Query 029613
Match_columns 190
No_of_seqs 194 out of 2022
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 15:43:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0529 CysC Adenylylsulfate k 100.0 9.9E-37 2.1E-41 229.3 16.9 172 9-181 2-173 (197)
2 COG1126 GlnQ ABC-type polar am 100.0 1.5E-37 3.2E-42 240.9 8.5 158 3-163 1-189 (240)
3 KOG0635 Adenosine 5'-phosphosu 100.0 7.9E-36 1.7E-40 219.1 15.0 177 7-184 8-184 (207)
4 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.8E-36 6.1E-41 241.2 7.6 159 1-162 1-191 (254)
5 COG1120 FepC ABC-type cobalami 100.0 1.5E-35 3.3E-40 237.9 7.0 151 4-157 2-185 (258)
6 COG1116 TauB ABC-type nitrate/ 100.0 7.7E-35 1.7E-39 230.7 9.2 148 4-155 3-175 (248)
7 COG1125 OpuBA ABC-type proline 100.0 3.5E-34 7.5E-39 226.8 10.8 149 4-155 1-180 (309)
8 COG3839 MalK ABC-type sugar tr 100.0 6.1E-35 1.3E-39 242.5 6.5 169 1-176 1-196 (338)
9 COG3842 PotA ABC-type spermidi 100.0 6.3E-34 1.4E-38 237.6 6.6 168 3-176 4-199 (352)
10 COG4555 NatA ABC-type Na+ tran 100.0 4.1E-33 8.8E-38 214.0 9.7 166 4-176 1-195 (245)
11 COG1135 AbcC ABC-type metal io 100.0 6.5E-33 1.4E-37 224.8 9.3 149 4-155 1-186 (339)
12 COG1131 CcmA ABC-type multidru 100.0 1.1E-32 2.5E-37 227.4 10.4 157 1-160 1-186 (293)
13 COG3638 ABC-type phosphate/pho 100.0 1.4E-32 3E-37 215.6 10.1 150 3-155 2-192 (258)
14 PF01583 APS_kinase: Adenylyls 100.0 9E-32 2E-36 201.8 13.5 152 29-181 1-152 (156)
15 COG1136 SalX ABC-type antimicr 100.0 2.3E-32 5E-37 215.7 10.5 150 4-156 1-188 (226)
16 COG1124 DppF ABC-type dipeptid 100.0 3.5E-32 7.5E-37 214.3 10.2 150 3-155 2-186 (252)
17 COG4152 ABC-type uncharacteriz 100.0 3.1E-32 6.8E-37 214.5 9.9 158 4-164 2-184 (300)
18 COG1127 Ttg2A ABC-type transpo 100.0 1.7E-32 3.6E-37 215.7 8.3 151 3-156 7-191 (263)
19 COG2884 FtsE Predicted ATPase 100.0 8.5E-32 1.8E-36 205.0 11.0 156 4-162 1-189 (223)
20 PRK13537 nodulation ABC transp 100.0 2.7E-32 5.8E-37 226.6 8.7 157 1-160 4-188 (306)
21 COG1118 CysA ABC-type sulfate/ 100.0 5.5E-32 1.2E-36 219.2 9.7 149 4-155 2-182 (345)
22 COG1137 YhbG ABC-type (unclass 100.0 9E-33 1.9E-37 211.9 3.3 154 4-160 4-189 (243)
23 PRK13536 nodulation factor exp 100.0 1.5E-31 3.2E-36 224.9 8.7 154 4-160 41-222 (340)
24 TIGR00960 3a0501s02 Type II (G 100.0 1.9E-31 4.1E-36 210.8 8.8 151 4-157 1-185 (216)
25 COG0410 LivF ABC-type branched 100.0 1.4E-31 3E-36 209.5 7.2 152 3-157 2-183 (237)
26 PRK11650 ugpC glycerol-3-phosp 100.0 3.8E-31 8.2E-36 223.6 9.3 151 1-155 1-179 (356)
27 TIGR02673 FtsE cell division A 100.0 4E-31 8.7E-36 208.6 8.9 150 4-156 1-183 (214)
28 cd03259 ABC_Carb_Solutes_like 100.0 7.1E-31 1.5E-35 207.2 9.9 149 5-156 1-176 (213)
29 cd03226 ABC_cobalt_CbiO_domain 100.0 6E-31 1.3E-35 206.5 9.2 152 6-160 1-176 (205)
30 cd03261 ABC_Org_Solvent_Resist 100.0 7.3E-31 1.6E-35 210.1 9.7 149 5-156 1-182 (235)
31 PRK11629 lolD lipoprotein tran 100.0 8.6E-31 1.9E-35 209.5 9.7 153 1-156 1-191 (233)
32 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 9.1E-31 2E-35 207.2 9.7 149 5-156 1-186 (218)
33 cd03293 ABC_NrtD_SsuB_transpor 100.0 1E-30 2.2E-35 207.3 9.5 148 5-156 1-177 (220)
34 cd03269 ABC_putative_ATPase Th 100.0 7.7E-31 1.7E-35 206.5 8.5 149 5-156 1-174 (210)
35 PRK11432 fbpC ferric transport 100.0 5.8E-31 1.3E-35 222.0 8.2 150 4-156 6-182 (351)
36 TIGR01288 nodI ATP-binding ABC 100.0 7.7E-31 1.7E-35 217.6 8.8 151 3-156 3-181 (303)
37 COG4608 AppF ABC-type oligopep 100.0 8.8E-31 1.9E-35 209.9 8.8 139 1-155 1-154 (268)
38 TIGR02315 ABC_phnC phosphonate 100.0 1.3E-30 2.9E-35 209.3 9.8 150 4-156 1-191 (243)
39 COG1117 PstB ABC-type phosphat 100.0 2.2E-30 4.7E-35 200.7 10.5 152 4-157 7-196 (253)
40 TIGR02314 ABC_MetN D-methionin 100.0 5.6E-31 1.2E-35 221.4 7.8 150 4-156 1-186 (343)
41 PRK09452 potA putrescine/sperm 100.0 1.1E-30 2.3E-35 222.1 9.3 152 1-155 11-189 (375)
42 cd03214 ABC_Iron-Siderophores_ 100.0 3E-30 6.5E-35 199.0 10.6 138 6-156 1-143 (180)
43 cd03296 ABC_CysA_sulfate_impor 100.0 1.5E-30 3.3E-35 208.8 9.3 150 4-156 2-182 (239)
44 cd03266 ABC_NatA_sodium_export 100.0 1.2E-30 2.7E-35 206.4 8.7 151 4-157 1-183 (218)
45 cd03258 ABC_MetN_methionine_tr 100.0 2.4E-30 5.3E-35 206.7 9.9 150 4-156 1-186 (233)
46 PRK10584 putative ABC transpor 100.0 2.3E-30 5.1E-35 206.2 9.8 152 2-156 4-192 (228)
47 TIGR03265 PhnT2 putative 2-ami 100.0 9.8E-31 2.1E-35 220.9 8.0 149 4-155 4-179 (353)
48 PRK13647 cbiO cobalt transport 100.0 1.4E-30 2.9E-35 213.3 8.6 153 1-156 1-184 (274)
49 cd03225 ABC_cobalt_CbiO_domain 100.0 2.6E-30 5.6E-35 203.6 9.9 148 6-156 1-180 (211)
50 cd03256 ABC_PhnC_transporter A 100.0 2.5E-30 5.4E-35 207.4 9.9 149 5-156 1-190 (241)
51 cd03235 ABC_Metallic_Cations A 100.0 2.4E-30 5.1E-35 204.2 9.6 147 6-156 1-178 (213)
52 PRK09536 btuD corrinoid ABC tr 100.0 1.7E-30 3.6E-35 222.4 9.3 152 3-157 2-186 (402)
53 cd03265 ABC_DrrA DrrA is the A 100.0 1.4E-30 3E-35 206.5 8.2 149 5-156 1-177 (220)
54 cd03268 ABC_BcrA_bacitracin_re 100.0 2.5E-30 5.4E-35 203.4 9.5 149 5-156 1-172 (208)
55 PRK11264 putative amino-acid A 100.0 2.5E-30 5.3E-35 208.7 9.7 152 1-156 1-190 (250)
56 PRK11153 metN DL-methionine tr 100.0 1.7E-30 3.8E-35 218.8 9.1 150 4-156 1-186 (343)
57 PRK11248 tauB taurine transpor 100.0 2.1E-30 4.6E-35 210.1 9.3 149 4-156 1-174 (255)
58 COG4598 HisP ABC-type histidin 100.0 3.6E-30 7.8E-35 195.1 9.7 149 4-155 6-197 (256)
59 PRK10851 sulfate/thiosulfate t 100.0 1.9E-30 4E-35 219.2 9.0 150 4-156 2-182 (353)
60 PRK11247 ssuB aliphatic sulfon 100.0 2.3E-30 5.1E-35 210.1 9.2 150 3-156 11-179 (257)
61 PRK11000 maltose/maltodextrin 100.0 2.1E-30 4.5E-35 220.2 9.3 152 1-156 1-179 (369)
62 PRK13538 cytochrome c biogenes 100.0 2.9E-30 6.3E-35 202.6 9.2 150 4-156 1-175 (204)
63 cd03301 ABC_MalK_N The N-termi 100.0 3.5E-30 7.7E-35 203.1 9.6 149 5-156 1-176 (213)
64 cd03263 ABC_subfamily_A The AB 100.0 3.8E-30 8.3E-35 203.8 9.7 149 5-156 1-179 (220)
65 PRK13539 cytochrome c biogenes 100.0 3.6E-30 7.9E-35 202.6 9.5 150 4-156 2-173 (207)
66 TIGR02211 LolD_lipo_ex lipopro 100.0 3.6E-30 7.9E-35 204.1 9.5 150 4-156 1-187 (221)
67 cd03292 ABC_FtsE_transporter F 100.0 2.8E-30 6.2E-35 203.7 8.7 153 5-160 1-186 (214)
68 PRK13540 cytochrome c biogenes 100.0 4.8E-30 1E-34 200.9 9.9 150 4-156 1-173 (200)
69 PRK10908 cell division protein 100.0 3.7E-30 8.1E-35 204.3 9.4 150 4-156 1-183 (222)
70 cd03262 ABC_HisP_GlnQ_permease 100.0 4.5E-30 9.8E-35 202.4 9.7 150 5-157 1-182 (213)
71 PRK11124 artP arginine transpo 100.0 3.1E-30 6.6E-35 207.3 8.8 150 4-156 2-187 (242)
72 TIGR03522 GldA_ABC_ATP gliding 100.0 3.5E-30 7.6E-35 213.4 9.3 150 4-156 2-179 (301)
73 cd03219 ABC_Mj1267_LivG_branch 100.0 3.7E-30 8.1E-35 205.9 9.1 149 5-156 1-189 (236)
74 PRK13633 cobalt transporter AT 100.0 4.6E-30 9.9E-35 210.7 9.6 153 1-156 1-190 (280)
75 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.6E-30 1E-34 205.6 9.4 150 4-156 1-178 (236)
76 PRK13638 cbiO cobalt transport 100.0 2E-30 4.3E-35 211.9 7.4 151 4-157 1-183 (271)
77 PRK13650 cbiO cobalt transport 100.0 4.9E-30 1.1E-34 210.5 9.6 153 1-156 1-186 (279)
78 PRK11607 potG putrescine trans 100.0 2.6E-30 5.6E-35 219.9 8.1 150 3-155 18-194 (377)
79 TIGR03608 L_ocin_972_ABC putat 100.0 6.3E-30 1.4E-34 200.6 9.7 147 7-156 1-180 (206)
80 cd03260 ABC_PstB_phosphate_tra 100.0 7.7E-30 1.7E-34 203.1 10.3 150 5-156 1-187 (227)
81 PRK14267 phosphate ABC transpo 100.0 6.8E-30 1.5E-34 206.6 10.1 154 1-156 1-195 (253)
82 PRK09493 glnQ glutamine ABC tr 100.0 3.9E-30 8.4E-35 206.5 8.6 150 4-156 1-182 (240)
83 COG0411 LivG ABC-type branched 100.0 3.1E-30 6.7E-35 203.4 7.7 152 3-157 3-196 (250)
84 PRK13636 cbiO cobalt transport 100.0 5.4E-30 1.2E-34 210.6 9.5 153 1-156 1-187 (283)
85 cd03216 ABC_Carb_Monos_I This 100.0 1.7E-30 3.8E-35 197.4 6.0 128 5-157 1-129 (163)
86 cd03231 ABC_CcmA_heme_exporter 100.0 5.3E-30 1.2E-34 200.8 8.8 149 5-156 1-171 (201)
87 TIGR03411 urea_trans_UrtD urea 100.0 8.7E-30 1.9E-34 204.6 10.1 150 4-156 2-189 (242)
88 PRK14242 phosphate transporter 100.0 1.2E-29 2.6E-34 205.1 11.0 152 3-156 5-195 (253)
89 PRK13635 cbiO cobalt transport 100.0 6.1E-30 1.3E-34 209.9 9.4 152 3-157 4-187 (279)
90 PRK09984 phosphonate/organopho 100.0 8E-30 1.7E-34 207.3 9.9 153 1-156 1-198 (262)
91 PRK10070 glycine betaine trans 100.0 7.4E-30 1.6E-34 218.2 10.1 153 1-156 1-210 (400)
92 cd03218 ABC_YhbG The ABC trans 100.0 5.3E-30 1.2E-34 204.5 8.6 149 5-156 1-179 (232)
93 cd03264 ABC_drug_resistance_li 100.0 7.5E-30 1.6E-34 201.1 9.1 149 5-157 1-177 (211)
94 PRK11831 putative ABC transpor 100.0 7.1E-30 1.5E-34 208.4 9.2 151 3-156 6-189 (269)
95 cd03224 ABC_TM1139_LivF_branch 100.0 8E-30 1.7E-34 202.2 9.2 149 5-156 1-178 (222)
96 PRK10247 putative ABC transpor 100.0 1.3E-29 2.7E-34 201.9 10.4 151 3-156 6-183 (225)
97 PRK14247 phosphate ABC transpo 100.0 1.2E-29 2.7E-34 204.7 10.5 151 4-156 3-192 (250)
98 PRK11231 fecE iron-dicitrate t 100.0 6.6E-30 1.4E-34 207.0 8.9 150 4-156 2-184 (255)
99 PRK13637 cbiO cobalt transport 100.0 6.1E-30 1.3E-34 210.7 8.5 150 4-156 2-190 (287)
100 PRK11614 livF leucine/isoleuci 100.0 5.1E-30 1.1E-34 205.4 7.7 155 3-160 4-187 (237)
101 PRK14250 phosphate ABC transpo 100.0 9.5E-30 2.1E-34 204.5 9.2 150 4-156 3-177 (241)
102 PRK10895 lipopolysaccharide AB 100.0 7.9E-30 1.7E-34 204.8 8.8 152 1-156 1-183 (241)
103 PRK11300 livG leucine/isoleuci 100.0 1.3E-29 2.7E-34 205.1 9.9 151 3-156 4-199 (255)
104 TIGR00972 3a0107s01c2 phosphat 100.0 1.3E-29 2.8E-34 204.3 9.8 150 4-156 1-190 (247)
105 PRK09544 znuC high-affinity zi 100.0 1.7E-29 3.6E-34 204.4 10.4 153 1-156 1-166 (251)
106 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.6E-29 3.4E-34 203.2 10.1 149 5-156 1-181 (242)
107 TIGR01189 ccmA heme ABC export 100.0 1.1E-29 2.4E-34 198.5 8.9 149 5-156 1-173 (198)
108 COG1122 CbiO ABC-type cobalt t 100.0 3.7E-30 8.1E-35 205.6 6.3 151 3-159 2-187 (235)
109 PRK14241 phosphate transporter 100.0 1.9E-29 4.1E-34 204.6 10.4 154 1-156 1-194 (258)
110 PRK10762 D-ribose transporter 100.0 7.7E-30 1.7E-34 224.5 8.8 153 1-156 1-187 (501)
111 PRK11701 phnK phosphonate C-P 100.0 9.4E-30 2E-34 206.4 8.4 152 2-156 4-197 (258)
112 PRK14251 phosphate ABC transpo 100.0 2E-29 4.4E-34 203.5 10.2 154 1-156 1-193 (251)
113 PRK10619 histidine/lysine/argi 100.0 9.2E-30 2E-34 206.4 8.1 157 3-162 4-204 (257)
114 PRK13644 cbiO cobalt transport 100.0 1E-29 2.2E-34 208.1 8.4 155 4-161 1-187 (274)
115 PRK13652 cbiO cobalt transport 100.0 1.6E-29 3.5E-34 207.2 9.6 152 2-156 1-183 (277)
116 TIGR03258 PhnT 2-aminoethylpho 100.0 8.1E-30 1.8E-34 215.8 7.9 149 5-156 6-183 (362)
117 TIGR01188 drrA daunorubicin re 100.0 1.4E-29 3.1E-34 209.8 9.2 143 12-157 1-171 (302)
118 PRK13641 cbiO cobalt transport 100.0 1.3E-29 2.9E-34 208.7 8.7 150 4-156 2-191 (287)
119 PRK10575 iron-hydroxamate tran 100.0 1.9E-29 4.1E-34 205.5 9.4 151 3-156 10-193 (265)
120 TIGR03740 galliderm_ABC gallid 100.0 1.9E-29 4.2E-34 200.4 9.2 153 5-160 1-174 (223)
121 PRK11022 dppD dipeptide transp 100.0 1.9E-29 4.1E-34 211.1 9.6 151 4-156 3-199 (326)
122 PRK13632 cbiO cobalt transport 100.0 2.4E-29 5.3E-34 205.5 9.7 151 3-156 6-188 (271)
123 cd03257 ABC_NikE_OppD_transpor 100.0 1.4E-29 3E-34 201.5 8.0 150 4-156 1-191 (228)
124 cd03229 ABC_Class3 This class 100.0 2.2E-30 4.8E-35 199.4 3.2 139 5-157 1-147 (178)
125 PRK10253 iron-enterobactin tra 100.0 2.3E-29 4.9E-34 205.0 9.4 150 4-156 7-189 (265)
126 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-29 2.7E-34 194.3 7.3 141 5-160 1-145 (173)
127 PRK14235 phosphate transporter 100.0 4E-29 8.6E-34 203.8 10.6 152 3-156 18-209 (267)
128 PRK14249 phosphate ABC transpo 100.0 3.4E-29 7.5E-34 202.3 10.0 153 1-156 1-193 (251)
129 PRK13646 cbiO cobalt transport 100.0 2.6E-29 5.6E-34 206.9 9.4 150 4-156 2-191 (286)
130 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-29 3E-34 223.4 8.3 153 1-156 8-186 (510)
131 PRK13541 cytochrome c biogenes 100.0 4.3E-29 9.3E-34 194.7 10.1 148 4-155 1-168 (195)
132 cd03228 ABCC_MRP_Like The MRP 100.0 1.4E-29 3E-34 193.7 7.2 136 5-157 1-143 (171)
133 PRK09700 D-allose transporter 100.0 1.7E-29 3.7E-34 222.7 8.8 153 1-156 2-191 (510)
134 PRK14270 phosphate ABC transpo 100.0 3.8E-29 8.3E-34 202.0 10.0 154 1-156 1-193 (251)
135 cd03246 ABCC_Protease_Secretio 100.0 9.5E-30 2.1E-34 195.0 6.1 139 5-160 1-146 (173)
136 cd03247 ABCC_cytochrome_bd The 100.0 9.7E-30 2.1E-34 195.7 6.2 139 5-157 1-145 (178)
137 PRK14256 phosphate ABC transpo 100.0 5E-29 1.1E-33 201.4 10.6 154 1-156 1-194 (252)
138 PRK13543 cytochrome c biogenes 100.0 3.7E-29 8E-34 197.8 9.4 151 3-156 10-183 (214)
139 TIGR03005 ectoine_ehuA ectoine 100.0 3.4E-29 7.3E-34 202.5 9.3 149 5-156 1-192 (252)
140 PRK14273 phosphate ABC transpo 100.0 5.1E-29 1.1E-33 201.6 10.3 153 3-157 6-197 (254)
141 PRK13648 cbiO cobalt transport 100.0 4E-29 8.6E-34 204.0 9.7 151 3-156 6-188 (269)
142 PRK13642 cbiO cobalt transport 100.0 3.8E-29 8.3E-34 205.0 9.6 153 1-156 1-186 (277)
143 TIGR03410 urea_trans_UrtE urea 100.0 2.4E-29 5.1E-34 200.7 8.1 149 5-156 1-177 (230)
144 COG4525 TauB ABC-type taurine 100.0 8.4E-29 1.8E-33 189.7 10.7 151 2-155 1-177 (259)
145 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.8E-29 8.3E-34 204.2 9.4 148 6-156 26-206 (269)
146 COG4604 CeuD ABC-type enteroch 100.0 2.6E-29 5.7E-34 192.6 7.8 149 4-155 1-180 (252)
147 PRK14259 phosphate ABC transpo 100.0 4.7E-29 1E-33 203.7 9.8 151 4-156 13-200 (269)
148 TIGR01978 sufC FeS assembly AT 100.0 4.8E-29 1E-33 200.2 9.7 151 5-157 1-191 (243)
149 PRK15112 antimicrobial peptide 100.0 3E-29 6.5E-34 204.6 8.6 152 2-156 2-195 (267)
150 PRK13549 xylose transporter AT 100.0 2E-29 4.4E-34 222.1 8.0 153 2-156 3-189 (506)
151 PRK10938 putative molybdenum t 100.0 4.1E-29 8.9E-34 219.3 9.9 152 1-156 1-181 (490)
152 cd03215 ABC_Carb_Monos_II This 100.0 1.5E-29 3.2E-34 195.4 6.2 138 3-156 3-150 (182)
153 PRK10744 pstB phosphate transp 100.0 5.7E-29 1.2E-33 202.1 9.9 152 4-157 13-203 (260)
154 PRK13548 hmuV hemin importer A 100.0 5.2E-29 1.1E-33 202.2 9.6 150 4-156 2-186 (258)
155 PRK14268 phosphate ABC transpo 100.0 5.9E-29 1.3E-33 201.8 9.8 152 3-156 11-200 (258)
156 cd03232 ABC_PDR_domain2 The pl 100.0 2.8E-29 6.2E-34 195.4 7.7 142 4-160 3-158 (192)
157 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.6E-29 1.2E-33 198.1 9.5 152 5-160 23-192 (224)
158 PRK14248 phosphate ABC transpo 100.0 8.5E-29 1.8E-33 201.9 10.7 152 3-156 20-210 (268)
159 PRK13634 cbiO cobalt transport 100.0 2.6E-29 5.7E-34 207.2 7.8 150 4-156 2-191 (290)
160 PRK14237 phosphate transporter 100.0 8E-29 1.7E-33 202.0 10.4 152 3-156 19-209 (267)
161 TIGR02323 CP_lyasePhnK phospho 100.0 6.2E-29 1.3E-33 200.9 9.6 151 3-156 2-194 (253)
162 PRK15093 antimicrobial peptide 100.0 6.3E-29 1.4E-33 208.3 10.0 152 3-156 2-204 (330)
163 PRK13643 cbiO cobalt transport 100.0 2.6E-29 5.7E-34 207.0 7.5 155 4-161 1-195 (288)
164 PRK14269 phosphate ABC transpo 100.0 8.2E-29 1.8E-33 199.6 10.1 152 4-157 2-189 (246)
165 PRK11308 dppF dipeptide transp 100.0 3.2E-29 6.9E-34 209.8 7.9 151 3-156 4-200 (327)
166 TIGR02868 CydC thiol reductant 100.0 3.4E-29 7.3E-34 221.6 8.5 148 5-155 335-515 (529)
167 PRK13631 cbiO cobalt transport 100.0 3.1E-29 6.8E-34 209.3 7.8 151 3-156 20-222 (320)
168 PRK15056 manganese/iron transp 100.0 4.8E-29 1E-33 203.8 8.7 150 4-156 6-188 (272)
169 PRK13649 cbiO cobalt transport 100.0 3.4E-29 7.3E-34 205.5 7.7 150 4-156 2-191 (280)
170 PRK14245 phosphate ABC transpo 100.0 1.1E-28 2.4E-33 199.2 10.5 152 3-156 2-192 (250)
171 PRK13639 cbiO cobalt transport 100.0 4.9E-29 1.1E-33 204.1 8.6 150 4-156 1-183 (275)
172 COG1129 MglA ABC-type sugar tr 100.0 4.2E-29 9.1E-34 215.7 8.4 157 3-162 7-197 (500)
173 cd03233 ABC_PDR_domain1 The pl 100.0 2.3E-29 5.1E-34 197.4 6.3 144 4-156 3-164 (202)
174 PRK14274 phosphate ABC transpo 100.0 1.2E-28 2.6E-33 200.0 10.7 152 3-156 11-201 (259)
175 COG2274 SunT ABC-type bacterio 100.0 3.7E-29 8.1E-34 226.0 8.5 148 5-155 472-654 (709)
176 TIGR03873 F420-0_ABC_ATP propo 100.0 6.5E-29 1.4E-33 201.3 9.0 150 5-157 2-184 (256)
177 TIGR02769 nickel_nikE nickel i 100.0 8.3E-29 1.8E-33 201.7 9.5 150 4-156 2-196 (265)
178 COG3840 ThiQ ABC-type thiamine 100.0 2.3E-28 5E-33 185.3 11.1 144 4-155 1-174 (231)
179 PRK14254 phosphate ABC transpo 100.0 9.7E-29 2.1E-33 203.4 9.9 152 3-156 38-226 (285)
180 PRK13651 cobalt transporter AT 100.0 2.9E-29 6.3E-34 208.2 6.8 151 4-157 2-212 (305)
181 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4E-29 8.6E-34 186.4 6.8 115 5-156 1-116 (144)
182 PRK15079 oligopeptide ABC tran 100.0 5.2E-29 1.1E-33 208.8 8.1 151 3-156 7-207 (331)
183 PRK10418 nikD nickel transport 100.0 6.9E-29 1.5E-33 201.0 8.6 152 1-156 1-186 (254)
184 cd03223 ABCD_peroxisomal_ALDP 100.0 1.2E-28 2.6E-33 187.8 9.4 135 5-156 1-137 (166)
185 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.1E-28 2.3E-33 194.4 9.4 147 5-156 1-174 (211)
186 PRK14272 phosphate ABC transpo 100.0 1.4E-28 2.9E-33 198.8 10.2 155 1-157 1-195 (252)
187 cd03213 ABCG_EPDR ABCG transpo 100.0 7.2E-29 1.6E-33 193.5 8.1 151 4-162 3-163 (194)
188 PRK14240 phosphate transporter 100.0 1.7E-28 3.7E-33 198.1 10.5 153 1-156 1-192 (250)
189 cd03245 ABCC_bacteriocin_expor 100.0 8.4E-29 1.8E-33 196.2 8.3 149 5-156 3-186 (220)
190 COG3845 ABC-type uncharacteriz 100.0 1.1E-28 2.4E-33 210.2 9.6 159 1-162 1-192 (501)
191 COG1119 ModF ABC-type molybden 100.0 2.2E-28 4.8E-33 193.0 10.5 154 3-159 30-220 (257)
192 PRK09473 oppD oligopeptide tra 100.0 7.8E-29 1.7E-33 207.7 8.4 151 3-156 11-207 (330)
193 PRK14243 phosphate transporter 100.0 2.3E-28 5E-33 199.0 10.8 152 3-156 9-197 (264)
194 PRK13645 cbiO cobalt transport 100.0 6.8E-29 1.5E-33 204.6 7.6 150 4-156 6-196 (289)
195 PRK14239 phosphate transporter 100.0 2.1E-28 4.5E-33 197.7 10.3 152 3-156 4-194 (252)
196 TIGR02982 heterocyst_DevA ABC 100.0 1.4E-28 3.1E-33 195.1 9.1 150 5-157 2-188 (220)
197 PRK14262 phosphate ABC transpo 100.0 1.4E-28 3.1E-33 198.5 9.1 151 4-156 3-192 (250)
198 PRK14253 phosphate ABC transpo 100.0 1.7E-28 3.8E-33 197.9 9.4 153 1-156 1-191 (249)
199 TIGR01166 cbiO cobalt transpor 100.0 8.9E-29 1.9E-33 192.1 7.4 140 14-156 2-173 (190)
200 TIGR01277 thiQ thiamine ABC tr 100.0 2.3E-28 5E-33 193.0 9.8 148 5-157 1-175 (213)
201 KOG0058 Peptide exporter, ABC 100.0 1.9E-28 4.2E-33 216.6 10.3 148 4-154 465-648 (716)
202 cd03300 ABC_PotA_N PotA is an 100.0 2.6E-28 5.6E-33 195.1 10.1 149 5-156 1-176 (232)
203 TIGR01186 proV glycine betaine 100.0 1.7E-28 3.6E-33 207.6 9.4 142 12-156 1-175 (363)
204 PRK10419 nikE nickel transport 100.0 2.1E-28 4.5E-33 199.7 9.7 152 1-156 1-197 (268)
205 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-28 3.1E-33 195.9 8.4 150 5-157 3-186 (229)
206 PRK11144 modC molybdate transp 100.0 1.8E-28 3.9E-33 207.2 9.5 147 4-156 1-174 (352)
207 COG0444 DppD ABC-type dipeptid 100.0 1.9E-28 4.2E-33 200.3 9.3 150 4-155 1-198 (316)
208 PRK13547 hmuV hemin importer A 100.0 1.9E-28 4.1E-33 200.4 9.2 150 4-156 1-200 (272)
209 PRK09580 sufC cysteine desulfu 100.0 1.8E-28 3.9E-33 197.5 8.9 151 4-156 1-191 (248)
210 PRK13640 cbiO cobalt transport 100.0 1.4E-28 2.9E-33 202.2 8.4 151 3-156 4-189 (282)
211 TIGR00968 3a0106s01 sulfate AB 100.0 2.4E-28 5.1E-33 196.0 9.5 150 5-157 1-177 (237)
212 TIGR02324 CP_lyasePhnL phospho 100.0 1.5E-28 3.2E-33 195.3 8.2 151 4-157 1-196 (224)
213 cd03252 ABCC_Hemolysin The ABC 100.0 2E-28 4.4E-33 196.1 9.0 150 5-157 1-185 (237)
214 cd03251 ABCC_MsbA MsbA is an e 100.0 2.4E-28 5.1E-33 195.3 9.3 150 5-157 1-185 (234)
215 cd03248 ABCC_TAP TAP, the Tran 100.0 2.3E-28 5E-33 194.5 9.1 151 3-156 10-196 (226)
216 PRK10771 thiQ thiamine transpo 100.0 2.4E-28 5.1E-33 195.3 9.1 148 4-156 1-175 (232)
217 PRK14261 phosphate ABC transpo 100.0 2.5E-28 5.4E-33 197.5 9.2 153 2-156 4-195 (253)
218 COG1123 ATPase components of v 100.0 1.3E-28 2.9E-33 214.0 8.1 150 3-155 279-474 (539)
219 cd03244 ABCC_MRP_domain2 Domai 100.0 2.5E-28 5.3E-33 193.6 8.8 150 5-157 3-186 (221)
220 PRK14271 phosphate ABC transpo 100.0 2.3E-28 5E-33 200.3 8.8 152 3-156 20-209 (276)
221 PRK14255 phosphate ABC transpo 100.0 4E-28 8.8E-33 196.1 10.1 152 3-156 4-194 (252)
222 PRK14265 phosphate ABC transpo 100.0 4E-28 8.6E-33 198.7 10.0 151 4-156 20-207 (274)
223 COG4619 ABC-type uncharacteriz 100.0 8E-28 1.7E-32 180.4 10.7 149 4-155 3-178 (223)
224 PRK11288 araG L-arabinose tran 100.0 1.7E-28 3.7E-33 215.9 8.3 151 3-156 3-186 (501)
225 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.4E-28 5.2E-33 191.3 8.1 143 5-156 1-150 (200)
226 PRK14236 phosphate transporter 100.0 4.8E-28 1E-32 198.0 10.1 151 4-156 25-214 (272)
227 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4E-28 8.7E-33 194.5 9.4 153 5-161 1-189 (238)
228 COG1123 ATPase components of v 99.9 2.6E-28 5.6E-33 212.2 8.7 152 2-155 3-199 (539)
229 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.4E-28 5.1E-33 222.1 8.9 149 5-156 452-634 (686)
230 PRK14260 phosphate ABC transpo 99.9 6.2E-28 1.4E-32 195.9 10.4 151 4-156 7-196 (259)
231 PRK14275 phosphate ABC transpo 99.9 3.4E-28 7.4E-33 200.2 8.9 151 4-156 39-228 (286)
232 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.4E-28 5.3E-33 192.0 7.6 150 4-156 6-171 (207)
233 PRK14244 phosphate ABC transpo 99.9 7.2E-28 1.6E-32 194.6 10.4 150 5-156 6-195 (251)
234 PRK14238 phosphate transporter 99.9 4.9E-28 1.1E-32 197.8 9.5 151 4-156 24-213 (271)
235 cd03297 ABC_ModC_molybdenum_tr 99.9 5.9E-28 1.3E-32 190.7 9.6 145 5-156 2-177 (214)
236 PRK14264 phosphate ABC transpo 99.9 7.4E-28 1.6E-32 199.9 10.6 152 3-156 44-246 (305)
237 CHL00131 ycf16 sulfate ABC tra 99.9 4.8E-28 1.1E-32 195.5 9.2 156 3-160 6-201 (252)
238 KOG0057 Mitochondrial Fe/S clu 99.9 7.5E-28 1.6E-32 207.1 10.3 153 5-162 352-538 (591)
239 cd03299 ABC_ModC_like Archeal 99.9 7.2E-28 1.6E-32 193.0 9.6 148 5-156 1-175 (235)
240 cd03253 ABCC_ATM1_transporter 99.9 8.6E-28 1.9E-32 192.2 9.8 150 5-157 1-184 (236)
241 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 3.7E-28 8E-33 221.6 8.5 148 5-155 478-660 (710)
242 COG4559 ABC-type hemin transpo 99.9 1E-27 2.3E-32 185.6 9.5 149 4-155 1-186 (259)
243 cd03250 ABCC_MRP_domain1 Domai 99.9 6.1E-28 1.3E-32 189.3 8.4 148 5-156 1-174 (204)
244 PRK14258 phosphate ABC transpo 99.9 1.2E-27 2.7E-32 194.4 10.5 150 4-156 7-196 (261)
245 cd03222 ABC_RNaseL_inhibitor T 99.9 4.4E-28 9.6E-33 186.5 7.4 113 8-156 4-117 (177)
246 PRK14266 phosphate ABC transpo 99.9 1.4E-27 3.1E-32 192.7 10.6 151 4-156 3-192 (250)
247 PRK15134 microcin C ABC transp 99.9 6.8E-28 1.5E-32 213.4 9.3 152 3-156 4-202 (529)
248 TIGR01193 bacteriocin_ABC ABC- 99.9 7.4E-28 1.6E-32 219.6 9.0 148 5-155 474-656 (708)
249 PRK11176 lipid transporter ATP 99.9 1E-27 2.2E-32 214.3 9.6 149 5-156 342-526 (582)
250 TIGR02142 modC_ABC molybdenum 99.9 1.1E-27 2.3E-32 202.7 9.2 143 9-156 4-177 (354)
251 PRK14263 phosphate ABC transpo 99.9 1.8E-27 3.9E-32 193.6 10.2 152 4-157 8-196 (261)
252 cd03267 ABC_NatA_like Similar 99.9 8.5E-28 1.8E-32 192.7 8.0 141 13-156 30-199 (236)
253 PRK10790 putative multidrug tr 99.9 6.6E-28 1.4E-32 216.0 8.2 149 5-156 341-522 (592)
254 PRK14252 phosphate ABC transpo 99.9 1.8E-27 4E-32 193.8 10.0 151 4-156 16-207 (265)
255 TIGR00958 3a01208 Conjugate Tr 99.9 1.3E-27 2.7E-32 218.1 9.5 169 4-179 478-684 (711)
256 PRK11160 cysteine/glutathione 99.9 1E-27 2.2E-32 214.1 8.7 150 4-156 338-521 (574)
257 PRK11819 putative ABC transpor 99.9 3E-27 6.5E-32 210.4 11.5 150 3-156 5-209 (556)
258 cd03234 ABCG_White The White s 99.9 1.4E-27 3E-32 190.2 8.3 150 4-156 3-189 (226)
259 TIGR02633 xylG D-xylose ABC tr 99.9 1E-27 2.2E-32 210.9 8.4 151 4-156 1-187 (500)
260 PRK10982 galactose/methyl gala 99.9 1.1E-27 2.5E-32 210.2 8.6 147 7-156 1-180 (491)
261 PRK14246 phosphate ABC transpo 99.9 1.7E-27 3.7E-32 193.3 8.9 151 3-156 9-199 (257)
262 PRK09700 D-allose transporter 99.9 1.1E-27 2.4E-32 211.1 8.5 152 4-160 265-459 (510)
263 TIGR02857 CydD thiol reductant 99.9 1.6E-27 3.5E-32 210.9 9.3 150 4-156 320-504 (529)
264 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.8E-27 3.9E-32 194.9 8.8 148 5-156 3-184 (275)
265 PRK11174 cysteine/glutathione 99.9 1.3E-27 2.8E-32 213.9 8.6 148 5-156 350-531 (588)
266 COG1132 MdlB ABC-type multidru 99.9 2.3E-27 5.1E-32 211.5 10.0 148 5-155 329-510 (567)
267 PRK13549 xylose transporter AT 99.9 1.4E-27 3E-32 210.5 8.5 156 3-160 258-455 (506)
268 TIGR02633 xylG D-xylose ABC tr 99.9 1.4E-27 3.1E-32 210.0 8.1 155 4-160 257-453 (500)
