Query 029612
Match_columns 190
No_of_seqs 184 out of 1117
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 02:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 2.6E-33 9E-38 252.5 17.0 180 5-188 545-727 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 7.3E-32 2.5E-36 240.1 18.0 165 16-185 464-629 (631)
3 1qqf_A Protein (complement C3D 99.8 1.6E-20 5.4E-25 151.6 14.4 147 17-183 88-276 (277)
4 1hzf_A Complement factor C4A; 99.8 2.9E-20 9.8E-25 155.8 15.8 155 13-187 86-366 (367)
5 3dss_B Geranylgeranyl transfer 99.8 7.9E-21 2.7E-25 157.0 12.2 125 20-162 116-241 (331)
6 2wy7_A Complement C3D fragment 99.8 3E-20 1E-24 152.3 14.7 151 17-187 104-296 (310)
7 2h6f_B Protein farnesyltransfe 99.8 8.5E-21 2.9E-25 161.8 10.2 125 20-162 174-300 (437)
8 2h6f_B Protein farnesyltransfe 99.8 3.9E-20 1.3E-24 157.7 11.2 140 18-180 121-262 (437)
9 1n4q_B Geranyltransferase type 99.8 8E-19 2.8E-23 147.1 12.8 125 20-162 144-272 (377)
10 1w6k_A Lanosterol synthase; cy 99.8 5.4E-19 1.8E-23 159.4 11.5 151 14-179 477-661 (732)
11 1qqf_A Protein (complement C3D 99.8 4.6E-18 1.6E-22 137.2 13.1 133 10-144 30-173 (277)
12 2sqc_A Squalene-hopene cyclase 99.8 9.6E-18 3.3E-22 149.3 16.4 149 14-180 394-566 (631)
13 3dss_B Geranylgeranyl transfer 99.7 9.2E-18 3.1E-22 138.7 12.0 139 18-181 162-302 (331)
14 3q7a_B Farnesyltransferase bet 99.7 1.3E-17 4.6E-22 143.3 11.5 156 3-163 152-327 (520)
15 2wy7_A Complement C3D fragment 99.7 3.5E-17 1.2E-21 134.1 11.9 133 11-144 47-189 (310)
16 4acq_A Alpha-2-macroglobulin; 99.7 2.2E-16 7.4E-21 151.2 16.5 124 13-141 978-1108(1451)
17 4fxk_B Complement C4-A alpha c 99.6 2.8E-15 9.4E-20 136.1 15.7 75 13-88 363-440 (767)
18 2hr0_B Complement C3 alpha' ch 99.6 3.8E-15 1.3E-19 137.5 14.9 150 17-186 349-540 (915)
19 1n4q_B Geranyltransferase type 99.6 1.3E-14 4.3E-19 121.6 11.0 119 20-152 69-214 (377)
20 3prx_B Cobra venom factor; imm 99.6 3.7E-16 1.3E-20 150.6 0.4 154 12-186 1024-1269(1642)
21 2pn5_A TEP1R, thioester-contai 99.5 1.2E-14 4.2E-19 138.5 10.5 146 17-185 923-1106(1325)
22 1r76_A Pectate lyase; A-helica 99.5 1.1E-14 3.8E-19 121.8 8.2 137 12-149 169-334 (408)
23 3q7a_B Farnesyltransferase bet 99.5 1.1E-13 3.8E-18 119.0 13.0 119 18-150 109-236 (520)
24 2hr0_B Complement C3 alpha' ch 99.4 9.9E-13 3.4E-17 121.5 14.1 132 12-144 293-434 (915)
25 1r76_A Pectate lyase; A-helica 99.4 4.3E-13 1.5E-17 112.2 10.1 136 19-158 82-278 (408)
26 2b39_A C3; thioester, immune d 99.4 4.9E-12 1.7E-16 122.9 17.3 109 12-121 1040-1153(1661)
27 1gxm_A Pectate lyase; mechanis 99.4 2.6E-13 8.8E-18 110.7 6.1 132 23-158 36-202 (332)
28 2pn5_A TEP1R, thioester-contai 99.3 1.5E-12 5.2E-17 124.1 8.8 133 13-149 867-1005(1325)
29 3cu7_A Complement C5; Mg domai 99.3 7.6E-11 2.6E-15 114.7 16.0 153 13-186 1042-1306(1676)
30 1gxm_A Pectate lyase; mechanis 99.2 6.6E-12 2.2E-16 102.4 5.9 130 11-143 90-251 (332)
31 3dra_B Geranylgeranyltransfera 99.2 9.9E-11 3.4E-15 98.1 11.9 126 20-162 117-297 (390)
32 1hzf_A Complement factor C4A; 99.1 2.7E-10 9.3E-15 95.2 10.0 118 49-180 65-196 (367)
33 3dra_B Geranylgeranyltransfera 99.1 6.6E-10 2.3E-14 93.2 10.7 140 19-182 192-362 (390)
34 2bb6_A TCII, TC II, transcobal 99.0 4.7E-10 1.6E-14 94.3 8.1 107 21-149 155-269 (414)
35 2pmv_A Gastric intrinsic facto 98.8 1.4E-08 4.8E-13 85.0 10.0 105 18-149 130-245 (399)
36 4acq_A Alpha-2-macroglobulin; 98.6 9.2E-08 3.1E-12 92.0 9.7 105 67-181 983-1090(1451)
37 2bb6_A TCII, TC II, transcobal 98.5 2.5E-07 8.6E-12 77.8 8.1 83 14-122 202-285 (414)
38 2pmv_A Gastric intrinsic facto 98.4 3.8E-07 1.3E-11 76.3 7.1 84 13-123 178-262 (399)
39 4fxk_B Complement C4-A alpha c 98.3 3.4E-06 1.2E-10 76.5 9.9 120 48-181 341-474 (767)
40 3sdr_A Alpha-bisabolene syntha 98.0 1.5E-05 5E-10 72.6 8.5 112 14-143 50-164 (817)
41 2b39_A C3; thioester, immune d 98.0 3.6E-05 1.2E-09 75.2 10.7 73 67-151 1046-1120(1661)
42 3s9v_A Abietadiene synthase, c 97.9 4E-05 1.4E-09 69.5 8.4 106 17-143 30-137 (785)
43 3p5p_A Taxadiene synthase; cla 97.8 2.8E-05 9.7E-10 70.3 7.2 104 18-142 8-115 (764)
44 3pya_A ENT-copalyl diphosphate 97.8 5.8E-05 2E-09 67.8 8.1 82 44-143 32-113 (727)
45 3prx_B Cobra venom factor; imm 97.8 3.4E-06 1.1E-10 82.0 0.0 102 67-182 1030-1139(1642)
46 3cu7_A Complement C5; Mg domai 97.6 0.00015 5E-09 71.0 8.1 72 68-151 1048-1121(1676)
47 3pmm_A Putative cytoplasmic pr 97.0 0.0086 2.9E-07 49.9 11.3 157 18-183 194-380 (382)
48 3pya_A ENT-copalyl diphosphate 96.7 0.0023 7.8E-08 57.6 6.3 57 20-79 52-111 (727)
49 3p5p_A Taxadiene synthase; cla 96.7 0.0024 8.3E-08 57.8 6.1 58 19-79 54-114 (764)
50 3s9v_A Abietadiene synthase, c 96.7 0.0022 7.5E-08 58.2 5.8 59 18-79 74-135 (785)
51 3sdr_A Alpha-bisabolene syntha 96.6 0.0026 8.9E-08 58.0 6.1 59 18-79 101-162 (817)
52 1lf6_A Glucoamylase; (alpha/al 96.5 0.031 1.1E-06 50.0 12.1 127 15-151 293-440 (684)
53 1nc5_A Hypothetical protein YT 96.3 0.072 2.5E-06 44.0 12.3 130 48-184 214-368 (373)
54 1ulv_A Glucodextranase; GH fam 95.7 0.33 1.1E-05 45.4 15.2 130 13-151 279-432 (1020)
55 3pmm_A Putative cytoplasmic pr 95.1 0.31 1.1E-05 40.5 11.6 109 12-121 257-377 (382)
56 2gz6_A N-acetyl-D-glucosamine 94.8 0.18 6.1E-06 41.4 9.4 126 18-148 15-158 (388)
57 3k11_A Putative glycosyl hydro 93.2 0.64 2.2E-05 39.4 9.9 127 49-184 268-414 (445)
58 1nc5_A Hypothetical protein YT 93.2 0.49 1.7E-05 38.9 9.0 110 12-121 235-364 (373)
59 2gz6_A N-acetyl-D-glucosamine 92.4 0.46 1.6E-05 38.9 7.8 71 11-81 70-152 (388)
60 3k11_A Putative glycosyl hydro 90.5 0.74 2.5E-05 39.0 7.2 75 12-86 288-371 (445)
61 3gt5_A N-acetylglucosamine 2-e 89.9 1.1 3.7E-05 37.2 7.7 127 16-149 11-157 (402)
62 3gt5_A N-acetylglucosamine 2-e 88.8 0.49 1.7E-05 39.3 4.8 109 67-182 13-127 (402)
63 1fp3_A N-acyl-D-glucosamine 2- 88.1 2.1 7.1E-05 35.2 8.3 130 14-148 13-166 (402)
64 2vn4_A Glucoamylase; hydrolase 86.6 16 0.00054 32.1 13.3 141 22-180 12-199 (599)
65 1fp3_A N-acyl-D-glucosamine 2- 84.8 6.9 0.00024 32.0 9.7 110 68-185 18-139 (402)
66 1wgn_A UBAP1, ubiquitin associ 83.3 1.6 5.4E-05 26.4 3.7 28 51-84 35-62 (63)
67 2ahf_A Unsaturated glucuronyl 83.2 9.2 0.00031 31.5 9.7 134 12-147 105-262 (377)
68 2ahf_A Unsaturated glucuronyl 78.7 26 0.00089 28.8 13.8 163 12-183 165-367 (377)
69 2dna_A Unnamed protein product 78.6 2.5 8.6E-05 26.0 3.6 28 51-84 36-63 (67)
70 1vej_A Riken cDNA 4931431F19; 74.4 3.6 0.00012 25.8 3.6 28 51-84 46-73 (74)
71 1lf6_A Glucoamylase; (alpha/al 74.1 14 0.00049 32.7 8.7 62 18-80 359-429 (684)
72 1wgn_A UBAP1, ubiquitin associ 71.4 3.9 0.00013 24.7 3.0 27 113-145 35-61 (63)
73 1vg5_A RSGI RUH-014, rhomboid 71.2 4.1 0.00014 25.5 3.2 29 50-84 44-72 (73)
74 2zbl_A Putative isomerase; N-a 70.2 10 0.00035 31.4 6.5 104 68-181 16-124 (421)
75 1gai_A Glucoamylase-471; hydro 70.2 50 0.0017 28.0 13.4 142 22-181 13-199 (472)
76 2fba_A Glucoamylase Glu1; (alp 66.1 39 0.0013 28.8 9.4 120 48-180 70-230 (492)
77 2cpw_A CBL-interacting protein 65.6 5.1 0.00018 24.2 2.8 28 50-82 34-61 (64)
78 2zbl_A Putative isomerase; N-a 64.7 57 0.002 26.7 10.0 78 12-89 67-157 (421)
79 1wji_A Tudor domain containing 64.5 8.3 0.00029 23.2 3.6 28 50-83 24-51 (63)
80 2dah_A Ubiquilin-3; UBA domain 64.0 8.7 0.0003 22.3 3.5 26 51-82 26-51 (54)
81 2zzr_A Unsaturated glucuronyl 63.0 14 0.00047 30.7 5.8 135 12-147 131-287 (397)
82 3ren_A Glycosyl hydrolase, fam 62.8 51 0.0017 26.9 9.0 142 14-181 187-349 (350)
83 1wiv_A UBP14, ubiquitin-specif 61.8 10 0.00034 23.6 3.7 27 50-82 44-70 (73)
84 4ae4_A Ubiquitin-associated pr 61.4 7.1 0.00024 26.7 3.2 60 20-79 36-114 (118)
85 3e6u_A LANC-like protein 1; al 60.9 14 0.00046 30.7 5.5 32 8-39 244-275 (411)
86 2crn_A Ubash3A protein; compac 60.7 6.5 0.00022 23.8 2.6 28 49-81 23-50 (64)
87 2cos_A Serine/threonine protei 60.4 11 0.00036 22.1 3.3 30 50-84 24-53 (54)
88 3k7x_A LIN0763 protein; Q92DQ0 58.1 27 0.00093 28.2 6.7 155 11-184 62-229 (349)
89 2okx_A Rhamnosidase B; alpha b 57.6 1.2E+02 0.004 28.0 11.6 122 13-149 543-675 (956)
90 2knz_A Ubiquilin-4; cytoplasm, 56.9 10 0.00035 21.8 2.9 25 50-80 27-51 (53)
91 2p0v_A Hypothetical protein BT 54.7 50 0.0017 28.2 7.9 78 106-183 177-291 (489)
92 2z07_A Putative uncharacterize 54.3 87 0.003 25.5 10.2 64 19-87 4-70 (420)
93 1ulv_A Glucodextranase; GH fam 53.5 20 0.00068 33.6 5.7 66 109-180 332-398 (1020)
94 3rrs_A Cellobiose phosphorylas 51.9 1.4E+02 0.0048 27.1 12.5 34 2-35 442-479 (822)
95 1whc_A RSGI RUH-027, UBA/UBX 3 50.5 13 0.00045 22.3 2.8 27 50-81 24-50 (64)
96 2dag_A Ubiquitin carboxyl-term 50.5 13 0.00045 23.1 2.8 28 50-82 24-51 (74)
97 2zzr_A Unsaturated glucuronyl 49.8 1.1E+02 0.0037 25.2 15.4 164 12-182 190-391 (397)
98 1vek_A UBP14, ubiquitin-specif 47.1 17 0.00058 23.2 3.0 27 50-81 44-70 (84)
99 1veg_A NEDD8 ultimate buster-1 46.9 19 0.00066 22.9 3.2 27 49-81 43-69 (83)
100 2bwb_A Ubiquitin-like protein 45.6 17 0.00058 20.3 2.5 22 51-78 24-45 (46)
101 2dak_A Ubiquitin carboxyl-term 45.5 16 0.00056 21.7 2.6 27 50-82 24-50 (63)
102 1wr1_B Ubiquitin-like protein 45.2 20 0.0007 21.1 3.0 23 51-79 34-56 (58)
103 2dai_A Ubadc1, ubiquitin assoc 43.8 30 0.001 21.9 3.8 27 50-82 44-70 (83)
104 2g3q_A Protein YBL047C; endocy 40.4 25 0.00086 18.9 2.7 22 51-78 20-41 (43)
105 3a0o_A Oligo alginate lyase; a 39.5 1.4E+02 0.0048 26.6 8.9 85 49-148 318-411 (776)
106 2ekk_A UBA domain from E3 ubiq 39.3 30 0.001 19.1 2.9 23 50-79 24-46 (47)
107 3a0o_A Oligo alginate lyase; a 37.6 63 0.0022 28.9 6.3 71 14-86 332-411 (776)
108 1ify_A HHR23A, UV excision rep 37.5 25 0.00087 19.7 2.5 23 50-78 23-45 (49)
109 3e6u_A LANC-like protein 1; al 35.8 1.1E+02 0.0037 25.1 7.1 23 66-88 253-275 (411)
110 1ut9_A Cellulose 1,4-beta-cell 34.1 56 0.0019 28.6 5.2 20 66-85 230-249 (609)
111 4fnv_A Heparinase III protein, 32.8 1.9E+02 0.0065 25.7 8.5 120 13-149 236-371 (702)
112 2jy5_A Ubiquilin-1; UBA, alter 32.7 26 0.00089 20.0 2.0 23 113-141 29-51 (52)
113 1ks8_A Endo-B-1,4-glucanase; c 29.7 52 0.0018 27.5 4.1 22 65-86 92-113 (433)
114 3eu8_A Putative glucoamylase; 28.7 2.1E+02 0.0072 23.9 7.6 127 14-142 20-170 (430)
115 3h7l_A Endoglucanase; dehydrog 27.4 1.3E+02 0.0045 26.2 6.3 66 14-79 190-290 (586)
116 2dkl_A Trinucleotide repeat co 27.1 64 0.0022 20.5 3.3 15 68-82 48-62 (85)
117 3nnb_A Alginate lyase; structu 24.8 2.3E+02 0.0078 23.2 7.1 27 129-155 308-335 (382)
118 2cwb_A Chimera of immunoglobul 24.1 70 0.0024 21.4 3.2 23 51-79 83-105 (108)
119 3gzk_A Cellulase; fold from GH 23.2 1.2E+02 0.0042 26.0 5.4 51 35-86 139-212 (537)
120 3rrs_A Cellobiose phosphorylas 23.1 1.4E+02 0.0048 27.1 6.0 67 18-84 382-479 (822)
121 3c5t_B Exendin-4, exenatide; l 23.1 73 0.0025 16.2 2.4 16 66-81 8-23 (31)
122 3qde_A Cellobiose phosphorylas 22.6 2E+02 0.0069 26.0 6.9 68 17-84 374-472 (811)
123 1ks8_A Endo-B-1,4-glucanase; c 22.4 1.8E+02 0.0062 24.1 6.1 67 13-79 270-341 (433)
124 1rk8_C PYM protein, within the 22.3 23 0.00079 20.9 0.4 13 27-39 13-25 (58)
125 3nnb_A Alginate lyase; structu 21.7 1E+02 0.0035 25.3 4.3 74 15-88 242-330 (382)
126 2okx_A Rhamnosidase B; alpha b 21.6 1.3E+02 0.0043 27.8 5.4 69 18-86 595-674 (956)
127 1wj7_A Hypothetical protein (R 21.6 94 0.0032 20.6 3.4 34 50-89 55-88 (104)
128 3emu_A Leucine rich repeat and 20.9 1.9E+02 0.0066 19.9 5.3 63 10-79 63-127 (161)
129 1v7w_A Chitobiose phosphorylas 20.0 1.8E+02 0.0061 26.0 6.0 19 18-36 364-382 (807)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=2.6e-33 Score=252.48 Aligned_cols=180 Identities=38% Similarity=0.861 Sum_probs=157.6
Q ss_pred hhhCCCCCchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHHhhcc
Q 029612 5 KKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNC---LAIRKATDFLLKIQC 81 (190)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~---~~i~ra~~~Ll~~Q~ 81 (190)
.+.+|.++.++.++.|++|++||++.|++||+|.+.||.+++|.|++++.+|..+|....++ +.++|+++||+++|+
T Consensus 545 ~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~ 624 (732)
T 1w6k_A 545 HKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQM 624 (732)
T ss_dssp HHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCC
T ss_pred ccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcc
Confidence 34467777788889999999999999999999999999999999999999999999864333 799999999999999
Q ss_pred CCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCce
Q 029612 82 EDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENC 161 (190)
Q Consensus 82 ~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~ 161 (190)
+||||++...++....|.+ +..+++..|+|||++|..++.. +..+++++++||+++|+++|+|.++.++|+||+.|
T Consensus 625 ~DGGWge~~~s~~~~~y~~--~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~ 700 (732)
T 1w6k_A 625 ADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSC 700 (732)
T ss_dssp TTSCCCBCTHHHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTE
T ss_pred cCCCCCCCCccccccccCC--CCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCcccccccchh
Confidence 9999998655554444554 4578999999999999998765 44589999999999999999999999999999999
Q ss_pred eeccCCccchHHHHHHHHHHHhhcCCc
Q 029612 162 MLHYPIYRNIFPMWALAEYRSRLLLPE 188 (190)
Q Consensus 162 ~~~~~~~~~~~~l~aL~~~~~~~~~~~ 188 (190)
+++|+.|+++|+|+||++|+++.+.++
T Consensus 701 ~i~Y~~y~~~fpl~AL~~y~~~~~~~~ 727 (732)
T 1w6k_A 701 AISYTSYRNIFPIWALGRFSQLYPERA 727 (732)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHCTTSG
T ss_pred hhcccchhHHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999776543
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.98 E-value=7.3e-32 Score=240.10 Aligned_cols=165 Identities=35% Similarity=0.628 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCC
Q 029612 16 VKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPN 95 (190)
Q Consensus 16 ~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~ 95 (190)
.++.++++++||++.|++||+|.+.|+.+++|.|++++.+|..+|... +.+.++|+++||+++|++||||+....++..
T Consensus 464 ~~~~i~rai~~L~~~Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~~-~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~ 542 (631)
T 2sqc_A 464 AWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDT-REPYIQKALDWVEQHQNPDGGWGEDCRSYED 542 (631)
T ss_dssp TSHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCT-TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTC
T ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHhCcCCCCcCCccccccc
Confidence 347899999999999999999999999999999999999999998754 5789999999999999999999887666655
Q ss_pred CccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCccccc-ccCceeeccCCccchHHH
Q 029612 96 KKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGV-FMENCMLHYPIYRNIFPM 174 (190)
Q Consensus 96 ~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~-~~~~~~~~~~~~~~~~~l 174 (190)
..|.+ ...+++..|+++|++|..++... + ..++|+++||+++|++||||.+++.+|+ ||+.||++|+.|+++|+|
T Consensus 543 ~~~~~--~~~s~v~~Ta~ALlaL~~ag~~~-~-~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l 618 (631)
T 2sqc_A 543 PAYAG--KGASTPSQTAWALMALIAGGRAE-S-EAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPT 618 (631)
T ss_dssp GGGTT--CSSCCHHHHHHHHHHHHHTTCSS-S-HHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHH
T ss_pred cccCC--CCCCCHHHHHHHHHHHHHcCCCC-h-HHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHH
Confidence 55544 46789999999999999998763 3 4899999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHhhc
Q 029612 175 WALAEYRSRLL 185 (190)
Q Consensus 175 ~aL~~~~~~~~ 185 (190)
+||++|++++.
T Consensus 619 ~AL~~y~~~~~ 629 (631)
T 2sqc_A 619 LALGRYKQAIE 629 (631)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998763
No 3
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.85 E-value=1.6e-20 Score=151.65 Aligned_cols=147 Identities=18% Similarity=0.222 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHH-hcccCCCcccccccc--------------hhhHHHHHHHHHHhcCC-----CCCcHHHHHHHHHHH
Q 029612 17 KNFIAKATKFIED-IQKSDGSWYGSWGIC--------------FTYAAWFAISGLVAAKK-----TYSNCLAIRKATDFL 76 (190)
Q Consensus 17 ~~~i~~a~~~L~~-~Q~~dGsw~~~~g~~--------------~~~~Ta~al~aL~~~g~-----~~~~~~~i~ra~~~L 76 (190)
++.|+++++||.+ .|++||+|.+.|+.. ....|++++.+|.+.+. .+...+.|+||++||
T Consensus 88 ~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 167 (277)
T 1qqf_A 88 SQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYL 167 (277)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHH
Confidence 4789999999996 999999998766432 24569999999998843 123578999999999
Q ss_pred HhhccC-CCccccCCCcc--------------------CCCccCCCCCC-CCcHHHHHHHHHHHHHcCCCCCCcHHHHHH
Q 029612 77 LKIQCE-DGGWGESYRSC--------------------PNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQMERDPTPLHRA 134 (190)
Q Consensus 77 l~~Q~~-DGgw~~~~~~~--------------------~~~~~~~~~~~-~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a 134 (190)
.++|++ +++|+....++ .+..|..-++. ..+++.|+|+|++|...+.. ..+.++
T Consensus 168 ~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~ 243 (277)
T 1qqf_A 168 EASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF----DSVPPV 243 (277)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT----TSHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh----hhHHHH
Confidence 998775 33331110000 01112210111 12678999999999998653 268889
Q ss_pred HHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHHHHHHHHh
Q 029612 135 AKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSR 183 (190)
Q Consensus 135 ~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~~ 183 (190)
++||.++|+++|+|.+++ .|+++|+||++|..+
T Consensus 244 v~wL~~qq~~~Ggw~sTq----------------~T~~aL~AL~~y~~~ 276 (277)
T 1qqf_A 244 VRWLNDERYYGGGYGSTQ----------------ATFMVFQALAQYRAD 276 (277)
T ss_dssp HHHHHHCCCCTTSTTCHH----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCeecch----------------HHHHHHHHHHHHHHh
Confidence 999999999999999876 588999999999875
No 4
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.84 E-value=2.9e-20 Score=155.84 Aligned_cols=155 Identities=19% Similarity=0.253 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCccccccc--chhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHhhccCCCccccC
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGI--CFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGGWGES 89 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~--~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~DGgw~~~ 89 (190)
+++..+.|+++++||++.|++||+| +.|+. +++|.|++|+.+|..++.. ..+.+.++|+++||+++|++||+|.+.
T Consensus 86 ~~~~~~~i~~g~~~ll~~Q~~dGgf-~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 86 KDHAVDLIQKGYMRIQQFRKADGSY-AAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCe-eccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccc
Confidence 5677789999999999999999998 66644 6789999999999988753 235789999999999999999999654
Q ss_pred CCccC---------------------------------------------------------------------------
Q 029612 90 YRSCP--------------------------------------------------------------------------- 94 (190)
Q Consensus 90 ~~~~~--------------------------------------------------------------------------- 94 (190)
....+
T Consensus 165 ~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL 244 (367)
T 1hzf_A 165 CPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYAL 244 (367)
T ss_dssp SCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred cccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHH
Confidence 21110
Q ss_pred -------------------------CCccCCCCC----------------------CC-CcHHHHHHHHHHHHHcCCCCC
Q 029612 95 -------------------------NKKYIPLDG----------------------NR-SNLVQTAWAMMSLIHAGQMER 126 (190)
Q Consensus 95 -------------------------~~~~~~~~~----------------------~~-s~~~~Ta~al~aL~~~~~~~~ 126 (190)
+..|++... .. .+++.|||+|++|...+.
T Consensus 245 ~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~--- 321 (367)
T 1hzf_A 245 TLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG--- 321 (367)
T ss_dssp HHTTCCHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC---
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC---
Confidence 000111000 01 157889999999987643
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHHHHHHHHhhcCC
Q 029612 127 DPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLP 187 (190)
Q Consensus 127 ~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~ 187 (190)
+...+.+.++||.++|+.+|||.+++ .|+++|+||++|..+....
