190)
Q Consensus 170 ~~~~l~aL~~~~~~~ 184 (190)
.+.-.+||--++..+
T Consensus 297 QaLfy~ALR~a~~~L 311 (571)
T PLN02973 297 QALFFMALRCALLLL 311 (571)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666777777776533
No 103
>PLN02909 Endoglucanase
Probab=38.68 E-value=42 Score=29.89 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=21.5
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCcccc
Q 029612 60 KKTYSNCLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 60 g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
|..+...+.++-.++||+++|.+||++-.
T Consensus 117 g~~~d~ldeikw~~D~llk~~~~~~~~y~ 145 (486)
T PLN02909 117 GELENVRAAIRWGTDYFLKAASRKNRLYV 145 (486)
T ss_pred CChHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 33333467788899999999999887643
No 104
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=38.30 E-value=25 Score=27.33 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=27.3
Q ss_pred hhhCCCCCchHHHHHHHHHHHHHHHhcccCCCccc
Q 029612 5 KKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG 39 (190)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~ 39 (190)
+|.||++-...++++|.+++.|.. +|.|.|.+
T Consensus 198 HEtYPtYh~~~v~~Vi~N~VkWa~---np~~a~~~ 229 (261)
T COG4813 198 HETYPTYHDADVQKVIRNAVKWAY---NPAPAWKG 229 (261)
T ss_pred CcCCCccccccHHHHHHhhhhhhc---CCcccccc
Confidence 478899999999999999999986 57777754
No 105
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=38.20 E-value=2.6e+02 Score=24.07 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCCC--cc---cccccchhhH--HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC---C
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGS--WY---GSWGICFTYA--AWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE---D 83 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGs--w~---~~~g~~~~~~--Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~---D 83 (190)
.+.++.|++|++-....++++|+ |. ...|....+. ..-.|+++--.|....+++.-.+..+.+++.-|| .
T Consensus 260 ~~L~~eIq~Gi~~~g~~~~~~~~~iyAyEVDG~Gn~l~MDDaNvPSLLa~PYLG~c~~dDpvY~~TRk~iLS~eNPYy~e 339 (434)
T COG3538 260 KELANEIQQGIEQFGKMDHPKGGEIYAYEVDGLGNQLFMDDANVPSLLAAPYLGFCEKDDPVYQNTRKTILSSENPYYYE 339 (434)
T ss_pred HHHHHHHHHHHHHhceecCCCCCeeEEEEecCCCceeeccCCCchhhhhhhhhccccCCCHHHHHHHHHHHhcCCCceec
Confidence 45567777888777777788776 21 0112211111 1234555555666555778899999999998887 3
Q ss_pred CccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Q 029612 84 GGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQ 142 (190)
Q Consensus 84 Ggw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q 142 (190)
|.......+.+ .....+.--+.++.+|... |...++..+++|+..-
T Consensus 340 G~~a~GiGSpH--------Tp~~yvWpiaLaiqgLTa~-----D~~ek~~iL~~L~~td 385 (434)
T COG3538 340 GKYASGIGSPH--------TPDHYVWPIALAIQGLTAN-----DDSEKKEILDMLKATD 385 (434)
T ss_pred ceeeccCCCCC--------CCCcccchHHHHHhhcccC-----ChHHHHHHHHHHHhcc
Confidence 43322222111 1123344455566665443 3347788899998743
No 106
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=36.70 E-value=2.3e+02 Score=22.93 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred hhCCCCCchHHHHHHHHHHHHHHHhcccCCCccccc--c----cchhhH---HHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 029612 6 KLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSW--G----ICFTYA---AWFAISGLVAAKKTYSNCLAIRKATDFL 76 (190)
Q Consensus 6 ~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~--g----~~~~~~---Ta~al~aL~~~g~~~~~~~~i~ra~~~L 76 (190)
.++.. .+++..+.+.+..++|.+....+..+. .| + ...... .++++..|...-.+....+.++++++++
T Consensus 94 ~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~-~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~ 171 (321)
T cd04791 94 YFART-GDPALLEAAAKIAELLAEALERGDPAL-LWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKE 171 (321)
T ss_pred HHHhc-CChHHHHHHHHHHHHHHHHhhcccccc-ccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 33444 567788899999999987654332211 11 0 111222 3444444444322323456778888888
Q ss_pred Hhhcc-CCCccc
Q 029612 77 LKIQC-EDGGWG 87 (190)
Q Consensus 77 l~~Q~-~DGgw~ 87 (190)
++... .+++|.