269 PRK10938 putative molybdenum t 99.9 2.5E-27 5.5E-32 207.9 9.6 152 3-157 259-448 (490)
270 cd03288 ABCC_SUR2 The SUR doma 99.9 3E-27 6.6E-32 191.7 9.3 150 4-156 19-202 (257)
271 PRK10261 glutathione transport 99.9 1.6E-27 3.4E-32 214.6 8.3 151 3-156 312-509 (623)
272 COG4175 ProV ABC-type proline/ 99.9 6E-27 1.3E-31 190.5 10.8 150 1-153 1-207 (386)
273 TIGR03375 type_I_sec_LssB type 99.9 2.1E-27 4.6E-32 216.2 8.8 149 5-156 464-647 (694)
274 TIGR03269 met_CoM_red_A2 methy 99.9 3.7E-27 8.1E-32 208.3 10.1 150 5-156 1-214 (520)
275 PRK15064 ABC transporter ATP-b 99.9 5.6E-27 1.2E-31 207.6 11.2 148 4-155 1-200 (530)
276 PRK14257 phosphate ABC transpo 99.9 4.4E-27 9.4E-32 197.0 9.8 151 4-156 80-271 (329)
277 PRK10261 glutathione transport 99.9 3.7E-27 8E-32 212.2 9.8 150 3-155 11-213 (623)
278 TIGR02203 MsbA_lipidA lipid A 99.9 2.9E-27 6.3E-32 210.8 9.0 149 5-156 331-515 (571)
279 TIGR03269 met_CoM_red_A2 methy 99.9 3.9E-27 8.5E-32 208.2 9.6 151 3-156 278-473 (520)
280 cd03290 ABCC_SUR1_N The SUR do 99.9 1E-26 2.2E-31 184.2 10.7 143 6-151 2-181 (218)
281 KOG0055 Multidrug/pheromone ex 99.9 6.9E-27 1.5E-31 216.6 10.6 149 4-155 350-534 (1228)
282 PRK13657 cyclic beta-1,2-gluca 99.9 3.7E-27 8.1E-32 211.0 8.6 149 5-156 335-517 (588)
283 PRK15134 microcin C ABC transp 99.9 7.2E-27 1.6E-31 206.9 10.0 150 3-156 274-471 (529)
284 PRK10636 putative ABC transpor 99.9 1.1E-26 2.3E-31 209.7 11.0 150 4-156 1-195 (638)
285 PRK11147 ABC transporter ATPas 99.9 1E-26 2.3E-31 209.7 10.8 150 4-156 3-202 (635)
286 TIGR01842 type_I_sec_PrtD type 99.9 7.1E-27 1.5E-31 207.5 9.3 170 4-177 316-522 (544)
287 COG4778 PhnL ABC-type phosphon 99.9 9.5E-27 2E-31 175.0 8.5 164 1-167 1-209 (235)
288 COG4133 CcmA ABC-type transpor 99.9 4.2E-26 9.2E-31 173.6 12.1 167 4-174 2-194 (209)
289 PRK10522 multidrug transporter 99.9 7.3E-27 1.6E-31 207.6 9.3 148 4-154 322-493 (547)
290 cd00267 ABC_ATPase ABC (ATP-bi 99.9 5.8E-27 1.3E-31 176.7 6.9 124 7-156 2-126 (157)
291 TIGR03415 ABC_choXWV_ATP choli 99.9 1.5E-26 3.3E-31 196.7 10.1 146 8-156 28-210 (382)
292 TIGR02204 MsbA_rel ABC transpo 99.9 1.3E-26 2.9E-31 206.7 10.2 149 5-156 338-522 (576)
293 PRK15064 ABC transporter ATP-b 99.9 1.9E-26 4.2E-31 204.2 10.9 151 3-156 318-484 (530)
294 COG4987 CydC ABC-type transpor 99.9 3.6E-26 7.7E-31 196.6 12.1 170 4-177 336-541 (573)
295 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.8E-26 6.1E-31 204.1 11.4 150 3-156 3-207 (552)
296 PTZ00265 multidrug resistance 99.9 1.4E-26 3.1E-31 223.3 9.9 149 5-156 1166-1404(1466)
297 TIGR01846 type_I_sec_HlyB type 99.9 1.3E-26 2.9E-31 210.9 9.2 149 5-156 456-639 (694)
298 TIGR01184 ntrCD nitrate transp 99.9 2.1E-26 4.5E-31 184.0 9.2 133 20-156 1-160 (230)
299 COG4988 CydD ABC-type transpor 99.9 1.9E-26 4.2E-31 200.2 9.7 159 6-167 322-514 (559)
300 COG4161 ArtP ABC-type arginine 99.9 6.1E-26 1.3E-30 169.6 11.0 155 5-162 3-193 (242)
301 TIGR01192 chvA glucan exporter 99.9 1.3E-26 2.8E-31 207.4 8.9 149 5-156 335-517 (585)
302 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.9E-26 4.1E-31 205.2 9.3 146 5-153 338-513 (555)
303 PLN03211 ABC transporter G-25; 99.9 2.5E-26 5.4E-31 207.6 9.5 154 6-162 70-258 (659)
304 PRK10982 galactose/methyl gala 99.9 2.3E-26 5E-31 202.0 8.8 152 4-160 250-441 (491)
305 PRK10789 putative multidrug tr 99.9 2.4E-26 5.1E-31 205.2 8.8 149 5-156 314-497 (569)
306 PRK13545 tagH teichoic acids e 99.9 4.6E-26 1E-30 198.8 10.3 148 4-156 21-189 (549)
307 TIGR01257 rim_protein retinal- 99.9 2.4E-26 5.1E-31 224.4 8.4 150 4-156 1937-2116(2272)
308 COG4107 PhnK ABC-type phosphon 99.9 1.8E-25 4E-30 168.8 11.2 150 3-155 5-196 (258)
309 KOG0056 Heavy metal exporter H 99.9 1.6E-25 3.5E-30 191.0 12.2 178 5-187 538-751 (790)
310 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 7.4E-26 1.6E-30 201.4 10.3 150 3-156 321-489 (552)
311 PRK03695 vitamin B12-transport 99.9 3.4E-26 7.4E-31 184.7 7.3 144 6-157 2-180 (248)
312 PRK11819 putative ABC transpor 99.9 8.6E-26 1.9E-30 201.1 10.4 149 4-156 324-491 (556)
313 TIGR02770 nickel_nikD nickel i 99.9 5.9E-26 1.3E-30 181.3 8.0 136 19-157 1-172 (230)
314 PRK10762 D-ribose transporter 99.9 6.3E-26 1.4E-30 199.7 8.9 145 4-156 257-441 (501)
315 PRK11147 ABC transporter ATPas 99.9 1.1E-25 2.4E-30 203.1 10.5 149 4-156 319-486 (635)
316 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.7E-25 3.8E-30 180.5 10.4 136 17-156 7-161 (246)
317 cd03236 ABC_RNaseL_inhibitor_d 99.9 2.2E-25 4.8E-30 180.8 11.1 145 8-156 4-185 (255)
318 COG4172 ABC-type uncharacteriz 99.9 6.9E-26 1.5E-30 189.5 8.3 148 4-155 276-471 (534)
319 PRK15439 autoinducer 2 ABC tra 99.9 8.7E-26 1.9E-30 199.2 9.3 145 4-156 268-449 (510)
320 COG4618 ArpD ABC-type protease 99.9 1.4E-25 3E-30 191.9 10.1 156 4-162 334-524 (580)
321 PRK10535 macrolide transporter 99.9 9.3E-26 2E-30 203.9 9.4 157 1-160 1-194 (648)
322 PRK10636 putative ABC transpor 99.9 1.7E-25 3.7E-30 201.9 10.9 149 4-156 312-476 (638)
323 KOG4238 Bifunctional ATP sulfu 99.9 1.5E-25 3.2E-30 185.0 9.5 154 28-182 48-203 (627)
324 KOG0055 Multidrug/pheromone ex 99.9 2.3E-25 5.1E-30 206.6 11.7 148 5-155 988-1171(1228)
325 PTZ00265 multidrug resistance 99.9 1.4E-25 3E-30 216.5 10.5 149 5-156 383-625 (1466)
326 COG0396 sufC Cysteine desulfur 99.9 4.7E-25 1E-29 172.6 11.4 155 4-160 3-194 (251)
327 PRK13546 teichoic acids export 99.9 3.3E-25 7.2E-30 180.6 10.6 134 18-156 38-189 (264)
328 TIGR01257 rim_protein retinal- 99.9 1.2E-25 2.5E-30 219.6 9.2 151 4-157 928-1108(2272)
329 PRK13409 putative ATPase RIL; 99.9 2.7E-25 5.8E-30 198.7 10.8 148 3-156 339-499 (590)
330 TIGR00954 3a01203 Peroxysomal 99.9 2.5E-25 5.4E-30 201.4 10.6 149 4-155 451-627 (659)
331 PRK11288 araG L-arabinose tran 99.9 1.7E-25 3.7E-30 196.9 8.4 146 4-156 257-442 (501)
332 COG4586 ABC-type uncharacteriz 99.9 3.1E-25 6.7E-30 177.4 8.8 136 17-155 37-201 (325)
333 COG4181 Predicted ABC-type tra 99.9 3E-25 6.5E-30 167.0 8.1 147 4-153 6-189 (228)
334 PLN03130 ABC transporter C fam 99.9 1.5E-25 3.1E-30 218.1 8.0 155 4-162 1237-1425(1622)
335 PLN03232 ABC transporter C fam 99.9 1.3E-25 2.9E-30 217.7 7.0 154 5-162 1235-1422(1495)
336 COG0488 Uup ATPase components 99.9 1.1E-24 2.4E-29 191.5 11.2 148 4-155 3-198 (530)
337 PRK15177 Vi polysaccharide exp 99.9 9.2E-25 2E-29 172.7 9.7 133 18-155 1-149 (213)
338 cd03238 ABC_UvrA The excision 99.9 9.5E-25 2.1E-29 167.8 9.5 121 16-156 7-135 (176)
339 TIGR03771 anch_rpt_ABC anchore 99.9 1.1E-24 2.3E-29 173.3 9.5 129 25-157 1-160 (223)
340 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.1E-24 2.3E-29 179.1 9.7 143 4-153 39-202 (282)
341 COG4172 ABC-type uncharacteriz 99.9 2.3E-24 5E-29 180.4 11.7 151 3-155 5-202 (534)
342 PRK13409 putative ATPase RIL; 99.9 9.3E-25 2E-29 195.2 10.0 144 9-156 78-258 (590)
343 PTZ00243 ABC transporter; Prov 99.9 4.7E-25 1E-29 214.1 8.5 154 5-162 1309-1497(1560)
344 TIGR00957 MRP_assoc_pro multi 99.9 5.2E-25 1.1E-29 213.8 8.4 154 5-162 1285-1472(1522)
345 PLN03073 ABC transporter F fam 99.9 2E-24 4.4E-29 196.5 11.6 149 3-155 507-672 (718)
346 PLN03073 ABC transporter F fam 99.9 9.6E-25 2.1E-29 198.6 8.7 150 4-155 177-389 (718)
347 TIGR00956 3a01205 Pleiotropic 99.9 1E-24 2.3E-29 210.1 8.8 157 4-162 759-954 (1394)
348 COG4167 SapF ABC-type antimicr 99.9 3.8E-24 8.3E-29 162.8 9.5 152 1-155 1-194 (267)
349 PF00005 ABC_tran: ABC transpo 99.9 1.1E-24 2.5E-29 160.1 5.9 117 20-139 1-137 (137)
350 COG4674 Uncharacterized ABC-ty 99.9 8.6E-25 1.9E-29 167.6 4.2 150 3-155 4-192 (249)
351 TIGR01271 CFTR_protein cystic 99.9 3.5E-24 7.6E-29 207.6 8.7 153 5-162 1218-1404(1490)
352 COG1101 PhnK ABC-type uncharac 99.9 5.1E-23 1.1E-27 159.9 11.0 148 4-154 1-192 (263)
353 TIGR00955 3a01204 The Eye Pigm 99.9 2.6E-23 5.5E-28 187.2 9.8 145 15-162 36-218 (617)
354 COG5265 ATM1 ABC-type transpor 99.9 7.2E-23 1.6E-27 172.0 11.5 180 5-188 263-477 (497)
355 PLN03130 ABC transporter C fam 99.9 9.1E-23 2E-27 198.7 9.9 156 4-162 614-792 (1622)
356 COG4148 ModC ABC-type molybdat 99.9 8.9E-23 1.9E-27 164.0 8.0 142 9-155 5-173 (352)
357 COG4136 ABC-type uncharacteriz 99.9 1.9E-22 4.2E-27 149.1 8.8 152 4-158 2-186 (213)
358 TIGR00957 MRP_assoc_pro multi 99.9 1.1E-22 2.3E-27 197.8 9.5 148 4-154 636-804 (1522)
359 PLN03140 ABC transporter G fam 99.9 7E-23 1.5E-27 197.6 6.7 154 5-161 868-1070(1470)
360 PLN03232 ABC transporter C fam 99.9 1.8E-22 3.8E-27 196.0 8.9 155 4-162 614-792 (1495)
361 COG0488 Uup ATPase components 99.9 9.8E-22 2.1E-26 172.9 10.9 148 4-155 321-484 (530)
362 TIGR01187 potA spermidine/putr 99.9 6E-22 1.3E-26 165.8 7.4 119 35-156 1-146 (325)
363 PRK03846 adenylylsulfate kinas 99.9 3.5E-20 7.6E-25 144.9 16.8 172 10-182 4-175 (198)
364 TIGR00455 apsK adenylylsulfate 99.9 7.1E-20 1.5E-24 141.4 17.1 164 17-181 5-168 (184)
365 PLN03140 ABC transporter G fam 99.8 1.2E-21 2.6E-26 189.1 8.3 138 16-156 177-382 (1470)
366 TIGR00956 3a01205 Pleiotropic 99.8 1.7E-21 3.6E-26 188.0 9.3 139 16-156 73-255 (1394)
367 KOG0061 Transporter, ABC super 99.8 2.3E-21 5E-26 174.0 8.9 147 16-164 42-224 (613)
368 TIGR01271 CFTR_protein cystic 99.8 2E-21 4.4E-26 188.6 8.9 133 17-152 439-590 (1490)
369 cd02027 APSK Adenosine 5'-phos 99.8 8.3E-20 1.8E-24 136.8 15.7 148 32-180 1-148 (149)
370 KOG0059 Lipid exporter ABCA1 a 99.8 2.9E-21 6.3E-26 179.7 9.2 154 4-160 564-748 (885)
371 cd03270 ABC_UvrA_I The excisio 99.8 5.5E-21 1.2E-25 152.4 9.1 143 12-156 3-185 (226)
372 COG1134 TagH ABC-type polysacc 99.8 8.1E-21 1.8E-25 150.2 9.6 133 17-155 40-192 (249)
373 PTZ00243 ABC transporter; Prov 99.8 1E-20 2.2E-25 184.1 9.8 137 14-153 670-825 (1560)
374 KOG0054 Multidrug resistance-a 99.8 5.1E-20 1.1E-24 174.2 11.0 158 5-167 1139-1331(1381)
375 COG4178 ABC-type uncharacteriz 99.8 5.7E-20 1.2E-24 162.1 10.2 147 4-155 392-560 (604)
376 cd03278 ABC_SMC_barmotin Barmo 99.8 1E-20 2.3E-25 147.9 4.7 132 21-156 14-163 (197)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.8 4.9E-20 1.1E-24 147.9 7.6 138 12-156 10-208 (243)
378 KOG0927 Predicted transporter 99.8 2.8E-19 6E-24 154.2 9.4 150 4-155 75-266 (614)
379 KOG0927 Predicted transporter 99.8 4.7E-19 1E-23 152.8 9.5 150 3-155 388-554 (614)
380 COG4615 PvdE ABC-type sideroph 99.8 2.5E-18 5.3E-23 144.1 10.8 142 5-153 323-491 (546)
381 KOG0054 Multidrug resistance-a 99.8 1.9E-18 4.1E-23 163.7 10.9 179 4-186 518-720 (1381)
382 PRK00889 adenylylsulfate kinas 99.7 1.3E-16 2.8E-21 122.2 16.3 153 28-183 2-154 (175)
383 KOG0060 Long-chain acyl-CoA tr 99.7 1E-17 2.2E-22 145.7 11.1 150 3-155 432-615 (659)
384 KOG0062 ATPase component of AB 99.7 5.9E-18 1.3E-22 145.4 9.2 144 5-155 81-243 (582)
385 cd03271 ABC_UvrA_II The excisi 99.7 2E-17 4.2E-22 134.5 10.5 140 16-157 7-219 (261)
386 KOG0065 Pleiotropic drug resis 99.7 1.2E-18 2.7E-23 162.6 2.8 139 15-156 802-976 (1391)
387 cd03273 ABC_SMC2_euk Eukaryoti 99.7 4.3E-18 9.3E-23 137.6 5.4 49 106-156 163-216 (251)
388 cd03279 ABC_sbcCD SbcCD and ot 99.7 2.9E-18 6.3E-23 135.5 4.2 142 5-157 6-180 (213)
389 COG1129 MglA ABC-type sugar tr 99.7 2.6E-17 5.6E-22 142.8 8.2 141 19-162 274-453 (500)
390 COG4138 BtuD ABC-type cobalami 99.7 1.5E-17 3.2E-22 126.1 5.2 144 4-155 3-177 (248)
391 cd03274 ABC_SMC4_euk Eukaryoti 99.7 1.4E-18 3E-23 137.4 -1.0 144 5-157 6-178 (212)
392 COG4170 SapD ABC-type antimicr 99.7 5.1E-17 1.1E-21 126.6 7.3 150 4-155 3-203 (330)
393 PRK05506 bifunctional sulfate 99.7 6.2E-16 1.3E-20 139.8 15.5 161 20-181 450-610 (632)
394 COG1245 Predicted ATPase, RNas 99.7 1.4E-16 3.1E-21 135.5 8.2 123 20-155 352-500 (591)
395 cd03240 ABC_Rad50 The catalyti 99.7 2.7E-16 5.9E-21 123.6 8.6 125 24-157 17-169 (204)
396 KOG0066 eIF2-interacting prote 99.7 2.7E-16 5.9E-21 133.6 8.7 143 3-155 585-749 (807)
397 KOG0064 Peroxisomal long-chain 99.6 1.2E-15 2.7E-20 131.7 9.3 148 5-156 482-658 (728)
398 cd03276 ABC_SMC6_euk Eukaryoti 99.6 2.2E-15 4.7E-20 118.0 10.0 131 20-156 12-159 (198)
399 PRK05537 bifunctional sulfate 99.6 6.5E-15 1.4E-19 131.3 14.2 158 24-182 386-545 (568)
400 PRK00349 uvrA excinuclease ABC 99.6 7E-15 1.5E-19 137.0 11.5 59 97-157 813-880 (943)
401 KOG2355 Predicted ABC-type tra 99.6 8.1E-15 1.8E-19 113.8 8.2 148 4-155 13-192 (291)
402 COG1245 Predicted ATPase, RNas 99.6 9.9E-15 2.1E-19 124.4 8.2 141 9-155 79-258 (591)
403 cd03275 ABC_SMC1_euk Eukaryoti 99.6 3.7E-15 8E-20 120.3 4.9 51 108-160 154-209 (247)
404 TIGR00630 uvra excinuclease AB 99.6 1.6E-14 3.4E-19 134.4 9.7 48 107-156 826-877 (924)
405 PRK05541 adenylylsulfate kinas 99.5 4.3E-13 9.2E-18 102.7 15.8 151 27-182 4-154 (176)
406 cd03277 ABC_SMC5_euk Eukaryoti 99.5 6.9E-14 1.5E-18 110.7 9.0 133 21-157 15-177 (213)
407 PRK00635 excinuclease ABC subu 99.5 3.2E-14 7E-19 138.3 8.4 63 96-160 791-862 (1809)
408 COG3845 ABC-type uncharacteriz 99.5 4.6E-14 1E-18 121.2 7.6 154 4-160 257-453 (501)
409 cd03280 ABC_MutS2 MutS2 homolo 99.5 1.5E-14 3.2E-19 113.3 3.9 117 19-155 16-136 (200)
410 KOG0062 ATPase component of AB 99.5 1.9E-13 4.2E-18 117.8 9.6 143 3-155 361-527 (582)
411 cd03243 ABC_MutS_homologs The 99.5 3E-14 6.5E-19 111.6 3.5 111 23-152 22-132 (202)
412 COG2401 ABC-type ATPase fused 99.5 1.8E-13 3.9E-18 115.8 7.8 137 17-155 396-556 (593)
413 cd03227 ABC_Class2 ABC-type Cl 99.4 2.8E-13 6.2E-18 102.7 6.6 109 23-156 14-127 (162)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.4 8.9E-14 1.9E-18 109.3 3.8 114 16-149 15-129 (204)
415 KOG0066 eIF2-interacting prote 99.4 2.5E-13 5.3E-18 115.8 6.2 148 5-154 265-456 (807)
416 cd03283 ABC_MutS-like MutS-lik 99.4 8.8E-13 1.9E-17 103.3 7.9 36 17-54 14-49 (199)
417 KOG3354 Gluconate kinase [Carb 99.4 2E-12 4.3E-17 96.0 8.4 142 31-186 13-167 (191)
418 cd03239 ABC_SMC_head The struc 99.4 1E-12 2.3E-17 101.2 6.9 45 110-156 95-144 (178)
419 cd03285 ABC_MSH2_euk MutS2 hom 99.3 9.4E-13 2E-17 104.8 3.9 116 16-154 16-139 (222)
420 COG3265 GntK Gluconate kinase 99.3 3.5E-12 7.6E-17 94.0 6.6 128 36-177 1-133 (161)
421 COG0178 UvrA Excinuclease ATPa 99.3 2E-11 4.4E-16 110.3 10.2 48 107-156 820-871 (935)
422 PRK09825 idnK D-gluconate kina 99.3 5.8E-11 1.3E-15 91.3 10.2 110 29-145 2-116 (176)
423 cd03242 ABC_RecF RecF is a rec 99.2 5.3E-11 1.1E-15 97.3 10.4 48 107-156 181-238 (270)
424 cd03241 ABC_RecN RecN ATPase i 99.2 3.6E-11 7.9E-16 98.6 9.0 46 109-156 170-220 (276)
425 cd00820 PEPCK_HprK Phosphoenol 99.2 7.8E-12 1.7E-16 88.2 4.2 47 17-70 2-48 (107)
426 KOG0065 Pleiotropic drug resis 99.2 7.7E-12 1.7E-16 117.8 4.1 147 17-167 128-318 (1391)
427 PRK00635 excinuclease ABC subu 99.2 8.6E-11 1.9E-15 114.9 10.9 60 95-156 1680-1748(1809)
428 cd03281 ABC_MSH5_euk MutS5 hom 99.2 3E-11 6.4E-16 95.6 5.9 114 17-149 16-129 (213)
429 PRK08533 flagellar accessory p 99.1 3.8E-10 8.1E-15 90.3 10.5 126 6-155 9-148 (230)
430 PRK11545 gntK gluconate kinase 99.1 7.8E-10 1.7E-14 84.0 11.2 127 36-176 1-135 (163)
431 TIGR02858 spore_III_AA stage I 99.1 2.3E-10 5E-15 93.5 8.7 39 31-70 112-150 (270)
432 smart00534 MUTSac ATPase domai 99.1 3.4E-11 7.3E-16 93.2 2.2 97 32-151 1-101 (185)
433 TIGR01069 mutS2 MutS2 family p 99.1 5.1E-11 1.1E-15 109.8 3.3 114 23-155 314-430 (771)
434 TIGR03238 dnd_assoc_3 dnd syst 99.1 5.5E-11 1.2E-15 103.1 3.1 51 17-70 19-70 (504)
435 KOG0063 RNAse L inhibitor, ABC 99.1 5.4E-10 1.2E-14 95.2 8.0 134 12-148 343-494 (592)
436 cd03284 ABC_MutS1 MutS1 homolo 99.1 1.3E-09 2.9E-14 86.3 9.7 37 17-54 18-54 (216)
437 PTZ00132 GTP-binding nuclear p 99.0 1.6E-09 3.4E-14 85.4 8.9 41 114-156 157-203 (215)
438 cd00227 CPT Chloramphenicol (C 99.0 8.8E-09 1.9E-13 78.8 11.7 143 29-182 1-159 (175)
439 cd03287 ABC_MSH3_euk MutS3 hom 99.0 1.5E-09 3.2E-14 86.4 7.5 48 17-64 18-65 (222)
440 TIGR01313 therm_gnt_kin carboh 98.9 7.6E-09 1.6E-13 78.0 9.5 106 33-145 1-111 (163)
441 PRK06793 fliI flagellum-specif 98.9 3E-09 6.6E-14 91.9 7.8 122 6-144 132-262 (432)
442 cd02021 GntK Gluconate kinase 98.9 1.1E-08 2.3E-13 76.1 9.8 109 32-145 1-115 (150)
443 PF02463 SMC_N: RecF/RecN/SMC 98.8 5.2E-09 1.1E-13 82.7 5.9 45 109-155 136-185 (220)
444 PRK00064 recF recombination pr 98.8 1.9E-08 4.1E-13 85.6 9.4 46 108-155 272-327 (361)
445 cd01128 rho_factor Transcripti 98.8 7.9E-08 1.7E-12 77.8 10.9 117 25-145 11-170 (249)
446 KOG0063 RNAse L inhibitor, ABC 98.8 6.9E-09 1.5E-13 88.6 4.8 126 27-155 97-258 (592)
447 cd03286 ABC_MSH6_euk MutS6 hom 98.8 2.4E-09 5.2E-14 85.0 1.9 39 16-54 16-54 (218)
448 cd01130 VirB11-like_ATPase Typ 98.8 6.7E-09 1.5E-13 80.4 4.1 47 19-66 14-60 (186)
449 PRK13695 putative NTPase; Prov 98.8 5.1E-09 1.1E-13 80.0 2.9 119 32-155 2-125 (174)
450 COG3910 Predicted ATPase [Gene 98.7 8.7E-08 1.9E-12 73.8 9.3 137 16-160 22-178 (233)
451 cd01124 KaiC KaiC is a circadi 98.7 1E-07 2.2E-12 73.0 9.3 111 32-155 1-125 (187)
452 PRK06762 hypothetical protein; 98.7 9E-08 1.9E-12 72.4 8.5 110 30-145 2-113 (166)
453 cd01131 PilT Pilus retraction 98.7 9.2E-08 2E-12 74.8 8.8 98 32-157 3-100 (198)
454 PRK00409 recombination and DNA 98.7 3.5E-09 7.7E-14 97.9 0.6 106 21-151 319-430 (782)
455 TIGR02788 VirB11 P-type DNA tr 98.7 7E-08 1.5E-12 80.5 7.2 42 23-65 137-178 (308)
456 PRK10078 ribose 1,5-bisphospho 98.6 2.1E-07 4.5E-12 71.9 8.7 36 30-69 2-37 (186)
457 cd02023 UMPK Uridine monophosp 98.6 7.2E-08 1.6E-12 75.0 6.1 23 32-54 1-23 (198)
458 PRK10416 signal recognition pa 98.6 5.4E-07 1.2E-11 75.4 11.3 42 27-69 111-152 (318)
459 smart00382 AAA ATPases associa 98.6 1.5E-07 3.3E-12 67.2 7.0 96 29-147 1-97 (148)
460 PRK06002 fliI flagellum-specif 98.6 5E-08 1.1E-12 84.6 4.4 61 4-66 139-200 (450)
461 TIGR00235 udk uridine kinase. 98.6 6.8E-08 1.5E-12 75.9 4.6 28 28-55 4-31 (207)
462 TIGR01420 pilT_fam pilus retra 98.5 5.9E-07 1.3E-11 76.0 9.9 102 28-157 120-221 (343)
463 PF13555 AAA_29: P-loop contai 98.5 1.1E-07 2.3E-12 60.5 4.0 35 21-55 13-48 (62)
464 cd01120 RecA-like_NTPases RecA 98.5 7E-07 1.5E-11 66.1 8.7 34 32-65 1-34 (165)
465 PRK09862 putative ATP-dependen 98.5 1.1E-07 2.3E-12 84.0 4.1 62 8-70 188-249 (506)
466 PRK06067 flagellar accessory p 98.5 2.3E-06 4.9E-11 68.4 11.1 116 17-147 11-139 (234)
467 PRK13477 bifunctional pantoate 98.5 7.1E-07 1.5E-11 78.9 8.3 55 10-70 265-319 (512)
468 TIGR03574 selen_PSTK L-seryl-t 98.4 7.5E-06 1.6E-10 66.1 13.5 39 32-70 1-39 (249)
469 PRK14490 putative bifunctional 98.4 1.2E-07 2.5E-12 81.0 2.7 141 28-180 3-148 (369)
470 PRK07594 type III secretion sy 98.4 1.6E-07 3.4E-12 81.4 3.4 61 5-67 130-191 (433)
471 PLN02796 D-glycerate 3-kinase 98.4 1.9E-07 4.1E-12 78.5 3.7 53 18-70 80-142 (347)
472 PRK09270 nucleoside triphospha 98.4 2.8E-07 6.1E-12 73.6 4.5 35 26-61 29-63 (229)
473 PRK00300 gmk guanylate kinase; 98.4 3.1E-07 6.7E-12 71.7 4.1 27 28-54 3-29 (205)
474 PRK07721 fliI flagellum-specif 98.4 2.7E-07 5.9E-12 80.2 4.0 50 16-67 145-194 (438)
475 PF13671 AAA_33: AAA domain; P 98.4 1.7E-06 3.8E-11 63.3 7.6 108 32-144 1-114 (143)
476 PRK07196 fliI flagellum-specif 98.4 2.7E-07 5.8E-12 80.0 3.3 41 16-58 142-182 (434)
477 TIGR00554 panK_bact pantothena 98.3 6.1E-07 1.3E-11 74.1 5.0 36 28-63 60-96 (290)
478 PRK06995 flhF flagellar biosyn 98.3 4.5E-06 9.8E-11 73.3 10.6 36 19-54 245-280 (484)
479 TIGR00630 uvra excinuclease AB 98.3 6.5E-07 1.4E-11 84.2 5.4 53 106-160 484-539 (924)
480 TIGR00767 rho transcription te 98.3 7.1E-07 1.5E-11 76.5 5.2 52 4-55 130-193 (415)
481 PRK08149 ATP synthase SpaL; Va 98.3 3.9E-07 8.5E-12 78.8 3.6 54 15-70 137-193 (428)
482 cd01136 ATPase_flagellum-secre 98.3 4.3E-07 9.4E-12 76.1 3.6 50 15-66 55-104 (326)
483 PRK00349 uvrA excinuclease ABC 98.3 6.9E-07 1.5E-11 84.1 5.0 52 107-160 487-541 (943)
484 PRK14722 flhF flagellar biosyn 98.3 8.2E-06 1.8E-10 69.6 10.9 38 17-54 124-161 (374)
485 cd02025 PanK Pantothenate kina 98.3 9.5E-07 2.1E-11 70.2 4.7 24 32-55 1-24 (220)
486 PRK09099 type III secretion sy 98.3 7.8E-07 1.7E-11 77.3 4.1 51 15-67 149-199 (441)
487 PRK14723 flhF flagellar biosyn 98.3 1E-05 2.2E-10 74.4 11.4 36 19-54 174-209 (767)
488 PHA02530 pseT polynucleotide k 98.3 9.1E-06 2E-10 67.1 10.2 37 31-71 3-39 (300)
489 PRK05480 uridine/cytidine kina 98.3 1.7E-06 3.8E-11 67.8 5.5 27 28-54 4-30 (209)
490 TIGR02546 III_secr_ATP type II 98.2 9.2E-07 2E-11 76.7 4.0 48 16-65 132-179 (422)
491 PRK06731 flhF flagellar biosyn 98.2 2.4E-05 5.1E-10 64.1 11.7 37 19-55 57-100 (270)
492 PRK14721 flhF flagellar biosyn 98.2 9.6E-06 2.1E-10 70.2 9.8 28 27-54 188-215 (420)
493 TIGR02322 phosphon_PhnN phosph 98.2 1.1E-06 2.4E-11 67.2 3.6 25 30-54 1-25 (179)
494 PRK06315 type III secretion sy 98.2 1.2E-06 2.5E-11 76.2 3.9 50 16-66 151-200 (442)
495 TIGR00750 lao LAO/AO transport 98.2 2.7E-06 5.8E-11 70.7 5.6 43 17-59 21-63 (300)
496 TIGR01026 fliI_yscN ATPase Fli 98.2 1.3E-06 2.8E-11 76.1 3.8 48 16-65 150-197 (440)
497 PRK12726 flagellar biosynthesi 98.2 4.4E-05 9.6E-10 65.2 12.8 46 24-69 200-245 (407)
498 cd00009 AAA The AAA+ (ATPases 98.2 6.8E-06 1.5E-10 59.1 6.8 27 29-55 18-44 (151)
499 TIGR03497 FliI_clade2 flagella 98.2 1.6E-06 3.6E-11 74.9 4.0 52 15-68 123-174 (413)
500 TIGR03498 FliI_clade3 flagella 98.2 1.5E-06 3.3E-11 75.1 3.8 50 16-67 127-176 (418)
No 1
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-37 Score=229.25 Aligned_cols=172 Identities=56% Similarity=0.934 Sum_probs=162.8
Q ss_pred cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHH
Q 029613 9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 88 (190)
Q Consensus 9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~ 88 (190)
|+.|+-.......+..+.-++|.++|++|.|||||||++.++...|...|...+++||+++++.+..++||+.+++.+++
T Consensus 2 ni~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eni 81 (197)
T COG0529 2 NIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENI 81 (197)
T ss_pred CccccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHH
Confidence 45565556666777788889999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccc
Q 029613 89 RRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFC 168 (190)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
++++.++.++.+.|+..+++..|++...|+.||.++.+.+|+||++|.|...|..||+++||++++.|+|+++||++++
T Consensus 82 RRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~p- 160 (197)
T COG0529 82 RRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSP- 160 (197)
T ss_pred HHHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEec
Q 029613 169 YYEKLIPRTCKKK 181 (190)
Q Consensus 169 ~~~p~~p~~~~~~ 181 (190)
||+|.+||+++|-
T Consensus 161 YE~P~~Pel~l~t 173 (197)
T COG0529 161 YEAPENPELHLDT 173 (197)
T ss_pred CCCCCCCeeEecc
Confidence 9999999999984
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=240.86 Aligned_cols=158 Identities=22% Similarity=0.247 Sum_probs=128.0
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i 77 (190)
+||+++|++|+||...+|+++|+++++||+++|+||||||||||+|||+++. .+++|.|.++|.++.. .++..+
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-EPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-CCCCceEEECCEeccchhhHHHHHHhc
Confidence 3789999999999999999999999999999999999999999999999955 8899999999976532 244555
Q ss_pred CCChhhH--------HHHHH-------------HHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 78 GFSAEDR--------TENIR-------------RVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 78 ~~~~~~~--------~~~~~-------------~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
|++.|.. -+|+. .-.....++...|+. .++..|||||+|| +|||||+.+|+++
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm- 158 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM- 158 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE-
Confidence 6655541 11110 111233456677775 3689999999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcCCCCCccc
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAGKIKGLLS 163 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~ 163 (190)
++|||||+|||..+..+.+.+++..-.|.|.
T Consensus 159 -LFDEPTSALDPElv~EVL~vm~~LA~eGmTM 189 (240)
T COG1126 159 -LFDEPTSALDPELVGEVLDVMKDLAEEGMTM 189 (240)
T ss_pred -eecCCcccCCHHHHHHHHHHHHHHHHcCCeE
Confidence 9999999999999999988888766666554
No 3
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-36 Score=219.07 Aligned_cols=177 Identities=71% Similarity=1.144 Sum_probs=169.4
Q ss_pred cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHH
Q 029613 7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86 (190)
Q Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~ 86 (190)
..|+.|.-.+++--++.-|--++|.++||+|.|||||||++=+|...|...|.-.+.+||++++++++.+++|..+++.+