T Consensus 322 ~~~~~~~iv~WL~~qrn~~Ggw~sTq----------------dTvvAL~AL~~y~~~~~~~ 366 (367)
T 1hzf_A 322 KAEMADQASAWLTRQGSFQGGFRSTQ----------------DTVIALDALSAYWIASHTT 366 (367)
T ss_dssp SSHHHHHHHHHHHHHTTSTTCSCSHH----------------HHHHHHHHHHHHHHHHCC-
T ss_pred chhhhHHHHHHHHhCcCCCCCcccHH----------------HHHHHHHHHHHHHHHcCCC
Confidence 22378899999999999999999877 5889999999999887653
No 5
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.84 E-value=7.9e-21 Score=157.03 Aligned_cols=125 Identities=26% Similarity=0.396 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcccCCCcccc-cccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCcc
Q 029612 20 IAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKY 98 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~-~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~ 98 (190)
++++++||.+.|++||+|.+. ||.+++..|..|+.+|..+|.. +...++|+++||+++|++||||+..
T Consensus 116 ~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~--~~~~~~k~v~~L~s~Q~~dGGfg~~--------- 184 (331)
T 3dss_B 116 VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKL--DAINVEKAIEFVLSCMNFDGGFGCR--------- 184 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCG--GGSCHHHHHHHHHTTBCTTSCBCSS---------
T ss_pred HHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCcCCCCcCCC---------
Confidence 789999999999999999875 8888888899999999888864 4568999999999999999999875
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCcee
Q 029612 99 IPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 99 ~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~ 162 (190)
+ +.++++..|.+++.+|...+... ...++++++||+++|+++|||...+ +..++.|+
T Consensus 185 -p--g~esh~~~T~~al~aL~llg~~~--~~~~~~~~~wL~~~Q~~dGGf~gr~--~k~~D~cy 241 (331)
T 3dss_B 185 -P--GSESHAGQIYCCTGFLAITSQLH--QVNSDLLGWWLCERQLPSGGLNGRP--EKLPDVCY 241 (331)
T ss_dssp -T--TCCCCHHHHHHHHHHHHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCSST--TCCCCHHH
T ss_pred -C--CCCCcHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHhCCCCCCcCCCC--CCCCcchh
Confidence 1 56788999999999999887653 2258899999999999999998665 24555665
No 6
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.84 E-value=3e-20 Score=152.31 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHH-hcccCCCcccccccc--------------hhhHHHHHHHHHHhcCCC-----CCcHHHHHHHHHHH
Q 029612 17 KNFIAKATKFIED-IQKSDGSWYGSWGIC--------------FTYAAWFAISGLVAAKKT-----YSNCLAIRKATDFL 76 (190)
Q Consensus 17 ~~~i~~a~~~L~~-~Q~~dGsw~~~~g~~--------------~~~~Ta~al~aL~~~g~~-----~~~~~~i~ra~~~L 76 (190)
++.|+++++||.+ .|++||+|.+.|+.. ....|++|+.+|.+.+.. +...+.|+||++||
T Consensus 104 ~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 183 (310)
T 2wy7_A 104 SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFL 183 (310)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHH
Confidence 4789999999996 999999998776532 245699999999988431 23578999999999
Q ss_pred HhhccC-CCccccCCC-------------------cc-CCCccCCCCCC-CCcHHHHHHHHHHHHHcCCCCCCcHHHHHH
Q 029612 77 LKIQCE-DGGWGESYR-------------------SC-PNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQMERDPTPLHRA 134 (190)
Q Consensus 77 l~~Q~~-DGgw~~~~~-------------------~~-~~~~~~~~~~~-~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a 134 (190)
.++|++ +++|+.... .. ....|+.-++. ..+++.|+|+|++|...+.. ..+.++
T Consensus 184 ~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~ 259 (310)
T 2wy7_A 184 EANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPV 259 (310)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT----TTHHHH
T ss_pred HHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh----hhHHHH
Confidence 998875 333322100 00 01122221111 12678999999999998753 268899
Q ss_pred HHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHHHHHHHHhhcCC
Q 029612 135 AKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLP 187 (190)
Q Consensus 135 ~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~ 187 (190)
++||.++|+++|+|.+++ .|+++|+||++|.++.+.+
T Consensus 260 v~wL~~qq~~~Ggw~sTq----------------~T~~aL~AL~~y~~~~~~~ 296 (310)
T 2wy7_A 260 VRWLNEQRYYGGGYGSTQ----------------ATFMVFQALAQYQKDAPDH 296 (310)
T ss_dssp HHHHHHTTCCCCSTTCHH----------------HHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHccCCCCCeeccH----------------HHHHHHHHHHHHHHHcCCC
Confidence 999999999999998766 5789999999999987663
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.83 E-value=8.5e-21 Score=161.79 Aligned_cols=125 Identities=17% Similarity=0.230 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcccCCCcccc-cccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCcc
Q 029612 20 IAKATKFIEDIQKSDGSWYGS-WGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKY 98 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~-~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~ 98 (190)
++++++||.+.|++||+|.+. ||.+++..|..++.+|..+|.. +.+.++|+++||+++|++||||++.
T Consensus 174 i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~--~~~~v~k~~~~L~s~Q~~DGGwg~~--------- 242 (437)
T 2h6f_B 174 REKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGV--------- 242 (437)
T ss_dssp HHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSS---------
T ss_pred HHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCCCCCcCCC---------
Confidence 789999999999999999885 8888888888888888888864 4568999999999999999999974
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc-CCCCCCCCcccccccCcee
Q 029612 99 IPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL-EDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 99 ~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~-~~Ggw~~~~~~g~~~~~~~ 162 (190)
+ +..|++..|++||.+|..++... ...++++++||+++|. ++|||..++ +..++.||
T Consensus 243 -p--g~eSh~~~T~~Al~aL~~lg~~~--~~~~~rl~~wL~~rQ~~~~GGf~gRp--~K~~D~cY 300 (437)
T 2h6f_B 243 -P--GMEAHGGYTFCGLAALVILKRER--SLNLKSLLQWVTSRQMRFEGGFQGRC--NKLVDGCY 300 (437)
T ss_dssp -T--TSCCCHHHHHHHHHHHHHHTCGG--GSCHHHHHHHHHHTBCTTTCSBBSST--TSCBCTTH
T ss_pred -C--CCCCCccHHHHHHHHHHHcCCCC--cccHHHHHHHHHhcCCCCCCCccCCC--CCccchHH
Confidence 2 56789999999999999998753 2368999999999998 789997665 24556665
No 8
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.82 E-value=3.9e-20 Score=157.74 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcccCCCccc-ccccchhhHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHhhccCCCccccCCCccCC
Q 029612 18 NFIAKATKFIEDIQKSDGSWYG-SWGICFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCEDGGWGESYRSCPN 95 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~-~~g~~~~~~Ta~al~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~ 95 (190)
+.++++++||++.|++||+|.+ .|+.++++.|..||.+|...|... .+...++|+++||.++|++||||+...
T Consensus 121 ~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~----- 195 (437)
T 2h6f_B 121 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHV----- 195 (437)
T ss_dssp HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSST-----
T ss_pred HHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecC-----
Confidence 5689999999999999999987 688889999999999999998631 023458999999999999999998631
Q ss_pred CccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHH
Q 029612 96 KKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMW 175 (190)
Q Consensus 96 ~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~ 175 (190)
.+.+++..|..++.+|...+... ...++|+++||+++|++||||+..+- .-+ ....|.++|.
T Consensus 196 -------~Ge~d~~~ty~A~~~L~llg~~~--~~~v~k~~~~L~s~Q~~DGGwg~~pg--~eS-------h~~~T~~Al~ 257 (437)
T 2h6f_B 196 -------GGEVDVRSAYCAASVASLTNIIT--PDLFEGTAEWIARCQNWEGGIGGVPG--MEA-------HGGYTFCGLA 257 (437)
T ss_dssp -------TCCBSHHHHHHHHHHHHHTTCCC--TTTTTTHHHHHHHHBCTTSSBCSSTT--SCC-------CHHHHHHHHH
T ss_pred -------CCCccchhHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCCCCCcCCCCC--CCC-------CccHHHHHHH
Confidence 24567777766777776666542 23788999999999999999987641 111 1123667777
Q ss_pred HHHHH
Q 029612 176 ALAEY 180 (190)
Q Consensus 176 aL~~~ 180 (190)
||.-.
T Consensus 258 aL~~l 262 (437)
T 2h6f_B 258 ALVIL 262 (437)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77654
No 9
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.79 E-value=8e-19 Score=147.06 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcccCCCccc--ccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCc
Q 029612 20 IAKATKFIEDIQKSDGSWYG--SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKK 97 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~--~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~ 97 (190)
.+++++||.+.|++||||.+ .||.++++.|..|+.++..+|.. +...++|+++||+++|+.||||++.
T Consensus 144 ~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~--~~~~v~ka~~fL~scQn~DGGfGe~-------- 213 (377)
T 1n4q_B 144 KEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW--SGMDMKKAISYIRRSMSYDNGLAQG-------- 213 (377)
T ss_dssp HHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTSSBBSS--------
T ss_pred HHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhcCCCCCCCCC--------
Confidence 37899999999999999998 59999999999999999888873 4568999999999999999999985
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHcCCCCCC-c-HHHHHHHHHHHhcccCCCCCCCCcccccccCcee
Q 029612 98 YIPLDGNRSNLVQTAWAMMSLIHAGQMERD-P-TPLHRAAKLLINSQLEDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 98 ~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~-~-~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~ 162 (190)
+ +..|+...|.+|+.+|...+....+ + ..++++++||+++| +|||..++ +..++.||
T Consensus 214 --p--~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~--nK~~D~CY 272 (377)
T 1n4q_B 214 --A--GLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRP--NKPVDTCY 272 (377)
T ss_dssp --T--TSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSST--TSCCCTTH
T ss_pred --C--CCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCC--CcchhHHH
Confidence 2 4578899999999888887754211 1 26899999999999 89997664 34667776
No 10
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.78 E-value=5.4e-19 Score=159.44 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcc--------------------ccccc--chhhHHHHHHHHHHhcCCC---C---Cc
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWY--------------------GSWGI--CFTYAAWFAISGLVAAKKT---Y---SN 65 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~--------------------~~~g~--~~~~~Ta~al~aL~~~g~~---~---~~ 65 (190)
...++.++++++||++.|++||+|. +.++. +++..|+.+|.+|...+.. . ..
T Consensus 477 ~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~ 556 (732)
T 1w6k_A 477 HIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEI 556 (732)
T ss_dssp CCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhh
Confidence 3456789999999999999999993 11222 2567899999999987531 1 13
Q ss_pred HHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHhcc
Q 029612 66 CLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQ 142 (190)
Q Consensus 66 ~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~---~~i~~a~~~L~~~Q 142 (190)
.+.|+||++||+++|++||||.... .......|++++.||..++....+. ..++++++||+++|
T Consensus 557 ~~~i~rAv~yL~~~Q~~DGsW~g~w-------------g~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q 623 (732)
T 1w6k_A 557 RETLTQGLEFCRRQQRADGSWEGSW-------------GVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQ 623 (732)
T ss_dssp HHHHHHHHHHHHHHSCTTSCCCCSS-------------BSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCCCCCccCcC-------------CCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhc
Confidence 5789999999999999999997642 1344667999999999998753332 48999999999999
Q ss_pred cCCCCCCCCcccccccCceee---ccCCccchHHHHHHHH
Q 029612 143 LEDGDFPQQELTGVFMENCML---HYPIYRNIFPMWALAE 179 (190)
Q Consensus 143 ~~~Ggw~~~~~~g~~~~~~~~---~~~~~~~~~~l~aL~~ 179 (190)
++||||+....+ +....+. .-....|.++|.||..
T Consensus 624 ~~DGGWge~~~s--~~~~~y~~~~~s~v~~TAwALlALl~ 661 (732)
T 1w6k_A 624 MADGGWGEDFES--CEERRYVQSAQSQIHNTCWAMMGLMA 661 (732)
T ss_dssp CTTSCCCBCTHH--HHHTSCCBCSSCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCcc--ccccccCCCCCCCHHHHHHHHHHHHH
Confidence 999999865421 0000010 1122347888888864
No 11
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.77 E-value=4.6e-18 Score=137.18 Aligned_cols=133 Identities=15% Similarity=0.153 Sum_probs=101.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhcccCCCcccccc--cchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHh-hccCCCc
Q 029612 10 KHRTKEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLK-IQCEDGG 85 (190)
Q Consensus 10 ~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g--~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~-~Q~~DGg 85 (190)
..++++..+.|+++++|+++.|++||+| +.|+ .++++.|++|+.+|..++.. ..+.+.++++++||++ .|++||+
T Consensus 30 ~~~~~~~~~~i~~g~~~~l~~q~~dGgf-~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~ 108 (277)
T 1qqf_A 30 LEKRQEALELIKKGYTQQLAFKQPISAY-AAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGV 108 (277)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCc-cccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCC
Confidence 3566788899999999999999999998 5554 36789999999999988752 3467899999999995 9999999
Q ss_pred cccCCCccCCCccCCCCCC-CCcHHHHHHHHHHHHHcCC------CCCCcHHHHHHHHHHHhcccC
Q 029612 86 WGESYRSCPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQ------MERDPTPLHRAAKLLINSQLE 144 (190)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~-~s~~~~Ta~al~aL~~~~~------~~~~~~~i~~a~~~L~~~Q~~ 144 (190)
|......++..+..+..+. ++++..|+|+|++|.+.+. .. ....|++|++||.++++.
T Consensus 109 f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~-~~~~i~~A~~~L~~~~~~ 173 (277)
T 1qqf_A 109 FQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNS-LPGSINKAGEYLEASYLN 173 (277)
T ss_dssp BCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTT-HHHHHHHHHHHHHHHHTT
T ss_pred ccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCc-hHHHHHHHHHHHHHHhcc
Confidence 9876544433222211011 3467789999999998842 22 224899999999998764
No 12
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.77 E-value=9.6e-18 Score=149.29 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccc---------------------cchhhHHHHHHHHHHhcCCCCCcHHHHHHH
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYGSWG---------------------ICFTYAAWFAISGLVAAKKTYSNCLAIRKA 72 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g---------------------~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra 72 (190)
...++.++++++||++.|++||+|.. +. .+.+..|+.+|.+|...+.. ...+.++|+
T Consensus 394 ~~~~~~l~~a~~wLls~Q~~dGgf~~-~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~-~~~~~i~ra 471 (631)
T 2sqc_A 394 RRRRDAMTKGFRWIVGMQSSNGGWGA-YDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYD-DAWKVIRRA 471 (631)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCBCS-SCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCC-TTSHHHHHH
T ss_pred chhHHHHHHHHHHHHhhcCCCCCCCc-cCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCC-ccHHHHHHH
Confidence 34578999999999999999999942 10 13456899999999998864 356899999
Q ss_pred HHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 73 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 73 ~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
++||++.|++||||.... +...+..|++++.+|...+....+ ..++++++||+++|++||||+..+
T Consensus 472 i~~L~~~Q~~DGsw~g~w-------------g~~~~y~Ta~~l~aL~~~g~~~~~-~~i~rav~~L~s~Q~~DGgWg~~~ 537 (631)
T 2sqc_A 472 VEYLKREQKPDGSWFGRW-------------GVNYLYGTGAVVSALKAVGIDTRE-PYIQKALDWVEQHQNPDGGWGEDC 537 (631)
T ss_dssp HHHHHHHCCTTSCCCCSS-------------BSSHHHHHHHHHHHHHHTTCCTTS-HHHHHHHHHHHHTCCTTSCCCCCG
T ss_pred HHHHHHhcCCCCCCCCCC-------------CCCchHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHHhCcCCCCcCCcc
Confidence 999999999999995321 234567899999999988764333 489999999999999999997643
Q ss_pred ccccccCcee---eccCCccchHHHHHHHHH
Q 029612 153 LTGVFMENCM---LHYPIYRNIFPMWALAEY 180 (190)
Q Consensus 153 ~~g~~~~~~~---~~~~~~~~~~~l~aL~~~ 180 (190)
.+ |....+ -.-..+.|.++|.||...
T Consensus 538 ~s--y~~~~~~~~~~s~v~~Ta~ALlaL~~a 566 (631)
T 2sqc_A 538 RS--YEDPAYAGKGASTPSQTAWALMALIAG 566 (631)
T ss_dssp GG--GTCGGGTTCSSCCHHHHHHHHHHHHHT
T ss_pred cc--ccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 21 111100 011223478889888754
No 13
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.75 E-value=9.2e-18 Score=138.68 Aligned_cols=139 Identities=16% Similarity=0.211 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhcccCCCccccccc-chhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCC
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGI-CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNK 96 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~-~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~ 96 (190)
..++++++||+++|++||+|.+.++. +....|++++.+|..+|.. +...++++++||+++|++||||+..
T Consensus 162 ~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~--~~~~~~~~~~wL~~~Q~~dGGf~gr------- 232 (331)
T 3dss_B 162 INVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQL--HQVNSDLLGWWLCERQLPSGGLNGR------- 232 (331)
T ss_dssp SCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHTTBCTTSCBCSS-------
T ss_pred HHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHhCCCCCCcCCC-------
Confidence 45889999999999999999776543 3456799999999998864 2345899999999999999999864
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCC-CCCCCCcccccccCceeeccCCccchHHHH
Q 029612 97 KYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLED-GDFPQQELTGVFMENCMLHYPIYRNIFPMW 175 (190)
Q Consensus 97 ~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~-Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~ 175 (190)
++..+|+..|-|++.+|...+... ...++++++||+++|+.+ |||...+ |..+ .+|.|.++|.
T Consensus 233 -----~~k~~D~cys~w~l~~L~llg~~~--~~~~~~~~~fil~cQ~~~~GGf~~~p--g~~~-------d~~hT~~~l~ 296 (331)
T 3dss_B 233 -----PEKLPDVCYSWWVLASLKIIGRLH--WIDREKLRSFILACQDEETGGFADRP--GDMV-------DPFHTLFGIA 296 (331)
T ss_dssp -----TTCCCCHHHHHHHHHHHHHTTCGG--GSCHHHHHHHHHHTBCTTTCCBCSST--TSCC-------BHHHHHHHHH
T ss_pred -----CCCCCcchhHHHHHHHHHHcCCcc--hhhHHHHHHHHHHhcCCCCCCcCCCC--CCCC-------CHHHHHHHHH
Confidence 145788999999999999887642 125788999999999987 9998764 2222 3456889999
Q ss_pred HHHHHH
Q 029612 176 ALAEYR 181 (190)
Q Consensus 176 aL~~~~ 181 (190)
||+-..
T Consensus 297 ~Ls~~g 302 (331)
T 3dss_B 297 GLSLLG 302 (331)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 998643
No 14
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.73 E-value=1.3e-17 Score=143.27 Aligned_cols=156 Identities=11% Similarity=0.068 Sum_probs=115.1
Q ss_pred hhhhhCCCCCchHHHHHHHHHHHHHHHhcccCCCccc-ccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc
Q 029612 3 LFKKLYPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC 81 (190)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~-~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 81 (190)
+|.+.+|.++.++++..++++++||.+.|++||||.+ .||.++++.|.+|+.+|..+|.. +...++|+++||+++|+
T Consensus 152 ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~kav~fI~scQn 229 (520)
T 3q7a_B 152 IAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII--TPELLHNVDKFVSACQT 229 (520)
T ss_dssp HHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--CHHHHTTHHHHHHTTBC
T ss_pred HhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcC
Confidence 4555667788888877799999999999999999998 49999999999999999988874 57899999999999999
Q ss_pred CCCccccCC------------CccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHHhccc--
Q 029612 82 EDGGWGESY------------RSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMER----DPTPLHRAAKLLINSQL-- 143 (190)
Q Consensus 82 ~DGgw~~~~------------~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~----~~~~i~~a~~~L~~~Q~-- 143 (190)
.||||+... ....++ ....++..+....|-.+|.+|...+.... +...+++.++||..+|.
T Consensus 230 ~DGGfGe~s~~~~~~~~~~~~~~~~rp-~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~ 308 (520)
T 3q7a_B 230 YEGGFACASFPFPSVVPSTSAFPTSEP-SCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEP 308 (520)
T ss_dssp TTSSBCSCEEEEC------------CC-SEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCG
T ss_pred CCCCccCcccccccccccccccccccc-ccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcc
Confidence 999999820 000000 00012456777777777766665544210 11246788999999996
Q ss_pred -CCCCCCCCcccccccCceee
Q 029612 144 -EDGDFPQQELTGVFMENCML 163 (190)
Q Consensus 144 -~~Ggw~~~~~~g~~~~~~~~ 163 (190)
++|||..+. +..++.||.
T Consensus 309 ~e~GGF~GR~--NKlvD~CYS 327 (520)
T 3q7a_B 309 IEGGGFRGRT--NKLVDGCYS 327 (520)
T ss_dssp GGTTCBBSST--TSCBCTTHH
T ss_pred cCCCcccCCC--CCCCchhhh
Confidence 569998765 356777763
No 15
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.72 E-value=3.5e-17 Score=134.06 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=100.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcccCCCcccccc--cchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHh-hccCCCcc
Q 029612 11 HRTKEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLK-IQCEDGGW 86 (190)
Q Consensus 11 ~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g--~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~-~Q~~DGgw 86 (190)
.++++..+.|+++++|+++.|++||+| +.|+ .++++.|++|+.+|..+... ..+.+.++++++||.+ .|++||+|
T Consensus 47 ~~~~~~~~~i~~g~~~~l~~q~~dGgf-~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf 125 (310)
T 2wy7_A 47 EKRQGALELIKKGYTQQLAFRQPSSAF-AAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVF 125 (310)
T ss_dssp THHHHHHHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCB
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCc-ccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCcc
Confidence 456778899999999999999999998 5554 36789999999999988752 3467899999999995 99999999
Q ss_pred ccCCCccCCCccCCCCCC-CCcHHHHHHHHHHHHHcCCC-----CCCcHHHHHHHHHHHhcccC
Q 029612 87 GESYRSCPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQM-----ERDPTPLHRAAKLLINSQLE 144 (190)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-~s~~~~Ta~al~aL~~~~~~-----~~~~~~i~~a~~~L~~~Q~~ 144 (190)
......++..+..+..+. ++++..|+|+|++|.+.+.. .....+|++|++||.++|+.
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~ 189 (310)
T 2wy7_A 126 QEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN 189 (310)
T ss_dssp CCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred ccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhc
Confidence 876544433222221111 35677899999999988431 11224899999999998874
No 16
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=151.23 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=96.7
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCcccccc------cchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHhhccCCCc
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSWG------ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGG 85 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g------~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~DGg 85 (190)
+++..+.|+++++||++.|++||+| +.|+ .+++|.||+|+..|..+... ..+.+.+++|++||+++|++||+
T Consensus 978 ~~~a~~~i~~g~~~ll~~q~~dGgf-~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~ 1056 (1451)
T 4acq_A 978 KSKAIGYLNTGYQRQLNYKHYDGSY-STFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGC 1056 (1451)
T ss_dssp HHHHHHHHHHHHHHHGGGBCTTSCB-CSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTE
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCe-eeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCc
Confidence 4456678999999999999999998 5553 36789999999999987642 24678999999999999999999
Q ss_pred cccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 029612 86 WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINS 141 (190)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~ 141 (190)
|.+....+++.+.. +..+++..|||+|.||.+++....++ .|++|++||.++
T Consensus 1057 f~~~g~~~~~~m~g---g~~~~~~lTAyvl~aL~~~g~~~~~~-~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1057 FRSSGSLLNNAIKG---GVEDEVTLSAYITIALLEIPLTVTHP-VVRNALFCLESA 1108 (1451)
T ss_dssp ECCCCCCSCGGGCC---SCSCHHHHHHHHHHHHHHTTCCTTCH-HHHHHHHHHHHH
T ss_pred ccccCcccchhhcC---CCCCCccchHHHHHHHHHcCCCCCCH-HHHHHHHHHHHh
Confidence 98654444433322 22456788999999999888754444 788899888865
No 17
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=99.65 E-value=2.8e-15 Score=136.11 Aligned_cols=75 Identities=23% Similarity=0.376 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCcccccc--cchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHhhccCCCcccc
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g--~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
+.+..+.|+.+++-|++.|++|||| +.|+ .+++|.||||+..|..+... ..+...+.+++.||+++|.+||.|.+
T Consensus 363 ~~~a~~~l~~gyqrll~~q~~DGsf-s~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e 440 (767)
T 4fxk_B 363 KDHAVDLIQKGYMRIQQFRKADGSY-AAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD 440 (767)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSCB-BSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCc-ccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchh
Confidence 4556678999999999999999997 4453 35789999999999998652 34678999999999999999999854
No 18
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.63 E-value=3.8e-15 Score=137.48 Aligned_cols=150 Identities=20% Similarity=0.206 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHH-hcccCCCccccccc--------------chhhHHHHHHHHHHhcCCC-----CCcHHHHHHHHHHH
Q 029612 17 KNFIAKATKFIED-IQKSDGSWYGSWGI--------------CFTYAAWFAISGLVAAKKT-----YSNCLAIRKATDFL 76 (190)
Q Consensus 17 ~~~i~~a~~~L~~-~Q~~dGsw~~~~g~--------------~~~~~Ta~al~aL~~~g~~-----~~~~~~i~ra~~~L 76 (190)
++++++|++||.+ .|.+||+|.+.++. .....||+++.+|.++|.. +...+.|++|++||
T Consensus 349 ~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL 428 (915)
T 2hr0_B 349 SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFL 428 (915)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHH
Confidence 5889999999995 99999999765432 2355699999999998652 23567999999999
Q ss_pred HhhccC-CCccccCCC-------------------c-cCCCccCCCCCC-CCcHHHHHHHHHHHHHcCCCCCCcHHHHHH
Q 029612 77 LKIQCE-DGGWGESYR-------------------S-CPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQMERDPTPLHRA 134 (190)
Q Consensus 77 l~~Q~~-DGgw~~~~~-------------------~-~~~~~~~~~~~~-~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a 134 (190)
.+.+.. +++|+.... . .....|+.-.+. ..++..|||+|++|...+.. + .+.+.