T Consensus 172 ~~~~~~~~~g~~ 183 (321)
T cd04791 172 LARAVVDDGGLL 183 (321)
T ss_pred HHhhccCCCCce
Confidence 76654 356664
No 107
>PLN02345 endoglucanase
Probab=32.96 E-value=56 Score=28.94 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhccCCCcccc
Q 029612 66 CLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 66 ~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
.+.|+-.++||+++|.+||++-.
T Consensus 85 ldelkw~~Dyllk~~~~~~~~y~ 107 (469)
T PLN02345 85 KDSLKWITDYLINAHPSENVLYI 107 (469)
T ss_pred HHHHhHHHHHHHHhcCCCCeEEE
Confidence 56678899999999999888743
No 108
>PLN02266 endoglucanase
Probab=30.46 E-value=85 Score=28.17 Aligned_cols=24 Identities=38% Similarity=0.239 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHhhccCCCcccc
Q 029612 65 NCLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 65 ~~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
..+.|+-.++||+++|.+||++-.
T Consensus 132 ~Ldelkw~~D~llk~~~~~~~vy~ 155 (510)
T PLN02266 132 AKDAIRWATDYLLKATAHPDTIYV 155 (510)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEE
Confidence 357888899999999998887643
No 109
>PF08124 Lyase_8_N: Polysaccharide lyase family 8, N terminal alpha-helical domain; InterPro: IPR012970 This family consists of a group of secreted bacterial lyase enzymes (4.2.2.1 from EC) capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen.; PDB: 2WCO_A 2X03_B 2WDA_A 1N7N_A 1W3Y_A 1LXK_A 1LOH_A 1OJO_A 1C82_A 1EGU_A ....
Probab=30.20 E-value=3.2e+02 Score=22.72 Aligned_cols=65 Identities=20% Similarity=0.130 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcccCC-Cccccc---ccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q 029612 11 HRTKEVKNFIAKATKFIEDIQKSDG-SWYGSW---GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 11 ~~~~~~~~~i~~a~~~L~~~Q~~dG-sw~~~~---g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 79 (190)
+..+++.+.|.+|++|+.+..-..+ .+.+.| ....+. .....|..+.... ..+.+.+.++.|...
T Consensus 80 Y~n~~l~~~I~~aL~~~~~~~y~~~~~~~gNWW~~eIG~P~---~l~~~liLl~d~l-~~~~~~~~~~~i~~~ 148 (324)
T PF08124_consen 80 YQNPALLNAILKALDWWYDNDYNPSKDEYGNWWDWEIGIPQ---ALGNILILLYDEL-PPELIAKYTAAIDRF 148 (324)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTSSTTS-TTSSHHHHHTHHHH---HHHHHHHHTGGGS-CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccchHH---HHHHHHHHccccc-CHHHHHHHHHHHHHh
Confidence 4578899999999999987654433 111222 111111 1112222233221 356777777776554
No 110
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=29.36 E-value=4.3e+02 Score=24.14 Aligned_cols=92 Identities=13% Similarity=0.317 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcccCCC-------cccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCC
Q 029612 18 NFIAKATKFIEDIQKSDGS-------WYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESY 90 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGs-------w~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~ 90 (190)
..+..|=+|+.+++.++|. |+..||+ +|..++.+|....... +..++.+.-..+.+ .+|-.....
T Consensus 264 ~L~~AadqFiv~r~~~~~~tiiAGypwF~~WGR----Dt~Isl~Gl~l~tgr~---~~A~~iL~~fa~~~-~~GliPN~~ 335 (575)
T TIGR01561 264 KLLRATDDFVVKNHAKDENAIIAGYHWFDDWGR----DSFISLEGLLLIDKQF---DEAKEAILKFANLC-KRGLIPNNF 335 (575)
T ss_pred HHHHHHhhhEEcccCCCCcEEEecCchhccchh----HHHHHHHHHHhcCCcH---HHHHHHHHHHHHHh-HCCCCCCcc
Confidence 3444445555554334442 6667776 5888898888765442 34444444444433 345432221
Q ss_pred CccCCCccCCCCCCCCcHHHHHHHHHHHHHcCC
Q 029612 91 RSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ 123 (190)
Q Consensus 91 ~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~ 123 (190)
..... . ....+++.|-|-+.++.....