T Consensus 8 atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~E 87 (207)
T KOG0635|consen 8 ATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNE 87 (207)
T ss_pred ccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhh
Confidence 67899998888888999999999999999999999999999999999877888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccc
Q 029613 87 NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFS 166 (190)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
++++++.++.+|.+.+++.+.+..|++++.|+-+|+++++.+|+||++|.|...++.|+++++|+.++.|+|+|+||+++
T Consensus 88 NIRRigeVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGIdd 167 (207)
T KOG0635|consen 88 NIRRIGEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGIDD 167 (207)
T ss_pred hHHHHHHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEecCCc
Q 029613 167 FCYYEKLIPRTCKKKISA 184 (190)
Q Consensus 167 ~~~~~p~~p~~~~~~~~~ 184 (190)
+ ||.|.+|++++.....
T Consensus 168 P-YEaP~~cEi~l~~~~~ 184 (207)
T KOG0635|consen 168 P-YEAPLNCEIVLKSHES 184 (207)
T ss_pred c-ccCCCCcEEEEccCCC
Confidence 9 9999999999987643
No 4
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-36 Score=241.18 Aligned_cols=159 Identities=20% Similarity=0.264 Sum_probs=129.4
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc-ccccCC
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL-NKNLGF 79 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~-~~~i~~ 79 (190)
|.++++++|++++|++.++++|+||++.+|++++|+||||||||||+|+|.|++ +|.+|+|.+.|.+..... ...++|
T Consensus 1 ~~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 1 MMPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred CCcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcceEEEccccccccccCCeEEE
Confidence 456899999999999668999999999999999999999999999999999988 889999999988654321 234667
Q ss_pred ChhhH----------HH-----------HHHH-----HHHHHHHHHHcCccee----ecccCccHHHHH-HHHHhCCCCC
Q 029613 80 SAEDR----------TE-----------NIRR-----VGEVAKLFADAGLICI----ASLISPYRKDRD-ACRAMLPDSN 128 (190)
Q Consensus 80 ~~~~~----------~~-----------~~~~-----~~~~~~~~~~~~~~~~----~~~lS~g~kqr~-iarall~~~~ 128 (190)
.||.. .+ ++++ ...+...++..++..+ ...|||||+||. +||||+++|+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ 159 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD 159 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence 77641 01 0111 1345556677777654 678999999996 9999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
++ +|||||+++|+.....+|+.+++.+-+|.+
T Consensus 160 ll--lLDEP~~gvD~~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 160 LL--LLDEPFTGVDVAGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred EE--EecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 99 999999999999999999999987665644
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-35 Score=237.93 Aligned_cols=151 Identities=20% Similarity=0.212 Sum_probs=121.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
+++++|++++|+++.+++++||++++|++++|+||||||||||+|+|+|++ +|.+|+|.++|.++.. .+...++|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l-~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL-KPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 689999999999999999999999999999999999999999999999988 7899999999998754 23334455
Q ss_pred ChhhH----------------HHHHHH--------HHHHHHHHHHcCcce----eecccCccHHHHH-HHHHhCCCCCeE
Q 029613 80 SAEDR----------------TENIRR--------VGEVAKLFADAGLIC----IASLISPYRKDRD-ACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~~----------------~~~~~~--------~~~~~~~~~~~~~~~----~~~~lS~g~kqr~-iarall~~~~il 130 (190)
.+|.. ..+... ...+.+.+...++.. .+..||||||||. +|||++++|+++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 55431 000000 012333455555543 3788999999995 999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||+.||.+.+..+++.+++..
T Consensus 161 --LLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 161 --LLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred --EeCCCccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999998888643
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-35 Score=230.67 Aligned_cols=148 Identities=21% Similarity=0.230 Sum_probs=118.5
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~ 83 (190)
++.+++++++|+...+++|+||++.+||+++|+||||||||||+|+|+|+. ++++|+|.++|+.+. ....+++|..|+
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~V~~~g~~v~-~p~~~~~~vFQ~ 80 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGEVLLDGRPVT-GPGPDIGYVFQE 80 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCcccC-CCCCCEEEEecc
Confidence 688999999999999999999999999999999999999999999999977 889999999998762 222223333332
Q ss_pred --------HHHHH------------HHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 84 --------RTENI------------RRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 84 --------~~~~~------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
..+|. .+-......+...|+. .++.+|||||||| +||||++.+|+++ +|||||
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL--LlDEPF 158 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL--LLDEPF 158 (248)
T ss_pred CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE--EEcCCc
Confidence 11111 1112344566666764 3589999999999 6999999999999 999999
Q ss_pred hhhhhcChHHHHHHHHc
Q 029613 139 ELCEARDPKGLYKLARA 155 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~ 155 (190)
++||.-.+..+.+.+.+
T Consensus 159 gALDalTR~~lq~~l~~ 175 (248)
T COG1116 159 GALDALTREELQDELLR 175 (248)
T ss_pred chhhHHHHHHHHHHHHH
Confidence 99999998887766654
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-34 Score=226.82 Aligned_cols=149 Identities=21% Similarity=0.290 Sum_probs=125.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
|++++|++|+|++..+++++||++++||+++++|||||||||++|+|++++ .|++|.|+++|+++.. .++..+||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-ept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-EPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-CCCCceEEECCeecccCCHHHHHHhhhh
Confidence 689999999999999999999999999999999999999999999999988 8899999999998764 45666777
Q ss_pred Chhh--------HHHHHHHHH------------HHHHHHHHcCcc------eeecccCccHHHHH-HHHHhCCCCCeEEE
Q 029613 80 SAED--------RTENIRRVG------------EVAKLFADAGLI------CIASLISPYRKDRD-ACRAMLPDSNFIEV 132 (190)
Q Consensus 80 ~~~~--------~~~~~~~~~------------~~~~~~~~~~~~------~~~~~lS~g~kqr~-iarall~~~~il~v 132 (190)
.-+. ..+++..+. .+.+++...++. .++.+|||||+||. +|||++.+|+++
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il-- 157 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL-- 157 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE--
Confidence 7665 234433321 233445555553 36999999999995 999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHc
Q 029613 133 FMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+|||||++||+-.++.+.+.+.+
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred eecCCccccChhhHHHHHHHHHH
Confidence 99999999999999988877765
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-35 Score=242.48 Aligned_cols=169 Identities=21% Similarity=0.192 Sum_probs=131.7
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccC
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLG 78 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~ 78 (190)
|. +|+++|++|.|++..+++++|+++++||+++|+||||||||||+|+|+|+. .+++|.|+++|+++.. +...+++
T Consensus 1 M~-~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~~~~G~I~i~g~~vt~l~P~~R~ia 78 (338)
T COG3839 1 MA-ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-EPTSGEILIDGRDVTDLPPEKRGIA 78 (338)
T ss_pred Cc-EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhHCCEE
Confidence 54 689999999999877999999999999999999999999999999999976 8899999999988754 1222333
Q ss_pred CChhh-----------------------HHHHHHHHHHHHHHHHHcCcc-eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 79 FSAED-----------------------RTENIRRVGEVAKLFADAGLI-CIASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 79 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
+..|. ..+..+++.+++..+....+. ..+..|||||+|| ++|||++.+|+++ +
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~--L 156 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVF--L 156 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEE--E
Confidence 33332 123334455566555443333 3589999999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCc
Q 029613 134 MNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR 176 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~ 176 (190)
||||+|+||.+.+..+..-+++.| ...+.+.. |.+++..|
T Consensus 157 ~DEPlSnLDa~lR~~mr~ei~~lh--~~l~~T~I-YVTHDq~E 196 (338)
T COG3839 157 LDEPLSNLDAKLRVLMRSEIKKLH--ERLGTTTI-YVTHDQVE 196 (338)
T ss_pred ecCchhHhhHHHHHHHHHHHHHHH--HhcCCcEE-EEcCCHHH
Confidence 999999999999888777776532 33456666 88877665
No 9
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-34 Score=237.56 Aligned_cols=168 Identities=20% Similarity=0.225 Sum_probs=128.2
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCC
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFS 80 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~ 80 (190)
+.++++|++|+|++..+++|+||++++||+++|+|||||||||++|+|+|+. .|++|.|.++|+++.. .-+..++++
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhhccccee
Confidence 4789999999999999999999999999999999999999999999999966 8999999999998764 122334444
Q ss_pred hhh--------HHHHHHH------------H-HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 81 AED--------RTENIRR------------V-GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 81 ~~~--------~~~~~~~------------~-~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
.|+ ..+|+.. + ..+.+++...++. ..+..|||||+|| ++||||+.+|+++ +|
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vL--LL 160 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVL--LL 160 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchh--hh
Confidence 443 1222110 0 1333444444443 3489999999999 6999999999999 99
Q ss_pred eCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCc
Q 029613 135 NMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR 176 (190)
Q Consensus 135 DEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~ 176 (190)
|||+|+||.+.++.+..-+++.+ .-.|.+.. |-+++.-|
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq--~~~giT~i-~VTHDqeE 199 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQ--RELGITFV-YVTHDQEE 199 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHH--HhcCCeEE-EEECCHHH
Confidence 99999999999887776666532 22355555 66655433
No 10
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-33 Score=214.05 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=129.3
Q ss_pred ccccCcceeccCccc-cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCC
Q 029613 4 VGNSTNIFWQESPIG-RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~-~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~ 79 (190)
|+++++++|+|++.. +++|+||++++|++++|+|||||||||++|+|++++ .|++|.+.++|-+... ..+..+|.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL-~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-IPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc-cCCCceEEEeecccccChHHHhhhcce
Confidence 689999999999865 999999999999999999999999999999999999 8899999999977543 12333333
Q ss_pred Chhh--------HHHHHHHHHH------------HHHHHHHcCccee----ecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 80 SAED--------RTENIRRVGE------------VAKLFADAGLICI----ASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 80 ~~~~--------~~~~~~~~~~------------~~~~~~~~~~~~~----~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
...+ .++++..++. ++.+...+++..+ +..+|-|+||| .+|||++++|.++ +|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~--vl 157 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSIL--VL 157 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeE--EE
Confidence 2221 3344444322 2334444555443 67899999999 5999999999999 99
Q ss_pred eCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCc
Q 029613 135 NMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR 176 (190)
Q Consensus 135 DEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~ 176 (190)
|||+++||.+..+.+++.+++.+..|..=+ |.++.-+|
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~vi----FSSH~m~E 195 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVI----FSSHIMQE 195 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEE----EecccHHH
Confidence 999999999999999999998777665433 44454444
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=6.5e-33 Score=224.83 Aligned_cols=149 Identities=23% Similarity=0.264 Sum_probs=120.1
Q ss_pred ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613 4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------- 71 (190)
||++++++|.|.. ..+++++||+|++|+++||+|+||||||||+|+|+++ ..|++|.|+++|+++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-e~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-ERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-CCCCCceEEEcCEecccCChHHHH
Confidence 5899999999975 5799999999999999999999999999999999995 48999999999987643
Q ss_pred ccccccCCChhh--------HHHHH------------HHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCC
Q 029613 72 GLNKNLGFSAED--------RTENI------------RRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 72 ~~~~~i~~~~~~--------~~~~~------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~ 126 (190)
.++..+++..|. ..+++ ..-.++.++++..|+. .+++.|||||||| .||||++.+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 233344443332 11111 1113455666666664 3689999999999 599999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
|+++ +.|||||+|||...+.+.+.+++
T Consensus 160 P~iL--L~DEaTSALDP~TT~sIL~LL~~ 186 (339)
T COG1135 160 PKIL--LCDEATSALDPETTQSILELLKD 186 (339)
T ss_pred CCEE--EecCccccCChHHHHHHHHHHHH
Confidence 9999 99999999999999999988876
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=1.1e-32 Score=227.41 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=127.0
Q ss_pred CCcccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccc
Q 029613 1 MATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKN 76 (190)
Q Consensus 1 m~~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~ 76 (190)
|..+++++|++|.|+ .+.+|+++||++++|++++|+||||||||||+|+|+|++ .+.+|.|.++|.+... ..+..
T Consensus 1 ~~~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~-~p~~G~i~i~G~~~~~~~~~~~~~ 79 (293)
T COG1131 1 MIEVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL-KPTSGEILVLGYDVVKEPAKVRRR 79 (293)
T ss_pred CCceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEEcCEeCccCHHHHHhh
Confidence 445678899999999 699999999999999999999999999999999999988 7899999999977653 34445
Q ss_pred cCCChhh--------HHHHHHHHH------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 77 LGFSAED--------RTENIRRVG------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 77 i~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
++|.+++ ..+++..+. .+..++..+++.. .+..+|+||||| .+|+||+.+|+++
T Consensus 80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll- 158 (293)
T COG1131 80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL- 158 (293)
T ss_pred eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE-
Confidence 6666554 223332221 2344566666653 367799999999 5999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+|||||++||+..+..+++.+++....|
T Consensus 159 -iLDEPt~GLDp~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 159 -ILDEPTSGLDPESRREIWELLRELAKEG 186 (293)
T ss_pred -EECCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998754444
No 13
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.4e-32 Score=215.58 Aligned_cols=150 Identities=21% Similarity=0.288 Sum_probs=119.3
Q ss_pred cccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------ccc
Q 029613 3 TVGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLN 74 (190)
Q Consensus 3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~ 74 (190)
+||+++|+++.| ++++++++|||+|++||+++|+|+||||||||+|+|+|++ +++.|+|.++|.++.. ..+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcceEEecccchhccchHHHHHHH
Confidence 479999999999 7899999999999999999999999999999999999977 8899999999977542 123
Q ss_pred cccCCChhh--------HHHH-----------HHHH---------HHHHHHHHHcCccee----ecccCccHHHH-HHHH
Q 029613 75 KNLGFSAED--------RTEN-----------IRRV---------GEVAKLFADAGLICI----ASLISPYRKDR-DACR 121 (190)
Q Consensus 75 ~~i~~~~~~--------~~~~-----------~~~~---------~~~~~~~~~~~~~~~----~~~lS~g~kqr-~iar 121 (190)
..+|+..+. ..++ ++.+ .+....++..++.+. ...|||||+|| +|||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 334443332 1111 0000 123345566666543 67799999999 6999
Q ss_pred HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+|+++|+++ +.|||+++||+...+.+.+.+++
T Consensus 161 aL~Q~pkiI--LADEPvasLDp~~a~~Vm~~l~~ 192 (258)
T COG3638 161 ALVQQPKII--LADEPVASLDPESAKKVMDILKD 192 (258)
T ss_pred HHhcCCCEE--ecCCcccccChhhHHHHHHHHHH
Confidence 999999999 99999999999999999888876
No 14
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.98 E-value=9e-32 Score=201.82 Aligned_cols=152 Identities=57% Similarity=0.981 Sum_probs=131.9
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeec
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIAS 108 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (190)
+|.++||+|.+|||||||++.|...|...+...+++||+.+...+..+++|+.+++.++++++..++.++...|...+++
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 57899999999999999999999999888889999999999998888999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEec
Q 029613 109 LISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK 181 (190)
Q Consensus 109 ~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~ 181 (190)
..|+.+..|+.+|.++.+.+++||++|.|...|..|+++++|+.++.|++++++|++++ ||+|.+||+++|-
T Consensus 81 ~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~~Gvd~~-ye~P~~pdl~idt 152 (156)
T PF01583_consen 81 FISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNFTGVDDP-YEEPLNPDLVIDT 152 (156)
T ss_dssp ----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSHTTTSS------SS-SEEEET
T ss_pred eccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCccccccC-CCCCCCCeEEEeC
Confidence 99999999999999999889999999999999999999999999999999999999999 9999999999984
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=2.3e-32 Score=215.69 Aligned_cols=150 Identities=24% Similarity=0.257 Sum_probs=118.7
Q ss_pred ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613 4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------- 72 (190)
|++++|++|.|+. ..+|+++||++++||+++|+||||||||||+++|.|+. .|++|.|.++|.++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEcCcCCHHHHHH
Confidence 4678999999854 47999999999999999999999999999999999976 77999999999776421
Q ss_pred -cccccCCChhh--------HHHHHH------------HHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCC
Q 029613 73 -LNKNLGFSAED--------RTENIR------------RVGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLP 125 (190)
Q Consensus 73 -~~~~i~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~ 125 (190)
-+..+||..|. ..+++. .......++..+++. ..+..|||||+|| +||||++.
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 12234554443 223332 112233444555664 4588999999999 69999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|+++ +.||||.+||.+..+.+.+.+++.
T Consensus 160 ~P~ii--lADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 160 NPKII--LADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred CCCeE--EeeCccccCChHHHHHHHHHHHHH
Confidence 99999 999999999999999999998875
No 16
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.5e-32 Score=214.33 Aligned_cols=150 Identities=22% Similarity=0.240 Sum_probs=118.0
Q ss_pred cccccCcceeccCccc----cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----c
Q 029613 3 TVGNSTNIFWQESPIG----RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----L 73 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~ 73 (190)
+|++++|+++.|+... ++++|||++.+||+++|+|+||||||||+|+|+|+. ++..|.|.++|..+... .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-CCCCceEEECCcccCccccchhh
Confidence 4899999999998877 999999999999999999999999999999999966 88999999999765331 1
Q ss_pred ccccCCChhh----------HHHHHH----------HHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCC
Q 029613 74 NKNLGFSAED----------RTENIR----------RVGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 74 ~~~i~~~~~~----------~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~ 127 (190)
...+-+..|+ ..+.+. .-.++.+++...++. .++.+|||||+|| +||||+..+|
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 1122222222 000000 001255666666664 3588999999999 7999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+++ ++|||||+||......++..+.+
T Consensus 161 klL--IlDEptSaLD~siQa~IlnlL~~ 186 (252)
T COG1124 161 KLL--ILDEPTSALDVSVQAQILNLLLE 186 (252)
T ss_pred CEE--EecCchhhhcHHHHHHHHHHHHH
Confidence 999 99999999999999888877765
No 17
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.1e-32 Score=214.53 Aligned_cols=158 Identities=12% Similarity=0.159 Sum_probs=135.4
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~ 83 (190)
++++++++|+|+.+.+++|+||++++|+++|++|+|||||||++|+|.|++ .+++|.|.++|.++.....+.+||.|++
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll-e~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL-EPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC-CccCceEEEcCcchhhhhhhhcccChhh
Confidence 589999999999999999999999999999999999999999999999988 8899999999999998888889999987
Q ss_pred H--------HHHHHHHH------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 84 R--------TENIRRVG------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 84 ~--------~~~~~~~~------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
+ .+.+..++ ++..++.++.+.. .+..||.|++|+ .+..+++++|+++ +|||||
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl--ILDEPF 158 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL--ILDEPF 158 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE--EecCCc
Confidence 4 23333332 2344566655543 377899999999 6999999999999 999999
Q ss_pred hhhhhcChHHHHHHHHcCCCCCcccc
Q 029613 139 ELCEARDPKGLYKLARAGKIKGLLSI 164 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
|+||+..++-+-+.+.+.+..|.+=+
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIi 184 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATII 184 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999988777775433
No 18
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.7e-32 Score=215.66 Aligned_cols=151 Identities=23% Similarity=0.223 Sum_probs=118.5
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNK 75 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~ 75 (190)
+++++++++++|+++.++++++|++.+||+++|+|+||||||||+|+|.|++ +|.+|+|+++|.++.. .++.
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL-RPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC-CCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999999999988 8999999999988643 1222
Q ss_pred ccCCChhh--------HHHHHH------------HHHHH-HHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 76 NLGFSAED--------RTENIR------------RVGEV-AKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~------------~~~~~-~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
.+|+..|. ..+|.. .+.++ ...++..|+. .++++|||||++| ++|||++.+|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPe 165 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPE 165 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCC
Confidence 22322221 112211 11121 2234445553 3589999999999 59999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ ++||||++|||-.-..+-+++++.
T Consensus 166 ll--~~DEPtsGLDPI~a~~~~~LI~~L 191 (263)
T COG1127 166 LL--FLDEPTSGLDPISAGVIDELIREL 191 (263)
T ss_pred EE--EecCCCCCCCcchHHHHHHHHHHH
Confidence 99 999999999999988888777764
No 19
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.97 E-value=8.5e-32 Score=205.02 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=125.4
Q ss_pred ccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------ccc
Q 029613 4 VGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------LNK 75 (190)
Q Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------~~~ 75 (190)
||+++|++|+|++ .++|+|+||++++||++.|+||||||||||+|+|++.. .|+.|.|+++|.++..- ++.
