BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029613
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 257 bits (657), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 117/159 (73%), Positives = 141/159 (88%)
Query: 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65
NSTNI W E + +++RQ+LL+QKGCV+W+TGLSGSGKSTLA ++N+ LY +GKL YILD
Sbjct: 1 NSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60
Query: 66 GDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLP 125
GDN+RHGLN++L F AEDR ENIRRVGEVAKLFADAG+ICIASLISPYR DRDACR++LP
Sbjct: 61 GDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLP 120
Query: 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
+ +F+EVFM++PL +CEARDPKGLYKLARAGKIKG I
Sbjct: 121 EGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGI 159
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 182 bits (462), Expect = 9e-47, Method: Composition-based stats.
Identities = 93/175 (53%), Positives = 120/175 (68%), Gaps = 14/175 (8%)
Query: 7 STNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
+TN+ +Q + R +R +++ +G C VW+TGLSG+GK+T++ ++ + L G Y
Sbjct: 25 ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84
Query: 63 ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR- 121
LDGDN+R GLNKNLGFS EDR EN+RR+ EVAKLFADAGL+CI S ISPY +DR+ R
Sbjct: 85 TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 144
Query: 122 ----AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEK 172
A LP F EVF++ PL +CE RD KGLYK ARAG+IKG I S YEK
Sbjct: 145 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDS--EYEK 194
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 120/175 (68%), Gaps = 14/175 (8%)
Query: 7 STNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
+TN+ +Q + R +R +++ +G C VW+TGLSG+GK+T++ ++ + L G Y
Sbjct: 5 ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 64
Query: 63 ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR- 121
LDGDN+R GLNKNLGFS EDR EN+RR+ EVAKLFADAGL+CI S ISPY +DR+ R
Sbjct: 65 TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 124
Query: 122 ----AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEK 172
A LP F EVF++ PL +CE RD KGLYK ARAG+IKG I S YEK
Sbjct: 125 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDS--EYEK 174
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 179 bits (454), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 120/175 (68%), Gaps = 14/175 (8%)
Query: 7 STNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
+TN+ +Q + R +R +++ +G C +W+TGLSG+GK+T++ ++ + L G Y
Sbjct: 6 ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCY 65
Query: 63 ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR- 121
LDGDN+R GLNKNLGFS EDR EN+RR+ EVAKLFADAGL+CI S ISPY +DR+ R
Sbjct: 66 TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 125
Query: 122 ----AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEK 172
A LP F EVF++ PL +CE RD KGLYK ARAG+IKG I S YEK
Sbjct: 126 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDS--EYEK 175
>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1D6J|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1M7G|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7H|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
Length = 211
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 112/170 (65%), Gaps = 15/170 (8%)
Query: 7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILD 65
STNI + S + R ER +L NQ+G +W+TGLS SGKSTLA + +L R +Y LD
Sbjct: 2 STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61
Query: 66 GDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAM-- 123
GDN+R GLNK+LGFS DR ENIRR+ EVAKLFAD+ I I S ISPYRKDRD R +
Sbjct: 62 GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121
Query: 124 ---------LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
LP F+EV++++P+E+ E RDPKGLYK AR G IK I
Sbjct: 122 VATPGEETGLP---FVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGI 168
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 6/154 (3%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 88
+GC VW+TGLSG+GK+T++F++ + L S Y LDGDN+RHGLN+NLGFS DR ENI