T Consensus 336 ~~~g~---~---p~YntvDAtLWfi~al~~Y~~ 362 (575)
T TIGR01561 336 IAFGG---D---PIYNGVDASLWAIHAIDKTFA 362 (575)
T ss_pred CCCCC---C---ccCCCchHHHHHHHHHHHHHH
Confidence 11000 0 012467888898888877643
No 111
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=27.42 E-value=1e+02 Score=16.56 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHH
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFL 76 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~L 76 (190)
-+..||...+. .+.+|++||
T Consensus 18 ~~~~AL~~~~~------nve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNG------NVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTT------SHHHHHHHH
T ss_pred HHHHHHHHcCC------CHHHHHHhC
Confidence 45566665543 466777776
No 112
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=27.32 E-value=1.6e+02 Score=25.07 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCCccc
Q 029612 15 EVKNFIAKATKFIEDIQKSDGSWYG 39 (190)
Q Consensus 15 ~~~~~i~~a~~~L~~~Q~~dGsw~~ 39 (190)
...+.|+..++|+.+.|-|+|.++.
T Consensus 242 ~~~~dVK~sldym~~~rfpsGNyP~ 266 (403)
T KOG2787|consen 242 ALLKDVKGSLDYMIQNRFPSGNYPS 266 (403)
T ss_pred hHHHhhhhHHHHHHHccCCCCCCCc
Confidence 3568899999999999999998753
No 113
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=27.17 E-value=91 Score=16.60 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLL 77 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll 77 (190)
..++.||...+. .+.+|++||.
T Consensus 16 ~~~~~AL~~~~~------d~~~A~~~L~ 37 (38)
T cd00194 16 EEARKALRATNN------NVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHhCC------CHHHHHHHHh
Confidence 356666666553 3778888885
No 114
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=5.3e+02 Score=24.09 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHhhccCC
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKT---YSNCLAIRKATDFLLKIQCED 83 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~---~~~~~~i~ra~~~Ll~~Q~~D 83 (190)
.+.++.++++.+-|+.....-=. +..-....+.-.++.|.||+.++.. +..-+..+++.+|+++....|
T Consensus 379 ~~~~~~l~~~r~kL~~~R~~R~~-P~~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~ 450 (667)
T COG1331 379 EEAEEKLERAREKLLAAREKRKQ-PSRDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD 450 (667)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCC-CCCCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc
Confidence 45667777777777664322110 0111112334467788888877542 223577889999999988776
No 115
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=26.55 E-value=53 Score=19.32 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 029612 15 EVKNFIAKATKFIEDIQ 31 (190)
Q Consensus 15 ~~~~~i~~a~~~L~~~Q 31 (190)
.-...++.+++||...|
T Consensus 39 ~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 39 SKASILQKAIDYIKQLQ 55 (55)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 34477888888887655
No 116
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=24.45 E-value=3.3e+02 Score=21.47 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHh-----hccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHc-------CC--C--CCCc
Q 029612 65 NCLAIRKATDFLLK-----IQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA-------GQ--M--ERDP 128 (190)
Q Consensus 65 ~~~~i~ra~~~Ll~-----~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~-------~~--~--~~~~ 128 (190)
+.+.++++++.... .-.+||...... . ....+...+.++|.+|... |. . ..+.
T Consensus 184 d~~~~~~a~~~~~~~~~~~qi~~dG~~p~e~---------~--R~~~~~~Y~~~~L~~l~~~a~~a~~~G~dl~~y~~~~ 252 (272)
T PF05426_consen 184 DDELYDRAVNRFKKGIINKQIDPDGSQPDES---------G--RGERSQHYHNFALQALLTLAELARNQGVDLYSYAPNG 252 (272)
T ss_dssp -HHHHHHHHHHHHHHCHHCCC-TTS-BCCHH---------C--SGCCHHHHHHHHHHHHHHHHHHHHCTT--GCC--CTT
T ss_pred CHHHHHHHHHHHHHhhhhhcccccccccccc---------C--CCCCCchhHHHHHHHHHHHHHHHHHhCCCcccCCCCC
Confidence 45667777776322 233677543210 0 0123455666666555432 21 1 1123
Q ss_pred HHHHHHHHHHHhccc
Q 029612 129 TPLHRAAKLLINSQL 143 (190)
Q Consensus 129 ~~i~~a~~~L~~~Q~ 143 (190)
..|.++++|+..--.