T Consensus 429 ~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~--~~~~~ 504 (915)
T 2hr0_B 429 EANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--D--FVPPV 504 (915)
T ss_dssp HHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--T--THHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh--h--hHHHH
Confidence 987665 332311100 0 001112210111 13678999999999998753 2 57889
Q ss_pred HHHHHhcccCCCCCCCCcccccccCceeeccCCccchHHHHHHHHHHHhhcC
Q 029612 135 AKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 186 (190)
Q Consensus 135 ~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~ 186 (190)
++||.++|+.+|+|.+++ .|+++|+||++|..+.+.
T Consensus 505 v~wL~~qq~~~Ggw~STQ----------------dT~~Al~AL~~y~~~~~~ 540 (915)
T 2hr0_B 505 VRWLNEQRYYGGGYGSTQ----------------ATFMVFQALAQYQKDAPD 540 (915)
T ss_dssp HHHHHTCCCSSSSCCSHH----------------HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhcccCCCCccchh----------------hHHHHHHHHHHHHHHcCc
Confidence 999999999999999876 578999999999987655
No 19
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.57 E-value=1.3e-14 Score=121.63 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcc---------cCCCcccccc------------------cchhhHHHHHHHHHHhcCCCCCcHHHHHHH
Q 029612 20 IAKATKFIEDIQK---------SDGSWYGSWG------------------ICFTYAAWFAISGLVAAKKTYSNCLAIRKA 72 (190)
Q Consensus 20 i~~a~~~L~~~Q~---------~dGsw~~~~g------------------~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra 72 (190)
.+++++||++.|. ++|+|.+.-+ .+++..|..+|.+|...|... .....+++
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~-~~id~~~~ 147 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDL-SRVDKEAC 147 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCS-TTSCHHHH
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCccc-chhhHHHH
Confidence 6899999999999 7899864221 145667999999999988643 23445899
Q ss_pred HHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Q 029612 73 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQE 152 (190)
Q Consensus 73 ~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~ 152 (190)
++||.+.|+|||+|.... ..+..++..|-.|+.+|...+... ++ .++++++||+++|+.||||+..+
T Consensus 148 ~~fL~~~Q~~DGSf~g~~-----------~wGe~DirftY~Al~~l~llg~~~-~~-~v~ka~~fL~scQn~DGGfGe~p 214 (377)
T 1n4q_B 148 LAGLRALQLEDGSFCAVP-----------EGSENDMRFVYCASCICYMLNNWS-GM-DMKKAISYIRRSMSYDNGLAQGA 214 (377)
T ss_dssp HHHHHHHBCTTSCBCSST-----------TCCCCBHHHHHHHHHHHHHTTCGG-GS-CHHHHHHHHHHTBCTTSSBBSST
T ss_pred HHHHHHhcCCCCCeeecc-----------CCCcchhHHHHHHHHHHHHhcCCC-hH-HHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999999999997531 134677888877777777776532 22 78999999999999999998765
No 20
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=99.55 E-value=3.7e-16 Score=150.63 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCccccccc--chhhHHHHHHHHHHhcCCC-C-CcHHHHHHHHHHHHh-hccCCCcc
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI--CFTYAAWFAISGLVAAKKT-Y-SNCLAIRKATDFLLK-IQCEDGGW 86 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~--~~~~~Ta~al~aL~~~g~~-~-~~~~~i~ra~~~Ll~-~Q~~DGgw 86 (190)
.+++..+.|+.+++-+++.|++|||| +.|+. +++|.||||+..|..+... . .+...++++++||++ +|++||+|
T Consensus 1024 ~~~ka~~~i~~Gyqr~l~yq~~DGsf-s~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F 1102 (1642)
T 3prx_B 1024 RRTEAVNQIVTGYAQQMVYKKADHSY-AAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAF 1102 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe-ecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcc
Confidence 44566788999999999999999997 55643 6799999999999988652 2 467899999999997 89999999
Q ss_pred ccCCCccCCCccCCCCCCCC------------------------------------------------------------
Q 029612 87 GESYRSCPNKKYIPLDGNRS------------------------------------------------------------ 106 (190)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~s------------------------------------------------------------ 106 (190)
.+.....++.+..+..+.++
T Consensus 1103 ~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~ 1182 (1642)
T 3prx_B 1103 KENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAA 1182 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhc
Confidence 66433222211111101112
Q ss_pred ---------------------------cHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCCCcccccccC
Q 029612 107 ---------------------------NLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFME 159 (190)
Q Consensus 107 ---------------------------~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~ 159 (190)
+++.|||||+|++..+... ...+.++||.++|+..|||.+++
T Consensus 1183 ~~~~~~~l~~l~~~~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~~----~a~~iv~WL~~qr~~~Ggf~STQ------- 1251 (1642)
T 3prx_B 1183 DQLNDDRVLMAASTGRDHWEEYNAHTHNIEGTSYALLALLKMKKFD----QTGPIVRWLTDQNFYGETYGQTQ------- 1251 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCchh----hHHHHHHHHHHhccCCCcccCcH-------
Confidence 3455566666655543221 33456889999888889998877
Q ss_pred ceeeccCCccchHHHHHHHHHHHhhcC
Q 029612 160 NCMLHYPIYRNIFPMWALAEYRSRLLL 186 (190)
Q Consensus 160 ~~~~~~~~~~~~~~l~aL~~~~~~~~~ 186 (190)
.|+++|+||++|..+.+.
T Consensus 1252 ---------dTvvaLqALa~Y~~~~~~ 1269 (1642)
T 3prx_B 1252 ---------ATVMAFQALAEYEIQMPT 1269 (1642)
T ss_dssp ---------------------------
T ss_pred ---------HHHHHHHHHHHHHHhcCc
Confidence 588999999999998765
No 21
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=1.2e-14 Score=138.48 Aligned_cols=146 Identities=16% Similarity=0.234 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHhcccCCCccccccc----------chhhHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHhhccC-CC
Q 029612 17 KNFIAKATKFIEDIQKSDGSWYGSWGI----------CFTYAAWFAISGLVAAKKTY-SNCLAIRKATDFLLKIQCE-DG 84 (190)
Q Consensus 17 ~~~i~~a~~~L~~~Q~~dGsw~~~~g~----------~~~~~Ta~al~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q~~-DG 84 (190)
++.++++++||.+.|++||+|.+.|.. .....|++++.+|.+.|... .....+++|++||.++|+. ++
T Consensus 923 ~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~ 1002 (1325)
T 2pn5_A 923 AAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINN 1002 (1325)
T ss_dssp HHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCC
Confidence 478999999999999999999765432 12446899999999877431 1346899999999998887 88
Q ss_pred ccccCCCcc------------------------C--CCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q 029612 85 GWGESYRSC------------------------P--NKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLL 138 (190)
Q Consensus 85 gw~~~~~~~------------------------~--~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L 138 (190)
+|+....++ . ...|+ ...+++..|||+|++|+..+. ...+.+.++||
T Consensus 1003 ~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w---~~~s~ve~tA~aLlall~~~~----~~~~~~~v~wL 1075 (1325)
T 2pn5_A 1003 AYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFW---NTTNPIETTAYALLSFVMAEK----YTDGIPVMNWL 1075 (1325)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEEC---CSSSHHHHHHHHHHHHHHTTC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccC---CCCCchHHHHHHHHHHhhhcc----chhhHHHHHHH
Confidence 885442100 0 01122 124678899999999998754 23678899999
Q ss_pred HhcccCCCCCCCCcccccccCceeeccCCccchHHHHHHHHHHHhhc
Q 029612 139 INSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLL 185 (190)
Q Consensus 139 ~~~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~ 185 (190)
+++|+.+|+|.+++ .++++|+||++|.....
T Consensus 1076 ~~q~~~~g~w~sTq----------------~T~~aL~AL~~y~~~~~ 1106 (1325)
T 2pn5_A 1076 VNQRYVTGSFPSTQ----------------DTFVGLKALTKMAEKIS 1106 (1325)
T ss_dssp HTTCCTTSSCSSHH----------------HHHHHHHHHHHHHHHHS
T ss_pred HhccCCCCCccchH----------------HHHHHHHHHHHHHHHcC
Confidence 99999999999877 57899999999988654
No 22
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.54 E-value=1.1e-14 Score=121.79 Aligned_cols=137 Identities=14% Similarity=0.125 Sum_probs=92.5
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCcccccccch------h---hHHHHHHHHHHhcCCC------------CCcHHHHH
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICF------T---YAAWFAISGLVAAKKT------------YSNCLAIR 70 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~------~---~~Ta~al~aL~~~g~~------------~~~~~~i~ 70 (190)
..+...+++.+|++||++.|.+||+|..-+..+. + ..|+-+|..|...+.. ....++++
T Consensus 169 ~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~ 248 (408)
T 1r76_A 169 EAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATN 248 (408)
T ss_dssp GCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHH
Confidence 4578899999999999999999999954322111 1 2588888888766541 02468999
Q ss_pred HHHHHHHhhccC-CCccccCCCc-cCCCccCCC-----CCCCCcHHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHhcc
Q 029612 71 KATDFLLKIQCE-DGGWGESYRS-CPNKKYIPL-----DGNRSNLVQTAWAMMSLIHAGQMER-DPTPLHRAAKLLINSQ 142 (190)
Q Consensus 71 ra~~~Ll~~Q~~-DGgw~~~~~~-~~~~~~~~~-----~~~~s~~~~Ta~al~aL~~~~~~~~-~~~~i~~a~~~L~~~Q 142 (190)
|+++||++.|.+ ||.|. .+.. +....+.|. +...-....|+.+|+.|+....... ...+|.+|++||.++|
T Consensus 249 Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q 327 (408)
T 1r76_A 249 AAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSV 327 (408)
T ss_dssp HHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999 99996 3322 111112210 1112245668889888887765320 1137999999999999
Q ss_pred cCCCCCC
Q 029612 143 LEDGDFP 149 (190)
Q Consensus 143 ~~~Ggw~ 149 (190)
++||+|.
T Consensus 328 ~~dg~w~ 334 (408)
T 1r76_A 328 IRDRAWV 334 (408)
T ss_dssp CCC----
T ss_pred cCCCcee
Confidence 9999987
No 23
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.52 E-value=1.1e-13 Score=119.02 Aligned_cols=119 Identities=17% Similarity=0.242 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcccCCCccccc---ccchhhHHHHHHHHHHhcCCCCC--cHH--H--HHHHHHHHHhhccCCCcccc
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSW---GICFTYAAWFAISGLVAAKKTYS--NCL--A--IRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~---g~~~~~~Ta~al~aL~~~g~~~~--~~~--~--i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
...++.++||+++|++||+|.+.- ..+++..|..+|.+|...+.... ..+ . ++++++||.+.|++||+|..
T Consensus 109 ~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g 188 (520)
T 3q7a_B 109 GTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVV 188 (520)
T ss_dssp HHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBS
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEec
Confidence 457889999999999999986532 23567789999999999886420 112 2 67899999999999999964
Q ss_pred CCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCCCC
Q 029612 89 SYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQ 150 (190)
Q Consensus 89 ~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~Ggw~~ 150 (190)
. ..+..++..|-.|+.+|...+.. ++..++++++||+++|+.||||+.
T Consensus 189 ~------------~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 189 C------------EGGEVDVRGTYCLLVVATLLDII--TPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp S------------TTCCBCHHHHHHHHHHHHHHTCC--CHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred C------------CCCCchHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccC
Confidence 2 02466788888888888777763 344899999999999999999988
No 24
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.44 E-value=9.9e-13 Score=121.45 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=97.2
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCcccccc--cchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHh-hccCCCccc
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLK-IQCEDGGWG 87 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g--~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~-~Q~~DGgw~ 87 (190)
.+++..+.|++++++|++.|++||+| +.|+ .+++|.||+|+..|..+... ..+...++++++||.+ .|.+||+|.
T Consensus 293 ~~~~a~~~i~~g~~rll~~Q~~DGsf-s~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~ 371 (915)
T 2hr0_B 293 KRQGALELIKKGYTQQLAFRQPSSAF-AAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQ 371 (915)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCTTTCC-BSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCc-cccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccc
Confidence 34455678999999999999999998 4454 45789999999999988642 2357899999999995 999999997
Q ss_pred cCCCccCCCccCCCCCC-CCcHHHHHHHHHHHHHcCCC---C--CCcHHHHHHHHHHHhcccC
Q 029612 88 ESYRSCPNKKYIPLDGN-RSNLVQTAWAMMSLIHAGQM---E--RDPTPLHRAAKLLINSQLE 144 (190)
Q Consensus 88 ~~~~~~~~~~~~~~~~~-~s~~~~Ta~al~aL~~~~~~---~--~~~~~i~~a~~~L~~~Q~~ 144 (190)
......+..+..+..+. .+++..|||+|.+|.+.+.. + ....+|+++++||.+++..
T Consensus 372 ~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~ 434 (915)
T 2hr0_B 372 EDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN 434 (915)
T ss_dssp CCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred cCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhc
Confidence 65443332221111011 34677899999999998653 1 1124889999999998754
No 25
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.44 E-value=4.3e-13 Score=112.25 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcccCCCcccccc-------------------------------------c--chhhHHHHHHHHHHhc
Q 029612 19 FIAKATKFIEDIQKSDGSWYGSWG-------------------------------------I--CFTYAAWFAISGLVAA 59 (190)
Q Consensus 19 ~i~~a~~~L~~~Q~~dGsw~~~~g-------------------------------------~--~~~~~Ta~al~aL~~~ 59 (190)
..++..+.|+..|.++|+|.-... . .....|+.+|++|...
T Consensus 82 ~A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv 161 (408)
T 1r76_A 82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV 161 (408)
T ss_dssp HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHH
Confidence 468889999999999999952100 0 0123599999999874
Q ss_pred C------CCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCC--------
Q 029612 60 K------KTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQME-------- 125 (190)
Q Consensus 60 g------~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~-------- 125 (190)
. ......+++.|+++||+++|++||||+...... ..|.. .-+-+-..|+.+|..|...+...
T Consensus 162 ~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn--~~y~~--~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~ 237 (408)
T 1r76_A 162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLE--GGYHD--AITYNDDALVHVAELLSDIAAGRDGFGFVPP 237 (408)
T ss_dssp HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCC--CGGGG--SEECGGGHHHHHHHHHHHHHHTCTTCTTSCH
T ss_pred HhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccc--ccccc--CCCcCcHHHHHHHHHHHHHHhccCcccccch
Confidence 2 222457999999999999999999998764432 12221 11112267889887776554310
Q ss_pred ----CCcHHHHHHHHHHHhcccC-CCCC---CCCccccccc
Q 029612 126 ----RDPTPLHRAAKLLINSQLE-DGDF---PQQELTGVFM 158 (190)
Q Consensus 126 ----~~~~~i~~a~~~L~~~Q~~-~Ggw---~~~~~~g~~~ 158 (190)
....+++||++||++.|.+ ||.| ..+++.||+.
T Consensus 238 ~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~ 278 (408)
T 1r76_A 238 AIRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLR 278 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCS
T ss_pred hhhhhHHHHHHHHHHHHHHhhcccCCcccchhcccccccCc
Confidence 1124899999999999999 9965 5667777744
No 26
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=99.42 E-value=4.9e-12 Score=122.89 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=74.6
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCcccccc--cchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHh-hccCCCccc
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLK-IQCEDGGWG 87 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g--~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~-~Q~~DGgw~ 87 (190)
.+++..+.|+.+++-+++.|++||+| +-|+ .+++|.||||+..|.++... ..+...++++++||.+ .|.+||.|.
T Consensus 1040 ~~~~~~~~i~~g~~r~l~~q~~dGsf-s~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~ 1118 (1661)
T 2b39_A 1040 KRQESLELIRKGYTQQLAFRQKSSAY-AAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQ 1118 (1661)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCc-cccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccc
Confidence 34456678999999999999999997 4454 35799999999999987542 2468899999999995 999999996
Q ss_pred cCCCccCCCccCCCCC-CCCcHHHHHHHHHHHHHc
Q 029612 88 ESYRSCPNKKYIPLDG-NRSNLVQTAWAMMSLIHA 121 (190)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~s~~~~Ta~al~aL~~~ 121 (190)
+.....+..+..+... ..+++..|||++++|.+.
T Consensus 1119 ~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~ 1153 (1661)
T 2b39_A 1119 EDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEA 1153 (1661)
T ss_dssp CCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHT
T ss_pred cccceechhhcCCccccccCccccHHHHHHHHHhc
Confidence 5432222211111000 122455566666666554
No 27
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.40 E-value=2.6e-13 Score=110.71 Aligned_cols=132 Identities=19% Similarity=0.169 Sum_probs=91.4
Q ss_pred HHHHHHHhcccCCCcccc------------cccc--hhhHHHHHHHHHHhcCC---CCCcHHHHHHHHHHHHhhccCCCc
Q 029612 23 ATKFIEDIQKSDGSWYGS------------WGIC--FTYAAWFAISGLVAAKK---TYSNCLAIRKATDFLLKIQCEDGG 85 (190)
Q Consensus 23 a~~~L~~~Q~~dGsw~~~------------~g~~--~~~~Ta~al~aL~~~g~---~~~~~~~i~ra~~~Ll~~Q~~DGg 85 (190)
..+.|+..|+++|+|.-. ++.. ....|+.+|++|+.... .....+++.||++||+++|.+|||
T Consensus 36 ~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGG 115 (332)
T 1gxm_A 36 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA 115 (332)
T ss_dssp GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCC
Confidence 378899999999999631 1111 23459999999987532 223579999999999999999999
Q ss_pred cccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCC----C----------CCCcHHHHHHHHHHHhcccCCCC----
Q 029612 86 WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ----M----------ERDPTPLHRAAKLLINSQLEDGD---- 147 (190)
Q Consensus 86 w~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~----~----------~~~~~~i~~a~~~L~~~Q~~~Gg---- 147 (190)
|+...... ..|.. .-+-+-..|+.+|..|...+. . .....+++||++||++.|.++||
T Consensus 116 WpqFdpd~--~~Yl~--~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~ 191 (332)
T 1gxm_A 116 LPQFYPLK--GGYSD--HATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTV 191 (332)
T ss_dssp CBSEESCC--SGGGG--SEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECC
T ss_pred ccccCCCc--ccccc--cCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCe
Confidence 98764431 12221 111122679999988877642 1 11124899999999999998875
Q ss_pred CCCCccccccc
Q 029612 148 FPQQELTGVFM 158 (190)
Q Consensus 148 w~~~~~~g~~~ 158 (190)
|..++..||..
T Consensus 192 Wg~qydygT~~ 202 (332)
T 1gxm_A 192 WCAQHGALDYQ 202 (332)
T ss_dssp CCSEECTTTCC
T ss_pred ecccccccccc
Confidence 56667666643
No 28
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1.5e-12 Score=124.15 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=98.6
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCccccc--ccchhhHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHhhccCCCcccc
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSW--GICFTYAAWFAISGLVAAKKT--YSNCLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~--g~~~~~~Ta~al~aL~~~g~~--~~~~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
+++..+.|++|+++|+++|++||+| +.| +.+++|.|++|+.+|..+... ..+.+.++++++||.+.|++||+|..
T Consensus 867 ~~~~~~~i~~g~~rll~~q~~dGgf-~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~ 945 (1325)
T 2pn5_A 867 IDKATNLLRQGYQNQMRYRQTDGSF-GLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDK 945 (1325)
T ss_dssp HHHHHHHHHHHHHHHGGGBCTTSCB-CSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCe-eccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccc
Confidence 4567788999999999999999998 444 345789999999999987532 13578999999999999999999966
Q ss_pred CCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHhcccC-CCCCC
Q 029612 89 SYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQME-RDPTPLHRAAKLLINSQLE-DGDFP 149 (190)
Q Consensus 89 ~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~-~~~~~i~~a~~~L~~~Q~~-~Ggw~ 149 (190)
.....+..++. +.......|+|+|.+|...+... .....+++|++||.++++. +++|.
T Consensus 946 ~~~~~~~~~~g---~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~ 1005 (1325)
T 2pn5_A 946 AGAEYHKEMQG---GLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYD 1005 (1325)
T ss_dssp CSCCSCHHHHC---CSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHH
T ss_pred cccccChhhcC---cccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHH
Confidence 43322211111 12345778999999998765321 1223789999999998876 67764
No 29
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=99.27 E-value=7.6e-11 Score=114.71 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCcccccc--cchhhHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHh-hccCCCcccc
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSWG--ICFTYAAWFAISGLVAAKKT-YSNCLAIRKATDFLLK-IQCEDGGWGE 88 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g--~~~~~~Ta~al~aL~~~g~~-~~~~~~i~ra~~~Ll~-~Q~~DGgw~~ 88 (190)
+++..+.|+.+++-+++.|++||+| +-|+ .+++|.||||+..|.++... ..+...++++++||.+ +|.+||.|.+
T Consensus 1042 ~~~~~~~i~~g~~r~l~~q~~dGsf-s~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1042 KQKLKKKLKEGMLSIMSYRNADYSY-SVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp HHHHHHHHHHHHHHGGGGBCTTSCB-CSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCc-cccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence 3455678889999999999999997 4453 35799999999999887542 2468899999999998 9999998732
Q ss_pred CCCcc---------------------------------------------------------------------------
Q 029612 89 SYRSC--------------------------------------------------------------------------- 93 (190)
Q Consensus 89 ~~~~~--------------------------------------------------------------------------- 93 (190)
.....
T Consensus 1121 ~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~lA~Al~l~g~ 1200 (1676)
T 3cu7_A 1121 NSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDK 1200 (1676)
T ss_dssp CSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSCT
T ss_pred CccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcCC
Confidence 10000
Q ss_pred C------------------CC-c---cCCCCC------C---C--CcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHh
Q 029612 94 P------------------NK-K---YIPLDG------N---R--SNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLIN 140 (190)
Q Consensus 94 ~------------------~~-~---~~~~~~------~---~--s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~ 140 (190)
. +. . |+..+. + . .++..|||+|++|+..+. ...+.+.++||.+
T Consensus 1201 ~~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~----~~~~~~iv~wL~~ 1276 (1676)
T 3cu7_A 1201 THPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD----INYVNPVIKWLSE 1276 (1676)
T ss_dssp TCHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC----hhHHHHHHHHHHh
Confidence 0 00 0 211000 0 1 145678999999988652 2357788999999
Q ss_pred cccCCCCCCCCcccccccCceeeccCCccchHHHHHHHHHHHhhcC
Q 029612 141 SQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 186 (190)
Q Consensus 141 ~Q~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~ 186 (190)
+|+.+|+|.+++ .|+++|+||++|..+...
T Consensus 1277 qr~~~Gg~~STQ----------------dT~~Al~AL~~y~~~~~~ 1306 (1676)
T 3cu7_A 1277 EQRYGGGFYSTQ----------------DTINAIEGLTEYSLLVKQ 1306 (1676)
T ss_dssp HSCSSSCCSTTT----------------THHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCccccH----------------HHHHHHHHHHHHHHHcCC
Confidence 999999999877 688999999999887654
No 30
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.24 E-value=6.6e-12 Score=102.45 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=83.2
Q ss_pred CCchHHHHHHHHHHHHHHHhcccCCCcccccccch------h---hHHHHHHHHHHhcCC----C----------CCcHH
Q 029612 11 HRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICF------T---YAAWFAISGLVAAKK----T----------YSNCL 67 (190)
Q Consensus 11 ~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~------~---~~Ta~al~aL~~~g~----~----------~~~~~ 67 (190)
...+..++++++|++||++.|.+||+|..-+.... + ..|+-+|..|...+. . ....+
T Consensus 90 ~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (332)
T 1gxm_A 90 GGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKT 169 (332)
T ss_dssp HCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHH
Confidence 34678899999999999999999999964221111 1 258999888887642 1 12468
Q ss_pred HHHHHHHHHHhhccCCCccccCCCccCC-CccCCCCC---C-CCcHHH-HHHHHHHHHHcCCCCCCc---HHHHHHHHHH
Q 029612 68 AIRKATDFLLKIQCEDGGWGESYRSCPN-KKYIPLDG---N-RSNLVQ-TAWAMMSLIHAGQMERDP---TPLHRAAKLL 138 (190)
Q Consensus 68 ~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~-~~~~~~~~---~-~s~~~~-Ta~al~aL~~~~~~~~~~---~~i~~a~~~L 138 (190)
+++||++||++.|.+||||...+...+. ..+.|... . ++-... ++-++.-|+.... ++ .+|++|++||
T Consensus 170 av~Rgid~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~---~~~v~~aI~~Av~WL 246 (332)
T 1gxm_A 170 AVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ---TAEIEQAVRAGVAWF 246 (332)
T ss_dssp HHHHHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHH
Confidence 9999999999999999998654433211 11222100 0 121122 2333333333222 32 3799999999
Q ss_pred Hhccc
Q 029612 139 INSQL 143 (190)
Q Consensus 139 ~~~Q~ 143 (190)
.++|+
T Consensus 247 ~~~q~ 251 (332)
T 1gxm_A 247 NSPRT 251 (332)
T ss_dssp TCTTT
T ss_pred Hhccc
Confidence 99999
No 31
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.22 E-value=9.9e-11 Score=98.15 Aligned_cols=126 Identities=20% Similarity=0.211 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcc---c-CCCccc------------ccccchhhHHHHHHHHHHhcCCCCC-----------cHHHHHHH
Q 029612 20 IAKATKFIEDIQK---S-DGSWYG------------SWGICFTYAAWFAISGLVAAKKTYS-----------NCLAIRKA 72 (190)
Q Consensus 20 i~~a~~~L~~~Q~---~-dGsw~~------------~~g~~~~~~Ta~al~aL~~~g~~~~-----------~~~~i~ra 72 (190)
.++.++||.+.|+ + ||||.. .+|...+..+.+|+..+...+.... ....++++
T Consensus 117 r~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~ 196 (390)
T 3dra_B 117 RKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISL 196 (390)
T ss_dssp HHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHH
Confidence 3577899999998 6 999962 2566677777666666666554310 02347899
Q ss_pred HHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc---------
Q 029612 73 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL--------- 143 (190)
Q Consensus 73 ~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~--------- 143 (190)
++||+++|+.||||+.. | +..++...|-.|+.+|...+... ..+++.++||.++|.