Sbjct: 21 RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENI 80
Query: 89 RRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSN--FIEVFMNMPLELCEARDP 146
RR+ EVAKLFADAGL+CI S ISP+ KDR+ R + + F E+F++ PL +CE+RD
Sbjct: 81 RRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLNICESRDV 140
Query: 147 KGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKK 180
KGLYK ARAG+IKG I S YEK P T ++
Sbjct: 141 KGLYKRARAGEIKGFTGIDS--DYEK--PETPER 170
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/151 (58%), Positives = 108/151 (71%), Gaps = 10/151 (6%)
Query: 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
+ +GC VW+TGLSG+GK+T++ ++ + L G Y LDGDN+R GLNKNLGFS EDR E
Sbjct: 2 HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61
Query: 87 NIRRVGEVAKLFADAGLICIASLISPYRKDRDACR-----AMLPDSNFIEVFMNMPLELC 141
N+RR+ EVAKLFADAGL+CI S ISPY +DR+ R A LP F EVF++ PL +C
Sbjct: 62 NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLP---FFEVFVDAPLHVC 118
Query: 142 EARDPKGLYKLARAGKIKGLLSIFSFCYYEK 172
E RD KGLYK ARAG+IKG I S YEK
Sbjct: 119 EQRDVKGLYKKARAGEIKGFTGIDS--EYEK 147
>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|B Chain B, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|C Chain C, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|D Chain D, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
Length = 197
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/149 (54%), Positives = 99/149 (66%), Gaps = 15/149 (10%)
Query: 28 QKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
Q+G +W+TGLS SGKSTLA + +L R +Y LDGDN+R GLNK+LGFS DR E
Sbjct: 1 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 87 NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAM-----------LPDSNFIEVFMN 135
NIRR+ EVAKLFAD+ I I S ISPYRKDRD R + LP F+EV+++
Sbjct: 61 NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLP---FVEVYVD 117
Query: 136 MPLELCEARDPKGLYKLARAGKIKGLLSI 164
+P+E+ E RDPKGLYK AR G IK I
Sbjct: 118 VPVEVAEQRDPKGLYKKAREGVIKEFTGI 146
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 89/138 (64%)
Query: 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
+++G VW+TGL +GKST+A + L +RG+ +LDGD +R L++ LGFS EDR
Sbjct: 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT 428
Query: 87 NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDP 146
NI RVG VA + I +L+SPYR R+ R M+ + FIEVF++ P+E+CE RD
Sbjct: 429 NILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488
Query: 147 KGLYKLARAGKIKGLLSI 164
KGLYK A+ G IKG +
Sbjct: 489 KGLYKKAKEGLIKGFTGV 506
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
Query: 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87
+KG VVW+TGL GSGK+T+A + L G +LDGD R +++ GF+ E+R +
Sbjct: 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH 70
Query: 88 IRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSN--FIEVFMNMPLELCEARD 145
++R+ +A+L A G+I I S +SPY++ R+ R ++ + F+E+++ LE RD
Sbjct: 71 LKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRD 130
Query: 146 PKGLYKLARAGKIKGLLSI 164
PKGLYK A G+++ I
Sbjct: 131 PKGLYKKALKGELENFTGI 149
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 12 WQESP--IGRLERQKLLNQK-GCVVWITGLSGSGKSTLAFSVNKELYSRG-KLSYILDGD 67
W P + L RQ ++ G V+ TGLSG+GKSTLA ++ L G + +LDGD
Sbjct: 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407
Query: 68 NLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD- 126
+R L+ LGFS R N+RR+G VA I I + I+PYR+ R RAM+
Sbjct: 408 IVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAV 467
Query: 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKISAT 185
F+E+ + P+E CE+RD KGLY ARAG I + YE +P T + I T
Sbjct: 468 GGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSD--PYE--VPETPELAIDTT 522
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 76.6 bits (187), Expect = 8e-15, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-ILDGDNLRHGLNKNLGFSAEDRTEN 87
+G +++TG SGK +A ++ L +G S +L GD +RH L+ LGF+ EDR N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 88 IRRVGEVAKLFADAGLICIASLISPYRKDRDACR-AMLPDSNFIEVFMNMPLELCEARDP 146
I+R+ VA AG IA+ I+PY + R R A+ +F V + PLE CE D
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 147 KGLYKLARAGKIKGLLSI 164