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceEEECCeecccccccccchhhh
Confidence 5899999999964 55999999999999999999999999999999999977 88999999999887542 344
Q ss_pred ccCCChhhH--------HHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 76 NLGFSAEDR--------TENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 76 ~i~~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+|.+.|+. .++... -.++...++..|+. .++..||||++|| +||||++++|.++
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 455555541 122110 12344556666664 3588999999999 5999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+.||||.+||+.....+...+.+-+-.|-|
T Consensus 160 --lADEPTGNLDp~~s~~im~lfeeinr~GtT 189 (223)
T COG2884 160 --LADEPTGNLDPDLSWEIMRLFEEINRLGTT 189 (223)
T ss_pred --eecCCCCCCChHHHHHHHHHHHHHhhcCcE
Confidence 999999999999999999998886666633
No 20
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=2.7e-32 Score=226.58 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=122.8
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---cccccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNL 77 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i 77 (190)
|..+++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..+
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~-~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT-HPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEecccchHHHHhcE
Confidence 345899999999999889999999999999999999999999999999999987 7889999999987642 122334
Q ss_pred CCChhh--------HHHHHHHHH------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 78 GFSAED--------RTENIRRVG------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
+|.+++ ..+++.... .+..++...++.. .+..+|+||+|| .+|+|++.+|+++
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ll-- 160 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVL-- 160 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEE--
Confidence 444433 223322111 1223444445432 367899999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+|||||++||+..++.+++.+++....|
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g 188 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARG 188 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998754334
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.5e-32 Score=219.15 Aligned_cols=149 Identities=23% Similarity=0.271 Sum_probs=117.8
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc---cccc--ccccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD---NLRH--GLNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~---~~~~--~~~~~i~ 78 (190)
+|.++++++.|+...++++++++|+.||.++|+||||||||||+|+|+|+. .|+.|.|.++|+ +... .-...+|
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-TPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-CCCCceEEECCEeccchhccchhhccee
Confidence 689999999999999999999999999999999999999999999999977 899999999998 4322 1112344
Q ss_pred CChhhH-------------------------HHHHHHHHHHHHHHHHcCcc-eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 79 FSAEDR-------------------------TENIRRVGEVAKLFADAGLI-CIASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 79 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
|..|+. .+...++.++..+++..++. .++..|||||+|| ++|||++.+|+++
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vL- 159 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVL- 159 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeE-
Confidence 444431 12223344444445444443 4699999999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHc
Q 029613 132 VFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+||||+.+||...++.+-+-+++
T Consensus 160 -LLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 160 -LLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred -eecCCchhhhHHHHHHHHHHHHH
Confidence 99999999999988776655554
No 22
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=9e-33 Score=211.93 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=124.9
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~ 78 (190)
+|.++|+.|+|+.+++++++||++++||+++|+|||||||||.+.++.|++ ++++|.|.+++.+++. -++..++
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-RPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE-ecCCceEEECCcccccCChHHHhhcCcc
Confidence 578999999999999999999999999999999999999999999999988 8899999999998764 2445678
Q ss_pred CChhhH--------HHHHHHHH--------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 79 FSAEDR--------TENIRRVG--------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 79 ~~~~~~--------~~~~~~~~--------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
|.+|+. .+++..+- .+-.+++++.+.. ....||||+|+| +|||||+.+|.|+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi- 161 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI- 161 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE-
Confidence 888862 23322211 1223444444433 256799999999 7999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+|||||++.||-....+.+.++..+-.|
T Consensus 162 -LLDEPFAGVDPiaV~dIq~iI~~L~~rg 189 (243)
T COG1137 162 -LLDEPFAGVDPIAVIDIQRIIKHLKDRG 189 (243)
T ss_pred -EecCCccCCCchhHHHHHHHHHHHHhCC
Confidence 9999999999999888888877654444
No 23
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=1.5e-31 Score=224.87 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=120.8
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~ 80 (190)
+++++|++++|+++.+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. ..+..++|.
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~-~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCceEEEECCEECCcchHHHhccEEEE
Confidence 689999999999989999999999999999999999999999999999987 7889999999987642 122334444
Q ss_pred hhh--------HHHHHHHHH------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 81 AED--------RTENIRRVG------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 81 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
+++ ..+++.... .+..++...++.. .+..+|+||+|| .+|++++.+|+++ +||
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL--iLD 197 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLL--ILD 197 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEE--EEE
Confidence 332 122222111 1223344455432 367799999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcCCCCC
Q 029613 136 MPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
|||++||+..++.+++.+++....|
T Consensus 198 EPt~gLD~~~r~~l~~~l~~l~~~g 222 (340)
T PRK13536 198 EPTTGLDPHARHLIWERLRSLLARG 222 (340)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998754334
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.97 E-value=1.9e-31 Score=210.85 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=116.6
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------cc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------LN 74 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------~~ 74 (190)
|++++|++++|++ ..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... .+
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-KPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEehhhcChhHHHHHH
Confidence 4789999999964 46999999999999999999999999999999999977 78899999999765320 12
Q ss_pred cccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613 75 KNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 75 ~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i 129 (190)
..++|.+++ ..+++.. ...+...+...++.. .+..+|+||+|| .+||+++.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 233443332 1222211 112333445555532 367899999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+ +|||||++||...++.+++.+++-+
T Consensus 160 l--llDEPt~~LD~~~~~~l~~~l~~~~ 185 (216)
T TIGR00960 160 L--LADEPTGNLDPELSRDIMRLFEEFN 185 (216)
T ss_pred E--EEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999988643
No 25
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=209.54 Aligned_cols=152 Identities=19% Similarity=0.235 Sum_probs=123.0
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i 77 (190)
+|++++|++..|+..++|+++||++++||+++|+|+||+|||||+|+|+|++ ++.+|+|.++|+++... .+..+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~-~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV-RPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 5899999999999999999999999999999999999999999999999987 77799999999998642 34456
Q ss_pred CCChhhH--------HHHHHH--------------HHHHHHHHHHcCc--ceeecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 78 GFSAEDR--------TENIRR--------------VGEVAKLFADAGL--ICIASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 78 ~~~~~~~--------~~~~~~--------------~~~~~~~~~~~~~--~~~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
+|+|+.+ +||+.. +..+..+|..+.- ......||||++|. +|||||+.+|+++
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL-- 158 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL-- 158 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE--
Confidence 6777652 333321 1223333322111 12367799999999 7999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcCC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+||||+.+|-|.-.+.+++.+++.+
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~ 183 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELR 183 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.8e-31 Score=223.64 Aligned_cols=151 Identities=17% Similarity=0.100 Sum_probs=119.4
Q ss_pred CCcccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--ccccc
Q 029613 1 MATVGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNL 77 (190)
Q Consensus 1 m~~~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i 77 (190)
|+ +++++|++++| ++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|+|.++|.++... ....+
T Consensus 1 m~-~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~i 78 (356)
T PRK11650 1 MA-GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-RITSGEIWIGGRVVNELEPADRDI 78 (356)
T ss_pred CC-EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCE
Confidence 54 68999999999 7788999999999999999999999999999999999977 78999999999876421 12233
Q ss_pred CCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 78 GFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
+|.+++ ..+++.. -..+..++...++.. .+..||+||+|| ++|||++.+|+++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll-- 156 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF-- 156 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence 443332 2222221 012334455555533 477899999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHc
Q 029613 133 FMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+|||||++||...++.+.+.+++
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999998888875
No 27
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=4e-31 Score=208.64 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=116.5
Q ss_pred ccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccc
Q 029613 4 VGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNK 75 (190)
Q Consensus 4 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~ 75 (190)
|++++|++++| ++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL-TPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcccCCHHHHHHHHh
Confidence 47899999999 4678999999999999999999999999999999999977 7789999999976532 1122
Q ss_pred ccCCChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 76 NLGFSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.++|.+++ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 33443332 12222110 12233444455532 367899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..+..+++.+++-
T Consensus 160 --lLDEPt~~LD~~~~~~l~~~l~~~ 183 (214)
T TIGR02673 160 --LADEPTGNLDPDLSERILDLLKRL 183 (214)
T ss_pred --EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 28
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.1e-31 Score=207.19 Aligned_cols=149 Identities=20% Similarity=0.234 Sum_probs=115.6
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAE 82 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~ 82 (190)
++++|++++|++.++++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. .....++|.++
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 46889999998888999999999999999999999999999999999987 7889999999976532 11122333333
Q ss_pred h--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 83 D--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 83 ~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++ +||||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~l--llDEP 157 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLL--LLDEP 157 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence 2 1122111 011233444555532 367799999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHHcC
Q 029613 138 LELCEARDPKGLYKLARAG 156 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~~~ 156 (190)
|++||+..++.+++.+++-
T Consensus 158 t~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03259 158 LSALDAKLREELREELKEL 176 (213)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 29
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=6e-31 Score=206.52 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=116.9
Q ss_pred ccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-ccccccCCChhh
Q 029613 6 NSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-GLNKNLGFSAED 83 (190)
Q Consensus 6 ~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-~~~~~i~~~~~~ 83 (190)
+++|++++|++ .++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|.+++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 46899999987 78999999999999999999999999999999999977 7889999999987532 111223333332
Q ss_pred ---------HHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613 84 ---------RTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC 141 (190)
Q Consensus 84 ---------~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l 141 (190)
..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++|
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llDEPt~~L 157 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLL--IFDEPTSGL 157 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEE--EEeCCCccC
Confidence 12222110 12334455555533 367799999999 6999999999999 999999999
Q ss_pred hhcChHHHHHHHHcCCCCC
Q 029613 142 EARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 142 d~~~~~~~~~~~~~~~~~~ 160 (190)
|+..++.+.+.+++-...|
T Consensus 158 D~~~~~~l~~~l~~~~~~~ 176 (205)
T cd03226 158 DYKNMERVGELIRELAAQG 176 (205)
T ss_pred CHHHHHHHHHHHHHHHHCC
Confidence 9999999999998653334
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.3e-31 Score=210.06 Aligned_cols=149 Identities=21% Similarity=0.193 Sum_probs=116.0
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccccc
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNKNL 77 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~~i 77 (190)
++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL-RPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccChhhHHHHhcce
Confidence 46889999998888999999999999999999999999999999999977 7889999999976532 112234
Q ss_pred CCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 78 GFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
+|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll- 158 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL- 158 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE-
Confidence 443332 1222211 011233445555532 367799999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+.+.+++-
T Consensus 159 -llDEPt~~LD~~~~~~l~~~l~~~ 182 (235)
T cd03261 159 -LYDEPTAGLDPIASGVIDDLIRSL 182 (235)
T ss_pred -EecCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999988864
No 31
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.6e-31 Score=209.48 Aligned_cols=153 Identities=23% Similarity=0.277 Sum_probs=118.6
Q ss_pred CC-cccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---
Q 029613 1 MA-TVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--- 72 (190)
Q Consensus 1 m~-~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--- 72 (190)
|+ +|++++|++++|+. .++++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++...
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-TPTSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred CCCceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCCHH
Confidence 55 47899999999964 46999999999999999999999999999999999987 78899999999775321
Q ss_pred ----c-ccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHH
Q 029613 73 ----L-NKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRA 122 (190)
Q Consensus 73 ----~-~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iara 122 (190)
. ...++|.+++ ..+++.. -..+..++...++.. .+..+|+||+|| .+||+
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 0 1223433332 2222211 012334455555532 367799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 160 l~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 191 (233)
T PRK11629 160 LVNNPRLV--LADEPTGNLDARNADSIFQLLGEL 191 (233)
T ss_pred HhcCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999988864
No 32
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.97 E-value=9.1e-31 Score=207.16 Aligned_cols=149 Identities=24% Similarity=0.232 Sum_probs=115.3
Q ss_pred cccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--------
Q 029613 5 GNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------- 72 (190)
Q Consensus 5 l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------- 72 (190)
++++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-CCCceeEEECCEehhhcchhHHHHH
Confidence 468899999976 68999999999999999999999999999999999987 78899999999765321
Q ss_pred cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
....++|.+++ ..+++.. -..+..++...++.. .+..+|+||+|| .+||+++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 11223333322 1222211 012334455555532 367799999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+++.+++-
T Consensus 160 ~ll--lLDEP~~~LD~~~~~~l~~~l~~~ 186 (218)
T cd03255 160 KII--LADEPTGNLDSETGKEVMELLREL 186 (218)
T ss_pred CEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999988864
No 33
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1e-30 Score=207.31 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=114.5
Q ss_pred cccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC
Q 029613 5 GNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS 80 (190)
Q Consensus 5 l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~ 80 (190)
++++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ....++|.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~-~~~~i~~v 78 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-RPTSGEVLVDGEPVTG-PGPDRGYV 78 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcc-ccCcEEEE
Confidence 468899999987 68999999999999999999999999999999999977 7789999999976532 11122222
Q ss_pred hhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 81 AED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 81 ~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++ +||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll--lLD 156 (220)
T cd03293 79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVL--LLD 156 (220)
T ss_pred ecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE--EEC
Confidence 221 1222211 112334455555532 367899999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcC
Q 029613 136 MPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||++||+..++.+++.+++-
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 157 EPFSALDALTREQLQEELLDI 177 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 34
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.7e-31 Score=206.55 Aligned_cols=149 Identities=14% Similarity=0.185 Sum_probs=115.1
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh-
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED- 83 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~- 83 (190)
++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++.......++|.+++
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCCchhHHHHccEEEeccCC
Confidence 46889999998888999999999999999999999999999999999977 7889999999977632112222222221
Q ss_pred -------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 84 -------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 84 -------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l--llDEP~~ 157 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL--ILDEPFS 157 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCc
Confidence 12222110 12233444455432 367799999999 6999999999999 9999999
Q ss_pred hhhhcChHHHHHHHHcC
Q 029613 140 LCEARDPKGLYKLARAG 156 (190)
Q Consensus 140 ~ld~~~~~~~~~~~~~~ 156 (190)
+||+..++.+++.+++-
T Consensus 158 ~LD~~~~~~~~~~l~~~ 174 (210)
T cd03269 158 GLDPVNVELLKDVIREL 174 (210)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 35
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.8e-31 Score=222.03 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=118.2
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~ 81 (190)
+|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... .+..++|..
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vf 84 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFIDGEDVTHRSIQQRDICMVF 84 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 789999999999888999999999999999999999999999999999977 78999999999876421 112233333
Q ss_pred hh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 82 ED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
++ ..+++.. -..+..++...++. ..+..||+||+|| ++||+++.+|+++ +|||
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL--LLDE 162 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL--LFDE 162 (351)
T ss_pred CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEcC
Confidence 32 2222221 11223344444443 3478899999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHcC
Q 029613 137 PLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++||...++.+.+.+++.
T Consensus 163 P~s~LD~~~r~~l~~~l~~l 182 (351)
T PRK11432 163 PLSNLDANLRRSMREKIREL 182 (351)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999998888753
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=7.7e-31 Score=217.55 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=117.8
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCC
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGF 79 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~ 79 (190)
.+++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++... .+..++|
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-SPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcccHHHHhhcEEE
Confidence 4789999999999888999999999999999999999999999999999977 78899999999765321 1223344
Q ss_pred Chhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 80 SAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 80 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
.+++ ..+++... ..+..++...++.. .+..||+||+|| .+||+++.+|+++ +|
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--lL 159 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLL--IL 159 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EE
Confidence 3332 12222110 11223344445432 367899999999 6999999999999 99
Q ss_pred eCCchhhhhcChHHHHHHHHcC
Q 029613 135 NMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 135 DEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||||++||+..++.+++.+++.
T Consensus 160 DEPt~gLD~~~~~~l~~~l~~~ 181 (303)
T TIGR01288 160 DEPTTGLDPHARHLIWERLRSL 181 (303)
T ss_pred eCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998874
No 37
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=8.8e-31 Score=209.91 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=114.7
Q ss_pred CCcccccCcceeccCc---------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 1 MATVGNSTNIFWQESP---------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~---------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
|.++++++|+++.|.. +.++++|||++.+||+++|+|+|||||||+.|+|.|++ .|++|+|+|+|+++..
T Consensus 1 ~~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGEILFEGKDITK 79 (268)
T ss_pred CCceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCceEEEcCcchhh
Confidence 3457899999999842 47899999999999999999999999999999999977 8899999999998753
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHcCc-----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 72 GLNKNLGFSAEDRTENIRRVGEVAKLFADAGL-----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 72 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~ 145 (190)
+...+. . ..+.+++...++ ..++.++||||+|| .||||++.+|+++ ++|||+|+||...
T Consensus 80 -------~~~~~~---~---~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~li--V~DEpvSaLDvSi 144 (268)
T COG4608 80 -------LSKEER---R---ERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLI--VADEPVSALDVSV 144 (268)
T ss_pred -------cchhHH---H---HHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEE--EecCchhhcchhH
Confidence 222111 1 233344444444 34689999999999 6999999999999 9999999999999
Q ss_pred hHHHHHHHHc
Q 029613 146 PKGLYKLARA 155 (190)
Q Consensus 146 ~~~~~~~~~~ 155 (190)
+.++..++++
T Consensus 145 qaqIlnLL~d 154 (268)
T COG4608 145 QAQILNLLKD 154 (268)
T ss_pred HHHHHHHHHH
Confidence 8888877776
No 38
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=1.3e-30 Score=209.35 Aligned_cols=150 Identities=21% Similarity=0.263 Sum_probs=116.0
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccc
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNK 75 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~ 75 (190)
|++++|++++|+ +.++++++||++.+|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. ..+.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 478999999998 778999999999999999999999999999999999977 7889999999976532 0122
Q ss_pred ccCCChhh--------HHHHHHH--------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHH
Q 029613 76 NLGFSAED--------RTENIRR--------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRA 122 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iara 122 (190)
.++|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 23333322 1122210 012233444445432 367799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 160 l~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 191 (243)
T TIGR02315 160 LAQQPDLI--LADEPIASLDPKTSKQVMDYLKRI 191 (243)
T ss_pred HhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999988764
No 39
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-30 Score=200.65 Aligned_cols=152 Identities=22% Similarity=0.185 Sum_probs=114.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCcccccc------c
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRHG------L 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~~------~ 73 (190)
.++++|+++.|+.+.+|++||+.|.++++++|+|||||||||++|+++.+.. -+ -.|.|.++|+++... +
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 5789999999999999999999999999999999999999999999999653 11 248899999987642 3
Q ss_pred ccccCCChhh-------HHHHHHH-----------HHH-HHHHHHHcCcc--------eeecccCccHHHH-HHHHHhCC
Q 029613 74 NKNLGFSAED-------RTENIRR-----------VGE-VAKLFADAGLI--------CIASLISPYRKDR-DACRAMLP 125 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~-----------~~~-~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall~ 125 (190)
+..+|++.|. ..++... +.+ +...+....++ ..+..|||||+|| .|||+++.
T Consensus 87 Rr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv 166 (253)
T COG1117 87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred HHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc
Confidence 4445554443 2222211 111 11122222332 2355699999999 69999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|+++ +||||||+||+-...++=+.+.+.+
T Consensus 167 ~PeVl--LmDEPtSALDPIsT~kIEeLi~eLk 196 (253)
T COG1117 167 KPEVL--LMDEPTSALDPISTLKIEELITELK 196 (253)
T ss_pred CCcEE--EecCcccccCchhHHHHHHHHHHHH
Confidence 99999 9999999999999888777777633
No 40
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=5.6e-31 Score=221.37 Aligned_cols=150 Identities=23% Similarity=0.222 Sum_probs=118.7
Q ss_pred ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613 4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------- 72 (190)
||+++|++++|++ ..+++++||++++|++++|+|+||||||||+|+|+|++ ++.+|.|.++|.++...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHH
Confidence 5789999999952 47999999999999999999999999999999999977 78999999999876431
Q ss_pred cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
.+..++|.+++ ..+++.. ...+.+++...++.. .+..||+||+|| .||||++.+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 12334444433 1222211 112344555566643 478899999999 5999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ ++||||++||+..++.+++.+++-
T Consensus 160 ~iL--LlDEPts~LD~~t~~~i~~lL~~l 186 (343)
T TIGR02314 160 KVL--LCDEATSALDPATTQSILELLKEI 186 (343)
T ss_pred CEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999888874
No 41
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=1.1e-30 Score=222.07 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=119.6
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccC
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLG 78 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~ 78 (190)
|.++|+++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... .+..++
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEE
Confidence 345789999999999888999999999999999999999999999999999977 78899999999876421 112233
Q ss_pred CChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 79 FSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
|..++ ..+++.. -..+..++...++.. .+..||+||+|| ++||+++.+|+++ +
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll--L 167 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL--L 167 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--E
Confidence 33332 2233221 012333444445533 478899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHc
Q 029613 134 MNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~ 155 (190)
||||+++||...++.+.+.+++
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~ 189 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKA 189 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999888876
No 42
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=3e-30 Score=198.96 Aligned_cols=138 Identities=22% Similarity=0.232 Sum_probs=111.5
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHH
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRT 85 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~ 85 (190)
+++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++.. +......
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~~-------~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLAS-------LSPKELA 72 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCc-------CCHHHHH
Confidence 4689999998888999999999999999999999999999999999977 7889999999987642 2222222
Q ss_pred HHHHHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 86 ENIRRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
..+..+.+ ++...++. ..+..+|+||+|| .+||+++.+|+++ +|||||++||...++.+++.+++-
T Consensus 73 ~~i~~~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llDEP~~~LD~~~~~~~~~~l~~~ 143 (180)
T cd03214 73 RKIAYVPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPIL--LLDEPTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred HHHhHHHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE--EEeCCccCCCHHHHHHHHHHHHHH
Confidence 22222222 44444443 2367799999999 6999999999999 999999999999999999888764
No 43
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.5e-30 Score=208.82 Aligned_cols=150 Identities=20% Similarity=0.212 Sum_probs=115.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~ 81 (190)
+++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... ....++|.+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCccccceEEEe
Confidence 588999999998888999999999999999999999999999999999977 78899999999765321 111222222
Q ss_pred hh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 82 ED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 82 ~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll-- 158 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL-- 158 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence 21 1122110 011233444455532 367799999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+++.+++-
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~ 182 (239)
T cd03296 159 LLDEPFGALDAKVRKELRRWLRRL 182 (239)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 44
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=1.2e-30 Score=206.37 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=117.1
Q ss_pred ccccCcceeccCcc----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccc
Q 029613 4 VGNSTNIFWQESPI----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKN 76 (190)
Q Consensus 4 ~l~~~~l~~~~~~~----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~ 76 (190)
|++++|++++|++. ++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEEcccCHHHHHhh
Confidence 47899999999876 7999999999999999999999999999999999977 7889999999976532 11222
Q ss_pred cCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 77 LGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 77 i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
++|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il- 158 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL- 158 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE-
Confidence 3333322 1222211 112233455555532 367799999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||+..++.+++.+++-.
T Consensus 159 -llDEPt~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 159 -LLDEPTTGLDVMATRALREFIRQLR 183 (218)
T ss_pred -EEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998643
No 45
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.4e-30 Score=206.72 Aligned_cols=150 Identities=22% Similarity=0.210 Sum_probs=117.2
Q ss_pred ccccCcceeccCcc----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613 4 VGNSTNIFWQESPI----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~~----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------- 72 (190)
|++++|++++|++. ++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE-RPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcccCCHHHHHH
Confidence 47899999999876 8999999999999999999999999999999999987 78899999999875321
Q ss_pred cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
....++|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 12233433332 1222211 112233445555532 367799999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+++.+++.
T Consensus 160 ~ll--lLDEP~~~LD~~~~~~l~~~l~~~ 186 (233)
T cd03258 160 KVL--LCDEATSALDPETTQSILALLRDI 186 (233)
T ss_pred CEE--EecCCCCcCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999988864
No 46
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=2.3e-30 Score=206.18 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=116.6
Q ss_pred CcccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----
Q 029613 2 ATVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----- 72 (190)
Q Consensus 2 ~~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----- 72 (190)
.+|++++|++++|++ ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++...
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeeEEECCEEcccCCHHHH
Confidence 458999999999975 35999999999999999999999999999999999977 78899999999765321
Q ss_pred --c-ccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhC
Q 029613 73 --L-NKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAML 124 (190)
Q Consensus 73 --~-~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall 124 (190)
. ...++|.+++ ..+++.. -.++..++...++.. .+..+|+||+|| .+||+++
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~ 162 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 0 1123332222 1122211 012333444555532 367899999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||+..++.+.+.+++-
T Consensus 163 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 192 (228)
T PRK10584 163 GRPDVL--FADEPTGNLDRQTGDKIADLLFSL 192 (228)
T ss_pred cCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999998764
No 47
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=9.8e-31 Score=220.88 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=119.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~ 81 (190)
+|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|+++.. .....++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 689999999999888999999999999999999999999999999999977 7899999999987642 1122334433
Q ss_pred hh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 82 ED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
++ ..+++.. -..+..++...++.. .+..||+||+|| ++||+++.+|+++ +|||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ll--LLDE 160 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLL--LLDE 160 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcC
Confidence 32 2222221 112334455555543 478899999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHc
Q 029613 137 PLELCEARDPKGLYKLARA 155 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~ 155 (190)
|+++||...++.+.+.+++
T Consensus 161 P~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 161 PLSALDARVREHLRTEIRQ 179 (353)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999999999999888876
No 48
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=213.26 Aligned_cols=153 Identities=16% Similarity=0.192 Sum_probs=120.2
Q ss_pred CCcccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccc
Q 029613 1 MATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNK 75 (190)
Q Consensus 1 m~~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~ 75 (190)
|+++++++|++++|+ ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ....
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~ 79 (274)
T PRK13647 1 MDNIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRVKVMGREVNAENEKWVRS 79 (274)
T ss_pred CCceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHh
Confidence 777899999999996 567999999999999999999999999999999999977 7889999999977632 1122
Q ss_pred ccCCChhhH---------HHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613 76 NLGFSAEDR---------TENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 76 ~i~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i 129 (190)
.++|.+++. .+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|++
T Consensus 80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 159 (274)
T PRK13647 80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV 159 (274)
T ss_pred hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 344444321 122211 012233444555532 377899999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+..+..+.+.+++-
T Consensus 160 l--llDEPt~~LD~~~~~~l~~~l~~~ 184 (274)
T PRK13647 160 I--VLDEPMAYLDPRGQETLMEILDRL 184 (274)
T ss_pred E--EEECCCcCCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999998764
No 49
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=2.6e-30 Score=203.59 Aligned_cols=148 Identities=22% Similarity=0.269 Sum_probs=114.1
Q ss_pred ccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 6 NSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 6 ~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
+++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccCCHHHHHhhceE
Confidence 46899999987 78999999999999999999999999999999999987 7889999999976532 11222333
Q ss_pred Chhh---------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 80 SAED---------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 80 ~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
.+++ ..+++.. ...+..++...++. ..+..+|+||+|| .+||+++.+|+++ +
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll--l 157 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL--L 157 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE--E
Confidence 3332 1122211 01122344445543 2367899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcC
Q 029613 134 MNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||||++||+..++.+++.+++-
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~ 180 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKL 180 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 50
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.5e-30 Score=207.41 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=115.1
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------ccccc
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNKN 76 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~~ 76 (190)
++++|++++|++ ..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. .....
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEeccccCHhHHHHHHhc
Confidence 468899999987 78999999999999999999999999999999999977 7789999999976532 11223
Q ss_pred cCCChhh--------HHHHHHH--------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613 77 LGFSAED--------RTENIRR--------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM 123 (190)
Q Consensus 77 i~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral 123 (190)
++|.+++ ..+++.. ...+..++...++.. .+..||+||+|| .+||++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 3333332 1222210 012223444455532 367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..++.+++.+++.
T Consensus 160 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 190 (241)
T cd03256 160 MQQPKLI--LADEPVASLDPASSRQVMDLLKRI 190 (241)
T ss_pred hcCCCEE--EEeCccccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999988864
No 51
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=2.4e-30 Score=204.19 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=112.4
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh--
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED-- 83 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~-- 83 (190)
+++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .+..++|.+++
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~-~~~~i~~v~q~~~ 78 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-KPTSGSIRVFGKPLEK-ERKRIGYVPQRRS 78 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCccHHH-HHhheEEeccccc
Confidence 4689999998888999999999999999999999999999999999977 7889999999976421 11112221111
Q ss_pred --------HHHHHHH----------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 84 --------RTENIRR----------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 84 --------~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
..+++.. -..+..++...++. ..+..+|+||+|| .+||+++.+|+++ +|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--ll 156 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL--LL 156 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE--EE
Confidence 1111110 01223344444443 2367899999999 6999999999999 99
Q ss_pred eCCchhhhhcChHHHHHHHHcC
Q 029613 135 NMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 135 DEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||||++||+..++.+.+.+++-
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~ 178 (213)
T cd03235 157 DEPFAGVDPKTQEDIYELLREL 178 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 52
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=1.7e-30 Score=222.35 Aligned_cols=152 Identities=16% Similarity=0.228 Sum_probs=118.8
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
+||+++|++++|+++.+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. ..+..++
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll-~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL-TPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 3789999999999999999999999999999999999999999999999987 7889999999977542 1122233
Q ss_pred CChhh--------HHHHHH----------------HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED--------RTENIR----------------RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i 129 (190)
+.+++ ..+++. .-..+...+...++.. .+..||+||+|| .+||+++++|++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i 160 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 33332 111110 0112334445555532 367899999999 599999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+ +|||||++||+..+..+.+.+++..
T Consensus 161 L--LLDEPtsgLD~~~~~~l~~lL~~l~ 186 (402)
T PRK09536 161 L--LLDEPTASLDINHQVRTLELVRRLV 186 (402)
T ss_pred E--EEECCcccCCHHHHHHHHHHHHHHH
Confidence 9 9999999999999999998888643
No 53
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.4e-30 Score=206.52 Aligned_cols=149 Identities=14% Similarity=0.204 Sum_probs=115.1
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCCh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFSA 81 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~~ 81 (190)
++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....++|.+
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecCcChHHHhhcEEEec
Confidence 46889999998888999999999999999999999999999999999977 7889999999876531 1112233333
Q ss_pred hh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 82 ED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
++ ..+++.. ...+..++..+++.. .+..||+||+|| .+||+++.+|+++ +|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ll--llDE 157 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVL--FLDE 157 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcC
Confidence 22 1122111 012233445555532 367799999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHcC
Q 029613 137 PLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~~ 156 (190)
||++||+..++.+++.+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred CccCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 54
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=2.5e-30 Score=203.36 Aligned_cols=149 Identities=18% Similarity=0.180 Sum_probs=115.6
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAE 82 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~ 82 (190)
++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....++|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCCcccchHHHHhhEEEecC
Confidence 46889999998888999999999999999999999999999999999987 7889999999987532 11122333332
Q ss_pred h--------HHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613 83 D--------RTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC 141 (190)
Q Consensus 83 ~--------~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l 141 (190)
+ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++|
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--llDEPt~~L 157 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLL--ILDEPTNGL 157 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE--EECCCcccC
Confidence 2 22222111 12333444455532 367799999999 6999999999999 999999999
Q ss_pred hhcChHHHHHHHHcC
Q 029613 142 EARDPKGLYKLARAG 156 (190)
Q Consensus 142 d~~~~~~~~~~~~~~ 156 (190)
|+..++.+++.+++-
T Consensus 158 D~~~~~~l~~~l~~~ 172 (208)
T cd03268 158 DPDGIKELRELILSL 172 (208)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888864
No 55
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=2.5e-30 Score=208.70 Aligned_cols=152 Identities=22% Similarity=0.209 Sum_probs=117.7
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---------
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------- 71 (190)
|. |++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 1 m~-~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 1 MS-AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-QPEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred CC-cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccccccchhh
Confidence 53 789999999998888999999999999999999999999999999999977 7889999999876531
Q ss_pred ---ccccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHH
Q 029613 72 ---GLNKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRA 122 (190)
Q Consensus 72 ---~~~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iara 122 (190)
..+..++|.+++ ..+++.. -..+..++...++.. .+..+|+||+|| .+||+
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHH
Confidence 111223333322 1222211 011233445555532 367799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||...++.+++.+++.