T Consensus 197 ~~~I~~cq~ydGGfg~~----------p--~~EsH~G~TfCalaaL~lL~~~~---~d~~~l~~WL~~RQ~~~~~~~~~~ 261 (390)
T 3dra_B 197 QQFILDRININGGFSST----------I--MDESHLGFTFCAIASLKLLNYPL---EKLKSTKEWLIHRQVDYPENLYPK 261 (390)
T ss_dssp HHHHHTTBCTTSCBCSS----------T--TSCCCHHHHHHHHHHHHHTTCCG---GGCHHHHHHHHTTBCCCCTTTCC-
T ss_pred HHHHHHhcCCCCCcCCC----------C--CcccccchhHHHHHHHHHhCccc---ccHHHHHHHHHHcCcccccccccc
Confidence 99999999999999874 2 56788888888888888877652 256778999999997
Q ss_pred -------------------CCCCCCCCcccccccCcee
Q 029612 144 -------------------EDGDFPQQELTGVFMENCM 162 (190)
Q Consensus 144 -------------------~~Ggw~~~~~~g~~~~~~~ 162 (190)
++|||..++ +..++.||
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~GGFnGR~--nKl~D~CY 297 (390)
T 3dra_B 262 DGNGDGNGNGDNYEYYRNIDIGGFNGRE--NKLSDTCY 297 (390)
T ss_dssp -----------CCTTCCGGGTTSBBSST--TCCBCTHH
T ss_pred ccccccccccccccccccccCCCccCCC--CCccchhH
Confidence 469997665 25677776
No 32
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.12 E-value=2.7e-10 Score=95.16 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCC----CC----CcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHH
Q 029612 49 AWFAISGLVAAKK----TY----SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH 120 (190)
Q Consensus 49 Ta~al~aL~~~g~----~~----~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~ 120 (190)
..+++..|...+. .. .....|+++++||++.|++||||+.. + ...++...|+|++.+|..
T Consensus 65 ~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~dGgf~~~----------~--~~~~~~~lTa~v~~~l~~ 132 (367)
T 1hzf_A 65 TLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAW----------L--SRDSSTWLTAFVLKVLSL 132 (367)
T ss_dssp HHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSS----------T--TSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCCCCeecc----------C--CCCCcHHHHHHHHHHHHH
Confidence 3456666655332 11 12467899999999999999999763 1 345678899999999988
Q ss_pred cCCC-CCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceee-----ccCCccchHHHHHHHHH
Q 029612 121 AGQM-ERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCML-----HYPIYRNIFPMWALAEY 180 (190)
Q Consensus 121 ~~~~-~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~-----~~~~~~~~~~l~aL~~~ 180 (190)
++.. ..+...++++++||.++|++||+|..... .++....- .-..+-|.++|.||.+.
T Consensus 133 a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~--~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~ 196 (367)
T 1hzf_A 133 AQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCP--VLDRSMQGGLVGNDETVALTAFVTIALHHG 196 (367)
T ss_dssp HGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSC--CSCGGGGGGGSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhhccCCCcccccc--cccccccCCCCCCcccccchHHHHHHHHhh
Confidence 7642 23456999999999999999999976531 12111000 01123467888888764
No 33
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=6.6e-10 Score=93.16 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhcccCCCccccc-ccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc----------------
Q 029612 19 FIAKATKFIEDIQKSDGSWYGSW-GICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC---------------- 81 (190)
Q Consensus 19 ~i~~a~~~L~~~Q~~dGsw~~~~-g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~---------------- 81 (190)
.+++.++||+++|+.||+|.... ..+..-.|.++|.+|..++... ..+.+.++||..+|.
T Consensus 192 d~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~~---~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~ 268 (390)
T 3dra_B 192 DLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPL---EKLKSTKEWLIHRQVDYPENLYPKDGNGDGN 268 (390)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCCG---GGCHHHHHHHHTTBCCCCTTTCC--------
T ss_pred cHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCccc---ccHHHHHHHHHHcCccccccccccccccccc
Confidence 37899999999999999986432 3344445888999999988752 467889999999997
Q ss_pred ------------CCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc-cC-CCC
Q 029612 82 ------------EDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQ-LE-DGD 147 (190)
Q Consensus 82 ------------~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q-~~-~Gg 147 (190)
++|||..+ ++...|+..+-|++-+|...+....+....++..+||+++| ++ .||
T Consensus 269 ~~~~~~~~~~~~~~GGFnGR------------~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GG 336 (390)
T 3dra_B 269 GNGDNYEYYRNIDIGGFNGR------------ENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGG 336 (390)
T ss_dssp ----CCTTCCGGGTTSBBSS------------TTCCBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCS
T ss_pred cccccccccccccCCCccCC------------CCCccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCC
Confidence 46777653 24567888888988887776631001112456789999975 54 899
Q ss_pred CCCCcccccccCceeeccCCccchHHHHHHHHHHH
Q 029612 148 FPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRS 182 (190)
Q Consensus 148 w~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~ 182 (190)
|...+ |..| .+|.|.++|.+|+-...
T Consensus 337 f~d~P--g~~p-------D~yHT~~gLagLsl~~~ 362 (390)
T 3dra_B 337 FGRDP--DSTP-------DPMHSYLALASLSLWNH 362 (390)
T ss_dssp BCSST--TSCC-------CHHHHHHHHHHHHHHHH
T ss_pred cCCCC--CCCC-------chHHHHHHHHHHHHcCC
Confidence 98765 2223 45678999999987653
No 34
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=99.04 E-value=4.7e-10 Score=94.32 Aligned_cols=107 Identities=15% Similarity=0.066 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCC---CCcHHHHHHHH----HHHHhhccCCCccccCCCcc
Q 029612 21 AKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKT---YSNCLAIRKAT----DFLLKIQCEDGGWGESYRSC 93 (190)
Q Consensus 21 ~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~---~~~~~~i~ra~----~~Ll~~Q~~DGgw~~~~~~~ 93 (190)
.+.+..|+..|..++.+.+. ..++..||++++||...+.. +...+.|++++ ++|++.|++||+||.
T Consensus 155 ~~~v~~Ll~~~~~~~~~~g~--~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN----- 227 (414)
T 2bb6_A 155 DSVVGKLLYAVEHKPHLLQD--HVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFGN----- 227 (414)
T ss_dssp HHHHHHHHHHHHSSSCSCCT--TTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBSS-----
T ss_pred HHHHHHHHHHhhccCcCCCC--cccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCccc-----
Confidence 34667777777655433222 24577799999999876542 23467788888 777788999999974
Q ss_pred CCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCC-cHHHHHHHHHHHhcccCCCCCC
Q 029612 94 PNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD-PTPLHRAAKLLINSQLEDGDFP 149 (190)
Q Consensus 94 ~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~-~~~i~~a~~~L~~~Q~~~Ggw~ 149 (190)
+..|+.|+.||...+..... +..+.+++++|++ |.+||+|.
T Consensus 228 --------------~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 228 --------------VYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp --------------TTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred --------------hhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence 33599999999998764321 1278889999999 99999996
No 35
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.85 E-value=1.4e-08 Score=84.99 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCC---CC---C----cHHHHHHHHHHHHhhccCCCccc
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKK---TY---S----NCLAIRKATDFLLKIQCEDGGWG 87 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~---~~---~----~~~~i~ra~~~Ll~~Q~~DGgw~ 87 (190)
+.-.+.++-|+..|+.||+++ ++..+|++++||.-.+. .. . ....|++++++|++.|++||+||
T Consensus 130 ~v~~~~v~kLl~~~~~~g~~~------sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG 203 (399)
T 2pmv_A 130 EATLPIAVRFAKTLLANSSPF------NVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG 203 (399)
T ss_dssp HHHHHHHHHHHHHHHHCCSCC------CHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS
T ss_pred CCCHHHHHHHHHHHHccCCcc------cchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 445667777888888887542 46678999999876544 21 1 25778888999999999999996
Q ss_pred cCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHhcccCCCCCC
Q 029612 88 ESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMER-DPTPLHRAAKLLINSQLEDGDFP 149 (190)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~-~~~~i~~a~~~L~~~Q~~~Ggw~ 149 (190)
. +..|+.|+.||...+.... .. .+.++++||++ |..+|+|.
T Consensus 204 n-------------------~yST~LA~QAL~~~~~~~~~~W-~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 204 D-------------------IYSTGLAMQALSVTPEPSKKEW-NCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp S-------------------HHHHHHHHHHHHHCSSCCSSCC-CHHHHHHHHHH-HHTTTTTC
T ss_pred c-------------------cccHHHHHHHHHhcCCCccccc-cHHHHHHHHHH-HhhCCCcC
Confidence 3 6789999999999976422 22 68899999999 89999996
No 36
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.63 E-value=9.2e-08 Score=92.05 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCC
Q 029612 67 LAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM-ERDPTPLHRAAKLLINSQLED 145 (190)
Q Consensus 67 ~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~-~~~~~~i~~a~~~L~~~Q~~~ 145 (190)
..|+++++||+++|++||||+...... + ...++...|||++..|..+... ..++..+++|++||.++|++|
T Consensus 983 ~~i~~g~~~ll~~q~~dGgf~~f~~~~------~--~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~d 1054 (1451)
T 4acq_A 983 GYLNTGYQRQLNYKHYDGSYSTFGERY------G--RNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDN 1054 (1451)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSTTGG------G--CCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETT
T ss_pred HHHHHHHHHHHhhcCCCCCeeeccCCC------C--CCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccC
Confidence 347899999999999999998641100 0 1457889999999999987643 235569999999999999999
Q ss_pred CCCCCCcccccccCcee--eccCCccchHHHHHHHHHH
Q 029612 146 GDFPQQELTGVFMENCM--LHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 146 Ggw~~~~~~g~~~~~~~--~~~~~~~~~~~l~aL~~~~ 181 (190)
|+|...... ++.... ..-..+-+.++|.||.+..
T Consensus 1055 G~f~~~g~~--~~~~m~gg~~~~~~lTAyvl~aL~~~g 1090 (1451)
T 4acq_A 1055 GCFRSSGSL--LNNAIKGGVEDEVTLSAYITIALLEIP 1090 (1451)
T ss_dssp TEECCCCCC--SCGGGCCSCSCHHHHHHHHHHHHHHTT
T ss_pred CcccccCcc--cchhhcCCCCCCccchHHHHHHHHHcC
Confidence 999743210 111000 0112234778888887653
No 37
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.52 E-value=2.5e-07 Score=77.81 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHhhccCCCccccCCCc
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSN-CLAIRKATDFLLKIQCEDGGWGESYRS 92 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~-~~~i~ra~~~Ll~~Q~~DGgw~~~~~~ 92 (190)
..++.+++..+++|++.|++||+| | .++.|++||.||...+..+.. .....++++||++ |.+||+|..
T Consensus 202 ~~i~~al~~l~~~l~~~Q~~dG~F----G--N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~n---- 270 (414)
T 2bb6_A 202 NRINLALKRVQEKILKAQTPEGYF----G--NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQN---- 270 (414)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCB----S--STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCCS----
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCc----c--chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCCC----
Confidence 334455555558888899999998 3 366799999999999876421 1478899999999 999999852
Q ss_pred cCCCccCCCCCCCCcHHHHHHHHHHHHHcC
Q 029612 93 CPNKKYIPLDGNRSNLVQTAWAMMSLIHAG 122 (190)
Q Consensus 93 ~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~ 122 (190)
+..|+-+|.||....
T Consensus 271 ---------------p~ataQ~lpaL~gkt 285 (414)
T 2bb6_A 271 ---------------PLMISQLLPVLNQKS 285 (414)
T ss_dssp ---------------HHHHHHHHHHTTTCC
T ss_pred ---------------hHHHHHHHHHhcCCC
Confidence 457889999987543
No 38
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.43 E-value=3.8e-07 Score=76.32 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=69.3
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHhhccCCCccccCCC
Q 029612 13 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCL-AIRKATDFLLKIQCEDGGWGESYR 91 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~-~i~ra~~~Ll~~Q~~DGgw~~~~~ 91 (190)
+..+..+|++.+++|++.|++||+| | ..+.|++|+.||...+..+ ..+ ...++++||++ |.+||+|+.
T Consensus 178 ~~~i~~ai~~~~~~l~~~q~~dG~f----G--n~yST~LA~QAL~~~~~~~-~~~W~c~~al~~l~~-q~~~G~F~n--- 246 (399)
T 2pmv_A 178 RSLFGQVLKDIVEKISMKIKDNGII----G--DIYSTGLAMQALSVTPEPS-KKEWNCKKTTDMILN-EIKQGKFHN--- 246 (399)
T ss_dssp HHHHHHHHHHHHHHHTTSBCTTSCB----S--SHHHHHHHHHHHHHCSSCC-SSCCCHHHHHHHHHH-HHTTTTTCS---
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcc----c--ccccHHHHHHHHHhcCCCc-cccccHHHHHHHHHH-HhhCCCcCC---
Confidence 4457899999999999999999998 2 4788999999999998753 334 78899999999 999999852
Q ss_pred ccCCCccCCCCCCCCcHHHHHHHHHHHHHcCC
Q 029612 92 SCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ 123 (190)
Q Consensus 92 ~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~ 123 (190)
+..|+-+|-+|...+.
T Consensus 247 ----------------p~~taQilPaL~~kty 262 (399)
T 2pmv_A 247 ----------------PMSIAQILPSLKGKTY 262 (399)
T ss_dssp ----------------HHHHHHHHHHHTTCCG
T ss_pred ----------------HHHHHHHHHHhcCCCc
Confidence 5678888888866543
No 39
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.27 E-value=3.4e-06 Score=76.48 Aligned_cols=120 Identities=18% Similarity=0.119 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCC----CC----cHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHH
Q 029612 48 AAWFAISGLVAAKKT----YS----NCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLI 119 (190)
Q Consensus 48 ~Ta~al~aL~~~g~~----~~----~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~ 119 (190)
-+.+++..|...+.. +. ....++++++-|++.|++||||+.. + +.+++...|||++-.|.
T Consensus 341 p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w----------~--~~~~s~wLTAyV~~~l~ 408 (767)
T 4fxk_B 341 PTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAW----------L--SRDSSTWLTAFVLKVLS 408 (767)
T ss_dssp HHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSS----------S--SSCBCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC----------C--CCCCCchhHHHHHHHHH
Confidence 355666667665431 11 1244788899999999999999863 2 45688999999999999
Q ss_pred HcCCC-CCCcHHHHHHHHHHHhcccCCCCCCCCcccccccCceee-----ccCCccchHHHHHHHHHH
Q 029612 120 HAGQM-ERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCML-----HYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 120 ~~~~~-~~~~~~i~~a~~~L~~~Q~~~Ggw~~~~~~g~~~~~~~~-----~~~~~~~~~~l~aL~~~~ 181 (190)
.+... ..++..+.++++||+++|.+||.|..... .+++...- .....-+.|++.||.+..
T Consensus 409 ~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~--~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~ 474 (767)
T 4fxk_B 409 LAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCP--VLDRSMQGGLVGNDETVALTAFVTIALHHGL 474 (767)
T ss_dssp HTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSC--SCCCCCCSSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCcchHHHHHHHHHHHHhhhhcccchhcch--hcchhhcCCcCCCccchhHHHHHHHHHHhcC
Confidence 98654 34677899999999999999999975421 12211110 111122567888887654
No 40
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=98.01 E-value=1.5e-05 Score=72.65 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHhcc---cCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCC
Q 029612 14 KEVKNFIAKATKFIEDIQK---SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESY 90 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~---~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~ 90 (190)
....+.+++-++-++...+ .||.+ +. -..++|.||+|. +.-.-... ..+.-.++++||++.|.+||+||...
T Consensus 50 ~~~~~~~~~Lie~VK~~l~~~~~~g~~-g~-~S~S~YDTAWVA--mvp~~~~~-~~p~Fp~~~~wil~nQ~~DGsWg~~~ 124 (817)
T 3sdr_A 50 SSYRERAEVLVSEIKAMLNPAITGDGE-SM-ITPSAYDTAWVA--RVPAIDGS-ARPQFPQTVDWILKNQLKDGSWGIQS 124 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCC-CC-CCCCHHHHHHHH--TCBCTTSC-SSBSSHHHHHHHHHCCCTTSCCSCTT
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCCC-cc-cccCHHHhhHHh--eeecCCCC-CCCCchHHHHHHHHccCCCCCCCCCC
Confidence 3344455555555555433 56622 22 235689999953 33211110 12345689999999999999998531
Q ss_pred CccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc
Q 029612 91 RSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL 143 (190)
Q Consensus 91 ~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~ 143 (190)
. ......+..|.-+++||..-+.. +..|+||+.||.++-.
T Consensus 125 ~----------~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl~ 164 (817)
T 3sdr_A 125 H----------FLLSDRLLATLSCVLVLLKWNVG---DLQVEQGIEFIKSNLE 164 (817)
T ss_dssp C----------CCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHT
T ss_pred C----------cchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHH
Confidence 0 00122467899999999987542 3489999999998654
No 41
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.96 E-value=3.6e-05 Score=75.20 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHh-cccC
Q 029612 67 LAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM-ERDPTPLHRAAKLLIN-SQLE 144 (190)
Q Consensus 67 ~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~-~~~~~~i~~a~~~L~~-~Q~~ 144 (190)
..|+.+++-+++.|++||||+.. + +..++...|||++..|..+... ..++..+.++++||.+ +|++
T Consensus 1046 ~~i~~g~~r~l~~q~~dGsfs~w----------~--~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~ 1113 (1661)
T 2b39_A 1046 ELIRKGYTQQLAFRQKSSAYAAF----------Q--YRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKP 1113 (1661)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSS----------T--TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCT
T ss_pred HHHHHHHHHHHHhhcCCCCcccc----------C--CCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCC
Confidence 45667888899999999999863 2 3467899999999999888653 3466789999999995 9999
Q ss_pred CCCCCCC
Q 029612 145 DGDFPQQ 151 (190)
Q Consensus 145 ~Ggw~~~ 151 (190)
+|.|...
T Consensus 1114 ~g~f~~~ 1120 (1661)
T 2b39_A 1114 DGIFQED 1120 (1661)
T ss_dssp TSCBCCC
T ss_pred CCccccc
Confidence 9999653
No 42
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.86 E-value=4e-05 Score=69.51 Aligned_cols=106 Identities=15% Similarity=0.230 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhcc--cCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccC
Q 029612 17 KNFIAKATKFIEDIQK--SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCP 94 (190)
Q Consensus 17 ~~~i~~a~~~L~~~Q~--~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~ 94 (190)
.+.++..++-|++.-. .+|. -..++|.||+|.+ .-.-.. ...+.-.++++||++.|.+||+||....
T Consensus 30 ~~~~~~~~~~i~~~~~~~~~g~-----~S~S~YDTAWVam--vp~~~~-~~~p~Fp~~~~wil~nQ~~DGsWg~~~~--- 98 (785)
T 3s9v_A 30 EKRIETLISEIKNMFRCMGYGE-----TNPSAYDTAWVAR--IPAVDG-SDNPHFPETVEWILQNQLKDGSWGEGFY--- 98 (785)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCC-----CCCCHHHHHHHTT--SBCTTS-CSSBSSHHHHHHHHHCCCTTSCCSCSSS---
T ss_pred hHHHHHHHHHHHHHhhcCCCCc-----ccCcHHHhhHHhc--cccCCC-CCCCCchHHHHHHHHccCCCCCCCCCCC---
Confidence 3455556666655443 3443 2346899999533 221111 0123456899999999999999986310
Q ss_pred CCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc
Q 029612 95 NKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQL 143 (190)
Q Consensus 95 ~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~ 143 (190)
. .....+..|.-+++||..-+.. +..|+||+.||.++-.
T Consensus 99 ----~---~~~d~l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl~ 137 (785)
T 3s9v_A 99 ----F---LAYDRILATLACIITLTLWRTG---ETQVQKGIEFFRTQAG 137 (785)
T ss_dssp ----C---CHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHT
T ss_pred ----C---chHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHHH
Confidence 0 0112377899999999987542 3489999999998653
No 43
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.84 E-value=2.8e-05 Score=70.30 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhccc--CCCcccccccchhhHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHhhccCCCccccCCCcc
Q 029612 18 NFIAKATKFIEDIQKS--DGSWYGSWGICFTYAAWFAISGLVAAK--KTYSNCLAIRKATDFLLKIQCEDGGWGESYRSC 93 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~--dGsw~~~~g~~~~~~Ta~al~aL~~~g--~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~ 93 (190)
..++..++-|++...+ +|. -..++|.||+|.+ .-.- .. ...+.-.++++||++.|.+||+||....
T Consensus 8 ~~~~~~~~~i~~~~~~~~~g~-----~S~S~YDTAWVam--vp~~~~~~-~~~p~Fp~~~~wil~nQ~~DGsWg~~~~-- 77 (764)
T 3p5p_A 8 ERADELVVKIKDMFNALGDGD-----ISPSAYDTAWVAR--LATISSDG-SEKPRFPQALNWVFNNQLQDGSWGIESH-- 77 (764)
T ss_dssp HHHHHHHHHHHHHHHTCSSCC-----CCCCHHHHHHHHH--CEEECTTS-CEEESCHHHHHHHHHCCCTTSCCSCTTS--
T ss_pred HHHHHHHHHHHHHHhcCCCCc-----ccCcHHHHHHHHh--CccccCCC-CCCCCChHHHHHHHHccCCCCCCCCCCC--
Confidence 4455556666544332 443 2346899999533 3221 11 1233556889999999999999985310
Q ss_pred CCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Q 029612 94 PNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQ 142 (190)
Q Consensus 94 ~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q 142 (190)
. .....+..|.-+++||..-+.. +..|+||+.||.++-
T Consensus 78 -----~---~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 78 -----F---SLCDRLLNTTNSVIALSVWKTG---HSQVQQGAEFIAENL 115 (764)
T ss_dssp -----C---CHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred -----c---chHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 0 0122467899999999986542 348999999999865
No 44
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=97.78 E-value=5.8e-05 Score=67.82 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=56.5
Q ss_pred chhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCC
Q 029612 44 CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ 123 (190)
Q Consensus 44 ~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~ 123 (190)
.++|.||+| |+.-.- . ..+.-.++++||++.|.+||+||.... + .....+..|.-+++||..-+.
T Consensus 32 ~S~YDTAWV--Amvp~~--~-~~p~Fp~~~~wil~nQ~~DGsWG~~~~------~----~~~D~ll~TLAcvlAL~~w~~ 96 (727)
T 3pya_A 32 ISAYDTAWV--ALIDAG--D-KTPAFPSAVKWIAENQLSDGSWGDAYL------F----SYHDRLINTLACVVALRSWNL 96 (727)
T ss_dssp CCHHHHHHH--HTCBCS--S-SSBSCHHHHHHHHHTCCTTSCCSCSSS------C----CHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHhHHH--hhccCC--C-CCCCCHHHHHHHHhcCCCCCCCCCCCC------c----chhhHHHHHHHHHHHHHHccC
Confidence 468999995 333221 1 123356889999999999999985310 0 001246789999999998654
Q ss_pred CCCCcHHHHHHHHHHHhccc
Q 029612 124 MERDPTPLHRAAKLLINSQL 143 (190)
Q Consensus 124 ~~~~~~~i~~a~~~L~~~Q~ 143 (190)
. +..|+||+.||.++-.
T Consensus 97 ~---~~~i~rGl~fl~~nl~ 113 (727)
T 3pya_A 97 F---PHQCNKGITFFRENIG 113 (727)
T ss_dssp C---HHHHHHHHHHHHHHGG
T ss_pred C---HHHHHHHHHHHHHHHH
Confidence 2 3489999999998653
No 45
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.77 E-value=3.4e-06 Score=82.02 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCC-C-CCcHHHHHHHHHHHh-ccc
Q 029612 67 LAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM-E-RDPTPLHRAAKLLIN-SQL 143 (190)
Q Consensus 67 ~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~-~-~~~~~i~~a~~~L~~-~Q~ 143 (190)
..|+++++-+++.|++||||+.. + +.+++...|||++-.|..+... . .|+..+.++++||++ +|+
T Consensus 1030 ~~i~~Gyqr~l~yq~~DGsfs~w----------~--~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~ 1097 (1642)
T 3prx_B 1030 NQIVTGYAQQMVYKKADHSYAAF----------T--NRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQ 1097 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCCeecC----------C--CCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccC
Confidence 46778888999999999999864 2 3457788999999999887653 2 456689999999998 899
Q ss_pred CCCCCCCCcccccccCcee-----eccCCccchHHHHHHHHHHH
Q 029612 144 EDGDFPQQELTGVFMENCM-----LHYPIYRNIFPMWALAEYRS 182 (190)
Q Consensus 144 ~~Ggw~~~~~~g~~~~~~~-----~~~~~~~~~~~l~aL~~~~~ 182 (190)
+||.|..... .+++... ......-|.|++.||.+...
T Consensus 1098 ~dG~F~e~~~--v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~ 1139 (1642)
T 3prx_B 1098 PDGAFKENAP--VLSGTMQGGIQGAEEEVYLTAFILVALLESKT 1139 (1642)
T ss_dssp --------------------------------------------
T ss_pred CCCccccccc--ccchhccCCccCCCCcccchHHHHHHHHhccc
Confidence 9999976531 1222211 01233447889999988754
No 46
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.57 E-value=0.00015 Score=70.99 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHh-cccCC
Q 029612 68 AIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM-ERDPTPLHRAAKLLIN-SQLED 145 (190)
Q Consensus 68 ~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~-~~~~~~i~~a~~~L~~-~Q~~~ 145 (190)
.++.+++-+++.|++||||+.. + +..++...|||++..|..+... ..++..+.++++||.+ +|+++
T Consensus 1048 ~i~~g~~r~l~~q~~dGsfs~w----------~--~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~ 1115 (1676)
T 3cu7_A 1048 KLKEGMLSIMSYRNADYSYSVW----------K--GGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDN 1115 (1676)
T ss_dssp HHHHHHHHGGGGBCTTSCBCSS----------S--SSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTT
T ss_pred HHHHHHHHHhhccCCCCCcccc----------C--CCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCC
Confidence 4555666778899999999863 2 4567899999999999887543 3466689999999999 99999
Q ss_pred CCCCCC
Q 029612 146 GDFPQQ 151 (190)
Q Consensus 146 Ggw~~~ 151 (190)
|.|...