+G+Y AR G+IKG +
Sbjct: 515 RGIYAAARRGEIKGFTGV 532
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 76.6 bits (187), Expect = 8e-15, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-ILDGDNLRHGLNKNLGFSAEDRTEN 87
+G +++TG SGK +A ++ L +G S +L GD +RH L+ LGF+ EDR N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 88 IRRVGEVAKLFADAGLICIASLISPYRKDRDACR-AMLPDSNFIEVFMNMPLELCEARDP 146
I+R+ VA AG IA+ I+PY + R R A+ +F V + PLE CE D
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 147 KGLYKLARAGKIKGLLSI 164
+G+Y AR G+IKG +
Sbjct: 515 RGIYAAARRGEIKGFTGV 532
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 33 VWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRV 91
V + G+SGSGK+T+A V E + +N+ + + + + EDR +R +
Sbjct: 32 VVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIA-TMQRGIPLTDEDRWPWLRSL 90
Query: 92 GEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144
E ADAG+ I + + R RD R P +F+ ++ P E+ + R
Sbjct: 91 AEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFL--HLDGPAEVIKGR 141
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
+G +V +TGLSGSGKS+LAF +Y+ G+ Y+
Sbjct: 43 RGKLVVLTGLSGSGKSSLAFDT---IYAEGQRRYV 74
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 30 GCVVWITGLSGSGKSTLAFSVNKELY 55
G V +TG+SGSGKSTL VN+ LY
Sbjct: 650 GTFVAVTGVSGSGKSTL---VNEVLY 672
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.4 bits (80), Expect = 0.021, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
+G +V +TGLSGSGKS+LAF +Y+ G+ Y+
Sbjct: 43 RGKLVVLTGLSGSGKSSLAFDT---IYAEGQRRYV 74
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 30 GCVVWITGLSGSGKSTLAFSVNKELY 55
G V +TG+SGSGKSTL VN+ LY
Sbjct: 650 GTFVAVTGVSGSGKSTL---VNEVLY 672
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.4 bits (80), Expect = 0.022, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
+G +V +TGLSGSGKS+LAF +Y+ G+ Y+
Sbjct: 43 RGKLVVLTGLSGSGKSSLAFDT---IYAEGQRRYV 74
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 30 GCVVWITGLSGSGKSTLAFSVNKELY 55
G V +TG+SGSGKSTL VN+ LY
Sbjct: 348 GTFVAVTGVSGSGKSTL---VNEVLY 370
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 27/96 (28%)
Query: 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------------------ 71
G V + G SGSGKST+ S+ LY + LDG ++R
Sbjct: 401 GSVTALVGPSGSGKSTV-LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 459
Query: 72 ----GLNKNLGFSAEDRT----ENIRRVGEVAKLFA 99
+ +N+ + A+D + E I+RV EVA A
Sbjct: 460 LFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVA 495
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 27/96 (28%)
Query: 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------------------ 71
G V + G SGSGKST+ S+ LY + LDG ++R
Sbjct: 370 GSVTALVGPSGSGKSTV-LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428
Query: 72 ----GLNKNLGFSAEDRT----ENIRRVGEVAKLFA 99
+ +N+ + A+D + E I+RV EVA A
Sbjct: 429 LFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVA 464
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 6/40 (15%)
Query: 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71
V+ +TG+SGSGKS++A + L + G +YI+D D+L H
Sbjct: 77 VLGLTGISGSGKSSVA----QRLKNLG--AYIIDSDHLGH 110
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 30.8 bits (68), Expect = 0.47, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
+ ++ TGLSGSGKS+LAF +++ G+ Y+
Sbjct: 45 RDALIVFTGLSGSGKSSLAFDT---IFAEGQRRYV 76
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 18 GRLERQKLLN---QKGCVVWITGLSGSGKSTLAFSVN-KELYSRGKLSYILDGDNLR 70
G LE K +N ++G VV + G SGSGKST +N E + G++ I+DG NL+
Sbjct: 14 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI--IIDGINLK 68
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified
Dna
Length = 916
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
K +V ITG+SGSGKS+LA +Y+ G+ Y+
Sbjct: 23 KNRLVVITGVSGSGKSSLAMDT---IYAEGQRRYL 54
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 18 GRLERQKLLN---QKGCVVWITGLSGSGKSTLAFSVN-KELYSRGKLSYILDGDNLR 70
G LE K +N ++G VV + G SGSGKST +N E + G++ I+DG NL+
Sbjct: 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI--IIDGINLK 89