T Consensus 159 l~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 190 (250)
T PRK11264 159 LAMRPEVI--LFDEPTSALDPELVGEVLNTIRQL 190 (250)
T ss_pred HhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999888764
No 56
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-30 Score=218.77 Aligned_cols=150 Identities=20% Similarity=0.229 Sum_probs=117.3
Q ss_pred ccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------c
Q 029613 4 VGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------G 72 (190)
Q Consensus 4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~ 72 (190)
||+++|++++|+ .+.+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-RPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHH
Confidence 578999999997 367999999999999999999999999999999999987 7889999999987642 1
Q ss_pred cccccCCChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 73 LNKNLGFSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 73 ~~~~i~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
.+..++|.+++ ..+++... ..+..++...++.. .+..||+||+|| .+||+++.+|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 12234443332 22222111 12233455555532 367899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+++.+++-
T Consensus 160 ~iL--lLDEPts~LD~~~~~~l~~~L~~l 186 (343)
T PRK11153 160 KVL--LCDEATSALDPATTRSILELLKDI 186 (343)
T ss_pred CEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999988764
No 57
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.1e-30 Score=210.08 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=115.2
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~ 83 (190)
|++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... ...++|.+++
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~-~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSITLDGKPVEGP-GAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCC-CCcEEEEeCC
Confidence 478999999998888999999999999999999999999999999999977 78899999998765321 1111221111
Q ss_pred --------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 84 --------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 84 --------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
..+++.. ...+..++...++.. .+..||+||+|| .+||+++.+|+++ +|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll--lLDEPt 156 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL--LLDEPF 156 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCC
Confidence 1222211 012334455555532 367799999999 6999999999999 999999
Q ss_pred hhhhhcChHHHHHHHHcC
Q 029613 139 ELCEARDPKGLYKLARAG 156 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~~ 156 (190)
++||+..++.+.+.+++-
T Consensus 157 ~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 157 GALDAFTREQMQTLLLKL 174 (255)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999888763
No 58
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.6e-30 Score=195.08 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=112.0
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCC---C
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGF---S 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~---~ 80 (190)
.|+++|+.|+||...+|+++|++.++|+++.|+|.|||||||++|||+= +..|..|.|.++|+.+.......-.. +
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~-LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF-LEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh-hcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 5889999999999999999999999999999999999999999999986 55899999999998875422111111 1
Q ss_pred hhhHHHHHH-----------------------------------HHHHHHHHHHHcCcc----eeecccCccHHHH-HHH
Q 029613 81 AEDRTENIR-----------------------------------RVGEVAKLFADAGLI----CIASLISPYRKDR-DAC 120 (190)
Q Consensus 81 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~ia 120 (190)
.++...... .+.+....+...|+. .++..+||||+|| +||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 111111000 011112233334442 3688999999999 599
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
|||+.+|+++ ++|||||+||+..+-.++..+++
T Consensus 165 RaLameP~vm--LFDEPTSALDPElVgEVLkv~~~ 197 (256)
T COG4598 165 RALAMEPEVM--LFDEPTSALDPELVGEVLKVMQD 197 (256)
T ss_pred HHHhcCCceE--eecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999 99999999999987666655554
No 59
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=1.9e-30 Score=219.20 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=118.2
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~ 81 (190)
+|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|+++.. .....++|.+
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 588999999999888999999999999999999999999999999999977 7889999999987642 1112233333
Q ss_pred hh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 82 ED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 82 ~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
++ ..+++.. ...+..++...++.. .+..||+||+|| ++||+++.+|+++
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ll-- 158 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQIL-- 158 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence 32 1222211 112334455555532 477899999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||...++.+.+.+++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~L~~l 182 (353)
T PRK10851 159 LLDEPFGALDAQVRKELRRWLRQL 182 (353)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999888763
No 60
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.96 E-value=2.3e-30 Score=210.10 Aligned_cols=150 Identities=18% Similarity=0.142 Sum_probs=116.0
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE 82 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~ 82 (190)
++|+++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ....++|.++
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~-~~~~i~~v~q 88 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-TPSAGELLAGTAPLAE-AREDTRLMFQ 88 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEHHH-hhCceEEEec
Confidence 3689999999999888999999999999999999999999999999999977 7889999998865421 1111222211
Q ss_pred --------hHHHHHHH------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613 83 --------DRTENIRR------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA 143 (190)
Q Consensus 83 --------~~~~~~~~------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~ 143 (190)
...+++.. -..+..++...++.. .+..||+||+|| .+||+++.+|+++ +|||||++||+
T Consensus 89 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll--lLDEPt~~LD~ 166 (257)
T PRK11247 89 DARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL--LLDEPLGALDA 166 (257)
T ss_pred CccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCCCCCH
Confidence 12222221 112334455555532 367899999999 6999999999999 99999999999
Q ss_pred cChHHHHHHHHcC
Q 029613 144 RDPKGLYKLARAG 156 (190)
Q Consensus 144 ~~~~~~~~~~~~~ 156 (190)
..++.+++.+++.
T Consensus 167 ~~~~~l~~~L~~~ 179 (257)
T PRK11247 167 LTRIEMQDLIESL 179 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888753
No 61
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.1e-30 Score=220.15 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=118.5
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccC
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLG 78 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~ 78 (190)
|+ +++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++... ....++
T Consensus 1 m~-~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 1 MA-SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDLFIGEKRMNDVPPAERGVG 78 (369)
T ss_pred CC-EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHhHCCEE
Confidence 53 689999999999888999999999999999999999999999999999977 78899999999776321 112233
Q ss_pred CChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 79 FSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
|.+++ ..+++.. ...+..++...++.. .+..||+||+|| ++||+++.+|+++ +
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL--L 156 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF--L 156 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--E
Confidence 33332 2222221 012334455555532 367899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcC
Q 029613 134 MNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||||++||...++.+.+.+++.
T Consensus 157 LDEPts~LD~~~~~~l~~~L~~l 179 (369)
T PRK11000 157 LDEPLSNLDAALRVQMRIEISRL 179 (369)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999888887753
No 62
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=2.9e-30 Score=202.64 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=116.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~ 80 (190)
|++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....++|.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA-RPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccchHHhhhheEEe
Confidence 478999999999888999999999999999999999999999999999977 7889999999976532 111112222
Q ss_pred hh--------hHHHHHHHH---------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 81 AE--------DRTENIRRV---------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 81 ~~--------~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
++ ...+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--llDEPt 157 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLW--ILDEPF 157 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEE--EEeCCC
Confidence 11 122222111 12233445555532 367799999999 6999999999999 999999
Q ss_pred hhhhhcChHHHHHHHHcC
Q 029613 139 ELCEARDPKGLYKLARAG 156 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~~ 156 (190)
++||...++.+++.+++-
T Consensus 158 ~~LD~~~~~~l~~~l~~~ 175 (204)
T PRK13538 158 TAIDKQGVARLEALLAQH 175 (204)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999988864
No 63
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.96 E-value=3.5e-30 Score=203.09 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=114.9
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCChh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSAE 82 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~~ 82 (190)
++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++... ....++|.++
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCcccceEEEEec
Confidence 46889999998888999999999999999999999999999999999977 78899999999765321 1112333322
Q ss_pred h--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 83 D--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 83 ~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++ +||||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll--llDEP 157 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVF--LMDEP 157 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence 2 1122211 012233445555532 367799999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHHcC
Q 029613 138 LELCEARDPKGLYKLARAG 156 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~~~ 156 (190)
|++||+..++.+++.+++.
T Consensus 158 t~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRL 176 (213)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 64
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.96 E-value=3.8e-30 Score=203.84 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=114.9
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~ 79 (190)
|+++|+++.|++ +++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .....++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccchHHHhhhEEE
Confidence 468899999986 78999999999999999999999999999999999977 7889999999977532 11122333
Q ss_pred Chhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 80 SAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 80 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
.+++ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--ll 157 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVL--LL 157 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE--EE
Confidence 3322 12222110 12233444455532 367799999999 6999999999999 99
Q ss_pred eCCchhhhhcChHHHHHHHHcC
Q 029613 135 NMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 135 DEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||||++||+..++.+++.+++-
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~ 179 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEV 179 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 65
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.6e-30 Score=202.59 Aligned_cols=150 Identities=18% Similarity=0.185 Sum_probs=115.9
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccCCChh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLGFSAE 82 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~~~~~ 82 (190)
|++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++... .+..++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-PPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEeCcchhhHhhcEEecC
Confidence 689999999998888999999999999999999999999999999999977 78899999999764211 1112222221
Q ss_pred --------hHHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613 83 --------DRTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC 141 (190)
Q Consensus 83 --------~~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l 141 (190)
...+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++|
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--llDEPt~~L 158 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIW--ILDEPTAAL 158 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEE--EEeCCcccC
Confidence 112222110 12334445555532 356799999999 6999999999999 999999999
Q ss_pred hhcChHHHHHHHHcC
Q 029613 142 EARDPKGLYKLARAG 156 (190)
Q Consensus 142 d~~~~~~~~~~~~~~ 156 (190)
|...++.+.+.+++-
T Consensus 159 D~~~~~~l~~~l~~~ 173 (207)
T PRK13539 159 DAAAVALFAELIRAH 173 (207)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998863
No 66
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.96 E-value=3.6e-30 Score=204.09 Aligned_cols=150 Identities=23% Similarity=0.243 Sum_probs=115.0
Q ss_pred ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613 4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------- 72 (190)
+++++|++++|++ .++++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcCHhHHHH
Confidence 3678999999964 46999999999999999999999999999999999977 78899999999765320
Q ss_pred cc-cccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613 73 LN-KNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 73 ~~-~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~ 126 (190)
.+ ..++|.+++ ..+++.. ...+..++...++.. .+..||+||+|| .+||+++.+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 01 223333322 1222211 012233445555532 367899999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||...++.+.+.+++.
T Consensus 160 p~il--llDEPt~~LD~~~~~~l~~~l~~~ 187 (221)
T TIGR02211 160 PSLV--LADEPTGNLDNNNAKIIFDLMLEL 187 (221)
T ss_pred CCEE--EEeCCCCcCCHHHHHHHHHHHHHH
Confidence 9999 999999999999999999988754
No 67
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.96 E-value=2.8e-30 Score=203.67 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=116.2
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------ccccc
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNKN 76 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~~ 76 (190)
++++|++++|++ +.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 467899999964 67999999999999999999999999999999999977 7889999999976532 11222
Q ss_pred cCCChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 77 LGFSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 77 i~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
++|.+++ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll- 158 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTIL- 158 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEE-
Confidence 3333332 12222110 12233444555432 367799999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+|||||++||+..++.+++.+++...+|
T Consensus 159 -llDEPt~~LD~~~~~~~~~~l~~~~~~~ 186 (214)
T cd03292 159 -IADEPTGNLDPDTTWEIMNLLKKINKAG 186 (214)
T ss_pred -EEeCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999998743334
No 68
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=4.8e-30 Score=200.86 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=116.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~ 80 (190)
|++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|+++|.++... ....++|.
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEECCCccccCHHHHHhheEEe
Confidence 478999999998888999999999999999999999999999999999977 78899999999876421 12223333
Q ss_pred hhh--------HHHHHHHH-------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613 81 AED--------RTENIRRV-------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL 140 (190)
Q Consensus 81 ~~~--------~~~~~~~~-------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ 140 (190)
+++ ..+++... ..+..++...++.. .+..+|+|++|| .+||+++.+|+++ +|||||++
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l--ilDEP~~~ 157 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW--LLDEPLVA 157 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE--EEeCCCcc
Confidence 221 12222210 12333444444322 256799999999 6999999999999 99999999
Q ss_pred hhhcChHHHHHHHHcC
Q 029613 141 CEARDPKGLYKLARAG 156 (190)
Q Consensus 141 ld~~~~~~~~~~~~~~ 156 (190)
||...++.+.+.+++-
T Consensus 158 LD~~~~~~l~~~l~~~ 173 (200)
T PRK13540 158 LDELSLLTIITKIQEH 173 (200)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999999864
No 69
>PRK10908 cell division protein FtsE; Provisional
Probab=99.96 E-value=3.7e-30 Score=204.34 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=116.0
Q ss_pred ccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------ccc
Q 029613 4 VGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------LNK 75 (190)
Q Consensus 4 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------~~~ 75 (190)
|++++|+++.| ++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++... .+.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCChhHHHHHHh
Confidence 47899999999 6678999999999999999999999999999999999977 78899999999765320 122
Q ss_pred ccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 76 NLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.++|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 23333322 1122211 011233444555432 367899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+.+.+++-
T Consensus 160 --llDEPt~~LD~~~~~~l~~~l~~~ 183 (222)
T PRK10908 160 --LADEPTGNLDDALSEGILRLFEEF 183 (222)
T ss_pred --EEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999888864
No 70
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.96 E-value=4.5e-30 Score=202.40 Aligned_cols=150 Identities=23% Similarity=0.252 Sum_probs=115.7
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------ccccccC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~i~ 78 (190)
++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccchhHHHHHhcce
Confidence 46889999998888999999999999999999999999999999999977 7889999999976521 1122333
Q ss_pred CChhh--------HHHHHHH-------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 79 FSAED--------RTENIRR-------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 79 ~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
|.+++ ..+++.. ...+..++...++. ..+..+|+||+|| .+||+++.+|+++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll-- 157 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVM-- 157 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEE--
Confidence 33332 1222211 01223344444543 2367899999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcCC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||+..++.+++.+++-.
T Consensus 158 llDEP~~~LD~~~~~~l~~~l~~~~ 182 (213)
T cd03262 158 LFDEPTSALDPELVGEVLDVMKDLA 182 (213)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998643
No 71
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.1e-30 Score=207.32 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=116.8
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc----------ccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR----------HGL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~----------~~~ 73 (190)
+++++|+++.|+++.+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++. ...
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecccccccchhhHHHH
Confidence 688999999998889999999999999999999999999999999999977 788999999998652 011
Q ss_pred ccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 74 NKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 74 ~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
+..++|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2233433332 1222211 011233444455532 367799999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+++.+++-
T Consensus 161 ~ll--ilDEPt~~LD~~~~~~l~~~l~~~ 187 (242)
T PRK11124 161 QVL--LFDEPTAALDPEITAQIVSIIREL 187 (242)
T ss_pred CEE--EEcCCCCcCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999988864
No 72
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=3.5e-30 Score=213.43 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=119.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~ 80 (190)
+++++|++++|+++.+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-PPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccChHHHHhceEEe
Confidence 478999999999889999999999999999999999999999999999977 7889999999977632 122234444
Q ss_pred hhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 81 AED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 81 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
+++ ..+++... ..+..++..+++.. .+..+|+||+|| .+|++++.+|+++ +||
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--iLD 158 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL--ILD 158 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EEc
Confidence 432 22222211 12333444555532 367799999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcC
Q 029613 136 MPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||++||+..++.+++.+++-
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~ 179 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNI 179 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 73
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=3.7e-30 Score=205.91 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=115.1
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~ 79 (190)
++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... .+..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46889999998888999999999999999999999999999999999987 78899999999765321 1112333
Q ss_pred Chhh--------HHHHHHH----------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhC
Q 029613 80 SAED--------RTENIRR----------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAML 124 (190)
Q Consensus 80 ~~~~--------~~~~~~~----------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall 124 (190)
.+++ ..+++.. -..+..++...++.. .+..+|+||+|| .+||+++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 3322 1122111 012233444455532 367799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||...++.+++.+++-
T Consensus 160 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 189 (236)
T cd03219 160 TDPKLL--LLDEPAAGLNPEETEELAELIREL 189 (236)
T ss_pred cCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999864
No 74
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.6e-30 Score=210.72 Aligned_cols=153 Identities=19% Similarity=0.235 Sum_probs=120.0
Q ss_pred CCcccccCcceeccCc------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---
Q 029613 1 MATVGNSTNIFWQESP------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--- 71 (190)
|++|++++|++++|++ +.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL-IPSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred CCceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccc
Confidence 8889999999999963 46999999999999999999999999999999999987 7889999999977642
Q ss_pred --ccccccCCChhhH---------HHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613 72 --GLNKNLGFSAEDR---------TENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM 123 (190)
Q Consensus 72 --~~~~~i~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral 123 (190)
..+..++|.+++. .+++.. -..+..++...++.. .+..||+||+|| .+||++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1122344444321 111110 011233444455533 377899999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..++.+.+.+++-
T Consensus 160 ~~~p~ll--llDEPt~gLD~~~~~~l~~~l~~l 190 (280)
T PRK13633 160 AMRPECI--IFDEPTAMLDPSGRREVVNTIKEL 190 (280)
T ss_pred HcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999998864
No 75
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.96 E-value=4.6e-30 Score=205.65 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=115.9
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~ 80 (190)
|++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... ....++|.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcccCChhhhhhEEEe
Confidence 478999999998888999999999999999999999999999999999977 78899999999765321 11122332
Q ss_pred hhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 81 AED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 81 ~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++ +||
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llD 157 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALL--LLD 157 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEc
Confidence 222 1222211 012233444455532 367799999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcC
Q 029613 136 MPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||++||+..++.+++.+++.
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~ 178 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRAL 178 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 76
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2e-30 Score=211.86 Aligned_cols=151 Identities=16% Similarity=0.174 Sum_probs=117.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------cccccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~i 77 (190)
|++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCccEEEECCEEcccccCCHHHHHhhe
Confidence 578999999998888999999999999999999999999999999999987 7889999999987631 112234
Q ss_pred CCChhhH---------HHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 78 GFSAEDR---------TENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 78 ~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
+|.+++. .+++... ..+...+...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll- 158 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL- 158 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE-
Confidence 4443321 1111110 11223344444422 367899999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||+..++.+++.+++..
T Consensus 159 -lLDEPt~~LD~~~~~~l~~~l~~~~ 183 (271)
T PRK13638 159 -LLDEPTAGLDPAGRTQMIAIIRRIV 183 (271)
T ss_pred -EEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988643
No 77
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.9e-30 Score=210.46 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=119.0
Q ss_pred CCcccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cc
Q 029613 1 MATVGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GL 73 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~ 73 (190)
|.+|++++|++++|+. ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|+++|.++.. ..
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 1 MSNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-EAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred CCceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHH
Confidence 6678999999999963 45999999999999999999999999999999999987 7889999999987632 12
Q ss_pred ccccCCChhhH---------HHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 74 NKNLGFSAEDR---------TENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 74 ~~~i~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
+..++|.+++. .+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p 159 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 22344433321 1222110 11233444555532 367899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+.+.+++-
T Consensus 160 ~lL--lLDEPt~~LD~~~~~~l~~~l~~l 186 (279)
T PRK13650 160 KII--ILDEATSMLDPEGRLELIKTIKGI 186 (279)
T ss_pred CEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999888764
No 78
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-30 Score=219.92 Aligned_cols=150 Identities=16% Similarity=0.161 Sum_probs=118.0
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCC
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFS 80 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~ 80 (190)
++|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|+. ++.+|+|.++|+++.. ..+..++|.
T Consensus 18 ~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 18 PLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred ceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4789999999999888999999999999999999999999999999999977 7889999999987632 112233443
Q ss_pred hhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 81 AED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 81 ~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
.++ ..+++.. -..+..++...++.. .+..||+||+|| ++||+++.+|+++ +||
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lL--LLD 174 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL--LLD 174 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEe
Confidence 332 2233221 012334455555532 477899999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHc
Q 029613 136 MPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~ 155 (190)
||+++||...++.+.+.+++
T Consensus 175 EP~s~LD~~~r~~l~~~l~~ 194 (377)
T PRK11607 175 EPMGALDKKLRDRMQLEVVD 194 (377)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999999888866654
No 79
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=6.3e-30 Score=200.62 Aligned_cols=147 Identities=22% Similarity=0.177 Sum_probs=113.9
Q ss_pred cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------ccccccC
Q 029613 7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNKNLG 78 (190)
Q Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~~i~ 78 (190)
++|+++.|++.++++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. .....++
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 478999998888999999999999999999999999999999999977 7889999999987421 0112233
Q ss_pred CChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 79 FSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
|.+++ ..+++.. ...+..++...++. ..+..+|+||+|| .+||+++.+|+++ +
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ll--l 157 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLI--L 157 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE--E
Confidence 33322 1122211 11233445555553 2367799999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcC
Q 029613 134 MNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||||++||+..++.+++.+++-
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~ 180 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLEL 180 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 80
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.96 E-value=7.7e-30 Score=203.07 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=115.4
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh----hCCCcEEEEcCccccc------ccc
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY----SRGKLSYILDGDNLRH------GLN 74 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~----~~~~g~i~~~g~~~~~------~~~ 74 (190)
|+++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++. ++.+|+|.++|.++.. ..+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 468999999988889999999999999999999999999999999999762 5678999999977532 112
Q ss_pred cccCCChhh-------HHHHHHH-------------HHHHHHHHHHcCcce----e--ecccCccHHHH-HHHHHhCCCC
Q 029613 75 KNLGFSAED-------RTENIRR-------------VGEVAKLFADAGLIC----I--ASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 75 ~~i~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~~~----~--~~~lS~g~kqr-~iarall~~~ 127 (190)
..++|.+++ ..+++.. -..+..++...++.. . +..+|+||+|| .+||+++.+|
T Consensus 81 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (227)
T cd03260 81 RRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP 160 (227)
T ss_pred hhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC
Confidence 233333332 1222211 012233444455532 2 47899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+++.+++-
T Consensus 161 ~ll--llDEPt~~LD~~~~~~l~~~l~~~ 187 (227)
T cd03260 161 EVL--LLDEPTSALDPISTAKIEELIAEL 187 (227)
T ss_pred CEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999999864
No 81
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.8e-30 Score=206.55 Aligned_cols=154 Identities=20% Similarity=0.141 Sum_probs=118.1
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH----- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~----- 71 (190)
|.++++++|++++|++.++++++||++.+|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++..
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 1 MKFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred CcceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 66789999999999888899999999999999999999999999999999998732 248999999987631
Q ss_pred -ccccccCCChhh--------HHHHHHHH--------------HHHHHHHHHcCcc--------eeecccCccHHHH-HH
Q 029613 72 -GLNKNLGFSAED--------RTENIRRV--------------GEVAKLFADAGLI--------CIASLISPYRKDR-DA 119 (190)
Q Consensus 72 -~~~~~i~~~~~~--------~~~~~~~~--------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~i 119 (190)
..+..++|.+++ ..+++... ..+..++...++. ..+..+|+||+|| .+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 112233443332 12222110 1122334444431 2367799999999 69
Q ss_pred HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||+++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 161 aral~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~ 195 (253)
T PRK14267 161 ARALAMKPKIL--LMDEPTANIDPVGTAKIEELLFEL 195 (253)
T ss_pred HHHHhcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999874
No 82
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=3.9e-30 Score=206.48 Aligned_cols=150 Identities=24% Similarity=0.248 Sum_probs=116.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------cccccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~i 77 (190)
|++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++.. ..+..+
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCChhHHHHhhce
Confidence 478999999998888999999999999999999999999999999999977 7889999999977542 112223
Q ss_pred CCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 78 GFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
+|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll- 158 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM- 158 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEE-
Confidence 333322 1122211 012233445555532 367799999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||...++.+++.+++.
T Consensus 159 -llDEP~~~LD~~~~~~l~~~l~~~ 182 (240)
T PRK09493 159 -LFDEPTSALDPELRHEVLKVMQDL 182 (240)
T ss_pred -EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 83
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.1e-30 Score=203.38 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=118.5
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc-----cccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL-----NKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~-----~~~i 77 (190)
+++++++++++||+..+++++||++++|++++|+|||||||||++++|+|.+ +|++|.|.++|+++.... +..+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCCCCHHHHHhccc
Confidence 5789999999999999999999999999999999999999999999999988 899999999999875310 1111
Q ss_pred CCChhh--------HHHH------------------------HHHHHHHHHHHHHcCccee----ecccCccHHHH-HHH
Q 029613 78 GFSAED--------RTEN------------------------IRRVGEVAKLFADAGLICI----ASLISPYRKDR-DAC 120 (190)
Q Consensus 78 ~~~~~~--------~~~~------------------------~~~~~~~~~~~~~~~~~~~----~~~lS~g~kqr-~ia 120 (190)
..+.|. ..++ .....+...+++..++... ...||.|++++ +||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 111110 0011 1111233445566666543 56699999888 799
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
||++.+|+++ +||||.+++.++....+.+.+++-.
T Consensus 162 rALa~~P~lL--LLDEPaAGln~~e~~~l~~~i~~i~ 196 (250)
T COG0411 162 RALATQPKLL--LLDEPAAGLNPEETEELAELIRELR 196 (250)
T ss_pred HHHhcCCCEE--EecCccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999998888744
No 84
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.4e-30 Score=210.60 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=119.2
Q ss_pred CC-cccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------c
Q 029613 1 MA-TVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------G 72 (190)
Q Consensus 1 m~-~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~ 72 (190)
|. +|++++|++++|+ ++.+++++||++++||+++|+|+||||||||+++|+|++ ++.+|+|.++|.++.. .
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~-~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 1 MEDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-KPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred CCCceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECCEECCCCcchHHH
Confidence 54 4899999999996 578999999999999999999999999999999999987 7889999999987631 1
Q ss_pred cccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613 73 LNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 73 ~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~ 126 (190)
.+..++|.+++ ..+++.. ...+...+...++.. .+..+|+||+|| .+||+++.+
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~ 159 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 159 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 22334444432 1122211 012233445555533 377899999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||+..+..+++.+++-
T Consensus 160 p~lL--ilDEPt~gLD~~~~~~l~~~l~~l 187 (283)
T PRK13636 160 PKVL--VLDEPTAGLDPMGVSEIMKLLVEM 187 (283)
T ss_pred CCEE--EEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999 999999999999999998888754
No 85
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.7e-30 Score=197.44 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=106.2
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhH
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDR 84 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~ 84 (190)
++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ....+.
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~-------~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSF-------ASPRDA 72 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCc-------CCHHHH
Confidence 46889999998888999999999999999999999999999999999977 7889999999976642 111100
Q ss_pred HHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 85 TENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
. . ....++..+|+||+|| .+||+++.+|+++ +|||||++||...++.+++.+++..
T Consensus 73 ---~-----------~-~~i~~~~qLS~G~~qrl~laral~~~p~il--llDEP~~~LD~~~~~~l~~~l~~~~ 129 (163)
T cd03216 73 ---R-----------R-AGIAMVYQLSVGERQMVEIARALARNARLL--ILDEPTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred ---H-----------h-cCeEEEEecCHHHHHHHHHHHHHhcCCCEE--EEECCCcCCCHHHHHHHHHHHHHHH
Confidence 0 0 0111223399999999 6999999999999 9999999999999999999998653
No 86
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.96 E-value=5.3e-30 Score=200.80 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=115.3
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCCh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFSA 81 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~~ 81 (190)
++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|.+
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccccHHhhhheEEec
Confidence 46899999999888999999999999999999999999999999999977 7889999999877532 1122233322
Q ss_pred hh--------HHHHHHHH------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613 82 ED--------RTENIRRV------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE 142 (190)
Q Consensus 82 ~~--------~~~~~~~~------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld 142 (190)
++ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llDEPt~~LD 157 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLW--ILDEPTTALD 157 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCCCCC
Confidence 21 12222111 12333444445432 367799999999 6999999999999 9999999999
Q ss_pred hcChHHHHHHHHcC
Q 029613 143 ARDPKGLYKLARAG 156 (190)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (190)
+..++.+++.+++-
T Consensus 158 ~~~~~~l~~~l~~~ 171 (201)
T cd03231 158 KAGVARFAEAMAGH 171 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 87
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=8.7e-30 Score=204.59 Aligned_cols=150 Identities=16% Similarity=0.206 Sum_probs=117.0
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~ 78 (190)
|++++|++++|++.++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++... .+..++
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT-RPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 688999999998888999999999999999999999999999999999987 78899999999765320 111233
Q ss_pred CChhh--------HHHHHHH--------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCC
Q 029613 79 FSAED--------RTENIRR--------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLP 125 (190)
Q Consensus 79 ~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~ 125 (190)
|.+++ ..+++.. -..+..++...++.. .+..+|+||+|| .+||+++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 33322 1222211 012233444445532 367799999999 69999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|+++ +|||||++||+..++.+++.+++.
T Consensus 161 ~p~~l--llDEPt~~LD~~~~~~l~~~l~~~ 189 (242)
T TIGR03411 161 DPKLL--LLDEPVAGMTDEETEKTAELLKSL 189 (242)
T ss_pred CCCEE--EecCCccCCCHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999864
No 88
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-29 Score=205.12 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=116.6
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~ 72 (190)
|+++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++. + +.+|.|.++|.++.. .
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 58999999999988889999999999999999999999999999999999763 2 478999999976632 1
Q ss_pred cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iaral 123 (190)
.+..++|.+++ ..+++... ..+...+...++. ..+..+|+||+|| .+||++
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 12233443332 22222110 1122233444441 2367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||...++.+.+.+++.
T Consensus 165 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 195 (253)
T PRK14242 165 AVEPEVL--LMDEPASALDPIATQKIEELIHEL 195 (253)
T ss_pred hcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999875
No 89
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.1e-30 Score=209.91 Aligned_cols=152 Identities=19% Similarity=0.216 Sum_probs=118.8
Q ss_pred cccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 3 TVGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
+|++++|++++|+. +.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~-~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHhhh
Confidence 57999999999974 56999999999999999999999999999999999987 7889999999987642 11223
Q ss_pred cCCChhh---------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 77 LGFSAED---------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 77 i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
++|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3443332 1222211 012333444445533 367899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||+..+..+++.+++..
T Consensus 163 --lLDEPt~gLD~~~~~~l~~~l~~l~ 187 (279)
T PRK13635 163 --ILDEATSMLDPRGRREVLETVRQLK 187 (279)
T ss_pred --EEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998643
No 90
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.96 E-value=8e-30 Score=207.27 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=117.9
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCccccc------
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRH------ 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~------ 71 (190)
|.+|++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++. +|+|.++|.++..
T Consensus 1 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~~~~G~i~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 1 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI-TGDKSAGSHIELLGRTVQREGRLAR 79 (262)
T ss_pred CCcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCCceEEEECCEecccccccch
Confidence 778999999999999889999999999999999999999999999999999987 443 5899999976531
Q ss_pred ---ccccccCCChhh--------HHHHHHH--------------------HHHHHHHHHHcCcc----eeecccCccHHH
Q 029613 72 ---GLNKNLGFSAED--------RTENIRR--------------------VGEVAKLFADAGLI----CIASLISPYRKD 116 (190)
Q Consensus 72 ---~~~~~i~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~----~~~~~lS~g~kq 116 (190)
.....++|.+++ ..+++.. -..+..++...++. ..+..||+||+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQ 159 (262)
T ss_pred hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHH
Confidence 011123333322 1122210 01233344445553 236779999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
| .+||+++.+|+++ +|||||++||....+.+.+.+++-
T Consensus 160 rv~laral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 198 (262)
T PRK09984 160 RVAIARALMQQAKVI--LADEPIASLDPESARIVMDTLRDI 198 (262)
T ss_pred HHHHHHHHhcCCCEE--EecCccccCCHHHHHHHHHHHHHH
Confidence 9 6999999999999 999999999999999999998864
No 91
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.4e-30 Score=218.24 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=119.6
Q ss_pred CCcccccCcceeccCccc------------------------cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613 1 MATVGNSTNIFWQESPIG------------------------RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS 56 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~------------------------~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~ 56 (190)
|+.+|+++|++|.|+..+ +++++||++++|++++|+||||||||||+|+|+|++ +
T Consensus 1 ~~~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~ 79 (400)
T PRK10070 1 MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-E 79 (400)
T ss_pred CCcEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-C
Confidence 677889999999887754 799999999999999999999999999999999987 7
Q ss_pred CCCcEEEEcCcccccc----c----ccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce---
Q 029613 57 RGKLSYILDGDNLRHG----L----NKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC--- 105 (190)
Q Consensus 57 ~~~g~i~~~g~~~~~~----~----~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~--- 105 (190)
+.+|+|.++|.++... . +..++|.+++ ..+++.. ...+..++...++..