T Consensus 1116 g~f~~~ 1121 (1676)
T 3cu7_A 1116 GSFKEN 1121 (1676)
T ss_dssp SCBCCC
T ss_pred CcccCC
Confidence 998653
No 47
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=96.96 E-value=0.0086 Score=49.93 Aligned_cols=157 Identities=13% Similarity=0.174 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcc-cCCCcccccc-------cchhh--HHHHHHHHHHhcC------CCC----CcHHHHHHHHHHHH
Q 029612 18 NFIAKATKFIEDIQK-SDGSWYGSWG-------ICFTY--AAWFAISGLVAAK------KTY----SNCLAIRKATDFLL 77 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~-~dGsw~~~~g-------~~~~~--~Ta~al~aL~~~g------~~~----~~~~~i~ra~~~Ll 77 (190)
.+++....+....++ ++|.|...|. ..+.| ..++++.+|...= ... ...+..++.+++|+
T Consensus 194 ~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~ 273 (382)
T 3pmm_A 194 EATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALA 273 (382)
T ss_dssp HHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHH
Confidence 344444444555554 6787754331 12233 3566666665321 111 12356778899999
Q ss_pred hhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHc---CCCCC-CcHHHHHHHHHHHhcccCCCCCCCCcc
Q 029612 78 KIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHA---GQMER-DPTPLHRAAKLLINSQLEDGDFPQQEL 153 (190)
Q Consensus 78 ~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~---~~~~~-~~~~i~~a~~~L~~~Q~~~Ggw~~~~~ 153 (190)
+.|.+||-|..... . | ....+.+.||....||+.. |..+. -..++.|+++-|+++-++||.....+.
T Consensus 274 ~~q~~~G~W~~~~d---~----~--~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v~~ 344 (382)
T 3pmm_A 274 ECQDDSGLWHTLLD---D----P--HSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQTSF 344 (382)
T ss_dssp HHCCTTSCEESBTT---C----T--TSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCSCBC
T ss_pred HcCCCCCChhhccC---C----C--CCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeCeec
Confidence 99999999974311 0 1 2234566676666665543 33221 123788999999999889997654432
Q ss_pred -cccccCce-eecc----CCccchHHHHHHHHHHHh
Q 029612 154 -TGVFMENC-MLHY----PIYRNIFPMWALAEYRSR 183 (190)
Q Consensus 154 -~g~~~~~~-~~~~----~~~~~~~~l~aL~~~~~~ 183 (190)
+|..+..- |... .+|-...+|+|++++.+.
T Consensus 345 gt~~g~~~~~Y~~~p~~~~~~G~~~~lla~~e~~~~ 380 (382)
T 3pmm_A 345 GTGMGSDLDFYRQIPLTSMPYGQAMAILCLTEYLRK 380 (382)
T ss_dssp CCCCCSSHHHHHTCCBCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCChhhhhcccCCCCCccHHHHHHHHHHHHHh
Confidence 11121111 2111 356788999999998764
No 48
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.73 E-value=0.0023 Score=57.57 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcccCCCcccccccc---hhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q 029612 20 IAKATKFIEDIQKSDGSWYGSWGIC---FTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 20 i~~a~~~L~~~Q~~dGsw~~~~g~~---~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 79 (190)
--+.++||+++|.+||||...-+.. ..-.|..+|.||...+.. ...|+||+.||.+.
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fl~~n 111 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF---PHQCNKGITFFREN 111 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHH
Confidence 5678999999999999995421111 234588889999887654 47999999999753
No 49
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.67 E-value=0.0024 Score=57.80 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcccCCCcccccccc---hhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q 029612 19 FIAKATKFIEDIQKSDGSWYGSWGIC---FTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 19 ~i~~a~~~L~~~Q~~dGsw~~~~g~~---~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 79 (190)
.--+.++||+++|.+||||...-+.. ..-.|..+|.||...+.. .+.|+|++.||.+.
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG---HSQVQQGAEFIAEN 114 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHH
Confidence 35578999999999999995321111 233588889999887754 47999999999654
No 50
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.66 E-value=0.0022 Score=58.25 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcccCCCccccccc---chhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGI---CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~---~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 79 (190)
+..-+.++||+++|.+||||...-.. ...-.|..+|.||...+.. .+.|+|++.||.+.
T Consensus 74 p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 74 PHFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG---ETQVQKGIEFFRTQ 135 (785)
T ss_dssp BSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHH
Confidence 34567899999999999999532111 1134588889999887654 47999999999653
No 51
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.64 E-value=0.0026 Score=58.02 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcccCCCccccccc---chhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGI---CFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~---~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 79 (190)
+..-+.++||+++|.+||||...-+. ...-.|..+|.||...+.. .+.|+|++.||.+.
T Consensus 101 p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 101 PQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG---DLQVEQGIEFIKSN 162 (817)
T ss_dssp BSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHH
Confidence 33467899999999999999542111 1233588889999987754 47999999999754
No 52
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=96.51 E-value=0.031 Score=50.02 Aligned_cols=127 Identities=10% Similarity=0.154 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhccc--CCCcccc--------------cccch--hhHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 029612 15 EVKNFIAKATKFIEDIQKS--DGSWYGS--------------WGICF--TYAAWFAISGLVAAKKTYSNCLAIRKATDFL 76 (190)
Q Consensus 15 ~~~~~i~~a~~~L~~~Q~~--dGsw~~~--------------~g~~~--~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~L 76 (190)
...+.+.+++.-|+..+.+ .|.+... |+-.+ +.+.++++++|..+|. .+..++.++||
T Consensus 293 ~~~~~~~rs~~~Lk~l~~~~~~G~iiAs~t~~~~e~~~~~~~~dY~~~W~RD~~~~~~al~~~G~----~~~a~~~l~~l 368 (684)
T 1lf6_A 293 KANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGD----VDSANRSLDYL 368 (684)
T ss_dssp TCCHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCccEEeecCCCCccccCCCCCCCCEEEeccHHHHHHHHHHHcCC----HHHHHHHHHHH
Confidence 3445677777777766653 5654211 11112 2357889999998885 36788999999
Q ss_pred HhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHH-HHHHHHHHHhccc--CCCCCCCC
Q 029612 77 LKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTP-LHRAAKLLINSQL--EDGDFPQQ 151 (190)
Q Consensus 77 l~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~-i~~a~~~L~~~Q~--~~Ggw~~~ 151 (190)
.+.|.++|+|-........+.| ...-.+.|+..|+++......+.-+ . ++++++|+.+.-. ..|-|...
T Consensus 369 ~~~q~~~G~~~~~~~~~G~p~w-----~~~Q~D~~g~~l~~~~~~~~~g~~~-~~v~~al~~i~~~~~~~~~g~WE~~ 440 (684)
T 1lf6_A 369 AKVVKDNGMIPQNTWISGKPYW-----TGIQLDEQADPIILSYRLKRYDLYD-SLVKPLADFIIKIGPKTGQERWEEI 440 (684)
T ss_dssp HHHHHHHSSCCSCBCTTSCBCC-----CCCCHHHHHHHHHHHHHTTCGGGTT-TTHHHHHHHHHHHCSSBSSCTTSSC
T ss_pred HhhcCCCCCcccceeCCCCccc-----CCccccchHHHHHHHHHHHHcCchH-HHHHHHHHHHHHhCCCCCccccccc
Confidence 9999999987433221111111 1245778888888776554332223 6 9999999999754 24667654
No 53
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=96.27 E-value=0.072 Score=44.02 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCC-C-------CcHHHHHHHHHHHHhhccC-CCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHH
Q 029612 48 AAWFAISGLVAAKKT-Y-------SNCLAIRKATDFLLKIQCE-DGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSL 118 (190)
Q Consensus 48 ~Ta~al~aL~~~g~~-~-------~~~~~i~ra~~~Ll~~Q~~-DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL 118 (190)
..++++.+|...-.. + ...+..++.+++|++.|.| ||-|..-.. . +.. ++...+.+.||....+|
T Consensus 214 g~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld-~--~~~---~~~~~EsSatA~~ay~l 287 (373)
T 1nc5_A 214 SIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVD-K--GDR---SDNWLESSGSCLYMYAI 287 (373)
T ss_dssp HHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTT-C--TTS---TTCCBCHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecC-C--CCC---CCCCccccHHHHHHHHH
Confidence 456777777654221 1 1235567889999999997 999873211 1 100 12335566676666666
Q ss_pred HHc---CCCCC-CcHHHHHHHHHHHhc---ccCCCCC--CCCcccccccCce--eecc-----CCccchHHHHHHHHHHH
Q 029612 119 IHA---GQMER-DPTPLHRAAKLLINS---QLEDGDF--PQQELTGVFMENC--MLHY-----PIYRNIFPMWALAEYRS 182 (190)
Q Consensus 119 ~~~---~~~~~-~~~~i~~a~~~L~~~---Q~~~Ggw--~~~~~~g~~~~~~--~~~~-----~~~~~~~~l~aL~~~~~ 182 (190)
+.. +..+. -..++.|+.+.|+++ .++||.- ...+..| -+... |+.. .++....+|+|++++.+
T Consensus 288 ~~g~~~g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~l~~~~~~~~~-~~~~~~yY~~~~~~~~d~~G~g~~lla~~e~~~ 366 (373)
T 1nc5_A 288 AKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGT-SAGFYDYYVSRERSTNDLHGAGAFILAMTELEP 366 (373)
T ss_dssp HHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEECSC-CSCCHHHHHTSCEESSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcHHHHHHHHHHHHHHHHhceeECCCCCEEecceEEeC-cCCCchhhhcccCCCCCcchHHHHHHHHHHHHH
Confidence 543 43221 124789999999884 4678843 3322222 11111 2222 24466789999999877
Q ss_pred hh
Q 029612 183 RL 184 (190)
Q Consensus 183 ~~ 184 (190)
.+
T Consensus 367 ~~ 368 (373)
T 1nc5_A 367 LF 368 (373)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 54
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=95.74 E-value=0.33 Score=45.44 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHHHHhccc--CCCc--------ccc------cc-cch--hhHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 029612 13 TKEVKNFIAKATKFIEDIQKS--DGSW--------YGS------WG-ICF--TYAAWFAISGLVAAKKTYSNCLAIRKAT 73 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~--dGsw--------~~~------~g-~~~--~~~Ta~al~aL~~~g~~~~~~~~i~ra~ 73 (190)
.....+.+.+++.=|+..+.+ .|.. +.. |+ -.+ +..+++++.+|..+|.. +..++.+
T Consensus 279 ~~~~~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~~----e~A~~~l 354 (1020)
T 1ulv_A 279 TGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDE----EAAARGV 354 (1020)
T ss_dssp CHHHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCH----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCCH----HHHHHHH
Confidence 445667777777777766654 2543 211 11 112 34689999999988853 6788999
Q ss_pred HHHHhhc-cCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCC-cH-HHHHHHHHHHhccc--CCCCC
Q 029612 74 DFLLKIQ-CEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD-PT-PLHRAAKLLINSQL--EDGDF 148 (190)
Q Consensus 74 ~~Ll~~Q-~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~-~~-~i~~a~~~L~~~Q~--~~Ggw 148 (190)
+||.+.| +++|.|-..+.......|. ....+.|+..|+++......+.+ -. .++++++|+.+.-. ..|-|
T Consensus 355 ~~L~~~Q~~~~G~~~~~y~i~G~~~w~-----~~Q~D~~g~~l~~~~~~~~~d~~~w~~~v~~al~~i~~~g~~~~~~~W 429 (1020)
T 1ulv_A 355 EWLFTYQQQPDGHFPQTSRVDGTIGQN-----GIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERW 429 (1020)
T ss_dssp HHHHHHTCCTTSCCCSCBCTTSCBCCC-----CCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTT
T ss_pred HHHHHHhcCCCCCeeeEEecCCCcCCC-----CccCccchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCChhhh
Confidence 9999999 8999885433222111121 23457888988888776543211 12 68899999999753 23556
Q ss_pred CCC
Q 029612 149 PQQ 151 (190)
Q Consensus 149 ~~~ 151 (190)
...
T Consensus 430 Ee~ 432 (1020)
T 1ulv_A 430 EET 432 (1020)
T ss_dssp SSC
T ss_pred ccc
Confidence 654
No 55
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=95.06 E-value=0.31 Score=40.45 Aligned_cols=109 Identities=12% Similarity=0.007 Sum_probs=67.9
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCccccc--ccc--hhhHHHHHHHHHHh---cCC-CCCcHHHHHHHHHHHHhhccCC
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSW--GIC--FTYAAWFAISGLVA---AKK-TYSNCLAIRKATDFLLKIQCED 83 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~--g~~--~~~~Ta~al~aL~~---~g~-~~~~~~~i~ra~~~Ll~~Q~~D 83 (190)
.++++.+.+++.++.|++.|.+||.|.-.. +.+ .+.+||+...+|.. .|. .....+.++|+++.|+++-++|
T Consensus 257 ~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~d 336 (382)
T 3pmm_A 257 VRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQ 336 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTT
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCC
Confidence 456788999999999999999999995321 112 23356666666544 333 1235789999999999999999
Q ss_pred CccccCCCccCCC----ccCCCCCCCCcHHHHHHHHHHHHHc
Q 029612 84 GGWGESYRSCPNK----KYIPLDGNRSNLVQTAWAMMSLIHA 121 (190)
Q Consensus 84 Ggw~~~~~~~~~~----~~~~~~~~~s~~~~Ta~al~aL~~~ 121 (190)
|..+.......-+ .|...+. .+++.-.|.+|+|+.+.
T Consensus 337 G~l~~v~~gt~~g~~~~~Y~~~p~-~~~~~G~~~~lla~~e~ 377 (382)
T 3pmm_A 337 GELLQTSFGTGMGSDLDFYRQIPL-TSMPYGQAMAILCLTEY 377 (382)
T ss_dssp SCBCSCBCCCCCCSSHHHHHTCCB-CCCHHHHHHHHHHHHHH
T ss_pred CCEeCeecCCCCCCChhhhhcccC-CCCCccHHHHHHHHHHH
Confidence 9654321110000 0111111 22466677788887664
No 56
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=94.76 E-value=0.18 Score=41.37 Aligned_cols=126 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred HHHHHHHHHH-HHhcccCCCccccccc--------chhhHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHhh-ccCC
Q 029612 18 NFIAKATKFI-EDIQKSDGSWYGSWGI--------CFTYAAWFAISGLVAAKK----TYSNCLAIRKATDFLLKI-QCED 83 (190)
Q Consensus 18 ~~i~~a~~~L-~~~Q~~dGsw~~~~g~--------~~~~~Ta~al~aL~~~g~----~~~~~~~i~ra~~~Ll~~-Q~~D 83 (190)
..+++.+.|. ...+.+.|+|+..... -..+..+..|.+++.+.. .+...+.++++++||++. +.++
T Consensus 15 ~l~~~~l~fw~~~~~D~~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~~ 94 (388)
T 2gz6_A 15 ALLNDVLPFWENHSLDSEGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDDE 94 (388)
T ss_dssp HHHHTHHHHHHHHCBCTTSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCTT
T ss_pred HHHHhHHHHHHhcCCCCCCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 3345667776 4455567776543211 135678888888876432 223467889999999976 7789
Q ss_pred CccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHhccc-CCCCC
Q 029612 84 GGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPT---PLHRAAKLLINSQL-EDGDF 148 (190)
Q Consensus 84 Ggw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~---~i~~a~~~L~~~Q~-~~Ggw 148 (190)
|||........ . ++ ........-|+++.||........++. ...+..+++++... ++|.|
T Consensus 95 Gg~~~~~d~dg--~--~~-~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~~g~~ 158 (388)
T 2gz6_A 95 GNWYFALTRGG--E--PL-VQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNPKGKY 158 (388)
T ss_dssp SCBCSEECTTS--C--BC-CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC--------
T ss_pred CCEEEEEcCCC--C--cc-cCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 98864321111 0 10 124556677899999887543222332 34556778887663 34544
No 57
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=93.23 E-value=0.64 Score=39.44 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=72.4
Q ss_pred HHHHHHHHHhc----CCCC----CcHHHHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHH
Q 029612 49 AWFAISGLVAA----KKTY----SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIH 120 (190)
Q Consensus 49 Ta~al~aL~~~----g~~~----~~~~~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~ 120 (190)
.++++.+|... .... ...+..++.++.|++.|.+||.|..... . ++...+.+.||....+|+.
T Consensus 268 nGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld---~------~~~y~EsSaTAmfaygllk 338 (445)
T 3k11_A 268 NGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLD---C------NDSYLETSATAIYVYCLAH 338 (445)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTT---C------TTSCEEHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccC---C------CCCCCCccHHHHHHHHHHH
Confidence 56666666543 2211 1236677889999999999999974311 0 1233456666665555544
Q ss_pred ---cCCCCCC--cHHHHHHHHHHHhcccCCCCCCCCcc-cccccC-ceeecc-----CCccchHHHHHHHHHHHhh
Q 029612 121 ---AGQMERD--PTPLHRAAKLLINSQLEDGDFPQQEL-TGVFME-NCMLHY-----PIYRNIFPMWALAEYRSRL 184 (190)
Q Consensus 121 ---~~~~~~~--~~~i~~a~~~L~~~Q~~~Ggw~~~~~-~g~~~~-~~~~~~-----~~~~~~~~l~aL~~~~~~~ 184 (190)
.|..+.. ..++.|+++.|+++-++||.-...+. +|.... ..|+.. ..+...-.|+|..|..+..
T Consensus 339 gvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~~v~~gtg~g~d~~~Y~~~p~~~~d~~G~G~fllA~~E~~~l~ 414 (445)
T 3k11_A 339 AINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVEGTCVGTGMAFDPAFYYYRPVNVYAAHGYGPVLWAGAEMIRLL 414 (445)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBCSCBCCCCCCSSHHHHHTCCBCTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEeceeeccCCCCCchhhccCcccCCCCccHHHHHHHHHHHHHHh
Confidence 3443211 13788999999998888996543332 222111 222222 2233445777877766644
No 58
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=93.15 E-value=0.49 Score=38.95 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=65.2
Q ss_pred CchHHHHHHHHHHHHHHHhccc-CCCccccc--c---cc--hhhHHHHHHHHHHhc---CC-CCCcHHHHHHHHHHHHhh
Q 029612 12 RTKEVKNFIAKATKFIEDIQKS-DGSWYGSW--G---IC--FTYAAWFAISGLVAA---KK-TYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~-dGsw~~~~--g---~~--~~~~Ta~al~aL~~~---g~-~~~~~~~i~ra~~~Ll~~ 79 (190)
.++++.+..++.++.|++.|.+ ||.|.... + .+ .+..||+...+|... |. +....+.++|+.+.|.+.
T Consensus 235 ~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~~Y~~~a~k~~~~l~~~ 314 (373)
T 1nc5_A 235 NRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQH 314 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHh
Confidence 3566889999999999999997 99986211 1 11 233466666666542 42 224678999999999874
Q ss_pred ---ccCCCcc--ccCCCccCCC--c-cCCCCCCCCcHHHHHHHHHHHHHc
Q 029612 80 ---QCEDGGW--GESYRSCPNK--K-YIPLDGNRSNLVQTAWAMMSLIHA 121 (190)
Q Consensus 80 ---Q~~DGgw--~~~~~~~~~~--~-~~~~~~~~s~~~~Ta~al~aL~~~ 121 (190)
.++||-- +..+...... . |...+..+.++...+..|+|+.+.
T Consensus 315 ~~~~~~dG~l~~~~~~~~~~~~~~~yY~~~~~~~~d~~G~g~~lla~~e~ 364 (373)
T 1nc5_A 315 KTETSEDGAFLVKDICVGTSAGFYDYYVSRERSTNDLHGAGAFILAMTEL 364 (373)
T ss_dssp HEEECTTSCEEECCEECSCCSCCHHHHHTSCEESSCHHHHHHHHHHHHHH
T ss_pred ceeECCCCCEEecceEEeCcCCCchhhhcccCCCCCcchHHHHHHHHHHH
Confidence 5788833 2211111000 0 111011123466778888887664
No 59
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=92.35 E-value=0.46 Score=38.86 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCchHHHHHHHHHHHHHHHh-cccCCCccccc---c-----cchhhHHHHHHHHHHhcCC---CCCcHHHHHHHHHHHHh
Q 029612 11 HRTKEVKNFIAKATKFIEDI-QKSDGSWYGSW---G-----ICFTYAAWFAISGLVAAKK---TYSNCLAIRKATDFLLK 78 (190)
Q Consensus 11 ~~~~~~~~~i~~a~~~L~~~-Q~~dGsw~~~~---g-----~~~~~~Ta~al~aL~~~g~---~~~~~~~i~ra~~~Ll~ 78 (190)
..+++..++++++++||++. +.++|+|.... | ....+.-++++.+|+++.. ++...+..++.++++++
T Consensus 70 ~~~~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~ 149 (388)
T 2gz6_A 70 EKRENWLKIARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLR 149 (388)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35677889999999999987 67788875322 1 2346778999999987432 11234566777888887
Q ss_pred hcc
Q 029612 79 IQC 81 (190)
Q Consensus 79 ~Q~ 81 (190)
...
T Consensus 150 ~~~ 152 (388)
T 2gz6_A 150 RKD 152 (388)
T ss_dssp C--
T ss_pred Hhc
Confidence 664
No 60
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=90.51 E-value=0.74 Score=39.05 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=53.3
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCcccccc--cc--hhhHHHHHHHHHHh---cCCCC--CcHHHHHHHHHHHHhhccC
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWG--IC--FTYAAWFAISGLVA---AKKTY--SNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g--~~--~~~~Ta~al~aL~~---~g~~~--~~~~~i~ra~~~Ll~~Q~~ 82 (190)
.++++.+.+++.++.|++.|.+||.|.--.. .+ .+.+||+.+.+|+. .|... ...+.++|+++.|.++-++
T Consensus 288 ~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~ 367 (445)
T 3k11_A 288 QRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINE 367 (445)
T ss_dssp THHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4678889999999999999999999953211 12 23356665555543 34421 2457889999999999999
Q ss_pred CCcc
Q 029612 83 DGGW 86 (190)
Q Consensus 83 DGgw 86 (190)
||--
T Consensus 368 dG~l 371 (445)
T 3k11_A 368 EGQV 371 (445)
T ss_dssp TSCB
T ss_pred CCCE
Confidence 9954
No 61
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=89.92 E-value=1.1 Score=37.18 Aligned_cols=127 Identities=13% Similarity=0.152 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHH-HHhcccCCCccccc---cc------chhhHHHHHHHHHHhcC---CCCCcHHHHHHHHHHHHhh-cc
Q 029612 16 VKNFIAKATKFI-EDIQKSDGSWYGSW---GI------CFTYAAWFAISGLVAAK---KTYSNCLAIRKATDFLLKI-QC 81 (190)
Q Consensus 16 ~~~~i~~a~~~L-~~~Q~~dGsw~~~~---g~------~~~~~Ta~al~aL~~~g---~~~~~~~~i~ra~~~Ll~~-Q~ 81 (190)
....+++.+.|- ...+.++|+|.... |. -..+.++..|.+++.+. ..+...+.++++++||.+. ..
T Consensus 11 l~~~~~~~l~fw~~~~~D~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d 90 (402)
T 3gt5_A 11 LRTHISDTMAFYHPRCIDSAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRN 90 (402)
T ss_dssp HHHHHHHHHHHHTTTTBCTTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHhcCCCCCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCcc
Confidence 456678888865 44566888875421 11 13556777777777653 1223467788999999874 45
Q ss_pred CC-CccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHhcc-cC-CCCCC
Q 029612 82 ED-GGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPT---PLHRAAKLLINSQ-LE-DGDFP 149 (190)
Q Consensus 82 ~D-Ggw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~---~i~~a~~~L~~~Q-~~-~Ggw~ 149 (190)
++ |||.... ..+ . +. .....+..-|++++||+...... ++. ...+..++|.+.. .+ .|++.
T Consensus 91 ~~~Gg~~~~~--~dG-~--~~-~~~~~lyd~Af~i~al~~~~~tg-d~~~l~~A~~l~~~i~~~f~d~~~G~~~ 157 (402)
T 3gt5_A 91 PATGGYAWTL--CDD-R--VE-DDTNHCYGLAFVMLAYSCGLKVG-IKQAREWMDETWCLLERHFWDAEYGLYK 157 (402)
T ss_dssp TTTSCBCSEE--ETT-E--EE-ECCEEHHHHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHHHHTEETTTTEEC
T ss_pred CCCCcEEEEe--eCC-C--CC-cCCcchHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHHhcCCcCCCch
Confidence 56 8886543 110 0 00 12345677899999988753322 332 3444566777654 33 35543
No 62
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=88.79 E-value=0.49 Score=39.26 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=63.2
Q ss_pred HHHHHHHHHHH-hhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHhcc
Q 029612 67 LAIRKATDFLL-KIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQ 142 (190)
Q Consensus 67 ~~i~ra~~~Ll-~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~---~~i~~a~~~L~~~Q 142 (190)
..+++.+.|-. ..+.++|||........ . +.+...-....++..+.++..+.....++ ..++++++||.+..
T Consensus 13 ~~~~~~l~fw~~~~~D~~GGf~~~l~~dg--~--~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~ 88 (402)
T 3gt5_A 13 THISDTMAFYHPRCIDSAGGFFHYFRDDG--S--IYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVH 88 (402)
T ss_dssp HHHHHHHHHHTTTTBCTTSSBCCEECTTS--C--EEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCCcCeeeEECCCC--C--CCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhC
Confidence 45677777654 56678899864321111 1 10122233556778777776653211122 36778999999864
Q ss_pred c-CC-CCCCCCcccccccCceeeccCCccchHHHHHHHHHHH
Q 029612 143 L-ED-GDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRS 182 (190)
Q Consensus 143 ~-~~-Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~ 182 (190)
. ++ |+|......|. ..-.....|.+.|++.||++|..