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 55 YSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLI 110
+SRG L + L G ++ +G +K + S DR+ ++F AGLI A+++
Sbjct: 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN--------PRVFLPAGLILAAAVM 106
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL-RHGLNKNLGFSAEDRTENIRR 90
+V+I G GSGKSTLA ++ K+L L + LD D L N+ + E + EN R
Sbjct: 7 IVFI-GFXGSGKSTLARALAKDL----DLVF-LDSDFLIEQKFNQKVSEIFEQKRENFFR 60
Query: 91 VGE--VAKLFADAGLICIAS 108
E A F+ CIA+
Sbjct: 61 EQEQKXADFFSSCEKACIAT 80
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83
+L ++K ++ +TG +GSGKST S+ + I D + + F +
Sbjct: 130 ELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY------VFKHKK 183
Query: 84 RTENIRRVGEVAKLFADA 101
N R VGE K FADA
Sbjct: 184 SIVNQREVGEDTKSFADA 201
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 30.0 bits (66), Expect = 0.84, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL 73
E+PI L+ L +KG V G+SG GKSTL ++ Y ++DG N++ L
Sbjct: 353 EAPI--LKDINLSIEKGETVAFVGMSGGGKSTL-INLIPRFYDVTSGQILIDGHNIKDFL 409
Query: 74 NKNL 77
+L
Sbjct: 410 TGSL 413
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 4 VGNSTNIFWQESPIGR--LERQKLLNQKGCVVWITGLSGSGKSTL 46
V N ++IF + +P+ + LE L+ +G + + G +GSGKSTL
Sbjct: 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTL 49
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.0 bits (66), Expect = 0.87, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
+ +V TG+SGSGKS+LAF LY+ + Y+
Sbjct: 35 RDALVVFTGVSGSGKSSLAFGT---LYAEAQRRYL 66
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 35 ITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGE 93
++G G+GK+T+ +++ L RG+ +DGD L+ LG D T + GE
Sbjct: 8 VSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGE 66
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 4 VGNSTNIFWQESPIGR--LERQKLLNQKGCVVWITGLSGSGKSTL 46
V N ++IF + +P+ + LE L+ +G + + G +GSGKSTL
Sbjct: 7 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTL 51
>pdb|2EYU|A Chain A, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
pdb|2EYU|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
Length = 261
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83
+L ++K ++ +TG +GSGKST S + I D + + F +
Sbjct: 19 ELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDPIEY------VFKHKK 72
Query: 84 RTENIRRVGEVAKLFADA 101
N R VGE K FADA
Sbjct: 73 SIVNQREVGEDTKSFADA 90
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE---- 82
N + + G+SGSGKS +A V +L++ LDGD L N S E
Sbjct: 5 NHDHHIYVLXGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKXASGEPLND 59
Query: 83 -DRTENIRRVGEVAKLFA-----DAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNM 136
DR ++ + + A FA LI ++L Y RD R P+ +FI ++
Sbjct: 60 DDRKPWLQALNDAA--FAXQRTNKVSLIVCSALKKHY---RDLLREGNPNLSFI--YLKG 112
Query: 137 PLELCEAR 144
++ E+R
Sbjct: 113 DFDVIESR 120
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83
+L ++K ++ +TG +GSGKST S + I D + + F +
Sbjct: 119 ELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDPIEY------VFKHKK 172
Query: 84 RTENIRRVGEVAKLFADA 101
N R VGE K FADA
Sbjct: 173 SIVNQREVGEDTKSFADA 190
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83
+L ++K ++ +TG +GSGKST S + I D + + F +
Sbjct: 130 ELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDPIEY------VFKHKK 183
Query: 84 RTENIRRVGEVAKLFADA 101
N R VGE K FADA
Sbjct: 184 SIVNQREVGEDTKSFADA 201
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70
G V + G SGSGKST+A S+ Y + ++DG +LR
Sbjct: 369 GKTVALVGRSGSGKSTIA-SLITRFYDIDEGEILMDGHDLR 408
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE---- 82
N + + G+SGSGKS +A V +L++ LDGD L N S E
Sbjct: 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGEPLND 59
Query: 83 -DRTENIRRVGEVAKLFA-----DAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNM 136
DR ++ + + A FA LI ++L Y RD R P+ +FI ++
Sbjct: 60 DDRKPWLQALNDAA--FAMQRTNKVSLIVCSALKKHY---RDLLREGNPNLSFI--YLKG 112
Query: 137 PLELCEAR 144
++ E+R
Sbjct: 113 DFDVIESR 120
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 1 MATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVN-KELYSRG 58