T Consensus 253 ~~l~~a~~~~~~~~~ 267 (272)
T PF05426_consen 253 NRLHKAVEYLAPYIL 267 (272)
T ss_dssp BSHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhc
Confidence 489999999998554
No 117
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=24.10 E-value=2e+02 Score=21.52 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCcccc
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
+.|..-++||..-+.-||+=...+..... + . .-+++.++.-+.||+..-...++|+.
T Consensus 96 d~I~~Lv~~iknP~s~kG~~~~~~~~mp~----~--------~--~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 96 DTIQSLVAYQRDPMSYDGSEESYGCRPVP----E--------D--WMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHHHhhCCcccCcccccccccCCc----c--------c--CCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 46777788888777777741000011000 0 1 12578999999999987767789975
No 118
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=23.02 E-value=2.9e+02 Score=24.33 Aligned_cols=73 Identities=15% Similarity=-0.050 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHc----CCCC---CCcHHHHHHHHH
Q 029612 65 NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA----GQME---RDPTPLHRAAKL 137 (190)
Q Consensus 65 ~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~----~~~~---~~~~~i~~a~~~ 137 (190)
+...++|+++.+...|.+||.+....++.. . .....+.-+.+.++.+... |... ..-..+++.++|
T Consensus 167 ~~~l~~~~l~~~~~~q~~~G~~p~~~P~~~-----~--~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~ 239 (509)
T PF05592_consen 167 DAALYRKWLRDFADSQRPDGLLPSVAPSYG-----G--GGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDY 239 (509)
T ss_dssp -HHHHHHHHHHHHGGTTTSTT-SSBSS--------S--SGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcccCCceEEecccC-----C--CCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999998876433211 0 1112233333333333332 2210 001378889999
Q ss_pred HHhcccC
Q 029612 138 LINSQLE 144 (190)
Q Consensus 138 L~~~Q~~ 144 (190)
+.++.++
T Consensus 240 ~~~~~~~ 246 (509)
T PF05592_consen 240 LERRVDD 246 (509)
T ss_dssp HHTTB-T
T ss_pred HHHhCCc
Confidence 9997766
No 119
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=22.93 E-value=96 Score=18.21 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=18.6
Q ss_pred hhhhCCCC---CchHHHHHHHHHHHHHHHhcc
Q 029612 4 FKKLYPKH---RTKEVKNFIAKATKFIEDIQK 32 (190)
Q Consensus 4 ~~~~~~~~---~~~~~~~~i~~a~~~L~~~Q~ 32 (190)
|+.+.|.. ....-...++.|++||...|.
T Consensus 26 L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~ 57 (60)
T cd00083 26 LRSLLPTLPPSKKLSKAEILRKAVDYIKSLQE 57 (60)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44555554 333445788889999887664
No 120
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=20.47 E-value=1.4e+02 Score=16.80 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=11.9
Q ss_pred CcHHHHHHHHHHHhcc
Q 029612 127 DPTPLHRAAKLLINSQ 142 (190)
Q Consensus 127 ~~~~i~~a~~~L~~~Q 142 (190)
|| .+++++.++++.-
T Consensus 22 Dp-dvqrgL~~ll~~l 36 (42)
T PF07849_consen 22 DP-DVQRGLGFLLAFL 36 (42)
T ss_pred CH-HHHHHHHHHHHHH
Confidence 55 8999999988743
No 121
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=20.01 E-value=1.2e+02 Score=16.01 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHH
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFL 76 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~L 76 (190)
.++.||...+. .+.+|++||
T Consensus 17 ~a~~aL~~~~~------d~~~A~~~L 36 (37)
T smart00165 17 EALKALRAANG------NVERAAEYL 36 (37)
T ss_pred HHHHHHHHhCC------CHHHHHHHH
Confidence 45566665543 266777777
Done!