T Consensus 80 p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 80 PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 8899999999876421 0 1234443332 2222221 112334455555533
Q ss_pred -eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 106 -IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 106 -~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+..||+||+|| .+||+++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 160 ~~~~~LSgGq~QRv~LArAL~~~P~iL--LLDEPts~LD~~~r~~l~~~L~~l 210 (400)
T PRK10070 160 SYPDELSGGMRQRVGLARALAINPDIL--LMDEAFSALDPLIRTEMQDELVKL 210 (400)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEE--EEECCCccCCHHHHHHHHHHHHHH
Confidence 377899999999 6999999999999 999999999999999999888764
No 92
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=5.3e-30 Score=204.52 Aligned_cols=149 Identities=18% Similarity=0.271 Sum_probs=115.0
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~ 79 (190)
++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++... .+..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-KPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 46889999999888999999999999999999999999999999999987 78899999999765321 1122333
Q ss_pred Chhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 80 SAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 80 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
.+++ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--ll 157 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFL--LL 157 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--Ee
Confidence 3322 12222110 11223444445532 367799999999 6999999999999 99
Q ss_pred eCCchhhhhcChHHHHHHHHcC
Q 029613 135 NMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 135 DEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||||++||...++.+++.+++-
T Consensus 158 DEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 158 DEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 93
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.5e-30 Score=201.06 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=114.8
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCCh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSA 81 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~ 81 (190)
++++|++++|++..+++++||++++| +++|+||||||||||+++|+|++ ++.+|+|.++|.++... ....++|.+
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-PPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCCccccchHHHHhheEEec
Confidence 46889999998888999999999999 99999999999999999999977 78899999999765321 112233333
Q ss_pred hh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 82 ED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--llDE 156 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL--IVDE 156 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE--EEcC
Confidence 22 1222211 012233444455432 367799999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHcCC
Q 029613 137 PLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~~~ 157 (190)
||++||+..++.+++.+++-.
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHh
Confidence 999999999999999998643
No 94
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=7.1e-30 Score=208.44 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=117.1
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNK 75 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~ 75 (190)
+||+++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ....
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI-APDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccChhhHHHHhh
Confidence 4789999999999888999999999999999999999999999999999987 7889999999976531 0112
Q ss_pred ccCCChhh--------HHHHHHHH-------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613 76 NLGFSAED--------RTENIRRV-------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i 129 (190)
.++|.+++ ..+++... ..+..++...++.. .+..||+||+|| .+||+++.+|++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23333222 12222110 11223344455532 367899999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+..++.+++.+++.
T Consensus 165 l--lLDEPt~~LD~~~~~~l~~~l~~~ 189 (269)
T PRK11831 165 I--MFDEPFVGQDPITMGVLVKLISEL 189 (269)
T ss_pred E--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999888864
No 95
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.96 E-value=8e-30 Score=202.17 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=113.6
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~ 79 (190)
|+++|++++|++.++++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... .+..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-PPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 46889999998888999999999999999999999999999999999987 78899999999765321 1223444
Q ss_pred Chhh--------HHHHHHHH----------HHHHHHHHHc-Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 80 SAED--------RTENIRRV----------GEVAKLFADA-GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 80 ~~~~--------~~~~~~~~----------~~~~~~~~~~-~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
.+++ ..+++... ..+..++... ++ ...+..+|+||+|| .+||+++.+|+++ +||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llD 157 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL--LLD 157 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEE--EEC
Confidence 4332 11222110 0111222222 11 23367799999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcC
Q 029613 136 MPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||++||+..++.+++.+++.
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 96
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.96 E-value=1.3e-29 Score=201.91 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=117.2
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
+|++++|+++.|++.++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .....++
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4799999999999888999999999999999999999999999999999977 7889999999976531 1112233
Q ss_pred CChhh-------HHHHHHH----------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 79 FSAED-------RTENIRR----------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 79 ~~~~~-------~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
|.+++ ..+++.. ...+..++...++. ..+..+|+|++|| .+||+++.+|+++ +||
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llD 162 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL--LLD 162 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE--EEe
Confidence 32222 2222211 01223445555552 2367799999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcC
Q 029613 136 MPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||++||+..++.+.+.+++-
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~ 183 (225)
T PRK10247 163 EITSALDESNKHNVNEIIHRY 183 (225)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999888763
No 97
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-29 Score=204.67 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=116.5
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc----cccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH----GLNK 75 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~----~~~~ 75 (190)
+++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++.. ..+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 68999999999888899999999999999999999999999999999998732 368999999976532 1122
Q ss_pred ccCCChhh--------HHHHHHH--------------HHHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhC
Q 029613 76 NLGFSAED--------RTENIRR--------------VGEVAKLFADAGLI--------CIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall 124 (190)
.++|.+++ ..+++.. ...+...+...++. ..+..+|+||+|| .+||+++
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 23333322 1222211 01223344444442 2367899999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||+..++.+++.+++-
T Consensus 163 ~~p~ll--lLDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14247 163 FQPEVL--LADEPTANLDPENTAKIESLFLEL 192 (250)
T ss_pred cCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999874
No 98
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.6e-30 Score=207.00 Aligned_cols=150 Identities=16% Similarity=0.155 Sum_probs=115.8
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 689999999999888999999999999999999999999999999999977 7889999999976532 11112333
Q ss_pred Chhh--------HHHHHHH----------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAED--------RTENIRR----------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+++ ..+++.. -..+..++...++. ..+..+|+||+|| .+||+++.+|+++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 160 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3222 1122110 01122334444443 2367899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+.+.+++.
T Consensus 161 --llDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 161 --LLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred --EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 99
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.1e-30 Score=210.69 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=117.7
Q ss_pred ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------c
Q 029613 4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------G 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~ 72 (190)
+++++|++++|+. +.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEEEECCEECCCcCccHHH
Confidence 4889999999974 46999999999999999999999999999999999987 7889999999987642 1
Q ss_pred cccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc------eeecccCccHHHH-HHHHHhC
Q 029613 73 LNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI------CIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 73 ~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~------~~~~~lS~g~kqr-~iarall 124 (190)
.+..++|.+++ ..+++.. ...+..++...++. ..+..||+||+|| .+||+++
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 22334544443 1122211 01233445555553 2367899999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||+..+..+++.+++.
T Consensus 161 ~~P~ll--llDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 161 MEPKIL--ILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred cCCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999998764
No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.1e-30 Score=205.43 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=115.6
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i 77 (190)
+|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-RATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3789999999998888999999999999999999999999999999999977 7889999999976532 011223
Q ss_pred CCChhh--------HHHHHHH---------H-HHHHHHHHHc-Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 78 GFSAED--------RTENIRR---------V-GEVAKLFADA-GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~---------~-~~~~~~~~~~-~~----~~~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
+|.+++ ..+++.. . ..+..++... ++ ...+..+|+||+|| .+||+++.+|+++ +
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il--l 160 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL--L 160 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE--E
Confidence 333322 1111110 0 0111112211 11 22467799999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 134 MNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
|||||++||+..++.+++.+++...+|
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~ 187 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQG 187 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999988643334
No 101
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.5e-30 Score=204.53 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=117.0
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
+++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-DPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 689999999998888999999999999999999999999999999999977 7889999999976532 11222333
Q ss_pred Chhh-------HHHHHHH--------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 80 SAED-------RTENIRR--------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 80 ~~~~-------~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
.+++ ..+++.. ..++..++...++. ..+..+|+||+|| .+||+++.+|+++ +|||||
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--llDEPt 159 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL--LLDEPT 159 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEeCCc
Confidence 3332 1222210 01223344455552 2367799999999 6999999999999 999999
Q ss_pred hhhhhcChHHHHHHHHcC
Q 029613 139 ELCEARDPKGLYKLARAG 156 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~~ 156 (190)
++||...++.+++.+++.
T Consensus 160 ~~LD~~~~~~l~~~l~~~ 177 (241)
T PRK14250 160 SALDPTSTEIIEELIVKL 177 (241)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999888764
No 102
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.9e-30 Score=204.78 Aligned_cols=152 Identities=17% Similarity=0.263 Sum_probs=116.3
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNK 75 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~ 75 (190)
|. |++++|++++|+++.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+.
T Consensus 1 ~~-~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 1 MA-TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-PRDAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred Cc-eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHHh
Confidence 53 789999999998888999999999999999999999999999999999977 7889999999976532 0112
Q ss_pred ccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 76 NLGFSAED--------RTENIRR-------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
.++|.+++ ..+++.. ...+..++...++. ..+..+|+||+|| .+||+++.+|++
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23333322 1122111 01122334444443 2367799999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+..++.+++.+++.
T Consensus 159 l--llDEPt~~LD~~~~~~l~~~l~~~ 183 (241)
T PRK10895 159 I--LLDEPFAGVDPISVIDIKRIIEHL 183 (241)
T ss_pred E--EEcCCcccCCHHHHHHHHHHHHHH
Confidence 9 999999999999999888888754
No 103
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-29 Score=205.13 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=116.4
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i 77 (190)
+|++++|+++.|++.++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++... .+..+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-KPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCcceEEECCEECCCCCHHHHHhcCe
Confidence 3789999999998889999999999999999999999999999999999977 78899999999765321 11112
Q ss_pred CCChhh--------HHHHHHH---------------------------HHHHHHHHHHcCcce----eecccCccHHHH-
Q 029613 78 GFSAED--------RTENIRR---------------------------VGEVAKLFADAGLIC----IASLISPYRKDR- 117 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~---------------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr- 117 (190)
+|.+++ ..+++.. ...+..++...++.. .+..+|+||+||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 222221 1222111 011223344445432 367799999999
Q ss_pred HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+||+++.+|+++ +|||||++||+..++.+.+.+.+.
T Consensus 163 ~la~al~~~p~ll--llDEPt~~LD~~~~~~l~~~L~~~ 199 (255)
T PRK11300 163 EIARCMVTQPEIL--MLDEPAAGLNPKETKELDELIAEL 199 (255)
T ss_pred HHHHHHhcCCCEE--EEcCCccCCCHHHHHHHHHHHHHH
Confidence 6999999999999 999999999999999999988764
No 104
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.96 E-value=1.3e-29 Score=204.31 Aligned_cols=150 Identities=21% Similarity=0.174 Sum_probs=115.9
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-----CcEEEEcCccccc------c
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-----KLSYILDGDNLRH------G 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-----~g~i~~~g~~~~~------~ 72 (190)
|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++. +|.|.++|.++.. .
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN-DLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCcCCCCceEEEECCEEccccccchHH
Confidence 478999999999888999999999999999999999999999999999987 555 8999999987632 1
Q ss_pred cccccCCChhh-------HHHHHHH-------------HHHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAED-------RTENIRR-------------VGEVAKLFADAGLI--------CIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iaral 123 (190)
.+..++|.+++ ..+++.. ...+..++...++. ..+..+|+||+|| .+||++
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 12233433332 1222211 01122344444543 2367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..+..+++.+++-
T Consensus 160 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 190 (247)
T TIGR00972 160 AVEPEVL--LLDEPTSALDPIATGKIEELIQEL 190 (247)
T ss_pred hcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999988864
No 105
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=1.7e-29 Score=204.44 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=114.3
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS 80 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~ 80 (190)
|.+|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.+++.....-+.+...+.
T Consensus 1 ~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~~~~~i~~v~q~~~~~ 79 (251)
T PRK09544 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APDEGVIKRNGKLRIGYVPQKLYLD 79 (251)
T ss_pred CCcEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCccCEEEeccccccc
Confidence 667899999999999888999999999999999999999999999999999987 7889999988742110000110000
Q ss_pred h---hhHHHHHHH-----HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613 81 A---EDRTENIRR-----VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK 147 (190)
Q Consensus 81 ~---~~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~ 147 (190)
. ....+++.. ...+...+...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++||+..++
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll--lLDEPt~~LD~~~~~ 157 (251)
T PRK09544 80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLL--VLDEPTQGVDVNGQV 157 (251)
T ss_pred cccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCcCCCHHHHH
Confidence 0 011111100 012333444445432 367799999999 6999999999999 999999999999999
Q ss_pred HHHHHHHcC
Q 029613 148 GLYKLARAG 156 (190)
Q Consensus 148 ~~~~~~~~~ 156 (190)
.+++.+++-
T Consensus 158 ~l~~~L~~~ 166 (251)
T PRK09544 158 ALYDLIDQL 166 (251)
T ss_pred HHHHHHHHH
Confidence 999888753
No 106
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-29 Score=203.25 Aligned_cols=149 Identities=21% Similarity=0.264 Sum_probs=115.5
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. .....++|
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCeEcCcCChHHhhcceEE
Confidence 467899999987 78999999999999999999999999999999999977 7889999999976532 11222333
Q ss_pred Chhh--------HHHHHHH------------HHHHHHHHHHcCcce------eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 80 SAED--------RTENIRR------------VGEVAKLFADAGLIC------IASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 80 ~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~------~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
.+++ ..+++.. ...+..++..+++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll-- 157 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL-- 157 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence 3332 1222211 112334455555542 267799999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+.+.+++.
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~~ 181 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKRL 181 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999888864
No 107
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.96 E-value=1.1e-29 Score=198.48 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=114.8
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCCh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSA 81 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~ 81 (190)
++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|.+ ++.+|.|.++|.++... ....++|.+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccchHHhhhheEEec
Confidence 46789999999889999999999999999999999999999999999977 78899999999765321 111222322
Q ss_pred hh--------HHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613 82 ED--------RTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL 140 (190)
Q Consensus 82 ~~--------~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ 140 (190)
++ ..+++... ..+...+...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--llDEPt~~ 157 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLW--ILDEPTTA 157 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEE--EEeCCCcC
Confidence 21 22222211 11333444445432 367799999999 6999999999999 99999999
Q ss_pred hhhcChHHHHHHHHcC
Q 029613 141 CEARDPKGLYKLARAG 156 (190)
Q Consensus 141 ld~~~~~~~~~~~~~~ 156 (190)
||...++.+.+.+++-
T Consensus 158 LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 158 LDKAGVALLAGLLRAH 173 (198)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998864
No 108
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.7e-30 Score=205.65 Aligned_cols=151 Identities=21% Similarity=0.220 Sum_probs=120.6
Q ss_pred cccccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccc
Q 029613 3 TVGNSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKN 76 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~ 76 (190)
+|+++++++++|++. .+++++||++.+|+.++|+|+||||||||+++++|++ .|.+|.|.++|.++.. .++..
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl-~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL-KPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC-cCCCCEEEECCeeccchhhHHHhhcc
Confidence 478899999999765 8999999999999999999999999999999999988 7888999999976531 22333
Q ss_pred cCCChhhH------------------------HHHHHHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCC
Q 029613 77 LGFSAEDR------------------------TENIRRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 77 i~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~ 127 (190)
+++..|.. .+.. ..+...+...++. ..+..|||||+|| +||.+++.+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~---~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P 157 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIE---ERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP 157 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHH---HHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCC
Confidence 44433321 1111 2233444555553 3488899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcCCCC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAGKIK 159 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~ 159 (190)
+++ +|||||++||++.++.+.+.+++.+..
T Consensus 158 ~il--iLDEPta~LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 158 EIL--LLDEPTAGLDPKGRRELLELLKKLKEE 187 (235)
T ss_pred CEE--EEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999 999999999999999999999886555
No 109
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-29 Score=204.62 Aligned_cols=154 Identities=20% Similarity=0.207 Sum_probs=117.1
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH----- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~----- 71 (190)
|.++++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++..
T Consensus 1 ~~~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 1 MAKRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred CCccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 66789999999999888899999999999999999999999999999999998732 268999999976521
Q ss_pred -ccccccCCChhh--------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHH
Q 029613 72 -GLNKNLGFSAED--------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DAC 120 (190)
Q Consensus 72 -~~~~~i~~~~~~--------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~ia 120 (190)
..+..++|.+++ ..+++.. . ..+..++...++ ...+..||+||+|| .+|
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 112223333322 1222211 0 112223334443 12367799999999 699
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++.+|+++ +|||||++||+..+..+++.+++-
T Consensus 161 ral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 194 (258)
T PRK14241 161 RAIAVEPDVL--LMDEPCSALDPISTLAIEDLINEL 194 (258)
T ss_pred HHHhcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999988764
No 110
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=7.7e-30 Score=224.45 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=119.7
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNK 75 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~ 75 (190)
|.+|++++|++++|++.++++++||++.+|++++|+||||||||||+|+|+|++ ++.+|+|.++|.++... .+.
T Consensus 1 ~~~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 1 MQALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY-TRDAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred CCceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhC
Confidence 678999999999999888999999999999999999999999999999999987 78899999999765310 112
Q ss_pred ccCCChhh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613 76 NLGFSAED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~ 126 (190)
.++|.+++ ..+++.. -..+..++...++.. .+..||+||+|| .+||+++.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcC
Confidence 23333332 1111110 012334455555532 367899999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||+..+..+++.+++.
T Consensus 160 p~ll--lLDEPt~~LD~~~~~~l~~~l~~l 187 (501)
T PRK10762 160 SKVI--IMDEPTDALTDTETESLFRVIREL 187 (501)
T ss_pred CCEE--EEeCCcCCCCHHHHHHHHHHHHHH
Confidence 9999 999999999999999999888764
No 111
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=9.4e-30 Score=206.42 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=116.9
Q ss_pred CcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-----cccc----
Q 029613 2 ATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-----LRHG---- 72 (190)
Q Consensus 2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-----~~~~---- 72 (190)
.+|++++|++++|+++.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.+ +...
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCccccccccccCCHHH
Confidence 45899999999998888999999999999999999999999999999999977 7889999999986 4210
Q ss_pred ----cccccCCChhhH----------HHHHH------------H-HHHHHHHHHHcCcc-----eeecccCccHHHH-HH
Q 029613 73 ----LNKNLGFSAEDR----------TENIR------------R-VGEVAKLFADAGLI-----CIASLISPYRKDR-DA 119 (190)
Q Consensus 73 ----~~~~i~~~~~~~----------~~~~~------------~-~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~i 119 (190)
.+..++|.+++. .+++. . ...+..++...++. ..+..+|+||+|| .+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 111233333321 01110 0 01122334444442 2367899999999 69
Q ss_pred HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||+++.+|+++ +|||||++||....+.+++.+++.
T Consensus 163 aral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 197 (258)
T PRK11701 163 ARNLVTHPRLV--FMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred HHHHhcCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999888753
No 112
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-29 Score=203.55 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=117.5
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH----- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~----- 71 (190)
|.++++++|++++|+.+++++++||++++|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++..
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 1 MENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred CCceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 66789999999999988999999999999999999999999999999999998731 368999999976531
Q ss_pred -ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHH
Q 029613 72 -GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACR 121 (190)
Q Consensus 72 -~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iar 121 (190)
..+..++|.+++ ..+++... ..+...+...++ ...+..+|+||+|| .+||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 112223333222 12222110 112233344444 12366799999999 6999
Q ss_pred HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 161 al~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14251 161 ALAVRPKVV--LLDEPTSALDPISSSEIEETLMEL 193 (251)
T ss_pred HHhcCCCEE--EecCCCccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999864
No 113
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=9.2e-30 Score=206.37 Aligned_cols=157 Identities=19% Similarity=0.195 Sum_probs=120.5
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----------
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----------- 71 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----------- 71 (190)
++++++|+++.|+++.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccccccccccccc
Confidence 4789999999999888999999999999999999999999999999999977 7789999999976531
Q ss_pred ------ccccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce-----eecccCccHHHH-H
Q 029613 72 ------GLNKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC-----IASLISPYRKDR-D 118 (190)
Q Consensus 72 ------~~~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~ 118 (190)
.....++|.+++ ..+++.. -..+..++...++.. .+..+|+||+|| .
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 112233432222 2222211 012334455555532 356799999999 6
Q ss_pred HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+||+++.+|+++ +|||||++||...++.+.+.+++....|.+
T Consensus 163 laral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~l~~~g~t 204 (257)
T PRK10619 163 IARALAMEPEVL--LFDEPTSALDPELVGEVLRIMQQLAEEGKT 204 (257)
T ss_pred HHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 999999999999 999999999999999999988865433433
No 114
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1e-29 Score=208.07 Aligned_cols=155 Identities=20% Similarity=0.222 Sum_probs=117.7
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccccc
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i 77 (190)
|++++|++++|+ ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-RPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEECCccccHHHHHhhe
Confidence 478999999995 567999999999999999999999999999999999977 7889999999977632 112223
Q ss_pred CCChhh---------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 78 GFSAED---------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 78 ~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
+|.+++ ..+++.. ...+..++...++. ..+..+|+||+|| .+||+++.+|+++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll- 158 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL- 158 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE-
Confidence 333322 1122211 01123334445553 2367899999999 5999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAGKIKGL 161 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~~ 161 (190)
+|||||++||+..+..+++.+++.+..|.
T Consensus 159 -lLDEPt~gLD~~~~~~l~~~l~~l~~~g~ 187 (274)
T PRK13644 159 -IFDEVTSMLDPDSGIAVLERIKKLHEKGK 187 (274)
T ss_pred -EEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998876433343
No 115
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-29 Score=207.16 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=116.2
Q ss_pred CcccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 2 ATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 2 ~~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
-+|++++|++++|+ ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....
T Consensus 1 ~~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred CceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhh
Confidence 04789999999995 457999999999999999999999999999999999977 7889999999976532 11122
Q ss_pred cCCChhh---------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 77 LGFSAED---------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 77 i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
++|.+++ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3333222 11222110 11233444445432 377899999999 5999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+++.+++-
T Consensus 160 --ilDEPt~gLD~~~~~~l~~~l~~l 183 (277)
T PRK13652 160 --VLDEPTAGLDPQGVKELIDFLNDL 183 (277)
T ss_pred --EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 116
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=8.1e-30 Score=215.82 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=117.6
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC--cEEEEcCcccccc--cccccCCC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK--LSYILDGDNLRHG--LNKNLGFS 80 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~--g~i~~~g~~~~~~--~~~~i~~~ 80 (190)
++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+ |+|.++|.++... ....++|.
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 68899999999888999999999999999999999999999999999977 7888 9999999876321 11223333
Q ss_pred hhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 81 AED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 81 ~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
.++ ..+++.. -..+..++...++.. .+..||+||+|| ++||+++.+|+++ +||
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll--LLD 162 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL--LLD 162 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEc
Confidence 332 2233221 012334455555533 478899999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcC
Q 029613 136 MPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||++||...++.+.+.+++.
T Consensus 163 EP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 163 EPLSALDANIRANMREEIAAL 183 (362)
T ss_pred CccccCCHHHHHHHHHHHHHH
Confidence 999999999999999888764
No 117
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=1.4e-29 Score=209.84 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=111.2
Q ss_pred eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCChhh-----
Q 029613 12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSAED----- 83 (190)
Q Consensus 12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~~~----- 83 (190)
|+|+++.+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... .+..++|.+++
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL-RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 4677788999999999999999999999999999999999987 78899999999776321 12234444433
Q ss_pred ---HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613 84 ---RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA 143 (190)
Q Consensus 84 ---~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~ 143 (190)
..+++... ..+..++..+++.. .+..||+||+|| .+|++++.+|+++ +|||||++||+
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--lLDEPt~gLD~ 157 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVL--FLDEPTTGLDP 157 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCcCCCH
Confidence 22222211 12334455555532 367899999999 6999999999999 99999999999
Q ss_pred cChHHHHHHHHcCC
Q 029613 144 RDPKGLYKLARAGK 157 (190)
Q Consensus 144 ~~~~~~~~~~~~~~ 157 (190)
..++.+++.+++-.
T Consensus 158 ~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 158 RTRRAIWDYIRALK 171 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 118
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-29 Score=208.65 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=116.9
Q ss_pred ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613 4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------- 71 (190)
+++++|++++|++ +.+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-KPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchH
Confidence 5789999999974 46999999999999999999999999999999999977 7899999999987632
Q ss_pred -ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-e----eecccCccHHHH-HHHHHh
Q 029613 72 -GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-C----IASLISPYRKDR-DACRAM 123 (190)
Q Consensus 72 -~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~iaral 123 (190)
..+..++|.+++ ..+++.. ...+..++...++. . .+..||+||+|| .+||++
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 112234444332 1222211 01223445555553 2 267899999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..++.+.+.+++-
T Consensus 161 ~~~p~lL--lLDEPt~gLD~~~~~~l~~~l~~l 191 (287)
T PRK13641 161 AYEPEIL--CLDEPAAGLDPEGRKEMMQLFKDY 191 (287)
T ss_pred HcCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999998864
No 119
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-29 Score=205.50 Aligned_cols=151 Identities=18% Similarity=0.184 Sum_probs=116.3
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....++
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-PPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEehhhCCHHHHhhheE
Confidence 3789999999998888999999999999999999999999999999999977 7889999999976531 1111222
Q ss_pred CChhh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i 129 (190)
|.+++ ..+++.. -..+..++...++.. .+..+|+||+|| .+||+++.+|++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 32221 1222210 012233444445432 367799999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||...++.+++.+++.
T Consensus 169 l--lLDEPt~~LD~~~~~~~~~~l~~l 193 (265)
T PRK10575 169 L--LLDEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred E--EEcCCcccCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999888764
No 120
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.96 E-value=1.9e-29 Score=200.38 Aligned_cols=153 Identities=20% Similarity=0.181 Sum_probs=116.7
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh--
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE-- 82 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~-- 82 (190)
++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.......++|.++
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEeccccccccEEEEcCCC
Confidence 46889999998888999999999999999999999999999999999987 788999999987653211111222222
Q ss_pred ------hHHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613 83 ------DRTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA 143 (190)
Q Consensus 83 ------~~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~ 143 (190)
...+++... ..+..++...++.. .+..+|+|++|| .+||+++.+|+++ +|||||++||.
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll--llDEP~~~LD~ 157 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL--ILDEPTNGLDP 157 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE--EECCCccCCCH
Confidence 122332211 12334455555543 266799999999 6999999999999 99999999999
Q ss_pred cChHHHHHHHHcCCCCC
Q 029613 144 RDPKGLYKLARAGKIKG 160 (190)
Q Consensus 144 ~~~~~~~~~~~~~~~~~ 160 (190)
..++.+++.+++....|
T Consensus 158 ~~~~~l~~~L~~~~~~~ 174 (223)
T TIGR03740 158 IGIQELRELIRSFPEQG 174 (223)
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 99999999998643334
No 121
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-29 Score=211.10 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=117.0
Q ss_pred ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh---CCCcEEEEcCcccccc----
Q 029613 4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS---RGKLSYILDGDNLRHG---- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~---~~~g~i~~~g~~~~~~---- 72 (190)
+|+++|+++.|+. ..+++|+||++++||+++|+|+||||||||+++|+|++.+ +.+|.|.++|.++...
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 6899999999976 4699999999999999999999999999999999998742 3689999999876321
Q ss_pred c----ccccCCChhhH--------------HHHHHH---------HHHHHHHHHHcCcc-------eeecccCccHHHH-
Q 029613 73 L----NKNLGFSAEDR--------------TENIRR---------VGEVAKLFADAGLI-------CIASLISPYRKDR- 117 (190)
Q Consensus 73 ~----~~~i~~~~~~~--------------~~~~~~---------~~~~~~~~~~~~~~-------~~~~~lS~g~kqr- 117 (190)
. ...++|.+++. .+.+.. -..+..++...++. .++..||+||+||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 0 11234443331 111110 11234455666663 2478899999999
Q ss_pred HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.||||++.+|+++ ++||||++||...+..+++.+++.
T Consensus 163 ~iArAL~~~P~ll--ilDEPts~LD~~~~~~il~lL~~l 199 (326)
T PRK11022 163 MIAMAIACRPKLL--IADEPTTALDVTIQAQIIELLLEL 199 (326)
T ss_pred HHHHHHHhCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 5999999999999 999999999999999999888764
No 122
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-29 Score=205.50 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=117.9
Q ss_pred cccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 3 TVGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 3 ~~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
+|++++|++++|+ ...+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. ..+..
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-KPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEecCcCCHHHHhcc
Confidence 4789999999995 467999999999999999999999999999999999987 7889999999987642 12233
Q ss_pred cCCChhhH---------HHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 77 LGFSAEDR---------TENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 77 i~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
++|.+++. .+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 44444321 1222110 01223444455532 367899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+++.+++.
T Consensus 165 --lLDEP~~gLD~~~~~~l~~~l~~~ 188 (271)
T PRK13632 165 --IFDESTSMLDPKGKREIKKIMVDL 188 (271)
T ss_pred --EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999864
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.96 E-value=1.4e-29 Score=201.45 Aligned_cols=150 Identities=23% Similarity=0.219 Sum_probs=114.5
Q ss_pred ccccCcceeccCcc----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------c
Q 029613 4 VGNSTNIFWQESPI----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------G 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~~----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~ 72 (190)
|++++|++++|++. ++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccchhhHHH
Confidence 47889999999765 7999999999999999999999999999999999977 7889999999976532 1
Q ss_pred cccccCCChhhH----------HHHHHH-------------HHHH-HHHHHHcCcc-----eeecccCccHHHH-HHHHH
Q 029613 73 LNKNLGFSAEDR----------TENIRR-------------VGEV-AKLFADAGLI-----CIASLISPYRKDR-DACRA 122 (190)
Q Consensus 73 ~~~~i~~~~~~~----------~~~~~~-------------~~~~-~~~~~~~~~~-----~~~~~lS~g~kqr-~iara 122 (190)
.+..++|.+++. .+++.. .... ..++...++. ..+..+|+||+|| .+||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 112233332221 121110 0111 1344444542 2367799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||+..++.+++.+++-
T Consensus 160 l~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 191 (228)
T cd03257 160 LALNPKLL--IADEPTSALDVSVQAQILDLLKKL 191 (228)
T ss_pred HhcCCCEE--EecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999998764
No 124
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.2e-30 Score=199.38 Aligned_cols=139 Identities=22% Similarity=0.270 Sum_probs=108.0
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc------cccccC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------LNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------~~~~i~ 78 (190)
++++|++++|+..++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++... ....++
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhHHHHhhcEE
Confidence 46789999998888999999999999999999999999999999999977 77899999999766421 111223
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCcceeecc-cCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 79 FSAEDRTENIRRVGEVAKLFADAGLICIASL-ISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|.+++.. .+....+...... +|+||+|| .+||+++.+|+++ +|||||++||...+..+.+.+++-
T Consensus 80 ~~~q~~~-----------~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~ll--ilDEP~~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 80 MVFQDFA-----------LFPHLTVLENIALGLSGGQQQRVALARALAMDPDVL--LLDEPTSALDPITRREVRALLKSL 146 (178)
T ss_pred EEecCCc-----------cCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 3332210 0101111111111 99999999 6999999999999 999999999999999999988864
Q ss_pred C
Q 029613 157 K 157 (190)
Q Consensus 157 ~ 157 (190)
+
T Consensus 147 ~ 147 (178)
T cd03229 147 Q 147 (178)
T ss_pred H
Confidence 3
No 125
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-29 Score=205.02 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=116.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
+|+++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .....++|
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM-TPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 789999999999888999999999999999999999999999999999977 7889999999976532 11112333
Q ss_pred Chhh--------HHHHHHH----------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAED--------RTENIRR----------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+++ ..+++.. -..+..++...++. ..+..+|+||+|| .+||+++.+|+++
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 165 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIM 165 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEE
Confidence 3322 1122110 01222334444543 2377899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||...++.+++.+++.