M + N T +F Q + I L L G + + G SG+GKSTL VN E + G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 59 KLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLF 98
S ++DG L S + T+ R++G + + F
Sbjct: 61 --SVLVDGQELT-------TLSESELTKARRQIGMIFQHF 91
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 28.9 bits (63), Expect = 2.1, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70
G V + G SGSGKST+A S+ Y + ++DG +LR
Sbjct: 369 GKTVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHDLR 408
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 1 MATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVN-KELYSRG 58
M + N T +F Q + I L L G + + G SG+GKSTL VN E + G
Sbjct: 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 59 KLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLF 98
S ++DG L S + T+ R++G + + F
Sbjct: 84 --SVLVDGQELT-------TLSESELTKARRQIGMIFQHF 114
>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
Length = 356
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLN----KNLGF 79
+G +V I G SGK+TLA E G ++ +D + H L+ KNLG
Sbjct: 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE---HALDPVYAKNLGV 111
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE 82
+K V+ + G+ GSGK+T A + + + RG ++ D R + L AE
Sbjct: 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAE 151
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE 82
+K V+ + G+ GSGK+T A + + + RG ++ D R + L AE
Sbjct: 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAE 151
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 28.1 bits (61), Expect = 3.2, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70
+G V + G SGSGKST+A ++ Y S LDG ++R
Sbjct: 368 QGKTVALVGRSGSGKSTIA-NLFTRFYDVDSGSICLDGHDVR 408
>pdb|1P9R|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
pdb|1P9W|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
Length = 418
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS 56
++L+ + ++ +TG +GSGKST ++ +EL S
Sbjct: 160 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS 193
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69
+SP+ L+ L ++G V+ I G SGSGKSTL + + Y ++DG +L
Sbjct: 16 DSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDL 69
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
Length = 241
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69
+SP+ L+ L ++G V+ I G SGSGKSTL + + Y ++DG +L
Sbjct: 14 DSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDL 67
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69
+SP+ L+ L ++G V+ I G SGSGKSTL + + Y ++DG +L
Sbjct: 20 DSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDL 73
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69
+SP+ L+ L ++G V+ I G SGSGKSTL + + Y ++DG +L
Sbjct: 20 DSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDL 73
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69
+SP+ L+ L ++G V+ I G SGSGKSTL + + Y ++DG +L
Sbjct: 14 DSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDL 67
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69
+SP+ L+ L ++G V+ I G SGSGKSTL + + Y ++DG +L
Sbjct: 20 DSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDL 73
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVN-KELYSRGKLS 61
+ N T +F Q + I L L G + + G SG+GKSTL VN E + G S
Sbjct: 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG--S 84
Query: 62 YILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLF 98
++DG L S + T+ R++G + + F
Sbjct: 85 VLVDGQELT-------TLSESELTKARRQIGXIFQHF 114
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLS 61
V + FW+E L+ ++G ++ + G +G+GK++L + EL S GK+
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 62 Y 62
+
Sbjct: 67 H 67
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLS 61
V + FW+E L+ ++G ++ + G +G+GK++L + EL S GK+
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 62 Y 62
+
Sbjct: 67 H 67
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 116 DRDACRAMLPDSNFIEVFMNMPLELC 141
D C+ LP +NF + N+P ++C
Sbjct: 191 DNGECKIFLPSNNFTSMETNLPQQVC 216
>pdb|3SQ3|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
Length = 470
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 116 DRDACRAMLPDSNFIEVFMNMPLELC 141
D C+ LP +NF + N+P ++C