T Consensus 89 ~d~~~Gg~~~~~~dG~---~~~~~~~lyd~Af~i~al~~~~~ 127 (402)
T 3gt5_A 89 RNPATGGYAWTLCDDR---VEDDTNHCYGLAFVMLAYSCGLK 127 (402)
T ss_dssp BCTTTSCBCSEEETTE---EEECCEEHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEeeCCC---CCcCCcchHHHHHHHHHHHHHHH
Confidence 3 44 88764432221 11123356789999999999776
No 63
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=88.11 E-value=2.1 Score=35.17 Aligned_cols=130 Identities=8% Similarity=0.073 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHH-hcc-cCCCccccc---c-----cchhhHHHHHHHHHHhcC------CCCCcHHHHHHHHHHHH
Q 029612 14 KEVKNFIAKATKFIED-IQK-SDGSWYGSW---G-----ICFTYAAWFAISGLVAAK------KTYSNCLAIRKATDFLL 77 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~-~Q~-~dGsw~~~~---g-----~~~~~~Ta~al~aL~~~g------~~~~~~~~i~ra~~~Ll 77 (190)
+..++.+++++.+... ... ..|+|++.. | ....+..+..|.+++.+. ..+...+.++++++||.
T Consensus 13 ~~l~~~~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~~~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~ 92 (402)
T 1fp3_A 13 ERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLL 92 (402)
T ss_dssp HHHHHHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCCEeeEECCCCCCCCCccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3454556888888874 444 456764421 1 113456777777776432 22234678899999998
Q ss_pred hh-ccCCC--ccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHhcc--cCCCCC
Q 029612 78 KI-QCEDG--GWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPT---PLHRAAKLLINSQ--LEDGDF 148 (190)
Q Consensus 78 ~~-Q~~DG--gw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~---~i~~a~~~L~~~Q--~~~Ggw 148 (190)
+. ..++| ||..... .+. .+ .........-|+++.++.+......++. ...+.++++.+.. .++|.|
T Consensus 93 ~~~~d~~gg~g~~~s~d--~dg--~~-~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G~f 166 (402)
T 1fp3_A 93 RHARVAPPEKKCAFVLT--RDG--RP-VKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLG 166 (402)
T ss_dssp HHTBSSTTSCCBCSEEC--TTS--CE-EECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGGGC
T ss_pred HhccCcCCCCceEEEEC--CCC--Cc-cccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 76 56665 6754321 110 01 0113344556777777765433211221 3334556666554 345666
No 64
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=86.58 E-value=16 Score=32.07 Aligned_cols=141 Identities=9% Similarity=-0.030 Sum_probs=78.8
Q ss_pred HHHHHHHHhcccCCCcccc--------------cccchh--hHHHHHHHHHH----hcCCCCCcHHHHHHHHHHHHh---
Q 029612 22 KATKFIEDIQKSDGSWYGS--------------WGICFT--YAAWFAISGLV----AAKKTYSNCLAIRKATDFLLK--- 78 (190)
Q Consensus 22 ~a~~~L~~~Q~~dGsw~~~--------------~g~~~~--~~Ta~al~aL~----~~g~~~~~~~~i~ra~~~Ll~--- 78 (190)
-+++.|+++-.++|..... ++-.++ .+.++++.+|. .+|. .+..++..+||.+
T Consensus 12 ~~~~~~l~ni~~~g~~~~~~~tGaiIAsptts~pDYrY~W~RDaa~t~~aL~~~~~~~G~----~~~a~~~~~~l~~~~~ 87 (599)
T 2vn4_A 12 IALNNLLCNVGPDGCRAFGTSAGAVIASPSTIDPDYYYMWTRDSALVFKNLIDRFTETYD----AGLQRRIEQYITAQVT 87 (599)
T ss_dssp HHHHHHHTTBTTTCTTSTTSCTTCBCSCSCCSSSCCCSEEHHHHHHHHHHHHHHHHHSBC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccCCCCCCceEEEECCCCCCCCeEEchhhHHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcccc
Confidence 3778888888888764210 111122 35889999988 7775 3677889999974
Q ss_pred hc---cCCCccccC----CC--ccCC----CccCCCCCCCCcH---HHHHHHHHHHH--HcCCCC--C--CcHHHHHHHH
Q 029612 79 IQ---CEDGGWGES----YR--SCPN----KKYIPLDGNRSNL---VQTAWAMMSLI--HAGQME--R--DPTPLHRAAK 136 (190)
Q Consensus 79 ~Q---~~DGgw~~~----~~--~~~~----~~~~~~~~~~s~~---~~Ta~al~aL~--~~~~~~--~--~~~~i~~a~~ 136 (190)
.| ++||+|... .+ ...+ ..|.. ..-|. ..++..+.++. ..+... . ....|+++++
T Consensus 88 lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~~~w~~---~Q~D~~glr~~~~~~~~~~~~~~g~~~~~~~~~w~~v~~~l~ 164 (599)
T 2vn4_A 88 LQGLSNPSGSLADGSGLGEPKFELTLKPFTGNWGR---PQRDGPALRAIALIGYSKWLINNNYQSTVSNVIWPIVRNDLN 164 (599)
T ss_dssp HHHCCBTTBCSTTSGGGGCCEECTTSCBCCSCCSC---CCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHH
T ss_pred eeeeeCCCCCcccccCcCceEEecCCccccCcCCC---eeccccchhHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHH
Confidence 67 899998421 00 0011 11111 11222 12455554432 233210 0 1237899999
Q ss_pred HHHhcccC--CCCCCCCcccccccCceeeccCCccchHHHHHHHHH
Q 029612 137 LLINSQLE--DGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 180 (190)
Q Consensus 137 ~L~~~Q~~--~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~ 180 (190)
|+.+.-+. .|-|.... |. ..|+.++...||.+.
T Consensus 165 ~v~~~w~~~d~dlWEer~--g~---------~~~T~~~~~~aL~~a 199 (599)
T 2vn4_A 165 YVAQYWNQTGFDLWEEVN--GS---------SFFTVANQHRALVEG 199 (599)
T ss_dssp HHHHHTTSCEECTTSCCE--EE---------EHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCeeeecC--Cc---------chHHHHHHHHHHHHH
Confidence 99998874 37888764 21 223556666666543
No 65
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=84.79 E-value=6.9 Score=31.97 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=63.7
Q ss_pred HHHHHHHHHH-hhccC-CCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCC---CCc---HHHHHHHHHHH
Q 029612 68 AIRKATDFLL-KIQCE-DGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQME---RDP---TPLHRAAKLLI 139 (190)
Q Consensus 68 ~i~ra~~~Ll-~~Q~~-DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~---~~~---~~i~~a~~~L~ 139 (190)
.+++++.+.. ....+ .|||........ .+.+ .+......+.+|.++..+.... .++ ..++++++||.
T Consensus 18 ~~~~~l~~w~~~~~D~~~GGf~~~~~~dg----~~~~-~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~ 92 (402)
T 1fp3_A 18 ELDRVMAFWLEHSHDREHGGFFTCLGRDG----RVYD-DLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLL 92 (402)
T ss_dssp HHHHHHHHHHHHSBCTTTSSBCCCBCTTS----CBSC-CCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCCCCEeeEECCCC----CCCC-CccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3577888887 44443 578754322111 1211 2344666777787776543210 122 36788999999
Q ss_pred hcc-cCC-C-CCCCCc-ccccccCceeeccCCccchHHHHHHHHHHHhhc
Q 029612 140 NSQ-LED-G-DFPQQE-LTGVFMENCMLHYPIYRNIFPMWALAEYRSRLL 185 (190)
Q Consensus 140 ~~Q-~~~-G-gw~~~~-~~g~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~ 185 (190)
+.. .++ | ||.... ..|. ..-.....|...|.+.|+.++-+.+.
T Consensus 93 ~~~~d~~gg~g~~~s~d~dg~---~~~~~~~lyd~af~~~a~~~~~~atg 139 (402)
T 1fp3_A 93 RHARVAPPEKKCAFVLTRDGR---PVKVQRSIFSECFYTMAMNELWRVTA 139 (402)
T ss_dssp HHTBSSTTSCCBCSEECTTSC---EEECCSSSHHHHHHHHHHHHHHHHHC
T ss_pred HhccCcCCCCceEEEECCCCC---ccccccchHHHHHHHHHHHHHHHHhC
Confidence 984 444 4 776332 1121 11235567789999999998777653
No 66
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.31 E-value=1.6 Score=26.41 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCC
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG 84 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 84 (190)
.|..||...+. .|.||++||.++..|..
T Consensus 35 qA~kALKat~~------NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 35 CVLRAMKKKGE------NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHCS------CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHcCC------CHHHHHHHHHhCCCCCC
Confidence 34555555443 58899999999877654
No 67
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=83.16 E-value=9.2 Score=31.52 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=73.2
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCccccccc--------chhhHHHHHHHHHHhcCC---CCCcHHHHHHHHHHHHhhc
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI--------CFTYAAWFAISGLVAAKK---TYSNCLAIRKATDFLLKIQ 80 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~--------~~~~~Ta~al~aL~~~g~---~~~~~~~i~ra~~~Ll~~Q 80 (190)
..++..+.+.++.++|.++=++.+++.-.|+. ..+-.|-+-|.+|..++. ++...+...+.++++++..
T Consensus 105 g~~~~~~~~~~aA~~L~~r~~~~~g~i~sw~~~~~~~~~~~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~l~~~ 184 (377)
T 2ahf_A 105 KDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFL 184 (377)
T ss_dssp CCHHHHHHHHHHHHHHHTTEETTTTEECCBSSTTCTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCeEEeccCCCCCCCCceEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 45678899999999999887777543333431 112234445666665432 2234567777788888754
Q ss_pred -cCCCccccCCCccC-CCcc----CCCCCCCCc----HHHHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHhcccCCCC
Q 029612 81 -CEDGGWGESYRSCP-NKKY----IPLDGNRSN----LVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQLEDGD 147 (190)
Q Consensus 81 -~~DGgw~~~~~~~~-~~~~----~~~~~~~s~----~~~Ta~al~aL~~~~~~~~~~---~~i~~a~~~L~~~Q~~~Gg 147 (190)
++||+......... .+.. .. ++ -++ .=-.||++.+|........++ ....+..+|++++...+|+
T Consensus 185 ~r~dgs~~h~~~~D~~tG~~~~~~t~-qG-~~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 185 VRGDDSSYHTFYFDPENGNAIRGGTH-QG-NTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARVPEDGV 262 (377)
T ss_dssp BBTTSCBCSEEEECTTTCCEEEEECS-SS-SSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCTTSS
T ss_pred cCCCCCeEEEEEeeCCCCCeeeCCCc-CC-cCCcchhHHHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhHHhCC
Confidence 55776432211000 0000 00 01 111 112478888877653322233 2445567899998866776
No 68
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=78.66 E-value=26 Score=28.76 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=82.4
Q ss_pred CchHHHHHHHHHHHHHHHhc-ccCCCcccc-------------c---c--cchhh--HHHHHHHHHHhcCC---CCCcHH
Q 029612 12 RTKEVKNFIAKATKFIEDIQ-KSDGSWYGS-------------W---G--ICFTY--AAWFAISGLVAAKK---TYSNCL 67 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q-~~dGsw~~~-------------~---g--~~~~~--~Ta~al~aL~~~g~---~~~~~~ 67 (190)
.+++..++..++++++++.. ++||+.... + | ..+.| ..|+++.+|..+-. ++..-+
T Consensus 165 gd~~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~ 244 (377)
T 2ahf_A 165 GDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLE 244 (377)
T ss_dssp CCTHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 35667778888888888765 556653211 0 1 11222 35777777765421 212334
Q ss_pred HHHHHHHHHHhhccCCCc-cccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCC--C---Cc---HHHHHHHHHH
Q 029612 68 AIRKATDFLLKIQCEDGG-WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQME--R---DP---TPLHRAAKLL 138 (190)
Q Consensus 68 ~i~ra~~~Ll~~Q~~DGg-w~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~--~---~~---~~i~~a~~~L 138 (190)
..++..++++++...||+ +..... .. ++....+++.+|-+..+|++..... . +. ....+.++-|
T Consensus 245 ~A~~la~~~l~~~~~d~~pywd~~~--~~-----~~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l 317 (377)
T 2ahf_A 245 TAKRMARHFLARVPEDGVVYWDFEV--PQ-----EPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTAL 317 (377)
T ss_dssp HHHHHHHHHHTTCCTTSSCBSBTTS--CC-----CTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHhCCcccccCC--Cc-----cCCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH
Confidence 666778999998877777 222110 00 1122334555555544544432211 0 11 2456677777
Q ss_pred Hhcc------cCCCCCCCCcccccccCce-eeccCCccchHHHHHHHHHHHh
Q 029612 139 INSQ------LEDGDFPQQELTGVFMENC-MLHYPIYRNIFPMWALAEYRSR 183 (190)
Q Consensus 139 ~~~Q------~~~Ggw~~~~~~g~~~~~~-~~~~~~~~~~~~l~aL~~~~~~ 183 (190)
.+.- +.+|-..... +..|..- .-.-.+|...|.+.||.++.+.
T Consensus 318 ~~~y~~~~~~~~~g~L~h~~--~~~~~~~~~d~~~~ygDy~~~Eal~r~~~~ 367 (377)
T 2ahf_A 318 RDGYAERDDGEAEGFIRRGS--YHVRGGISPDDYTIWGDYYYLEALLRLERG 367 (377)
T ss_dssp HHHTBCCCCSSCCCSBSCBC--SBTTTTBSSSBCBHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCCCCeEEeccc--ccCCCCCCCCcCccHHHHHHHHHHHHHHcC
Confidence 6654 1222221111 1111111 1223445667999999999763
No 69
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=78.64 E-value=2.5 Score=26.01 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCC
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG 84 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 84 (190)
.++.||...+. .|.+|++||++.+..+|
T Consensus 36 an~~AL~at~G------nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 36 ANLQALIATDG------DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHTTS------CHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCC------CHHHHHHHHHhCCCccC
Confidence 45677776654 47899999999876554
No 70
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=74.36 E-value=3.6 Score=25.79 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCC
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG 84 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 84 (190)
.++.||...+. .+++|++||++.+.++-
T Consensus 46 ~~~~AL~~t~G------nve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 46 ANLQALVATDG------DIHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHHTTS------CHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHhCC------CHHHHHHHHHhCCCCCC
Confidence 45677776654 47899999998876654
No 71
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=74.09 E-value=14 Score=32.73 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcccCCCcccc--------cccchhhHHHHHHHHHHhcCCCCCcHHH-HHHHHHHHHhhc
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGS--------WGICFTYAAWFAISGLVAAKKTYSNCLA-IRKATDFLLKIQ 80 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~--------~g~~~~~~Ta~al~aL~~~g~~~~~~~~-i~ra~~~Ll~~Q 80 (190)
+..++.++||.+.|.++|+|... |+..-...|++.|.++....... .-+. ++++++|+.+..
T Consensus 359 ~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g-~~~~~v~~al~~i~~~~ 429 (684)
T 1lf6_A 359 DSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYD-LYDSLVKPLADFIIKIG 429 (684)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGG-GTTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcC-chHHHHHHHHHHHHHhC
Confidence 45778899999999999987432 33222445777777765543321 2356 999999998863
No 72
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=71.37 E-value=3.9 Score=24.66 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCC
Q 029612 113 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLED 145 (190)
Q Consensus 113 ~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~ 145 (190)
.|..||...+. .|+||++||-++..+.
T Consensus 35 qA~kALKat~~------NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 35 CVLRAMKKKGE------NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHCS------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCC------CHHHHHHHHHhCCCCC
Confidence 45667766543 5889999999987664
No 73
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=71.22 E-value=4.1 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCC
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG 84 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 84 (190)
..|+.||...+. .+++|++||++.|.|+-
T Consensus 44 ~~a~~AL~~~~~------nve~Ave~Ll~~~~p~~ 72 (73)
T 1vg5_A 44 TQVEVALAAADD------DLTVAVEILMSQSGPSS 72 (73)
T ss_dssp HHHHHHHHHHTS------CHHHHHHHHHTCSCSSC
T ss_pred HHHHHHHHHhCC------CHHHHHHHHHHCCCCCC
Confidence 356667766554 37899999999887653
No 74
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=70.23 E-value=10 Score=31.39 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhccCCCccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHhcccC-
Q 029612 68 AIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD--PTPLHRAAKLLINSQLE- 144 (190)
Q Consensus 68 ~i~ra~~~Ll~~Q~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~--~~~i~~a~~~L~~~Q~~- 144 (190)
.+...+.|-.....+. ||. .. ..+ +.+.+...-.+..++..+.++..+...+.+ ...++++++||.+....
T Consensus 16 ~~~~ll~f~~~~~d~~-GF~-~l--d~~--g~~~~~~~k~~~~nar~i~~~a~a~~~g~~~~l~~A~~~~~fl~~~~~D~ 89 (421)
T 2zbl_A 16 ETDRIFNFGKNAVVPT-GFG-WL--GNK--GQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDK 89 (421)
T ss_dssp HHHHHHHHHGGGEETT-EEC-CB--CTT--SCBCGGGCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTTTBCT
T ss_pred HHHHHHHHHHhCcCCC-Ccc-eE--CCC--CCCCCCchhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhccCc
Confidence 4455555555556666 564 11 111 111112234466778888777766432211 13678899999988644
Q ss_pred -CCCCCCCc-ccccccCceeeccCCccchHHHHHHHHHH
Q 029612 145 -DGDFPQQE-LTGVFMENCMLHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 145 -~Ggw~~~~-~~g~~~~~~~~~~~~~~~~~~l~aL~~~~ 181 (190)
+|||.... -.|.-+. .-..|.+.|.+.||.+|+
T Consensus 90 ~~GG~~~s~d~dg~~~~----~k~lyd~Af~i~al~~~~ 124 (421)
T 2zbl_A 90 KYGGWYACVNDQGVVDA----SKQGYQHFFALLGAASAV 124 (421)
T ss_dssp TTSSBCSEEETTEEEEC----CEEHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCcCC----chhHHHHHHHHHHHHHHH
Confidence 38886432 1221111 345667899999999963
No 75
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=70.18 E-value=50 Score=28.01 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=76.9
Q ss_pred HHHHHHHHhcccCCCcc-----c---------ccccchh--hHHHHHHHHHH---hcCCCCCcHHHHHHHHHHHHh---h
Q 029612 22 KATKFIEDIQKSDGSWY-----G---------SWGICFT--YAAWFAISGLV---AAKKTYSNCLAIRKATDFLLK---I 79 (190)
Q Consensus 22 ~a~~~L~~~Q~~dGsw~-----~---------~~g~~~~--~~Ta~al~aL~---~~g~~~~~~~~i~ra~~~Ll~---~ 79 (190)
-+++.|+++-.++|... | .|+-.++ .+.++++.+|. ..|.. +..++..+||.. .
T Consensus 13 ~~~~~~l~ni~~~G~~~~~~~tGaiIASpttsnpDYrY~W~RDaa~t~~aL~~~~~~G~~----~~a~~~~~~l~~~~~l 88 (472)
T 1gai_A 13 VARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDLFRNGDT----DLLSTIEHYISSQAII 88 (472)
T ss_dssp HHHHHHHHTBTTTCTTCTTCCTTCBCSCSCBSSSBCCSEEHHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccCCCCCCceEEeeCCCCCCCCeEEchhhHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHh
Confidence 37788888888888641 1 1111122 25899999998 77764 355667777765 3
Q ss_pred c---cCCCccc------cCCCccCC---CccCCCCCCCCcHH---HHHHHHHHHH--HcCCCC----CCcHHHHHHHHHH
Q 029612 80 Q---CEDGGWG------ESYRSCPN---KKYIPLDGNRSNLV---QTAWAMMSLI--HAGQME----RDPTPLHRAAKLL 138 (190)
Q Consensus 80 Q---~~DGgw~------~~~~~~~~---~~~~~~~~~~s~~~---~Ta~al~aL~--~~~~~~----~~~~~i~~a~~~L 138 (190)
| +++|.|. -.+..... ..|.. ...|.. .++..+.++. ..+... .....|++.++||
T Consensus 89 Q~~~~~~G~l~~~glgE~~y~vdG~~~~~~w~~---~Q~D~~g~ra~~~~~~~~~l~~~g~~~~~~~~~w~~i~~~l~~v 165 (472)
T 1gai_A 89 QGVSNPSGDLSSGGLGEPKFNVDETAYTGSWGR---PQRDGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRNDLSYV 165 (472)
T ss_dssp HHCCBTTBCTTTTGGGCCEECTTSCBCCSCCSC---CCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHH
T ss_pred hcccCCCCccccCCCCCceEccCCCccCCcCCC---ccccccchhHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 4 7888875 22111111 01111 111221 1444544433 333211 0113688999999
Q ss_pred HhcccC--CCCCCCCcccccccCceeeccCCccchHHHHHHHHHH
Q 029612 139 INSQLE--DGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 139 ~~~Q~~--~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~~ 181 (190)
.+.-+. .|-|.... |. ..|+.++...||.+..
T Consensus 166 ~~~w~~pd~dlWEer~--g~---------~~~T~~~~~~AL~~aa 199 (472)
T 1gai_A 166 AQYWNQTGYDLWEEVN--GS---------SFFTIAVQHRALVEGS 199 (472)
T ss_dssp HHHTTSCEECTTSCCE--EE---------EHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCCcccC--CC---------CHHHHHHHHHHHHHHH
Confidence 887764 37888764 21 2235666666776543
No 76
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=66.13 E-value=39 Score=28.79 Aligned_cols=120 Identities=10% Similarity=0.080 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCCCCc----HHHHHHHHHH---HHhhccCCCcccc---------CCCccCCCccCCCCCCCCcHHHH
Q 029612 48 AAWFAISGLVAAKKTYSN----CLAIRKATDF---LLKIQCEDGGWGE---------SYRSCPNKKYIPLDGNRSNLVQT 111 (190)
Q Consensus 48 ~Ta~al~aL~~~g~~~~~----~~~i~ra~~~---Ll~~Q~~DGgw~~---------~~~~~~~~~~~~~~~~~s~~~~T 111 (190)
..++++.+|...|..... .+.+++-++| |.+..+++|.|.. .+.. .+..+.+ .....-.+.+
T Consensus 70 Daa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~v-dG~~~~~-~w~~~Q~D~~ 147 (492)
T 2fba_A 70 DSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNT-DGSAYTG-AWGRPQNDGP 147 (492)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECT-TSCBCCS-CCSCCBTTHH
T ss_pred hHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeecc-CCCcCCc-ccCCccccch
Confidence 588999999888752111 4566667776 4444488998862 1111 1111100 0112334455
Q ss_pred HHHHHHHHH-------cCCC---------------CCC-cHHHHHHHHHHHhcccC--CCCCCCCcccccccCceeeccC
Q 029612 112 AWAMMSLIH-------AGQM---------------ERD-PTPLHRAAKLLINSQLE--DGDFPQQELTGVFMENCMLHYP 166 (190)
Q Consensus 112 a~al~aL~~-------~~~~---------------~~~-~~~i~~a~~~L~~~Q~~--~Ggw~~~~~~g~~~~~~~~~~~ 166 (190)
+..+.+|.. .+.. ... ...|++.++|+.+.-+. -|-|.... |. .
T Consensus 148 g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~pd~dlWEer~--g~---------~ 216 (492)
T 2fba_A 148 ALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTGFDLWEENQ--GR---------H 216 (492)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCEECTTSCCE--EC---------C
T ss_pred hHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCcCccC--CC---------C
Confidence 665555432 2211 000 13788899999987654 37787655 21 2
Q ss_pred CccchHHHHHHHHH
Q 029612 167 IYRNIFPMWALAEY 180 (190)
Q Consensus 167 ~~~~~~~l~aL~~~ 180 (190)
.|+.++...||.+.
T Consensus 217 ~~T~~~~~~AL~~a 230 (492)
T 2fba_A 217 FFTSLVQQKALAYA 230 (492)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33666667777553
No 77
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.64 E-value=5.1 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 82 (190)
.-+..||...+.. .+++|++||++++.+
T Consensus 34 ~~a~~AL~~t~~~-----nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 34 ARAQKALASTGGR-----SVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHTTTS-----CHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcCCC-----CHHHHHHHHHhCCCC
Confidence 4566666665531 488999999987654
No 78
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=64.73 E-value=57 Score=26.74 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHHHhcc-cC-CCccccc---c----cchhhHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHhh-
Q 029612 12 RTKEVKNFIAKATKFIEDIQK-SD-GSWYGSW---G----ICFTYAAWFAISGLVAAK--KTYSNCLAIRKATDFLLKI- 79 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~-~d-Gsw~~~~---g----~~~~~~Ta~al~aL~~~g--~~~~~~~~i~ra~~~Ll~~- 79 (190)
..++..++.++++++|.+... ++ |+|.-.. | ....|.-|+++.+++... ..+...+.+++.++++.+.
T Consensus 67 g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~~~~tg~~~~l~~a~~~~~~l~~~~ 146 (421)
T 2zbl_A 67 GRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYF 146 (421)
T ss_dssp TCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHh
Confidence 345677899999999987643 33 7764221 1 134567788888887631 1223467777889999764
Q ss_pred ccC-CCccccC
Q 029612 80 QCE-DGGWGES 89 (190)
Q Consensus 80 Q~~-DGgw~~~ 89 (190)
..+ +|||...
T Consensus 147 ~d~~~Ggf~~~ 157 (421)
T 2zbl_A 147 WSEEEQMCLES 157 (421)
T ss_dssp EETTTTEECCE
T ss_pred ccCCCCCeeee
Confidence 344 6887554
No 79
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.49 E-value=8.3 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCC
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQCED 83 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 83 (190)
..|+.||...+. .+.+|++||++.+.+.
T Consensus 24 ~~a~~AL~~~~~------nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 24 EASRQALMDNGN------NLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHHHTTS------CHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhCC------CHHHHHHHHHHCCCCc
Confidence 346677776654 3789999999886543
No 80
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=63.96 E-value=8.7 Score=22.35 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 82 (190)
.++.||...+. .|.+|++||++....
T Consensus 26 ~n~~AL~~~~G------dv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 26 ANLQALIATGG------DVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHTS------CHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCC------CHHHHHHHHHhCCCc
Confidence 35666766554 478999999987543
No 81
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=62.99 E-value=14 Score=30.70 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=74.1
Q ss_pred CchHHHHHHHHHHHHHHHhcccCCCccccccc-------chhhHHHHHHHHHHhcCC---CCCcHHHHHHHHHHHHhhc-
Q 029612 12 RTKEVKNFIAKATKFIEDIQKSDGSWYGSWGI-------CFTYAAWFAISGLVAAKK---TYSNCLAIRKATDFLLKIQ- 80 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~-------~~~~~Ta~al~aL~~~g~---~~~~~~~i~ra~~~Ll~~Q- 80 (190)
..++..+.+.++.++|.++-++.|++.-.|+. ..+-.+.+-|.+|..++. ++...+...+.++++++..