T Consensus 166 --llDEPt~gLD~~~~~~l~~~L~~l 189 (265)
T PRK10253 166 --LLDEPTTWLDISHQIDLLELLSEL 189 (265)
T ss_pred --EEeCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 126
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.3e-29 Score=194.31 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=109.3
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCCh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFSA 81 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~~ 81 (190)
++++|++++|++.++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|.+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 46789999998778999999999999999999999999999999999977 7789999999976642 1122334444
Q ss_pred hhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 82 EDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
++..- +....+.... .+|+||+|| .+||+++.+|+++ +|||||++||...++.+++.+++-..+|
T Consensus 80 q~~~~-----------~~~~tv~~~~-~LS~G~~qrv~laral~~~p~il--llDEPt~~LD~~~~~~l~~~l~~~~~~g 145 (173)
T cd03230 80 EEPSL-----------YENLTVRENL-KLSGGMKQRLALAQALLHDPELL--ILDEPTSGLDPESRREFWELLRELKKEG 145 (173)
T ss_pred cCCcc-----------ccCCcHHHHh-hcCHHHHHHHHHHHHHHcCCCEE--EEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 33110 0000000000 189999999 6999999999999 9999999999999999999998753334
No 127
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-29 Score=203.84 Aligned_cols=152 Identities=20% Similarity=0.151 Sum_probs=116.7
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~ 72 (190)
++|+++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+ +.+|+|.++|.++.. .
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence 368999999999988899999999999999999999999999999999998742 478999999976531 1
Q ss_pred cccccCCChhh-------HHHHHHH--------------HHHHHHHHHHcCcc--------eeecccCccHHHH-HHHHH
Q 029613 73 LNKNLGFSAED-------RTENIRR--------------VGEVAKLFADAGLI--------CIASLISPYRKDR-DACRA 122 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iara 122 (190)
.+..++|.+++ ..+++.. ...+..++...++. ..+..+|+||+|| .+||+
T Consensus 98 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 177 (267)
T PRK14235 98 LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA 177 (267)
T ss_pred HhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 12223333222 2222211 01123344444542 2367799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 178 l~~~p~ll--lLDEPt~~LD~~~~~~l~~~L~~l 209 (267)
T PRK14235 178 IAVSPEVI--LMDEPCSALDPIATAKVEELIDEL 209 (267)
T ss_pred HHcCCCEE--EEeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999864
No 128
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.4e-29 Score=202.29 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=116.3
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-----CcEEEEcCccccc----
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-----KLSYILDGDNLRH---- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-----~g~i~~~g~~~~~---- 71 (190)
|.++++++|++++|+++.+++++||++.+|++++|+|+||||||||+++|+|++ ++. +|.|.++|.++..
T Consensus 1 ~~~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN-DIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred CCceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CccccCCcccEEEECCEEccccccC
Confidence 788999999999999888999999999999999999999999999999999987 443 6999999876531
Q ss_pred --ccccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHH
Q 029613 72 --GLNKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DAC 120 (190)
Q Consensus 72 --~~~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~ia 120 (190)
..+..++|.+++ ..+++.. . ..+...+...++ ...+..+|+||+|| .+|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 112223333332 1222211 0 011112222332 13367799999999 699
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 160 ral~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14249 160 RVLAIEPEVI--LMDEPCSALDPVSTMRIEELMQEL 193 (251)
T ss_pred HHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999988865
No 129
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=206.85 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=117.9
Q ss_pred ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613 4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------- 71 (190)
+++++|++++|++ .++++++||++++|++++|+|+||||||||+++|+|++ ++..|.|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-KPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchH
Confidence 4789999999963 36999999999999999999999999999999999977 7889999999977632
Q ss_pred -ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-e----eecccCccHHHH-HHHHHh
Q 029613 72 -GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-C----IASLISPYRKDR-DACRAM 123 (190)
Q Consensus 72 -~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~iaral 123 (190)
..+..++|.+++ ..+++.. ...+..++...++. . .+..||+||+|| .+||++
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 123344554443 1122211 01223445556653 2 377899999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..+..+.+.+++.
T Consensus 161 ~~~p~il--llDEPt~~LD~~~~~~l~~~l~~l 191 (286)
T PRK13646 161 AMNPDII--VLDEPTAGLDPQSKRQVMRLLKSL 191 (286)
T ss_pred HhCCCEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999988864
No 130
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=1.4e-29 Score=223.35 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=119.5
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNK 75 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~ 75 (190)
|.+|++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... .+.
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHhC
Confidence 345799999999999888999999999999999999999999999999999987 78899999999765321 011
Q ss_pred ccCCChhh--------HHHHHHH--------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 76 NLGFSAED--------RTENIRR--------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~--------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
.++|.+++ ..+++.. -..+..++...++.. .+..||+||+|| .+||+++.+|+++ +|
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll--lL 164 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL--IL 164 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE--EE
Confidence 23343332 1222210 112334455555532 367899999999 6999999999999 99
Q ss_pred eCCchhhhhcChHHHHHHHHcC
Q 029613 135 NMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 135 DEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||||++||+..++.+++.+++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~ 186 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIREL 186 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 131
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=4.3e-29 Score=194.74 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=111.4
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh-
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE- 82 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~- 82 (190)
|++++|++++|+...+++ +||++++|++++|+|+||||||||+++|+|++ ++.+|.+.++|.++.......++|.++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCcccChhhhhhEEeccCC
Confidence 478999999998765665 99999999999999999999999999999977 788999999997753211111122221
Q ss_pred -------hHHHHHHHH-------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613 83 -------DRTENIRRV-------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA 143 (190)
Q Consensus 83 -------~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~ 143 (190)
...+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++||+
T Consensus 79 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l--llDEP~~~LD~ 156 (195)
T PRK13541 79 LGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW--LLDEVETNLSK 156 (195)
T ss_pred cCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcccCCH
Confidence 112222211 12233334444432 367799999999 6999999999999 99999999999
Q ss_pred cChHHHHHHHHc
Q 029613 144 RDPKGLYKLARA 155 (190)
Q Consensus 144 ~~~~~~~~~~~~ 155 (190)
..++.+.+.+++
T Consensus 157 ~~~~~l~~~l~~ 168 (195)
T PRK13541 157 ENRDLLNNLIVM 168 (195)
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
No 132
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.4e-29 Score=193.73 Aligned_cols=136 Identities=23% Similarity=0.238 Sum_probs=107.4
Q ss_pred cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----cccccC
Q 029613 5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i~ 78 (190)
++++|++++|++. .+++++||++++|++++|+||||||||||+++|+|++ ++.+|++.++|.++... .+..++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4678999999875 7999999999999999999999999999999999987 77899999999876421 112233
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 79 FSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
|.+++.. .. . ....+.. +|+||+|| .+||+++.+|+++ +|||||++||...+..+.+.+++-.
T Consensus 80 ~~~~~~~-~~----~-~t~~e~l--------LS~G~~~rl~la~al~~~p~ll--llDEP~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 80 YVPQDPF-LF----S-GTIRENI--------LSGGQRQRIAIARALLRDPPIL--ILDEATSALDPETEALILEALRALA 143 (171)
T ss_pred EEcCCch-hc----c-chHHHHh--------hCHHHHHHHHHHHHHhcCCCEE--EEECCCcCCCHHHHHHHHHHHHHhc
Confidence 3333221 00 0 0011111 99999999 6999999999999 9999999999999999999998653
No 133
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.7e-29 Score=222.67 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=119.0
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNK 75 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~ 75 (190)
|.+|++++|++++|+++.+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... .+.
T Consensus 2 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 2 ATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-EPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred CCceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc-CCCccEEEECCEECCCCCHHHHHHC
Confidence 346899999999999888999999999999999999999999999999999987 77899999999765321 112
Q ss_pred ccCCChhh--------HHHHHH-------------------HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613 76 NLGFSAED--------RTENIR-------------------RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM 123 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~-------------------~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral 123 (190)
.++|.+++ ..+++. ....+..++...++.. .+..||+||+|| .+||++
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 23333322 111111 0112334455555532 367899999999 599999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..+..+++.+++.
T Consensus 161 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l 191 (510)
T PRK09700 161 MLDAKVI--IMDEPTSSLTNKEVDYLFLIMNQL 191 (510)
T ss_pred hcCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999888764
No 134
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.8e-29 Score=202.03 Aligned_cols=154 Identities=21% Similarity=0.156 Sum_probs=117.7
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH----- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~----- 71 (190)
|.+|++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++..
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred CccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 77899999999999888899999999999999999999999999999999997732 268999999987632
Q ss_pred -ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHH
Q 029613 72 -GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACR 121 (190)
Q Consensus 72 -~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iar 121 (190)
..+..++|.+++ ..+++... ..+..++...++ ...+..+|+||+|| .+||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 112223333322 12222110 112233344443 12367799999999 6999
Q ss_pred HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++.+|+++ +|||||++||+..+..+++.+++.
T Consensus 161 al~~~p~ll--llDEP~~~LD~~~~~~l~~~L~~~ 193 (251)
T PRK14270 161 TIAVKPDVI--LMDEPTSALDPISTLKIEDLMVEL 193 (251)
T ss_pred HHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999988864
No 135
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.96 E-value=9.5e-30 Score=195.01 Aligned_cols=139 Identities=22% Similarity=0.260 Sum_probs=107.6
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEEcccCCHHHHHhheE
Confidence 467899999975 56999999999999999999999999999999999987 7889999999987642 1112233
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 79 FSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
|.+++..- .. ....+. . +|+||+|| .+||+++.+|+++ +|||||++||+..++.+.+.+++-.
T Consensus 80 ~~~q~~~~-~~-----~tv~~~------l--LS~G~~qrv~la~al~~~p~~l--llDEPt~~LD~~~~~~l~~~l~~~~ 143 (173)
T cd03246 80 YLPQDDEL-FS-----GSIAEN------I--LSGGQRQRLGLARALYGNPRIL--VLDEPNSHLDVEGERALNQAIAALK 143 (173)
T ss_pred EECCCCcc-cc-----CcHHHH------C--cCHHHHHHHHHHHHHhcCCCEE--EEECCccccCHHHHHHHHHHHHHHH
Confidence 33332110 00 001111 1 89999999 6999999999999 9999999999999999999987643
Q ss_pred CCC
Q 029613 158 IKG 160 (190)
Q Consensus 158 ~~~ 160 (190)
..|
T Consensus 144 ~~~ 146 (173)
T cd03246 144 AAG 146 (173)
T ss_pred hCC
Confidence 334
No 136
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=9.7e-30 Score=195.72 Aligned_cols=139 Identities=19% Similarity=0.175 Sum_probs=109.3
Q ss_pred cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCC
Q 029613 5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~ 79 (190)
++++|++++|++. ++++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++.. ..+..++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4678999999765 7999999999999999999999999999999999977 7889999999986532 11222333
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 80 SAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
.+++..- .. ..+ .+ .++..+|+||+|| .+||+++.+|+++ +|||||++||...++.+++.+++..
T Consensus 80 ~~q~~~~-~~--~tv---~~-----~i~~~LS~G~~qrv~laral~~~p~~l--llDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 80 LNQRPYL-FD--TTL---RN-----NLGRRFSGGERQRLALARILLQDAPIV--LLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred EccCCee-ec--ccH---HH-----hhcccCCHHHHHHHHHHHHHhcCCCEE--EEECCcccCCHHHHHHHHHHHHHHc
Confidence 3332110 00 000 00 0166799999999 6999999999999 9999999999999999999998753
No 137
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5e-29 Score=201.45 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=117.2
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCccccc-----
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRH----- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~----- 71 (190)
|+..++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++. .+ .+|+|.++|.++..
T Consensus 1 ~~~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 1 MNNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred CCcEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 6678899999999988889999999999999999999999999999999999873 13 58999999977531
Q ss_pred -ccccccCCChhh--------HHHHHHH------------H-HHHHHHHHHcCcc--------eeecccCccHHHH-HHH
Q 029613 72 -GLNKNLGFSAED--------RTENIRR------------V-GEVAKLFADAGLI--------CIASLISPYRKDR-DAC 120 (190)
Q Consensus 72 -~~~~~i~~~~~~--------~~~~~~~------------~-~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~ia 120 (190)
..+..++|.+++ ..+++.. . ..+...+...++. ..+..+|+||+|| .+|
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 112223333322 1222211 0 1122333344432 2366799999999 699
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++.+|+++ +|||||++||...++.+++.+++-
T Consensus 161 ral~~~p~ll--llDEP~~gLD~~~~~~l~~~l~~~ 194 (252)
T PRK14256 161 RTIAVKPEVI--LMDEPASALDPISTLKIEELIEEL 194 (252)
T ss_pred HHHhcCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999998864
No 138
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.7e-29 Score=197.80 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=116.1
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccCCCh
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLGFSA 81 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~~~~ 81 (190)
+|++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++... ....++|.+
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-HVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCeeEEECCEEccchhhhhceEEee
Confidence 3789999999998888999999999999999999999999999999999977 78899999999765321 111122222
Q ss_pred hh--------HHHHHHHH---------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 82 ED--------RTENIRRV---------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 82 ~~--------~~~~~~~~---------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
+. ..+++... ......+...++. ..+..+|+||+|| .+||+++.+|+++ +|||||+
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llDEPt~ 166 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLW--LLDEPYA 166 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcc
Confidence 21 22222110 1122334444442 2367799999999 6999999999999 9999999
Q ss_pred hhhhcChHHHHHHHHcC
Q 029613 140 LCEARDPKGLYKLARAG 156 (190)
Q Consensus 140 ~ld~~~~~~~~~~~~~~ 156 (190)
+||...++.+.+.+++.
T Consensus 167 ~LD~~~~~~l~~~l~~~ 183 (214)
T PRK13543 167 NLDLEGITLVNRMISAH 183 (214)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 139
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.96 E-value=3.4e-29 Score=202.46 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=115.0
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------------
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------------- 71 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------------- 71 (190)
++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccccccch
Confidence 46889999998888999999999999999999999999999999999977 7889999999976521
Q ss_pred ----ccccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHH
Q 029613 72 ----GLNKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACR 121 (190)
Q Consensus 72 ----~~~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iar 121 (190)
..+..++|.+++ ..+++.. ...+...+...++.. .+..+|+||+|| .+||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 112223333222 1222211 012233444555532 367799999999 6999
Q ss_pred HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++.+|+++ +|||||++||+..+..+++.+++-
T Consensus 160 al~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~ 192 (252)
T TIGR03005 160 ALAMRPKVM--LFDEVTSALDPELVGEVLNVIRRL 192 (252)
T ss_pred HHHcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999888764
No 140
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.1e-29 Score=201.61 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=115.9
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~ 72 (190)
+|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++.. .
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 378999999999888899999999999999999999999999999999998742 258999999976531 1
Q ss_pred cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral 123 (190)
.+..++|.+++ ..+++... ..+...+...++ ...+..+|+||+|| .+||++
T Consensus 86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 12233443332 12222110 112222333332 22367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+.+|+++ +|||||++||...+..+++.+++..
T Consensus 166 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~~ 197 (254)
T PRK14273 166 AIEPNVI--LMDEPTSALDPISTGKIEELIINLK 197 (254)
T ss_pred HcCCCEE--EEeCCCcccCHHHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999998753
No 141
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4e-29 Score=203.99 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=116.4
Q ss_pred cccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 3 TVGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
+|++++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. ..+..
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-KVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhh
Confidence 47899999999975 45999999999999999999999999999999999987 7889999999977532 11223
Q ss_pred cCCChhhH---------HHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 77 LGFSAEDR---------TENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 77 i~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
++|.+++. .+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 34433321 111110 012233444455432 367799999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+.+.+++-
T Consensus 165 --lLDEPt~~LD~~~~~~l~~~L~~~ 188 (269)
T PRK13648 165 --ILDEATSMLDPDARQNLLDLVRKV 188 (269)
T ss_pred --EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 142
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.8e-29 Score=204.95 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=118.2
Q ss_pred CCcccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cc
Q 029613 1 MATVGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GL 73 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~ 73 (190)
|++|++++|++++|++ ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..
T Consensus 1 m~~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 1 MNKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-EEFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred CCceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEECCcCCHHHH
Confidence 7778999999999974 35899999999999999999999999999999999987 7889999999977532 11
Q ss_pred ccccCCChhh---------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 74 NKNLGFSAED---------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 74 ~~~i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
...++|.+++ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2233443332 11222110 11223344444432 367799999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+++.+++-
T Consensus 160 ~ll--llDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 160 EII--ILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred CEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999998754
No 143
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=2.4e-29 Score=200.66 Aligned_cols=149 Identities=18% Similarity=0.151 Sum_probs=113.3
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~ 79 (190)
|+++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++... ....++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL-PVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 46889999999888999999999999999999999999999999999987 78899999998765321 1223344
Q ss_pred Chhh--------HHHHHHHH--------H-HHHHHHHHcC-----cceeecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 80 SAED--------RTENIRRV--------G-EVAKLFADAG-----LICIASLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 80 ~~~~--------~~~~~~~~--------~-~~~~~~~~~~-----~~~~~~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
.+++ ..+++... . ....++...+ ....+..+|+||+|| .+||+++.+|+++ +|||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il--llDE 157 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL--LLDE 157 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EecC
Confidence 4332 11222110 0 0111222222 123467799999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHcC
Q 029613 137 PLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~~ 156 (190)
||++||+..++.+++.+++-
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~ 177 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRL 177 (230)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999988864
No 144
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.4e-29 Score=189.69 Aligned_cols=151 Identities=20% Similarity=0.219 Sum_probs=114.0
Q ss_pred CcccccCcceeccCccc--cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccC
Q 029613 2 ATVGNSTNIFWQESPIG--RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLG 78 (190)
Q Consensus 2 ~~~l~~~~l~~~~~~~~--~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~ 78 (190)
-.++.+++++.+|.+++ +++|+|+++.+|+.++++||||||||||+++++|+. +|..|.|.++++.+..+ ....+-
T Consensus 1 M~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~-~P~~G~i~l~~r~i~gPgaergvV 79 (259)
T COG4525 1 MCMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV-TPSRGSIQLNGRRIEGPGAERGVV 79 (259)
T ss_pred CceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc-CcccceEEECCEeccCCCccceeE
Confidence 03788999999998877 999999999999999999999999999999999987 88999999999876431 111111
Q ss_pred CChhh------HHHHH------------HHHHHHHHHHHHcCcc----eeecccCccHHHHH-HHHHhCCCCCeEEEEee
Q 029613 79 FSAED------RTENI------------RRVGEVAKLFADAGLI----CIASLISPYRKDRD-ACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 79 ~~~~~------~~~~~------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr~-iarall~~~~il~vllD 135 (190)
|..+. ..+|. .+.....+.+...++. .++..||||||||. +|||+..+|+++ +||
T Consensus 80 FQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~L--lLD 157 (259)
T COG4525 80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLL--LLD 157 (259)
T ss_pred eccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceE--eec
Confidence 11111 11111 1111223344555554 35888999999996 999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHc
Q 029613 136 MPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~ 155 (190)
||+.+||.-.++.+.+.+-+
T Consensus 158 EPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 158 EPFGALDALTREQMQELLLD 177 (259)
T ss_pred CchhhHHHHHHHHHHHHHHH
Confidence 99999999888877666543
No 145
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.8e-29 Score=204.16 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=113.8
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----c----cccc
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----L----NKNL 77 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~----~~~i 77 (190)
..+|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... . ...+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4568888888888999999999999999999999999999999999977 78899999999765320 0 1223
Q ss_pred CCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 78 GFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
+|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il-- 182 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL-- 182 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE--
Confidence 333332 1222211 012233445555532 367899999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||...++.+++.+++-
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~ 206 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRL 206 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 146
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.6e-29 Score=192.62 Aligned_cols=149 Identities=20% Similarity=0.249 Sum_probs=113.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc----ccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL----NKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~----~~~i~~ 79 (190)
|++++|++|+|+.+.+++++|+++++|.+++|+||||||||||+.++++++ +.++|.|.++|.++.... ...++.
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecccCChHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999988 788999999998875311 000111
Q ss_pred Chhh-------------------------HHHHHHHHHHHHHHHHHcCcc-eeecccCccHHHHH-HHHHhCCCCCeEEE
Q 029613 80 SAED-------------------------RTENIRRVGEVAKLFADAGLI-CIASLISPYRKDRD-ACRAMLPDSNFIEV 132 (190)
Q Consensus 80 ~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~lS~g~kqr~-iarall~~~~il~v 132 (190)
..++ ..+....+.+..+.+...++. .+...||||||||+ +|..++++.+++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv-- 157 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV-- 157 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEE--
Confidence 1110 112222333333333333332 24678999999997 999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHc
Q 029613 133 FMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+||||+++||-+-.-++.+.+++
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRR 180 (252)
T ss_pred EecCcccccchHHHHHHHHHHHH
Confidence 99999999998877666666554
No 147
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.7e-29 Score=203.65 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=115.2
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~~ 73 (190)
+++++|++++|+...+++++||++++|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++.. ..
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence 78999999999988899999999999999999999999999999999998732 578999999976531 11
Q ss_pred ccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhCCC
Q 029613 74 NKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall~~ 126 (190)
+..++|.+++ ..+++... ..+..++...++ ...+..+|+||+|| .+||+++.+
T Consensus 93 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 172 (269)
T PRK14259 93 RRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172 (269)
T ss_pred hhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 2233443332 22222110 111222333332 22367799999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||+..++.+++.+++-
T Consensus 173 p~ll--lLDEPt~gLD~~~~~~l~~~l~~~ 200 (269)
T PRK14259 173 PEVI--LMDEPCSALDPISTLKIEETMHEL 200 (269)
T ss_pred CCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999864
No 148
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=4.8e-29 Score=200.20 Aligned_cols=151 Identities=17% Similarity=0.078 Sum_probs=114.0
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccc-----cccccC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHG-----LNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~-----~~~~i~ 78 (190)
|+++|++++|++..+++++||++++|++++|+||||||||||+++|+|++. ++.+|.|.++|.++... .+..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 468999999988889999999999999999999999999999999999742 57899999999765320 111233
Q ss_pred CChhh--------HHHHHHH-------------------HHHHHHHHHHcCcc-----eeec-ccCccHHHH-HHHHHhC
Q 029613 79 FSAED--------RTENIRR-------------------VGEVAKLFADAGLI-----CIAS-LISPYRKDR-DACRAML 124 (190)
Q Consensus 79 ~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~-----~~~~-~lS~g~kqr-~iarall 124 (190)
|.+++ ..+++.. ...+...+...++. ..+. .+|+||+|| .+||+++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 33332 1111110 01223344444443 1244 499999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
.+|+++ +|||||++||...++.+++.+++-.
T Consensus 161 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~~ 191 (243)
T TIGR01978 161 LEPKLA--ILDEIDSGLDIDALKIVAEGINRLR 191 (243)
T ss_pred cCCCEE--EecCCcccCCHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999998643
No 149
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=3e-29 Score=204.57 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=116.6
Q ss_pred CcccccCcceeccCc---------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc
Q 029613 2 ATVGNSTNIFWQESP---------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG 72 (190)
Q Consensus 2 ~~~l~~~~l~~~~~~---------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~ 72 (190)
.+||+++|++++|+. .++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~ 80 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGELLIDDHPLHFG 80 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCC
Confidence 358999999999962 46999999999999999999999999999999999987 78899999999765321
Q ss_pred ----cccccCCChhhH----------HHHHHH-------------HHHHHHHHHHcCcc-e----eecccCccHHHH-HH
Q 029613 73 ----LNKNLGFSAEDR----------TENIRR-------------VGEVAKLFADAGLI-C----IASLISPYRKDR-DA 119 (190)
Q Consensus 73 ----~~~~i~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~i 119 (190)
....++|.+++. .+++.. ...+..++...++. . .+..+|+||+|| .+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 160 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence 112233333221 111110 01233445555552 1 357799999999 69
Q ss_pred HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||+++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 161 aral~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 195 (267)
T PRK15112 161 ARALILRPKVI--IADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred HHHHHhCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999988864
No 150
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2e-29 Score=222.06 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=117.7
Q ss_pred CcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccc-----ccc
Q 029613 2 ATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHG-----LNK 75 (190)
Q Consensus 2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~-----~~~ 75 (190)
.+|++++|++++|++..+++++||++.+|++++|+||||||||||+|+|+|++++ +.+|.|.++|.++... .+.
T Consensus 3 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred CceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 3589999999999988899999999999999999999999999999999998733 3799999999765321 112
Q ss_pred ccCCChhh--------HHHHHH--------------H-HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 76 NLGFSAED--------RTENIR--------------R-VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~--------------~-~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
.++|.+++ ..+++. . ...+..++...++.. .+..||+||+|| .+||+++.+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 23333322 111111 0 112334455555532 367899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..+..+.+.+++.
T Consensus 163 ~ll--lLDEPt~~LD~~~~~~l~~~l~~l 189 (506)
T PRK13549 163 RLL--ILDEPTASLTESETAVLLDIIRDL 189 (506)
T ss_pred CEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999888764
No 151
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=4.1e-29 Score=219.27 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=117.3
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
|. ||+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. .....
T Consensus 1 m~-~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 1 MS-SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-PLLSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred Cc-eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCceEEECCcccccCCHHHHHHH
Confidence 54 799999999998888999999999999999999999999999999999987 7889999998865421 11122
Q ss_pred cCCChhh----------------HHHHHH----HHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 77 LGFSAED----------------RTENIR----RVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 77 i~~~~~~----------------~~~~~~----~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
+++.+++ ..+++. .-..+..++...++. ..+..||+||+|| .+|++++.+|+++
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll- 157 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLL- 157 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE-
Confidence 3333221 111110 011233445555553 2377899999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+.+.+++-
T Consensus 158 -lLDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 158 -ILDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred -EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 152
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.5e-29 Score=195.40 Aligned_cols=138 Identities=20% Similarity=0.257 Sum_probs=108.1
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i 77 (190)
+|++++|++++| +++++||++++|++++|+|+||||||||+++|+|++ ++.+|++.++|.++... .+..+
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccCHHHHHhCCe
Confidence 478999999998 899999999999999999999999999999999987 78899999999776431 12234
Q ss_pred CCChhhHH--HHH--HHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613 78 GFSAEDRT--ENI--RRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL 152 (190)
Q Consensus 78 ~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~ 152 (190)
+|.+++.. ... ..+.+..... ..+|+||+|| .+||+++.+|+++ +|||||++||+..++.+.+.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~---------~~LS~G~~qrl~la~al~~~p~ll--llDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALS---------SLLSGGNQQKVVLARWLARDPRVL--ILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHH---------hhcCHHHHHHHHHHHHHccCCCEE--EECCCCcCCCHHHHHHHHHH
Confidence 55544311 000 0011100000 0199999999 6999999999999 99999999999999999999
Q ss_pred HHcC
Q 029613 153 ARAG 156 (190)
Q Consensus 153 ~~~~ 156 (190)
+++-
T Consensus 147 l~~~ 150 (182)
T cd03215 147 IREL 150 (182)
T ss_pred HHHH
Confidence 8864
No 153
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.7e-29 Score=202.11 Aligned_cols=152 Identities=21% Similarity=0.189 Sum_probs=116.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~ 73 (190)
+++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++. + +.+|.|.++|.++.. ..
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 6899999999988889999999999999999999999999999999999873 1 478999999977531 11
Q ss_pred ccccCCChhh-------HHHHHHH-------------HHHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613 74 NKNLGFSAED-------RTENIRR-------------VGEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall 124 (190)
+..++|.+++ ..+++.. ...+..++...++ ...+..+|+||+|| .+||+++
T Consensus 93 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 93 RAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred hcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 2233333332 1222211 0122333444443 12367799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
.+|+++ +|||||++||+..++.+++.+++..
T Consensus 173 ~~p~ll--lLDEPt~~LD~~~~~~l~~~L~~~~ 203 (260)
T PRK10744 173 IRPEVL--LLDEPCSALDPISTGRIEELITELK 203 (260)
T ss_pred CCCCEE--EEcCCCccCCHHHHHHHHHHHHHHh
Confidence 999999 9999999999999999999998753
No 154
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=5.2e-29 Score=202.23 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=115.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
|++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++.. .....++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-SPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 678999999999888999999999999999999999999999999999977 7889999999976532 01112233
Q ss_pred Chhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhC------CCCC
Q 029613 80 SAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAML------PDSN 128 (190)
Q Consensus 80 ~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall------~~~~ 128 (190)
.+++ ..+++.. -..+..++...++.. .+..||+||+|| .+||+++ .+|+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 2221 1222211 011233444445532 367899999999 6999999 5899
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ +|||||++||+..++.+.+.+++.
T Consensus 161 ll--lLDEPt~~LD~~~~~~l~~~l~~~ 186 (258)
T PRK13548 161 WL--LLDEPTSALDLAHQHHVLRLARQL 186 (258)
T ss_pred EE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 99 999999999999999999888764
No 155
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.9e-29 Score=201.81 Aligned_cols=152 Identities=20% Similarity=0.183 Sum_probs=116.3
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~ 72 (190)
++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++.+ +.+|+|.++|.++.. .
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 378999999999888899999999999999999999999999999999997732 378999999977531 1
Q ss_pred cccccCCChhh-------HHHHHHHH------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613 73 LNKNLGFSAED-------RTENIRRV------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall 124 (190)
.+..++|.+++ ..+++... ..+..++...++ ...+..+|+||+|| .+||+++
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 12233443332 12222210 012233444443 12366799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||...+..+++.+++.
T Consensus 171 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~l 200 (258)
T PRK14268 171 VKPKII--LFDEPTSALDPISTARIEDLIMNL 200 (258)
T ss_pred cCCCEE--EEeCCCcccCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999864
No 156
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.8e-29 Score=195.41 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=111.8
Q ss_pred ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccccccccC
Q 029613 4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHGLNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~~~~~i~ 78 (190)
+++++|+++.|++ +++++++||++++|++++|+|+||||||||+++|+|+.. ++.+|++.++|.++.......++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5789999999974 679999999999999999999999999999999999753 47899999999876422223344
Q ss_pred CChhhH--------HHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613 79 FSAEDR--------TENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGL 149 (190)
Q Consensus 79 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~ 149 (190)
|.+++. .+++.. ...+ ..+|+||+|| .+||+++.+|+++ +|||||++||...++.+
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~----~~~~---------~~LSgGe~qrv~la~al~~~p~vl--llDEP~~~LD~~~~~~l 147 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRF----SALL---------RGLSVEQRKRLTIGVELAAKPSIL--FLDEPTSGLDSQAAYNI 147 (192)
T ss_pred EecccCccccCCcHHHHHHH----HHHH---------hcCCHHHhHHHHHHHHHhcCCcEE--EEeCCCcCCCHHHHHHH
Confidence 444431 122111 0000 1799999999 6999999999999 99999999999999999
Q ss_pred HHHHHcCCCCC
Q 029613 150 YKLARAGKIKG 160 (190)
Q Consensus 150 ~~~~~~~~~~~ 160 (190)
.+.+++-...|
T Consensus 148 ~~~l~~~~~~~ 158 (192)
T cd03232 148 VRFLKKLADSG 158 (192)
T ss_pred HHHHHHHHHcC
Confidence 99988643334
No 157
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.96 E-value=5.6e-29 Score=198.14 Aligned_cols=152 Identities=16% Similarity=0.064 Sum_probs=114.2
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh-h
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE-D 83 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~-~ 83 (190)
+.++++++.|+.+++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++... .....+.+. .
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~-~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PPDSGTVTVRGRVSSLL-GLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEchhh-cccccCCCCCc
Confidence 67889999999999999999999999999999999999999999999977 78899999999765311 111111111 1
Q ss_pred HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcCh
Q 029613 84 RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDP 146 (190)
Q Consensus 84 ~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~ 146 (190)
..+++.. ...+..++...++. ..+..+|+||+|| .+||+++.+|+++ +|||||++||...+
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll--llDEP~~gLD~~~~ 178 (224)
T cd03220 101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDIL--LIDEVLAVGDAAFQ 178 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcccCCHHHH
Confidence 1111110 01122333344443 2367899999999 6999999999999 99999999999999
Q ss_pred HHHHHHHHcCCCCC
Q 029613 147 KGLYKLARAGKIKG 160 (190)
Q Consensus 147 ~~~~~~~~~~~~~~ 160 (190)
+.+++.+++-...|
T Consensus 179 ~~~~~~l~~~~~~~ 192 (224)
T cd03220 179 EKCQRRLRELLKQG 192 (224)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999888643333
No 158
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.5e-29 Score=201.91 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=115.4
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~ 72 (190)
+|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++. + +.+|.|.++|.++.. .