Sbjct: 114 DNGECKIFLPSNNFTSMETNLPQQVC 139
>pdb|3SQ7|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
Length = 470
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 116 DRDACRAMLPDSNFIEVFMNMPLELC 141
D C+ LP +NF + N+P ++C
Sbjct: 114 DNGECKIFLPSNNFTSMETNLPQQVC 139
>pdb|3SQ5|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
Length = 470
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 116 DRDACRAMLPDSNFIEVFMNMPLELC 141
D C+ LP +NF + N+P ++C
Sbjct: 114 DNGECKIFLPSNNFTSMETNLPQQVC 139
>pdb|3SQ8|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
Length = 470
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 116 DRDACRAMLPDSNFIEVFMNMPLELC 141
D C+ LP +NF + N+P ++C
Sbjct: 114 DNGECKIFLPSNNFTSMETNLPQQVC 139
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLS 61
V + FW+E L+ ++G ++ + G +G+GK++L + EL S GK+
Sbjct: 19 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 78
Query: 62 Y 62
+
Sbjct: 79 H 79
>pdb|1NY6|A Chain A, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|B Chain B, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|C Chain C, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|D Chain D, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|E Chain E, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|F Chain F, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|G Chain G, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|H Chain H, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|I Chain I, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|J Chain J, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|K Chain K, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|L Chain L, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|M Chain M, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
pdb|1NY6|N Chain N, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In
The Active State
Length = 267
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
LE+ K ++ C V ITG SG GK +A ++K L R K ++
Sbjct: 30 LEKIKKISCAECPVLITGESGVGKEVVARLIHK-LSDRSKEPFV 72
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 14 ESPIGR--LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
ESP + LE+ K ++ C V ITG SG GK +A ++K L R K ++
Sbjct: 142 ESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK-LSDRSKEPFV 192
>pdb|3M0E|A Chain A, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|B Chain B, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|C Chain C, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|D Chain D, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|E Chain E, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|F Chain F, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|G Chain G, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
Length = 266
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
LE+ K ++ C V ITG SG GK +A ++K L R K ++
Sbjct: 29 LEKIKKISCAECPVLITGESGVGKEVVARLIHK-LSDRSKEPFV 71
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69
+SP+ L+ L ++G V+ I G +GSGKSTL + + Y ++DG +L
Sbjct: 16 DSPV-ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQR-FYIPENGQVLIDGHDL 69
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE 82
+K V+ I G++G GK+T + L + G + GD R + L AE
Sbjct: 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAE 209
>pdb|3H1T|A Chain A, The Fragment Structure Of A Putative Hsdr Subunit Of A
Type I Restriction Enzyme From Vibrio Vulnificus Yj016
Length = 590
Score = 26.6 bits (57), Expect = 9.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 11 FWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS 56
++Q+ I R + L +K + IT +G+GK+ +AF ++ +L+S
Sbjct: 181 YYQQIAINRAVQSVLQGKKRSL--ITXATGTGKTVVAFQISWKLWS 224
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE 82
+K V+ I G++G GK+T + L + G + GD R + L AE
Sbjct: 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAE 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,370,763
Number of Sequences: 62578
Number of extensions: 210704
Number of successful extensions: 747
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 92
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)