T Consensus 131 g~~~~~~~~~~aA~~L~~r~~~~~g~iqsw~~~~~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~~ 210 (397)
T 2zzr_A 131 GDVKALEATIKAADKLMERYQEKGGFIQAWGELGYKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVV 210 (397)
T ss_dssp CCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTB
T ss_pred CCHHHHHHHHHHHHHHHHHhCcCCCEEEecccCCCCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCc
Confidence 45678899999999999888888765444542 112246667777776543 2223455666778887655
Q ss_pred cCCCccccCCCccC-CCc------cCCCCCCCC-cHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHhcccCCCC
Q 029612 81 CEDGGWGESYRSCP-NKK------YIPLDGNRS-NLVQTAWAMMSLIHAGQMERDPT---PLHRAAKLLINSQLEDGD 147 (190)
Q Consensus 81 ~~DGgw~~~~~~~~-~~~------~~~~~~~~s-~~~~Ta~al~aL~~~~~~~~~~~---~i~~a~~~L~~~Q~~~Gg 147 (190)
++||+-........ .+. ..+. .+++ =.=..||++.||........++. ...+..++++++-..+|+
T Consensus 211 r~dgs~~h~~~~d~~~G~~~~~~t~qGy-~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~~la~~~l~~~~~d~~ 287 (397)
T 2zzr_A 211 RDDSSAFHTFYFDPETGEPLKGVTRQGY-SDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRLPEDKV 287 (397)
T ss_dssp CTTSCBCSEEEECTTTCCEEEEECTTSS-STTSCBHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred CCCCCeEEEEEeeCCCCCcccCCccccc-CcchhhHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHhCC
Confidence 44665322211000 000 0110 0011 11135888888877543222332 334456888887755665
No 82
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=62.81 E-value=51 Score=26.85 Aligned_cols=142 Identities=15% Similarity=0.181 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHhcccCCC-cccc-c---ccchhh-------HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGS-WYGS-W---GICFTY-------AAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC 81 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGs-w~~~-~---g~~~~~-------~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 81 (190)
..-++.++++++.|.+...+|+- +... + ...+.+ ..-.+.+-|+..|... +. ..+||.+.-.
T Consensus 187 ~~W~~l~~~g~~lL~~g~p~D~~~l~~~~~~~~~~~y~yd~~vn~iDalrv~L~La~~g~~~---~~---~~~fl~~~~~ 260 (350)
T 3ren_A 187 KKWEGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENVDFLLSTIVILNRIEAGENE---ES---SIKWIKEKFK 260 (350)
T ss_dssp THHHHHHHHHHHHHHTTBCCSSSCCBCSEEETTTTEECCCSEEEHHHHHHHHHHHHHTTCCC---HH---HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCcccccCCcccccCCCCcccccccchHHHHHHHHHHHhcCCCc---HH---HHHHHHHHHh
Confidence 44568889999999885556642 2211 1 111223 3455556677777752 22 3677764221
Q ss_pred CCC---ccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCC------CCCCCCc
Q 029612 82 EDG---GWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLED------GDFPQQE 152 (190)
Q Consensus 82 ~DG---gw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q~~~------Ggw~~~~ 152 (190)
.+| +|-... .+ .+ .....+...||+.++...... |.+-.+.+++-|.+-|..| ||+....
T Consensus 261 ~~g~l~~~y~~~---tg---~~---~~~~eS~g~yAiaal~~~~~~--D~~la~~~~~rm~~fq~~d~~s~yyGG~~~~~ 329 (350)
T 3ren_A 261 KDGFLVATYNGK---NG---DA---TSQIESPSIYSNVALIANYIG--DKELFNKAIDKLKYYQIKNKDSVLYGGFGDEK 329 (350)
T ss_dssp HHSSCCSEEETT---TC---CB---CCCCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHSCCCTTSTTTTSCSBTT
T ss_pred hcCCcceEEECC---CC---Cc---CCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcccCCCCcccCCcccccC
Confidence 234 332200 00 00 011122234455444443222 4447778899999888777 5555421
Q ss_pred ccccccCceeeccCCccchHHHHHHHHHH
Q 029612 153 LTGVFMENCMLHYPIYRNIFPMWALAEYR 181 (190)
Q Consensus 153 ~~g~~~~~~~~~~~~~~~~~~l~aL~~~~ 181 (190)
-.-+ -.|....||.|..+|.
T Consensus 330 ~~~~---------~sfdNL~~LlA~~~~~ 349 (350)
T 3ren_A 330 TNSV---------YSFDNLNALLAFQKYK 349 (350)
T ss_dssp TTBC---------BHHHHHHHHHHHHTCC
T ss_pred CCce---------eeeccHHHHHHHHhhc
Confidence 0001 2346888999887763
No 83
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=61.84 E-value=10 Score=23.55 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 82 (190)
..|..||...+. .+.+|++||++.+..
T Consensus 44 ~~a~~AL~~t~~------nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 44 DVARKALKASGG------DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHTTS------CHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhCC------CHHHHHHHHHhCCCC
Confidence 345666666543 478999999987654
No 84
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=61.39 E-value=7.1 Score=26.72 Aligned_cols=60 Identities=7% Similarity=-0.075 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcc-cCCCcccc--------cccc--hhhHHHHHHHHHHhcCCCC--------CcHHHHHHHHHHHHhh
Q 029612 20 IAKATKFIEDIQK-SDGSWYGS--------WGIC--FTYAAWFAISGLVAAKKTY--------SNCLAIRKATDFLLKI 79 (190)
Q Consensus 20 i~~a~~~L~~~Q~-~dGsw~~~--------~g~~--~~~~Ta~al~aL~~~g~~~--------~~~~~i~ra~~~Ll~~ 79 (190)
++++++||..++. .|-++... ...+ .....--.+..|.++|-.. .....+.||++||..+
T Consensus 36 ~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 36 IEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 6789999999873 22222110 0000 0111123456666666542 1234577999999875
No 85
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=60.93 E-value=14 Score=30.66 Aligned_cols=32 Identities=3% Similarity=0.201 Sum_probs=25.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhcccCCCccc
Q 029612 8 YPKHRTKEVKNFIAKATKFIEDIQKSDGSWYG 39 (190)
Q Consensus 8 ~~~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~ 39 (190)
+.....++..+.++++++|+.+.+.++|.|+.
T Consensus 244 ~~~~~~~~~~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 244 SLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp GGCCCHHHHHHTHHHHHHHHHHTCCTTSCCCS
T ss_pred HhhcChHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 33444567788999999999999999999864
No 86
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=60.69 E-value=6.5 Score=23.78 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc
Q 029612 49 AWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC 81 (190)
Q Consensus 49 Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 81 (190)
..-+..||...+.. .++.|++||++++.
T Consensus 23 ~~~a~~AL~~t~n~-----~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 23 VHTALKALAATGRK-----TAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHhCCC
Confidence 34677777776542 48899999999875
No 87
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.36 E-value=11 Score=22.07 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCC
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDG 84 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 84 (190)
..|..||...|.. -++.|++||.+.-.|+.
T Consensus 24 erae~Alk~Tg~~-----Gle~AmewL~k~~~~~~ 53 (54)
T 2cos_A 24 EMAGRALKQTGSR-----SIEAALEYISKMSGPSS 53 (54)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHhCcc-----cHHHHHHHHHHhcCCCC
Confidence 4566777766654 48899999999866654
No 88
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=58.13 E-value=27 Score=28.19 Aligned_cols=155 Identities=10% Similarity=-0.076 Sum_probs=76.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHhc---CCCCCcHHHHHHHHHHH-HhhccC--CC
Q 029612 11 HRTKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAA---KKTYSNCLAIRKATDFL-LKIQCE--DG 84 (190)
Q Consensus 11 ~~~~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~---g~~~~~~~~i~ra~~~L-l~~Q~~--DG 84 (190)
..+++..+.+.+++.++... .+|.|.. .+....++.++++..+ ...+...+..++..+++ ...-++ .|
T Consensus 62 tgd~~y~~~a~~~~~~~~~~--~~~~~~~----~~~DD~a~~~la~~~aye~t~~~~yL~~A~~l~~~l~~~~wd~~~gG 135 (349)
T 3k7x_A 62 TKKQADLEVAEKTYLHNKNR--NGGTLIH----DFYDDMLWNALAAYRLYKATGKSIYLEDAQLVWQDLVDTGWNDIMGG 135 (349)
T ss_dssp HCCHHHHHHHHHHHHHHHHH--TTSSSCC----SBHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCSGGGS
T ss_pred hCCHHHHHHHHHHHHHHHhc--CCCCCCc----cCccHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence 34667778889999988764 3444422 2334555544555443 22222345556677888 454443 25
Q ss_pred ccccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHhcc-cCCCCCCCCcccccccCc
Q 029612 85 GWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDP---TPLHRAAKLLINSQ-LEDGDFPQQELTGVFMEN 160 (190)
Q Consensus 85 gw~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~~---~~i~~a~~~L~~~Q-~~~Ggw~~~~~~g~~~~~ 160 (190)
|+..... .....++...+.++.++........++ ...++..+|+.+.. +++|.+.+ ...+ ...
T Consensus 136 Gi~W~~~----------~~~~knaisN~~~~~~la~l~~~tgd~~Yl~~A~~~~~w~~~~l~d~~g~v~D-g~~~--~~~ 202 (349)
T 3k7x_A 136 GFAWRRP----------QMYYKNTPVNAPFIILSCWLYNELNETKYLEWAMKTYEWQTKVLVREDGFVED-GINR--LED 202 (349)
T ss_dssp CBEEETT----------EEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHBCTTSCBCC-EECT--TSS
T ss_pred ceEecCC----------CccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCCeEec-CCcc--CCC
Confidence 5422100 001122334455555554432211122 25566788998754 34544432 1111 011
Q ss_pred eeec---cCCccchHHHHHHHHHHHhh
Q 029612 161 CMLH---YPIYRNIFPMWALAEYRSRL 184 (190)
Q Consensus 161 ~~~~---~~~~~~~~~l~aL~~~~~~~ 184 (190)
|... --.|.+.+.|.|+.+.-+.+
T Consensus 203 g~~~~~~~~tYnqg~~l~g~~~LY~~T 229 (349)
T 3k7x_A 203 GTIDYEWKFTYNQGVYIGANLELYRIT 229 (349)
T ss_dssp SCBCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcCeeeHHHHHHHHHHHHHHHhh
Confidence 2211 23456788999998865443
No 89
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=57.62 E-value=1.2e+02 Score=28.01 Aligned_cols=122 Identities=5% Similarity=-0.065 Sum_probs=65.8
Q ss_pred chHHHHHHHHHHHHHHHhccc---CCCcccccccchhhHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHhhccCCCcccc
Q 029612 13 TKEVKNFIAKATKFIEDIQKS---DGSWYGSWGICFTYAAWFAISGL-VAAKKTYSNCLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~~---dGsw~~~~g~~~~~~Ta~al~aL-~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
.+.+.+..++++.-|..+... ||-.+.. ......+.....++ ...+. .+..++.+++|.+.|.+||.+..
T Consensus 543 d~~lN~l~~~a~~tl~~n~~~~~tD~p~REr--~~W~gD~~~~a~~~l~~~g~----~~lar~~L~~l~~~Q~~dG~ip~ 616 (956)
T 2okx_A 543 DALLNATWEISRHTTRLCMEDTFVDCPSYEQ--VFWVGDSRNEALVNYYVFGE----TEIVERCLNLVPGSADETPLYLD 616 (956)
T ss_dssp CHHHHHHHHHHHHHHHHTBSSSBCSCTTTTC--CCBHHHHHHHHHHHHHHTCC----CHHHHHHHHHGGGGTTTCTTCCS
T ss_pred cHHHHHHHHHHHHHHHHhcccCccCCCcccC--CccHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhcccCCCcCc
Confidence 345556666666666554322 4432211 01122344444444 33443 36888999999999999998765
Q ss_pred CCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCCCCC-------cHHHHHHHHHHHhcccCCCCCC
Q 029612 89 SYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERD-------PTPLHRAAKLLINSQLEDGDFP 149 (190)
Q Consensus 89 ~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~~~~-------~~~i~~a~~~L~~~Q~~~Ggw~ 149 (190)
..+.. + ....+..+.+.++++........| -..++++++|+.+...++|-|.
T Consensus 617 ~~p~~----~-----~~~~~~~~~~~i~~~~~yy~~tGD~~~L~e~yp~lk~~l~~~~~~~d~~GLl~ 675 (956)
T 2okx_A 617 QVPSA----W-----SSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGLLN 675 (956)
T ss_dssp BSSCS----S-----CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTBCTTSSBC
T ss_pred ccccc----c-----cCCCcChHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 43211 0 112244555555555443111111 1378889999998766676553
No 90
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=56.90 E-value=10 Score=21.84 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhc
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQ 80 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q 80 (190)
..++.||...+. .+.+|++||++.+
T Consensus 27 ~~~~~AL~~t~g------nve~Ave~L~~~~ 51 (53)
T 2knz_A 27 EANLQALIATGG------DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHTS------CHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC------CHHHHHHHHHHcC
Confidence 356777776654 3789999998864
No 91
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=54.74 E-value=50 Score=28.19 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHHHHc----CCCCC-C---cHHHHHHHHHHHhcccCCC---CCCCC-------------------cccc
Q 029612 106 SNLVQTAWAMMSLIHA----GQMER-D---PTPLHRAAKLLINSQLEDG---DFPQQ-------------------ELTG 155 (190)
Q Consensus 106 s~~~~Ta~al~aL~~~----~~~~~-~---~~~i~~a~~~L~~~Q~~~G---gw~~~-------------------~~~g 155 (190)
-.++.+++.|.++... +.... + ..+++++++++.++|..+| -|.-. ..+|
T Consensus 177 yElDSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tG 256 (489)
T 2p0v_A 177 WEIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVG 256 (489)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSS
T ss_pred chhhhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCccCCCC
Confidence 4688899988876543 22211 1 1488889999999887764 33210 0112
Q ss_pred c---ccC----ceeeccCCccchHHHHHHHHHHHh
Q 029612 156 V---FME----NCMLHYPIYRNIFPMWALAEYRSR 183 (190)
Q Consensus 156 ~---~~~----~~~~~~~~~~~~~~l~aL~~~~~~ 183 (190)
. .+| .|.+.|..++.+++..+|.+..+.
T Consensus 257 Li~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaei 291 (489)
T 2p0v_A 257 LIASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEI 291 (489)
T ss_dssp CCCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHH
T ss_pred ceeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHH
Confidence 1 122 345667777888888888776654
No 92
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=54.35 E-value=87 Score=25.47 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcccCCCccc--ccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh-hccCCCccc
Q 029612 19 FIAKATKFIEDIQKSDGSWYG--SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLK-IQCEDGGWG 87 (190)
Q Consensus 19 ~i~~a~~~L~~~Q~~dGsw~~--~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~-~Q~~DGgw~ 87 (190)
..++++.-|..+-+..+..++ .+...+.+.+++++.+|...+. +...+.+.-+.. .|.++|...
T Consensus 4 l~~~a~~~l~~n~~~~~~vP~~~~f~~~~~wDs~~~~~gl~~~~~-----~~a~~~l~~~~~~~q~~~G~ip 70 (420)
T 2z07_A 4 LRTKAVEVLQRNSRGAFTVPAHGLYPYQWLWDSAFIALGWTQVDW-----ERAWQELLCLFDYGQGPDGMLP 70 (420)
T ss_dssp HHHHHHHHHHHHBCSSCBCSSTTCCSCEEHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHHCCTTCCCC
T ss_pred HHHHHHHHHHHcCCCCCcCCCCCCCCCccHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHhhCCCcc
Confidence 457777778776432222222 1223456789999998887543 334444444445 899999764
No 93
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=53.45 E-value=20 Score=33.56 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc-cCCCCCCCCcccccccCceeeccCCccchHHHHHHHHH
Q 029612 109 VQTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQ-LEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEY 180 (190)
Q Consensus 109 ~~Ta~al~aL~~~~~~~~~~~~i~~a~~~L~~~Q-~~~Ggw~~~~~~g~~~~~~~~~~~~~~~~~~l~aL~~~ 180 (190)
=.+++++++|...|. +...++.++||.+.| +++|.|...+..+.-+. +...-.-.+..+|+++.+|
T Consensus 332 RDaa~t~~all~~G~----~e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~--w~~~Q~D~~g~~l~~~~~~ 398 (1020)
T 1ulv_A 332 RDMYQSVTALLAAGD----EEAAARGVEWLFTYQQQPDGHFPQTSRVDGTIG--QNGIQLDETAFPILLANQI 398 (1020)
T ss_dssp HHHHHHHHHHHHHTC----HHHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBC--CCCCBTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCC----HHHHHHHHHHHHHHhcCCCCCeeeEEecCCCcC--CCCccCccchHHHHHHHHH
Confidence 356777777877765 236778999999999 88999876552222111 1111112245666666665
No 94
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=51.86 E-value=1.4e+02 Score=27.12 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=23.6
Q ss_pred hhhhhhCCCCCc----hHHHHHHHHHHHHHHHhcccCC
Q 029612 2 TLFKKLYPKHRT----KEVKNFIAKATKFIEDIQKSDG 35 (190)
Q Consensus 2 ~~~~~~~~~~~~----~~~~~~i~~a~~~L~~~Q~~dG 35 (190)
+.|+|.+|.... ..+-+.+.++++|+++...++|
T Consensus 442 ~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 442 SILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp GGGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSBCTTS
T ss_pred HHHHhhhhhhccccccccHHHHHHHHHHHHHhcCCCCC
Confidence 457777775543 2355788999999997666655
No 95
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.53 E-value=13 Score=22.31 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQC 81 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 81 (190)
..+..||...+.. .+++|++||++++.
T Consensus 24 ~~a~~AL~~t~~~-----nve~A~ewLl~~~~ 50 (64)
T 1whc_A 24 GRAEKALALTGNQ-----GIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC-----CHHHHHHHHHhCCC
Confidence 4566777766432 48899999998765
No 96
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.51 E-value=13 Score=23.08 Aligned_cols=28 Identities=4% Similarity=0.000 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 82 (190)
.-+..||...+.. .+++|++||++++.+
T Consensus 24 ~~a~~AL~~t~n~-----~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 24 DACRKAVYYTGNS-----GAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 4566777766532 388999999998754
No 97
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=49.76 E-value=1.1e+02 Score=25.25 Aligned_cols=164 Identities=14% Similarity=0.123 Sum_probs=82.4
Q ss_pred CchHHHHHHHHHHHHHHHhc-ccCCCccc---------cc-------cc--chhh--HHHHHHHHHHhcC---CCCCcHH
Q 029612 12 RTKEVKNFIAKATKFIEDIQ-KSDGSWYG---------SW-------GI--CFTY--AAWFAISGLVAAK---KTYSNCL 67 (190)
Q Consensus 12 ~~~~~~~~i~~a~~~L~~~Q-~~dGsw~~---------~~-------g~--~~~~--~Ta~al~aL~~~g---~~~~~~~ 67 (190)
.+++..+...++.+++++.. ++||+-.. .+ |. .+.| ..|+++.+|...- .+...-+
T Consensus 190 gd~~y~~~A~~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~ 269 (397)
T 2zzr_A 190 GDEKYRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQII 269 (397)
T ss_dssp CCHHHHHHHHHHHHHHHHHTBCTTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 35667777777888887765 44554211 00 11 1122 4688888887642 1212334
Q ss_pred HHHHHHHHHHhhccCCCc-cccCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCCC-CC---Cc----HHHHHHHHHH
Q 029612 68 AIRKATDFLLKIQCEDGG-WGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQM-ER---DP----TPLHRAAKLL 138 (190)
Q Consensus 68 ~i~ra~~~Ll~~Q~~DGg-w~~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~~-~~---~~----~~i~~a~~~L 138 (190)
..++..++++++-..||+ +..... +. .+..+.+++.+|-+..+|++.... +. +. ....+.++-|
T Consensus 270 ~A~~la~~~l~~~~~d~~pywdt~~--~~-----~~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l 342 (397)
T 2zzr_A 270 LFKGMTNYFLNRLPEDKVSYWDLIF--TD-----GSGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSL 342 (397)
T ss_dssp HHHHHHHHHHHTCCTTSCCBSBTTC--CT-----TSCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHhCCccccCCC--CC-----CCCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH
Confidence 556678888887655665 322110 00 012334566666666666554332 11 11 2345667777
Q ss_pred HhcccC----CCCCCCCcccccccCceeec-cCCccchHHHHHHHHHHH
Q 029612 139 INSQLE----DGDFPQQELTGVFMENCMLH-YPIYRNIFPMWALAEYRS 182 (190)
Q Consensus 139 ~~~Q~~----~Ggw~~~~~~g~~~~~~~~~-~~~~~~~~~l~aL~~~~~ 182 (190)
.+.-.. ++..--...++-.|..-... -..|...|.|.||.|+.+
T Consensus 343 ~~~y~~~~~~~~~glL~h~~~~~~~~~~~d~~~~~gDYy~~Eal~r~~~ 391 (397)
T 2zzr_A 343 IEQYSNNELIAGRPLLLHGVYSWHSGKGVDEGNIWGDYYYLEALIRFYK 391 (397)
T ss_dssp HHHTBCCCCCTTCCSBCCEEEETTTTEEEEECBHHHHHHHHHHHHHHHS
T ss_pred HHHHhccCCCCCCceeeeceeeCCCCCCCCCCcchHHHHHHHHHHHHhc
Confidence 665421 11111111111123322222 234678899999999875
No 98
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.08 E-value=17 Score=23.17 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQC 81 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 81 (190)
..+..||...+.. .+.+|++||++++.
T Consensus 44 ~~a~~AL~~t~n~-----n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 44 LHCQKAAINTSNA-----GVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHTTTC-----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-----CHHHHHHHHHhCCC
Confidence 4566777766532 47899999999864
No 99
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.86 E-value=19 Score=22.93 Aligned_cols=27 Identities=15% Similarity=-0.008 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc
Q 029612 49 AWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC 81 (190)
Q Consensus 49 Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 81 (190)
...|+.||...+. .+.+|++||++++.
T Consensus 43 ~~~A~~AL~~t~g------dve~A~e~L~sh~~ 69 (83)
T 1veg_A 43 TVVAEAALRVFGG------NVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHTTT------CHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC------CHHHHHHHHHhCCC
Confidence 3456667776653 38899999999765
No 100
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=45.62 E-value=17 Score=20.26 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFLLK 78 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~ 78 (190)
.++.||...+. .+.+|++||++
T Consensus 24 ~~~~AL~~~~g------nv~~Ave~L~~ 45 (46)
T 2bwb_A 24 RNVAALRRSGG------SVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHC
T ss_pred HHHHHHHHhCC------CHHHHHHHHHc
Confidence 45677776654 37799999975
No 101
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.49 E-value=16 Score=21.71 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 82 (190)
..+..||...+. .+++|++||++++..
T Consensus 24 ~~a~~AL~~t~~------nve~A~e~L~~~~~d 50 (63)
T 2dak_A 24 DQALKALRATNN------SLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHTTS------CSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHhCCCC
Confidence 355667766543 378999999987653
No 102
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=45.22 E-value=20 Score=21.09 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 79 (190)
.++.||...+. .+++|++||++.
T Consensus 34 ~~~~AL~~~~g------nve~Ave~L~~~ 56 (58)
T 1wr1_B 34 RNVAALRRSGG------SVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHTS------CHHHHHHHHHHT
T ss_pred HHHHHHHHhCC------CHHHHHHHHHhC
Confidence 45666766554 377999999864
No 103
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.81 E-value=30 Score=21.93 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccC
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQCE 82 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 82 (190)
.-+..||...+. .+++|++||++++..
T Consensus 44 ~~a~~AL~~t~~------nve~A~ewL~~~~~d 70 (83)
T 2dai_A 44 NRATKALQLNHM------SVPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHHTTS------CHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCC------CHHHHHHHHHHCCCC
Confidence 356667766532 478999999998653
No 104
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=40.45 E-value=25 Score=18.93 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFLLK 78 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~ 78 (190)
.++.||...+. .+.+|++||++
T Consensus 20 ~a~~AL~~~~~------n~e~A~~~L~~ 41 (43)
T 2g3q_A 20 EAHNALEKCNW------DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHTS------CHHHHHHHHHT
T ss_pred HHHHHHHHhCc------CHHHHHHHHHc
Confidence 56667776643 37789999975
No 105
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=39.50 E-value=1.4e+02 Score=26.57 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHh---hc-cCCCccccCCCccCCCccCCCCCCCCcHHHHHH---HHHHHHHc
Q 029612 49 AWFAISGLVAAKKTYSNCLAIRKATDFLLK---IQ-CEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAW---AMMSLIHA 121 (190)
Q Consensus 49 Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~---~Q-~~DGgw~~~~~~~~~~~~~~~~~~~s~~~~Ta~---al~aL~~~ 121 (190)
.++.+.+|+..+..+....-++++++.|.. .. .+||+|.+.. .|. -..+.+ .+.+|...
T Consensus 318 ~~l~~aalal~~e~~~a~~wl~~a~~~l~~~l~~~~~~DG~~~EG~------~Y~--------~~~~~~~~~~~~~l~~~ 383 (776)
T 3a0o_A 318 AVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGTDGGWAEGP------HYW--------MTGMAYLIEAANLIRSY 383 (776)
T ss_dssp HTHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCCTTBCTTSCBTTCH------HHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcccccCCCCCCccch------hHH--------HHHHHHHHHHHHHHHHh
Confidence 455566666554433234566667666533 23 5888886531 111 001111 12233222
Q ss_pred -CCC-CCCcHHHHHHHHHHHhcccCCCCC
Q 029612 122 -GQM-ERDPTPLHRAAKLLINSQLEDGDF 148 (190)
Q Consensus 122 -~~~-~~~~~~i~~a~~~L~~~Q~~~Ggw 148 (190)
+.. ...+ .+++...|+.....++|..
T Consensus 384 ~g~d~~~~p-~l~~~~~~~~~~~~p~g~~ 411 (776)
T 3a0o_A 384 IGYDLYQRP-FFQNTGRFPLYTKAPGTRR 411 (776)
T ss_dssp HCCCGGGSH-HHHHTTHHHHHHSCTTCSS
T ss_pred hCcchhhCH-hHHHHHHHHHHeeCCCCcE
Confidence 321 1233 7899999999999888754
No 106
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.25 E-value=30 Score=19.09 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 79 (190)
..+..||...| .+++|++||+++
T Consensus 24 ~~a~~AL~~~~-------n~e~A~~~L~~h 46 (47)
T 2ekk_A 24 EHAMEALLNTS-------TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHSC-------SHHHHHHHHHTC
T ss_pred HHHHHHHHHcC-------CHHHHHHHHHcC
Confidence 34566666553 378999999864
No 107
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=37.62 E-value=63 Score=28.86 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHh---c-ccCCCcccccccch-hhHHHH---HHHHHHh-cCCCCCcHHHHHHHHHHHHhhccCCC
Q 029612 14 KEVKNFIAKATKFIEDI---Q-KSDGSWYGSWGICF-TYAAWF---AISGLVA-AKKTYSNCLAIRKATDFLLKIQCEDG 84 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~---Q-~~dGsw~~~~g~~~-~~~Ta~---al~aL~~-~g~~~~~~~~i~ra~~~Ll~~Q~~DG 84 (190)
++..+.++++++.|... - .+||+|.+ |..| .+.+.. .+.+|.. .|.+....+.++++..|++....|||
T Consensus 332 ~~a~~wl~~a~~~l~~~l~~~~~~DG~~~E--G~~Y~~~~~~~~~~~~~~l~~~~g~d~~~~p~l~~~~~~~~~~~~p~g 409 (776)
T 3a0o_A 332 DEAGEWLDYTVEFLATLYSPWAGTDGGWAE--GPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKAPGT 409 (776)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTBCTTSCBTT--CHHHHHHHHHHHHHHHHHHHHHHCCCGGGSHHHHHTTHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCCcc--chhHHHHHHHHHHHHHHHHHHhhCcchhhCHhHHHHHHHHHHeeCCCC
Confidence 35667888888876542 2 68999865 3333 112221 2233322 24433346899999999999999987
Q ss_pred cc
Q 029612 85 GW 86 (190)
Q Consensus 85 gw 86 (190)
-.
T Consensus 410 ~~ 411 (776)
T 3a0o_A 410 RR 411 (776)
T ss_dssp SS
T ss_pred cE
Confidence 54
No 108
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.45 E-value=25 Score=19.71 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLK 78 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~ 78 (190)
.-++.||...+. .+.+|++||++
T Consensus 23 ~~a~~AL~~~~~------n~e~A~e~L~~ 45 (49)
T 1ify_A 23 ERVVAALRASYN------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHTTTS------CSHHHHHHHHH
T ss_pred HHHHHHHHHhCC------CHHHHHHHHHh
Confidence 456777776654 36789999987
No 109
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=35.83 E-value=1.1e+02 Score=25.07 Aligned_cols=23 Identities=9% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhccCCCcccc
Q 029612 66 CLAIRKATDFLLKIQCEDGGWGE 88 (190)
Q Consensus 66 ~~~i~ra~~~Ll~~Q~~DGgw~~ 88 (190)
.+.++++++|+++.+.++|.|..
T Consensus 253 ~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 253 HSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp HHTHHHHHHHHHHTCCTTSCCCS
T ss_pred HHHHHHHHHHHHHhhccCCCCCC
Confidence 46789999999999999998864
No 110
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=34.13 E-value=56 Score=28.59 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhccCCCc
Q 029612 66 CLAIRKATDFLLKIQCEDGG 85 (190)
Q Consensus 66 ~~~i~ra~~~Ll~~Q~~DGg 85 (190)
.+.|+-+++||+++|.++|.
T Consensus 230 ldeikwg~D~llk~q~~~g~ 249 (609)
T 1ut9_A 230 LDEARWEIEFFKKMQVTEKE 249 (609)
T ss_dssp HHHHHHHHHHHHHHBCCTTT
T ss_pred HHHHHHHHHHHHHhccCCCC
Confidence 56788899999999998873
No 111
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=32.85 E-value=1.9e+02 Score=25.71 Aligned_cols=120 Identities=16% Similarity=0.051 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHh-cccCCCcccccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhcc----CCCccc
Q 029612 13 TKEVKNFIAKATKFIEDI-QKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQC----EDGGWG 87 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~-Q~~dGsw~~~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~----~DGgw~ 87 (190)
...+...+.+-.+||... ....|.| ......+++..++..-+... ...-+++|+..|...-. +||++.
T Consensus 236 ~~~~l~sL~~ha~~L~~~~~~~~~Nh------~l~~~~aL~~agl~~pe~~~-~~~w~~~A~~~L~~el~~Qi~~DG~~~ 308 (702)
T 4fnv_A 236 LSTFLVEFAEQADFLVDYPYESGGNI------LISQANALATAGTLMPEFKN-AEKWMNTGYQILSEEVQNQIMSDGWHK 308 (702)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTCHHH------HHHHHHHHHHHHHHCTTBTT-HHHHHHHHHHHHHHHHHHSBCTTSCBT
T ss_pred HHHHHHHHHHHHHHHhhCCccCCChH------HHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHHHHHHhhcCCCCccc
Q ss_pred cCCCccCCCccCCCCCCCCcHHHHHHHHHHHHHcCC----CCCCcHHHHHHHHHHHhcccCCC-------CCC
Q 029612 88 ESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQ----MERDPTPLHRAAKLLINSQLEDG-------DFP 149 (190)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~~~~----~~~~~~~i~~a~~~L~~~Q~~~G-------gw~ 149 (190)
+..+.++ .-....-..+...+...+. ...-...++|.+.||.....+|| ..+
T Consensus 309 E~Sp~Yh----------~~vL~~ll~~~~la~~~g~~~~~p~~~~~~L~km~~~l~~l~~PDG~~~g~~~~lp 371 (702)
T 4fnv_A 309 EMSLHYH----------IGIVADFYEAMKLAEANQLSSKLPSDFTEPLRKAAEVVMYFTYPNYFIKGSDNVVP 371 (702)
T ss_dssp TCCHHHH----------HHHHHHHHHHHHHHHHTTCGGGSCTTTTHHHHHHHHHHHHTSCGGGGSCCSSCCSC
T ss_pred cCCHHHH----------HHHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHHcCCCCCccccccccC
No 112
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=32.70 E-value=26 Score=19.96 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=15.7
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 029612 113 WAMMSLIHAGQMERDPTPLHRAAKLLINS 141 (190)
Q Consensus 113 ~al~aL~~~~~~~~~~~~i~~a~~~L~~~ 141 (190)
-++.||...+. .+++|++||.+.
T Consensus 29 ~~~~AL~~t~g------n~e~A~e~L~~~ 51 (52)
T 2jy5_A 29 ANLQALIATGG------DINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHTTC
T ss_pred HHHHHHHHhCC------CHHHHHHHHHhC
Confidence 45667766643 377899999863
No 113
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=29.70 E-value=52 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHhhccCCCcc
Q 029612 65 NCLAIRKATDFLLKIQCEDGGW 86 (190)
Q Consensus 65 ~~~~i~ra~~~Ll~~Q~~DGgw 86 (190)
..+.|+=+++||+++|.++|.+
T Consensus 92 ~ldeikwg~D~llk~~~~~g~~ 113 (433)
T 1ks8_A 92 GRKAVKWATDYFIKAHTSQNEF 113 (433)
T ss_dssp HHHHHHHHHHHHHHHCCBTTBE
T ss_pred HHHHHHHHHHHHHHhccCCCcE
Confidence 3577778899999999998765
No 114
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=28.68 E-value=2.1e+02 Score=23.91 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCccc--cc-----------ccchhhHHHHHHHHHHhc---CCCC--CcHHHHHHHHHH
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYG--SW-----------GICFTYAAWFAISGLVAA---KKTY--SNCLAIRKATDF 75 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~--~~-----------g~~~~~~Ta~al~aL~~~---g~~~--~~~~~i~ra~~~ 75 (190)
+.++..-++..+|....-+++ +|-. +. ...++-.+++.|+++..+ |-.. ..-+.+.+.+++
T Consensus 20 ~~L~~~~r~T~~yF~~~~~p~-~gL~~Dn~~~~~~~p~~~a~~tS~tniGfgL~A~~vA~e~G~I~r~ea~~R~~~tL~~ 98 (430)
T 3eu8_A 20 ALMDTVQRRTFNYFWDAAEPN-SGLARERYHMDGEYPAGGPEIVTSGGSGFGIMAILAGIDRGYVSREEGLRRMEKIVGF 98 (430)
T ss_dssp HHHHHHHHHHHHHHHTSSCTT-TCCCBSEEETTCCCTTSCTTEEEHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCc-CCCCCCCccccCCCCCCCCCccCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 446677888899998776664 3211 11 123456788888888754 4321 123667778999
Q ss_pred HHhhccCCCccccCCCccCCCccCCC--CCCCCcHHHHHHHHHHHHHcCCC---C-CCcHHHHHHHHHHHhcc
Q 029612 76 LLKIQCEDGGWGESYRSCPNKKYIPL--DGNRSNLVQTAWAMMSLIHAGQM---E-RDPTPLHRAAKLLINSQ 142 (190)
Q Consensus 76 Ll~~Q~~DGgw~~~~~~~~~~~~~~~--~~~~s~~~~Ta~al~aL~~~~~~---~-~~~~~i~~a~~~L~~~Q 142 (190)
|.+..+-.|-|...+....... .|+ ....-+...||+.+.+|+.+... + .+..+|+.-++-|.+..
T Consensus 99 l~~~~r~~G~fyhwyD~~Tg~~-lpf~~~d~~~StVDTa~L~~GlL~ar~YF~~~~~~E~~i~~~~~~L~~~v 170 (430)
T 3eu8_A 99 LEKADRFKGAYPHWWNGETGHV-QPFGQKDNGGDLVETAFLMQGLLAVHQYYAEGSAEEKKLAGRIDKLWREV 170 (430)
T ss_dssp HHHSCCBTTBCCSEEETTTCCB-CCBTTTBCSEEHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC
T ss_pred HHhchhcCCcCccccCCCCCCc-CCCCcccCcccHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhC
Confidence 9988887887754332211110 010 01234567899999998876431 1 11235666666666644
No 115
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=27.41 E-value=1.3e+02 Score=26.24 Aligned_cols=66 Identities=18% Similarity=0.083 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccc---------------------------hhhHHHHHHHHHHhcCCC----
Q 029612 14 KEVKNFIAKATKFIEDIQKSDGSWYGSWGIC---------------------------FTYAAWFAISGLVAAKKT---- 62 (190)
Q Consensus 14 ~~~~~~i~~a~~~L~~~Q~~dGsw~~~~g~~---------------------------~~~~Ta~al~aL~~~g~~---- 62 (190)
+.+.+.++=+++||+++|.++|.+....+.. .....++.+.||+.+...
T Consensus 190 ~~lldE~rWg~D~llkm~~~~g~~y~qVgd~W~~d~~~R~~~~~~~~~~~~~~~y~~~~~~~agl~aAALA~Asrvf~d~ 269 (586)
T 3h7l_A 190 TRLIEEALFGADFLVRMQNEKGFFYMTVFDKWSKDTAQREICAYETQLGHKFDDYQAGFRQGGGVAIAALAAASRLGVHG 269 (586)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCBBCEEECTTCCCGGGCEEEEEETTTTEEESCCBCCGGGTHHHHHHHHHHHTTSSSCS
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEecCCCCCCCCccccccccCCCCCCCcceecCCCCcHHHHHHHHHHHhcccCCC
Q ss_pred ----CCcHHHHHHHHHHHHhh
Q 029612 63 ----YSNCLAIRKATDFLLKI 79 (190)
Q Consensus 63 ----~~~~~~i~ra~~~Ll~~ 79 (190)
...-...+++.+|+.+.
T Consensus 270 ~~~a~~~L~aA~~a~~fa~~~ 290 (586)
T 3h7l_A 270 EYDQQKYRNAAENGYWHLKEH 290 (586)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH
T ss_pred CcChHHHHHHHHHHHHHHHhc
No 116
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.05 E-value=64 Score=20.48 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhccC
Q 029612 68 AIRKATDFLLKIQCE 82 (190)
Q Consensus 68 ~i~ra~~~Ll~~Q~~ 82 (190)
.+.+|++||+.+..+
T Consensus 48 n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 48 NLDQAMSALLEKKVD 62 (85)
T ss_dssp CHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHCcCC
Confidence 378999999987654
No 117
>3nnb_A Alginate lyase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Probab=24.78 E-value=2.3e+02 Score=23.23 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcc-cCCCCCCCCcccc
Q 029612 129 TPLHRAAKLLINSQ-LEDGDFPQQELTG 155 (190)
Q Consensus 129 ~~i~~a~~~L~~~Q-~~~Ggw~~~~~~g 155 (190)
..|.+|++|+..-. ...-.|++.++.+
T Consensus 308 ~~L~kAleylapy~~~~~~~Wpy~~~~~ 335 (382)
T 3nnb_A 308 RSITAALKFLIPYIGKPQSEWPYQQIKE 335 (382)
T ss_dssp CSHHHHHHHHGGGTTSCGGGCCSCBCSC
T ss_pred hHHHHHHHHHHHhhccCCCCCCCcCCCC
Confidence 48999999999866 3345899887654
No 118
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=24.11 E-value=70 Score=21.35 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q 029612 51 FAISGLVAAKKTYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 51 ~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 79 (190)
.++.||...+. .+.+|++||++.
T Consensus 83 ~ni~AL~~t~G------dve~AVe~L~~~ 105 (108)
T 2cwb_A 83 LSLRALQATGG------DIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHHTS------CHHHHHHHHHHT
T ss_pred HHHHHHHHhCC------CHHHHHHHHHhc
Confidence 44455544433 467999999875
No 119
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=23.17 E-value=1.2e+02 Score=25.95 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=0.0
Q ss_pred CCcccccccc--hhhHHHHHHHHHHhc------------------CC--CCCcHHHHHHHHHHHHhhccCC-Ccc
Q 029612 35 GSWYGSWGIC--FTYAAWFAISGLVAA------------------KK--TYSNCLAIRKATDFLLKIQCED-GGW 86 (190)
Q Consensus 35 Gsw~~~~g~~--~~~~Ta~al~aL~~~------------------g~--~~~~~~~i~ra~~~Ll~~Q~~D-Ggw 86 (190)
|+|... |.. ++...++++..|..+ +. .+...+.|+-+++||+++|.++ |+.
T Consensus 139 GGwyDA-GD~~K~~~p~a~t~~~L~~a~~~~~~~~~~~~~i~es~~~~~~~d~ldeikwg~D~llk~~~~~~g~~ 212 (537)
T 3gzk_A 139 GGWHDA-GDYGKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPHLPPALEVAREEIAWLLTMQDPATGGV 212 (537)
T ss_dssp CSBCCS-SSCCEEHHHHHHHHHHHHHHHHHCHHHHHTCCCSGGGSCSSCCCHHHHHHHHHHHHHHHTBCTTTCCB
T ss_pred cceecC-CCcceecccHHHHHHHHHHHHHHhhhhhhhhhccccccCcccHHHHHHHHHHHHHHHHhcccCCCCeE
No 120
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=23.15 E-value=1.4e+02 Score=27.10 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcccCCCcccccc------c-----chhhHHHHHHHHHHh----cCCCC----------------CcH
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWG------I-----CFTYAAWFAISGLVA----AKKTY----------------SNC 66 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g------~-----~~~~~Ta~al~aL~~----~g~~~----------------~~~ 66 (190)
+.+++.+..+.+.|.+||.+...|. . .....+.+.+.++.. .|... ..-
T Consensus 382 e~ar~~il~~~~~Q~~dG~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~ 461 (822)
T 3rrs_A 382 ERARERIIDIASTQFADGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILDEPVPFDNEPGSEVPLF 461 (822)
T ss_dssp HHHHHHHHHHHTTCCTTSCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGGSEECSTTCTTCCEEHH
T ss_pred HHHHHHHHHHHHhhcccCcccceecCcCCCCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHHhhhhhhccccccccHH
Confidence 5688889999999999998543221 1 123345555555543 23210 013
Q ss_pred HHHHHHHHHHHhhccCCC
Q 029612 67 LAIRKATDFLLKIQCEDG 84 (190)
Q Consensus 67 ~~i~ra~~~Ll~~Q~~DG 84 (190)
+.++|+++|+++...++|
T Consensus 462 eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 462 EHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHHHHHHHSBCTTS
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 588999999997666655
No 121
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=23.08 E-value=73 Score=16.25 Aligned_cols=16 Identities=19% Similarity=-0.002 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhcc
Q 029612 66 CLAIRKATDFLLKIQC 81 (190)
Q Consensus 66 ~~~i~ra~~~Ll~~Q~ 81 (190)
+.+++.-++||++.+.
T Consensus 8 ~~aakdFv~WL~ngk~ 23 (31)
T 3c5t_B 8 EEAVRLFIEWLKNGGP 23 (31)
T ss_dssp HHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4677888999998663
No 122
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=22.58 E-value=2e+02 Score=26.00 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccc------c-----chhhHHHHHHHHHHh----cCCCCC----------------c
Q 029612 17 KNFIAKATKFIEDIQKSDGSWYGSWG------I-----CFTYAAWFAISGLVA----AKKTYS----------------N 65 (190)
Q Consensus 17 ~~~i~~a~~~L~~~Q~~dGsw~~~~g------~-----~~~~~Ta~al~aL~~----~g~~~~----------------~ 65 (190)
.+.+++.+..+.+.|.+||.+...|. . .....+.+.+.++.. .|.... .
T Consensus 374 p~~~r~~il~~~~~Q~~dG~~~h~~~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~e~~p~~~~~~~~~tl 453 (811)
T 3qde_A 374 PERARERLLDLAATQLEDGSAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILKEQVPFNNDPSKADTM 453 (811)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSEECTTTCCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGGSEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHHhhcccCCCccceecCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHHhhhhhhcCCcccccH
Confidence 36788899999999999998543221 1 123345555555543 232110 1
Q ss_pred HHHHHHHHHHHHhhccCCC
Q 029612 66 CLAIRKATDFLLKIQCEDG 84 (190)
Q Consensus 66 ~~~i~ra~~~Ll~~Q~~DG 84 (190)
-+.++|+++|+++...++|
T Consensus 454 ~eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 454 FEHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp HHHHHHHHHHHHTCBCTTS
T ss_pred HHHHHHHHHHHHhcCCCCC
Confidence 2588999999997666654
No 123
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=22.44 E-value=1.8e+02 Score=24.10 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHHHHHHhcc--cCCC-cccccccc-hhhHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHhh
Q 029612 13 TKEVKNFIAKATKFIEDIQK--SDGS-WYGSWGIC-FTYAAWFAISGLVAAKK-TYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 13 ~~~~~~~i~~a~~~L~~~Q~--~dGs-w~~~~g~~-~~~~Ta~al~aL~~~g~-~~~~~~~i~ra~~~Ll~~ 79 (190)
.+++++.|++.++++++.+. |.|- |...||.+ ++-.+++.+......+. .....+..++.++||+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~tp~Gl~~~~~WGs~~~~~n~a~l~~~~~~~~~~~~~y~~~A~~qldYiLG~ 341 (433)
T 1ks8_A 270 KQAYKDTVQSYVNYLINNQQKTPKGLLYIDMWGTLRHAANAAFIMLEAAELGLSASSYRQFAQTQIDYALGD 341 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTSCBCTTSCBCCCSTTHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCCcCCCCceeecCCchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhHhhccCC
Confidence 46677888888888887553 3332 32356643 23234444443333321 112356677889999987
No 124
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=22.25 E-value=23 Score=20.91 Aligned_cols=13 Identities=31% Similarity=0.802 Sum_probs=10.0
Q ss_pred HHHhcccCCCccc
Q 029612 27 IEDIQKSDGSWYG 39 (190)
Q Consensus 27 L~~~Q~~dGsw~~ 39 (190)
|...|++||+|.-
T Consensus 13 I~~s~RpDGT~RK 25 (58)
T 1rk8_C 13 IPATKRPDGTWRK 25 (58)
T ss_dssp ECCEECTTSCEEC
T ss_pred cccccCCCCcccc
Confidence 4457899999964
No 125
>3nnb_A Alginate lyase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Probab=21.68 E-value=1e+02 Score=25.34 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=39.0
Q ss_pred HHHHHHHHH-HHHHHHhcccCCCcccccccch-hhHHHHHHHHHH-----h--cCCCC-----CcHHHHHHHHHHHHhhc
Q 029612 15 EVKNFIAKA-TKFIEDIQKSDGSWYGSWGICF-TYAAWFAISGLV-----A--AKKTY-----SNCLAIRKATDFLLKIQ 80 (190)
Q Consensus 15 ~~~~~i~~a-~~~L~~~Q~~dGsw~~~~g~~~-~~~Ta~al~aL~-----~--~g~~~-----~~~~~i~ra~~~Ll~~Q 80 (190)
-+++++... ...|..+..+||+.+.+-++.. ..-+.|.|.+|. . .|.+. .+...|.+|++|+....
T Consensus 242 l~~~ai~~f~~~~i~~qI~pDG~qP~El~Rt~~~~Ys~f~L~~l~~lA~~A~~~G~DLw~y~~~~G~~L~kAleylapy~ 321 (382)
T 3nnb_A 242 LAMKTIQEFPEKRLFAQIEPDGKQPLELARTTALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYI 321 (382)
T ss_dssp HHHHHHHHHHHHTHHHHSCTTSCCHHHHTSTBHHHHHHHHHHHHHHHHHHHHTTTCCCTTCCCTTCCSHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccccCCCcchhHHHhhHHHHHHHHHHHHHcCCchhhccCCCchHHHHHHHHHHHhh
Confidence 344445554 4445556679998643323221 111333333332 1 23321 23578999999998876
Q ss_pred -cCCCcccc
Q 029612 81 -CEDGGWGE 88 (190)
Q Consensus 81 -~~DGgw~~ 88 (190)
...-.|..
T Consensus 322 ~~~~~~Wpy 330 (382)
T 3nnb_A 322 GKPQSEWPY 330 (382)
T ss_dssp TSCGGGCCS
T ss_pred ccCCCCCCC
Confidence 43346754
No 126
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=21.62 E-value=1.3e+02 Score=27.76 Aligned_cols=69 Identities=7% Similarity=0.054 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcccCCCccccccc----chhhHHHHHHHHHHh----cCCC---CCcHHHHHHHHHHHHhhccCCCcc
Q 029612 18 NFIAKATKFIEDIQKSDGSWYGSWGI----CFTYAAWFAISGLVA----AKKT---YSNCLAIRKATDFLLKIQCEDGGW 86 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGsw~~~~g~----~~~~~Ta~al~aL~~----~g~~---~~~~~~i~ra~~~Ll~~Q~~DGgw 86 (190)
+..++.+++|.+.|.+||.+....+. .....+.+.+.++.. .|.. ...-+.++++++|+.+...+||-|
T Consensus 595 ~lar~~L~~l~~~Q~~dG~ip~~~p~~~~~~~~~~~~~~i~~~~~yy~~tGD~~~L~e~yp~lk~~l~~~~~~~d~~GLl 674 (956)
T 2okx_A 595 EIVERCLNLVPGSADETPLYLDQVPSAWSSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGLL 674 (956)
T ss_dssp HHHHHHHHHGGGGTTTCTTCCSBSSCSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTBCTTSSB
T ss_pred HHHHHHHHHHHhhcccCCCcCccccccccCCCcChHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 45677888888899999987532211 111112222333322 2321 012468889999999877777755
No 127
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.56 E-value=94 Score=20.59 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhccCCCccccC
Q 029612 50 WFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGES 89 (190)
Q Consensus 50 a~al~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgw~~~ 89 (190)
--|+.||...+.+ +.+|+++|++.-..-|.|...
T Consensus 55 eeAr~AL~~~ngD------l~~AI~~Lleg~~~~~~W~~~ 88 (104)
T 1wj7_A 55 DECVIALHDCNGD------VNRAINVLLEGNPDTHSWEMV 88 (104)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHTCSSSCSSCSSC
T ss_pred HHHHHHHHHcCCC------HHHHHHHHHhCCCcCCceeee
Confidence 3567777776653 789999999765445788653
No 128
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=20.89 E-value=1.9e+02 Score=19.87 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=33.8
Q ss_pred CCCchHHHHHHHHHHHHHHHhcccCCCcc-c-ccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q 029612 10 KHRTKEVKNFIAKATKFIEDIQKSDGSWY-G-SWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKI 79 (190)
Q Consensus 10 ~~~~~~~~~~i~~a~~~L~~~Q~~dGsw~-~-~~g~~~~~~Ta~al~aL~~~g~~~~~~~~i~ra~~~Ll~~ 79 (190)
+.......+.+.++++||.+.....|... . ..|.+. ..+.++.-|..... -..++|++++.+.
T Consensus 63 D~~~~~l~~~~~~~~~fI~~~~~~~~~VlVHC~~G~sR--S~~vv~ayLm~~~~-----~s~~~A~~~v~~~ 127 (161)
T 3emu_A 63 SEEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNK--APAIVIAFLMYYQR-----LSFINAFNKVQGL 127 (161)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHTTCEEEEEESSSSSH--HHHHHHHHHHHHTT-----CCHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhcCCeEEEEcCCCCcH--HHHHHHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 33455566789999999988655555421 0 113222 12333333433222 1356788888765
No 129
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=20.02 E-value=1.8e+02 Score=25.97 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcccCCC
Q 029612 18 NFIAKATKFIEDIQKSDGS 36 (190)
Q Consensus 18 ~~i~~a~~~L~~~Q~~dGs 36 (190)
+..++.+.++.+.|.+||.
T Consensus 364 ~~ar~~l~~~~~~Q~~~G~ 382 (807)
T 1v7w_A 364 EMTRKRIVDLLRGQVKAGY 382 (807)
T ss_dssp HHHHHHHHHHHHTBCTTSC
T ss_pred HHHHHHHHHHHhccccCCC
Confidence 5678889999999999996
Done!