T Consensus 20 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred ceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 37899999999998889999999999999999999999999999999999752 1 578999999977632 1
Q ss_pred cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral 123 (190)
....++|.+++ ..+++... ..+...+...++ ...+..+|+||+|| .+||++
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 12233343322 22222110 011222333333 12367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||...++.+++.+++-
T Consensus 180 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 210 (268)
T PRK14248 180 AMKPAVL--LLDEPASALDPISNAKIEELITEL 210 (268)
T ss_pred hCCCCEE--EEcCCCcccCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999998864
No 159
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=207.21 Aligned_cols=150 Identities=16% Similarity=0.094 Sum_probs=116.7
Q ss_pred ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613 4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------- 71 (190)
.++++|++++|++ .++|+++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QPTSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECccccccchH
Confidence 3789999999964 56999999999999999999999999999999999977 7889999999987631
Q ss_pred -ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-e----eecccCccHHHH-HHHHHh
Q 029613 72 -GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-C----IASLISPYRKDR-DACRAM 123 (190)
Q Consensus 72 -~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~iaral 123 (190)
..+..++|.+++ ..+++.. ...+..++...++. . .+..||+||+|| .+||++
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 112234444432 1122211 01223345555653 2 367899999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..+..+++.+++-
T Consensus 161 ~~~P~ll--llDEPt~~LD~~~~~~l~~~L~~l 191 (290)
T PRK13634 161 AMEPEVL--VLDEPTAGLDPKGRKEMMEMFYKL 191 (290)
T ss_pred HcCCCEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999888764
No 160
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8e-29 Score=202.04 Aligned_cols=152 Identities=19% Similarity=0.161 Sum_probs=116.9
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~ 72 (190)
++++++|++++|+++++++++||++.+|++++|+|+||||||||+++|+|++.+ +.+|+|.++|.++.. .
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 378999999999888999999999999999999999999999999999998742 478999999977631 1
Q ss_pred cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral 123 (190)
.+..++|.+++ ..+++... ..+...+...++ ...+..+|+|++|| .+||++
T Consensus 99 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral 178 (267)
T PRK14237 99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178 (267)
T ss_pred HhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 12234443332 22222210 111222334333 12367899999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..++.+++.+++.
T Consensus 179 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 209 (267)
T PRK14237 179 AVKPDIL--LMDEPASALDPISTMQLEETMFEL 209 (267)
T ss_pred hcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999875
No 161
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=6.2e-29 Score=200.94 Aligned_cols=151 Identities=18% Similarity=0.133 Sum_probs=115.6
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-----cccc-----
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-----LRHG----- 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-----~~~~----- 72 (190)
+|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.+ +...
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecccccccccccCCHHHH
Confidence 4789999999998888999999999999999999999999999999999977 7889999999865 3210
Q ss_pred ---cccccCCChhhH----------HHHHH-------------HHHHHHHHHHHcCcc-----eeecccCccHHHH-HHH
Q 029613 73 ---LNKNLGFSAEDR----------TENIR-------------RVGEVAKLFADAGLI-----CIASLISPYRKDR-DAC 120 (190)
Q Consensus 73 ---~~~~i~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~ia 120 (190)
....++|.+++. .+++. ....+..++...++. ..+..+|+||+|| .+|
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 011233322221 01110 011233344555542 2367799999999 699
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 161 ral~~~p~vl--llDEP~~~LD~~~~~~l~~~l~~~ 194 (253)
T TIGR02323 161 RNLVTRPRLV--FMDEPTGGLDVSVQARLLDLLRGL 194 (253)
T ss_pred HHHhcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999888763
No 162
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.3e-29 Score=208.35 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=116.8
Q ss_pred cccccCcceecc----CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh---CCCcEEEEcCcccccc---
Q 029613 3 TVGNSTNIFWQE----SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS---RGKLSYILDGDNLRHG--- 72 (190)
Q Consensus 3 ~~l~~~~l~~~~----~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~---~~~g~i~~~g~~~~~~--- 72 (190)
++|+++|++++| +...+++++||++.+||+++|+|+||||||||+++|+|++.+ +.+|.|.++|.++...
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 378999999999 346799999999999999999999999999999999998742 4789999999875320
Q ss_pred -c----ccccCCChhhH----------HHHHH------------------HHHHHHHHHHHcCcc-------eeecccCc
Q 029613 73 -L----NKNLGFSAEDR----------TENIR------------------RVGEVAKLFADAGLI-------CIASLISP 112 (190)
Q Consensus 73 -~----~~~i~~~~~~~----------~~~~~------------------~~~~~~~~~~~~~~~-------~~~~~lS~ 112 (190)
. ...++|.+++. .+++. .-..+..++...++. ..+..||+
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 0 11344433321 11111 011234455666663 34778999
Q ss_pred cHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 113 YRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 113 g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||+|| .||||++.+|+++ ++||||++||...+..+.+.+++.
T Consensus 162 G~~QRv~iArAL~~~P~ll--ilDEPts~LD~~~~~~i~~lL~~l 204 (330)
T PRK15093 162 GECQKVMIAIALANQPRLL--IADEPTNAMEPTTQAQIFRLLTRL 204 (330)
T ss_pred HHHHHHHHHHHHHCCCCEE--EEeCCCCcCCHHHHHHHHHHHHHH
Confidence 99999 5999999999999 999999999999999999888863
No 163
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=207.04 Aligned_cols=155 Identities=16% Similarity=0.119 Sum_probs=117.5
Q ss_pred ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613 4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------- 71 (190)
|++++|++++|+. ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL-QPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEECccccccccH
Confidence 5789999999963 25999999999999999999999999999999999987 7889999999987531
Q ss_pred -ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHh
Q 029613 72 -GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 72 -~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iaral 123 (190)
..+..++|..++ ..+++.. -..+..++...++. ..+..||+||+|| ++||++
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 112234443332 1122211 01233444445552 2367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGL 161 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~ 161 (190)
+.+|+++ +|||||++||+..++.+++.+++-+..|.
T Consensus 160 ~~~p~il--lLDEPt~gLD~~~~~~l~~~l~~l~~~g~ 195 (288)
T PRK13643 160 AMEPEVL--VLDEPTAGLDPKARIEMMQLFESIHQSGQ 195 (288)
T ss_pred HhCCCEE--EEECCccCCCHHHHHHHHHHHHHHHHCCC
Confidence 9999999 99999999999999999988876433343
No 164
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.2e-29 Score=199.61 Aligned_cols=152 Identities=19% Similarity=0.214 Sum_probs=117.2
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--hCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--SRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
+++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++. ++.+|.|.++|.++.. ..+..+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 5889999999998889999999999999999999999999999999999763 3678999999987632 112223
Q ss_pred CCChhh-------HHHHHHHH--------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhCCCC
Q 029613 78 GFSAED-------RTENIRRV--------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~--------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall~~~ 127 (190)
+|.+++ ..+++... ..+..++...++. ..+..+|+||+|| .+||+++.+|
T Consensus 82 ~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 161 (246)
T PRK14269 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP 161 (246)
T ss_pred EEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 333332 22222110 1123344555552 2356799999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+++ +|||||++||...+..+.+.+++..
T Consensus 162 ~ll--lLDEP~~~LD~~~~~~l~~~l~~~~ 189 (246)
T PRK14269 162 KLL--LLDEPTSALDPISSGVIEELLKELS 189 (246)
T ss_pred CEE--EEcCCcccCCHHHHHHHHHHHHHHh
Confidence 999 9999999999999999999998753
No 165
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.2e-29 Score=209.82 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=117.5
Q ss_pred cccccCcceeccC----------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-
Q 029613 3 TVGNSTNIFWQES----------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH- 71 (190)
Q Consensus 3 ~~l~~~~l~~~~~----------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~- 71 (190)
++|+++|++++|+ .+.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~-~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE-TPTGGELYYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC-CCCCcEEEECCEEcCcC
Confidence 4789999999995 257999999999999999999999999999999999987 6789999999987632
Q ss_pred ------ccccccCCChhhH----------HHHHH-------------HHHHHHHHHHHcCcc-----eeecccCccHHHH
Q 029613 72 ------GLNKNLGFSAEDR----------TENIR-------------RVGEVAKLFADAGLI-----CIASLISPYRKDR 117 (190)
Q Consensus 72 ------~~~~~i~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr 117 (190)
..+..++|.+++. .+++. ....+..++...++. .++..||+||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 1122344444331 11111 012234455555552 3478899999999
Q ss_pred -HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 118 -DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 118 -~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.||||++.+|+++ ++||||++||...+..+++.+++.
T Consensus 163 v~iArAL~~~P~lL--ilDEPts~LD~~~~~~i~~lL~~l 200 (327)
T PRK11308 163 IAIARALMLDPDVV--VADEPVSALDVSVQAQVLNLMMDL 200 (327)
T ss_pred HHHHHHHHcCCCEE--EEECCCccCCHHHHHHHHHHHHHH
Confidence 6999999999999 999999999999999999888763
No 166
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.96 E-value=3.4e-29 Score=221.57 Aligned_cols=148 Identities=25% Similarity=0.227 Sum_probs=114.8
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS 80 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~ 80 (190)
++++|++++|++ .++|+|+||++++|+.++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .++..++|.
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 678999999975 56999999999999999999999999999999999977 8899999999977642 233345565
Q ss_pred hhh-------HHHHHHHH------HHHHHHHHHcCc-----------c----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 81 AED-------RTENIRRV------GEVAKLFADAGL-----------I----CIASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 81 ~~~-------~~~~~~~~------~~~~~~~~~~~~-----------~----~~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
+|+ .++|+... .++.+.+...++ . +....+||||||| ++|||++++|+++
T Consensus 414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il- 492 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL- 492 (529)
T ss_pred ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE-
Confidence 554 23333211 111112222111 1 1245699999999 7999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHc
Q 029613 132 VFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+||||||+||.+..+.+++.+++
T Consensus 493 -iLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 493 -LLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred -EEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999998885
No 167
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.1e-29 Score=209.31 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=115.8
Q ss_pred cccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------
Q 029613 3 TVGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------ 71 (190)
Q Consensus 3 ~~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------ 71 (190)
++|+++|++++|+. .++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCEEccccccccc
Confidence 47899999999964 35999999999999999999999999999999999987 7889999999865422
Q ss_pred --------------ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-----eeecccC
Q 029613 72 --------------GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-----CIASLIS 111 (190)
Q Consensus 72 --------------~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~lS 111 (190)
..+..++|..++ ..+++.. ...+..++...++. ..+..||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 112233443332 1122210 01223344445553 2367899
Q ss_pred ccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 112 PYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 112 ~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+||+|| .+||+++.+|+++ +|||||++||+..+..+++.+++-
T Consensus 179 gGqkqRvaiAraL~~~p~iL--LLDEPtsgLD~~~~~~l~~~L~~l 222 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEIL--IFDEPTAGLDPKGEHEMMQLILDA 222 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence 999999 6999999999999 999999999999999999988764
No 168
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.8e-29 Score=203.84 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=114.2
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccc-cccCCCh
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLN-KNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~-~~i~~~~ 81 (190)
+++++|++++|+ ++.+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..... ..++|.+
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV-RLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEhHHhhccceEEEec
Confidence 588999999995 578999999999999999999999999999999999977 7889999999976532111 1122222
Q ss_pred hh----------HHHHH---------------HH-HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 82 ED----------RTENI---------------RR-VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 82 ~~----------~~~~~---------------~~-~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
++ ..+++ .. -..+...+...++. ..+..+|+||+|| .+||+++.+|+++
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 21 01110 00 01122334444443 2367899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+++.+++-
T Consensus 165 --llDEPt~~LD~~~~~~l~~~L~~~ 188 (272)
T PRK15056 165 --LLDEPFTGVDVKTEARIISLLREL 188 (272)
T ss_pred --EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 169
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.4e-29 Score=205.46 Aligned_cols=150 Identities=17% Similarity=0.104 Sum_probs=115.1
Q ss_pred ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613 4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------- 71 (190)
+++++|++++|++ .++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccCH
Confidence 4789999999974 36999999999999999999999999999999999977 7889999999976532
Q ss_pred -ccccccCCChhh---------HHHHHHHH------------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHh
Q 029613 72 -GLNKNLGFSAED---------RTENIRRV------------GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 72 -~~~~~i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iaral 123 (190)
..+..++|.+++ ..+++... ..+..++...++. ..+..+|+||+|| .+||++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 112233443332 11222110 0122334444553 1367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..++.+++.+++.
T Consensus 161 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 191 (280)
T PRK13649 161 AMEPKIL--VLDEPTAGLDPKGRKELMTLFKKL 191 (280)
T ss_pred HcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999998864
No 170
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=199.21 Aligned_cols=152 Identities=21% Similarity=0.197 Sum_probs=116.3
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH--hhC--CCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL--YSR--GKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l--~~~--~~g~i~~~g~~~~~------~ 72 (190)
+|++++|+++.|+.+.+++++||++++|++++|+|+||||||||+++|+|+. .++ .+|+|.++|.++.. .
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 5789999999999888999999999999999999999999999999999963 133 48999999977632 1
Q ss_pred cccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iaral 123 (190)
.+..++|.+++ ..+++.. . ..+...+...++. ..+..+|+||+|| .+||++
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 12233443332 1222211 0 1122334444432 2366799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..++.+++.+++.
T Consensus 162 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14245 162 AVSPSVL--LMDEPASALDPISTAKVEELIHEL 192 (250)
T ss_pred hcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999875
No 171
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.9e-29 Score=204.12 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=116.6
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------ccccc
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKN 76 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~ 76 (190)
|++++|++++|+ ...+++++||++++||+++|+|+||||||||+++|+|++ ++.+|+|.++|.++.. .....
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEECccccchHHHHHhh
Confidence 478999999996 467999999999999999999999999999999999977 7889999999987631 11223
Q ss_pred cCCChhhH---------HHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 77 LGFSAEDR---------TENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 77 i~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
++|.+++. .+++.. ...+..++...++.. .+..||+||+|| .+||+++.+|+++
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 44444331 122211 012333445555532 367899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..+..+.+.+++-
T Consensus 160 --llDEPt~gLD~~~~~~l~~~l~~l 183 (275)
T PRK13639 160 --VLDEPTSGLDPMGASQIMKLLYDL 183 (275)
T ss_pred --EEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988864
No 172
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.2e-29 Score=215.72 Aligned_cols=157 Identities=20% Similarity=0.273 Sum_probs=122.7
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----------
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---------- 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---------- 72 (190)
++++++|++|+|+++++|+++||++.+||+++|+|.||||||||+|+|+|.+ +|++|+|+++|+.+...
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-PPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-cCCCceEEECCEEccCCCHHHHHhCCc
Confidence 3789999999999999999999999999999999999999999999999977 89999999999865310
Q ss_pred --cccccCCChh-hHHHHH---------------HH-HHHHHHHHHHcCc----ceeecccCccHHHH-HHHHHhCCCCC
Q 029613 73 --LNKNLGFSAE-DRTENI---------------RR-VGEVAKLFADAGL----ICIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 73 --~~~~i~~~~~-~~~~~~---------------~~-~~~~~~~~~~~~~----~~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
..+++.+.+. ...+|+ +. ......++...+. ...+..||.+++|. +||||+..+++
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~ar 165 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDAR 165 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCC
Confidence 0111111111 011111 11 1233344555554 23477899999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
++ +|||||++|..+..+.+++.+++.+.+|..
T Consensus 166 ll--IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ 197 (500)
T COG1129 166 VL--ILDEPTAALTVKETERLFDLIRRLKAQGVA 197 (500)
T ss_pred EE--EEcCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 99 999999999999999999999998877754
No 173
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.3e-29 Score=197.39 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=112.8
Q ss_pred ccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCccccc---ccc
Q 029613 4 VGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLRH---GLN 74 (190)
Q Consensus 4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~~---~~~ 74 (190)
.+.++|++|.|. +..+++++||++++|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++.. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 467899999995 45799999999999999999999999999999999998732 789999999987642 122
Q ss_pred cccCCChhh--------HHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 75 KNLGFSAED--------RTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 75 ~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~ 145 (190)
..++|.+++ ..+++... ........+..+|+||+|| .+||+++.+|+++ +|||||++||+..
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~-------~~~~~~~~~~~LS~Ge~qrl~laral~~~p~ll--llDEPt~~LD~~~ 153 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFA-------LRCKGNEFVRGISGGERKRVSIAEALVSRASVL--CWDNSTRGLDSST 153 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhh-------hhhccccchhhCCHHHHHHHHHHHHHhhCCCEE--EEcCCCccCCHHH
Confidence 234454443 12222110 0111334467899999999 6999999999999 9999999999999
Q ss_pred hHHHHHHHHcC
Q 029613 146 PKGLYKLARAG 156 (190)
Q Consensus 146 ~~~~~~~~~~~ 156 (190)
++.+++.+++-
T Consensus 154 ~~~~~~~l~~~ 164 (202)
T cd03233 154 ALEILKCIRTM 164 (202)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 174
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=199.99 Aligned_cols=152 Identities=21% Similarity=0.180 Sum_probs=115.9
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~~------~ 72 (190)
+|++++|+++.|+...+++++||++.+|++++|+|+||||||||+++|+|++.+ + .+|.|.++|.++.. .
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 478999999999888899999999999999999999999999999999998732 3 48999999987631 1
Q ss_pred cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iaral 123 (190)
.+..++|.+++ ..+++... ..+..++...++. ..+..+|+||+|| .+||++
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral 170 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL 170 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 12233443332 22222110 1122233344431 2366799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||...+..+.+.+++-
T Consensus 171 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 201 (259)
T PRK14274 171 ATNPDVL--LMDEPTSALDPVSTRKIEELILKL 201 (259)
T ss_pred hcCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999874
No 175
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=3.7e-29 Score=225.96 Aligned_cols=148 Identities=23% Similarity=0.257 Sum_probs=117.9
Q ss_pred cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|+.. .+++|+|+++++||.++|+|+||||||||+|+|.|++ .|..|.|.+||.++.. .++..++
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEeHHhcCHHHHHhhee
Confidence 7899999999765 6999999999999999999999999999999999977 8899999999998754 4566677
Q ss_pred CChhh-------HHHHHH------------HHHHHH---HHHHH--cCc----ceeecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIR------------RVGEVA---KLFAD--AGL----ICIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~------------~~~~~~---~~~~~--~~~----~~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
+.+++ ..+++. ...+.+ +.... .|. .+....|||||||| ++||+++.+|++
T Consensus 551 ~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I 630 (709)
T COG2274 551 YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630 (709)
T ss_pred EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence 77765 223221 111111 11111 111 12356799999999 799999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+ +||||||+||....+.+++.+.+
T Consensus 631 L--lLDEaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 631 L--LLDEATSALDPETEAIILQNLLQ 654 (709)
T ss_pred E--EEeCcccccCHhHHHHHHHHHHH
Confidence 9 99999999999999999988876
No 176
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=6.5e-29 Score=201.26 Aligned_cols=150 Identities=18% Similarity=0.218 Sum_probs=115.4
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFS 80 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~ 80 (190)
++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....++|.
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL-RPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 57899999999889999999999999999999999999999999999977 7889999999976532 111123333
Q ss_pred hhh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 81 AED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 81 ~~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
+++ ..+++.. ...+...+...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll- 159 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLL- 159 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE-
Confidence 222 1122211 012233344444432 367799999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||...++.+.+.+++..
T Consensus 160 -llDEPt~~LD~~~~~~l~~~l~~~~ 184 (256)
T TIGR03873 160 -LLDEPTNHLDVRAQLETLALVRELA 184 (256)
T ss_pred -EEcCccccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988653
No 177
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.96 E-value=8.3e-29 Score=201.71 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=115.3
Q ss_pred ccccCcceeccC---------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--
Q 029613 4 VGNSTNIFWQES---------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~---------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-- 72 (190)
|++++|+++.|+ .+.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEccccCH
Confidence 688999999995 367999999999999999999999999999999999977 78899999999765321
Q ss_pred -----cccccCCChhhH----------HHHHHH-------------HHHHHHHHHHcCcc-----eeecccCccHHHH-H
Q 029613 73 -----LNKNLGFSAEDR----------TENIRR-------------VGEVAKLFADAGLI-----CIASLISPYRKDR-D 118 (190)
Q Consensus 73 -----~~~~i~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~ 118 (190)
.+..++|.+++. .+++.. -..+..++...++. ..+..+|+||+|| .
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 122233333321 111100 01223345555552 2367799999999 6
Q ss_pred HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+||+++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 161 laral~~~p~il--lLDEPt~~LD~~~~~~l~~~l~~~ 196 (265)
T TIGR02769 161 IARALAVKPKLI--VLDEAVSNLDMVLQAVILELLRKL 196 (265)
T ss_pred HHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999888764
No 178
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2.3e-28 Score=185.32 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=109.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~ 81 (190)
|+.++++.|+|+..+. .+++.+..||+++|+||||||||||+++|+|.. .|.+|.|+++|.+.... ...-+++..
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEEEcCeecCcCCcccCChhhhh
Confidence 4788999999985543 678899999999999999999999999999977 88999999999876431 111112222
Q ss_pred hh-----------------------HHHHHHHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 82 ED-----------------------RTENIRRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 82 ~~-----------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
++ ..+...++.. .....|+. ..+..|||||||| ++||+++++.+++ +
T Consensus 78 QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~---aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil--L 152 (231)
T COG3840 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEA---AAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL--L 152 (231)
T ss_pred hccccchhhhhhhhhcccCCcccccCHHHHHHHHH---HHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE--E
Confidence 21 1222233333 33344443 4588999999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHc
Q 029613 134 MNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~ 155 (190)
|||||++||+..+....+.+.+
T Consensus 153 LDEPFsALdP~LR~eMl~Lv~~ 174 (231)
T COG3840 153 LDEPFSALDPALRAEMLALVSQ 174 (231)
T ss_pred ecCchhhcCHHHHHHHHHHHHH
Confidence 9999999999999877766654
No 179
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.7e-29 Score=203.38 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=116.5
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~ 72 (190)
++++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++.. .
T Consensus 38 ~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 117 (285)
T PRK14254 38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA 117 (285)
T ss_pred ceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHh
Confidence 368999999999888899999999999999999999999999999999998742 578999999976531 1
Q ss_pred cccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhCC
Q 029613 73 LNKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAMLP 125 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall~ 125 (190)
.+..++|.+++ ..+++... ..+..++...++ ...+..||+||+|| .+||+++.
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~ 197 (285)
T PRK14254 118 LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP 197 (285)
T ss_pred hhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 11223332222 22222210 122333444443 12367899999999 69999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|+++ +|||||++||...++.+++.+++.
T Consensus 198 ~p~lL--LLDEPts~LD~~~~~~l~~~L~~~ 226 (285)
T PRK14254 198 DPEVI--LMDEPASALDPVATSKIEDLIEEL 226 (285)
T ss_pred CCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999875
No 180
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.9e-29 Score=208.25 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=116.3
Q ss_pred ccccCcceeccCcc-----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc--------
Q 029613 4 VGNSTNIFWQESPI-----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR-------- 70 (190)
Q Consensus 4 ~l~~~~l~~~~~~~-----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~-------- 70 (190)
+|+++|++++|++. .+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEeceecccccccccc
Confidence 48899999999743 5999999999999999999999999999999999987 778999999875431
Q ss_pred --------------------cccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-e---
Q 029613 71 --------------------HGLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-C--- 105 (190)
Q Consensus 71 --------------------~~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-~--- 105 (190)
...+..++|.+++ ..+++.. ...+...+...++. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 0112234444432 1222211 11234455555653 2
Q ss_pred -eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 106 -IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 106 -~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
.+..||+||+|| .+|++++.+|+++ +|||||++||+..++.+++.+++-+
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lL--lLDEPt~~LD~~~~~~l~~~l~~l~ 212 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFL--VFDEPTAGLDPQGVKEILEIFDNLN 212 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEE--EEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 377899999999 6999999999999 9999999999999999999887643
No 181
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=4e-29 Score=186.38 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=102.6
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhH
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDR 84 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~ 84 (190)
++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.. .++|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~~~-------~i~~~~~-- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGSTV-------KIGYFEQ-- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCeE-------EEEEEcc--
Confidence 46789999998778999999999999999999999999999999999977 7889999998841 1233332
Q ss_pred HHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 85 TENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|+|++|| .+||+++.+|+++ +||||+++||...+..+.+.+++.
T Consensus 71 -------------------------lS~G~~~rv~laral~~~p~il--llDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 71 -------------------------LSGGEKMRLALAKLLLENPNLL--LLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred -------------------------CCHHHHHHHHHHHHHhcCCCEE--EEeCCccCCCHHHHHHHHHHHHHc
Confidence 89999999 6999999999999 999999999999999999999864
No 182
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.95 E-value=5.2e-29 Score=208.81 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=116.2
Q ss_pred cccccCcceeccCc-------------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 3 TVGNSTNIFWQESP-------------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 3 ~~l~~~~l~~~~~~-------------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
++|+++|++++|+. ..+++++||++++||+++|+|+||||||||+++|+|++ ++.+|.|.++|.++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~-~p~~G~I~~~G~~i 85 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-KATDGEVAWLGKDL 85 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCcEEEECCEEC
Confidence 47899999999952 46899999999999999999999999999999999987 77899999999876
Q ss_pred cc-------ccccccCCChhh----------HHHHHHH--------------HHHHHHHHHHcCcc-----eeecccCcc
Q 029613 70 RH-------GLNKNLGFSAED----------RTENIRR--------------VGEVAKLFADAGLI-----CIASLISPY 113 (190)
Q Consensus 70 ~~-------~~~~~i~~~~~~----------~~~~~~~--------------~~~~~~~~~~~~~~-----~~~~~lS~g 113 (190)
.. ..+..++|.+++ ..+++.. ...+..++...++. ..+..||+|
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 32 112233433332 1111110 01123344555552 347889999
Q ss_pred HHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 114 RKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 114 ~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+|| .|||+++.+|+++ ++||||++||...+..+.+.+++.
T Consensus 166 ~~QRv~iArAL~~~P~ll--ilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 166 QCQRIGIARALILEPKLI--ICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred HHHHHHHHHHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999 5999999999999 999999999999999998888763
No 183
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.95 E-value=6.9e-29 Score=200.97 Aligned_cols=152 Identities=20% Similarity=0.151 Sum_probs=115.8
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC----CCcEEEEcCcccccc--cc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR----GKLSYILDGDNLRHG--LN 74 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~----~~g~i~~~g~~~~~~--~~ 74 (190)
|..+++++|++++| +..+++++||++.+|++++|+|+||||||||+++|+|++ ++ .+|.|.++|.++... ..
T Consensus 1 ~~~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~~~~~G~i~~~g~~i~~~~~~~ 78 (254)
T PRK10418 1 MPQQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL-PAGVRQTAGRVLLDGKPVAPCALRG 78 (254)
T ss_pred CCcEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCcCCEEEECCeecccccccc
Confidence 55578999999999 578999999999999999999999999999999999987 56 789999999765311 01
Q ss_pred cccCCChhhH----------HHHHHH----------HHHHHHHHHHcCcce-------eecccCccHHHH-HHHHHhCCC
Q 029613 75 KNLGFSAEDR----------TENIRR----------VGEVAKLFADAGLIC-------IASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 75 ~~i~~~~~~~----------~~~~~~----------~~~~~~~~~~~~~~~-------~~~~lS~g~kqr-~iarall~~ 126 (190)
..++|.+++. .++... ...+...+...++.. .+..+|+||+|| .+||+++.+
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 158 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence 1223322221 011100 012334455555432 367799999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||...++.+++.+++.
T Consensus 159 p~lL--lLDEPt~~LD~~~~~~l~~~L~~~ 186 (254)
T PRK10418 159 APFI--IADEPTTDLDVVAQARILDLLESI 186 (254)
T ss_pred CCEE--EEeCCCcccCHHHHHHHHHHHHHH
Confidence 9999 999999999999999999888764
No 184
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.95 E-value=1.2e-28 Score=187.84 Aligned_cols=135 Identities=18% Similarity=0.177 Sum_probs=105.1
Q ss_pred cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613 5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83 (190)
Q Consensus 5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~ 83 (190)
++++|++++|+ ..++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.+++.. .++|.+++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~-------~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGRIGMPEGE-------DLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCCc-------eEEEECCC
Confidence 46789999995 467999999999999999999999999999999999977 7789999998742 12233322
Q ss_pred HHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 84 RTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
..-.-. .+.+.+.. . .+..+|+||+|| .+||+++.+|+++ +|||||++||...++.+.+.+++.
T Consensus 73 ~~~~~~---tv~~nl~~-~---~~~~LS~G~~~rv~laral~~~p~~l--llDEPt~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 73 PYLPLG---TLREQLIY-P---WDDVLSGGEQQRLAFARLLLHKPKFV--FLDEATSALDEESEDRLYQLLKEL 137 (166)
T ss_pred Cccccc---cHHHHhhc-c---CCCCCCHHHHHHHHHHHHHHcCCCEE--EEECCccccCHHHHHHHHHHHHHh
Confidence 110000 00000000 0 356799999999 6999999999999 999999999999999999999864
No 185
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.1e-28 Score=194.45 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=111.2
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCChh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSAE 82 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~~ 82 (190)
++++|++++|++.. .++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... .+..++|.++
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 46889999998654 3999999999999999999999999999999987 78899999999765321 1112222222
Q ss_pred h--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 83 D--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 83 ~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+ ..+++.. -..+..++...++. ..+..+|+||+|| .+||+++.+|+++ +||||
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ll--llDEP 155 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVL--LLDEP 155 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence 1 1222210 11233445555553 2367899999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHHcC
Q 029613 138 LELCEARDPKGLYKLARAG 156 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~~~ 156 (190)
|++||...++.+++.+++-
T Consensus 156 ~~~LD~~~~~~l~~~l~~~ 174 (211)
T cd03298 156 FAALDPALRAEMLDLVLDL 174 (211)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999988864
No 186
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-28 Score=198.76 Aligned_cols=155 Identities=18% Similarity=0.203 Sum_probs=115.3
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCccccc-----
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLRH----- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~~----- 71 (190)
|.-|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+ + .+|.|.++|.++..
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 1 MTLLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred CeEEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 55578999999999888899999999999999999999999999999999998732 2 37999999976532
Q ss_pred -ccccccCCChhh--------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHH
Q 029613 72 -GLNKNLGFSAED--------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DAC 120 (190)
Q Consensus 72 -~~~~~i~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~ia 120 (190)
..+..++|.+++ ..+++... ......+...++ ...+..+|+||+|| .+|
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 112223333322 12222110 001111222221 12367799999999 699
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
|+++.+|+++ +|||||++||...++.+.+.+++..
T Consensus 161 ral~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14272 161 RALAVEPEIL--LMDEPTSALDPASTARIEDLMTDLK 195 (252)
T ss_pred HHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999999999999988753
No 187
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=7.2e-29 Score=193.48 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=112.8
Q ss_pred ccccCcceeccCc------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCccccc-cccc
Q 029613 4 VGNSTNIFWQESP------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRH-GLNK 75 (190)
Q Consensus 4 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~-~~~~ 75 (190)
.++++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++. ++.+|+|.++|.++.. ....
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 3678999999975 679999999999999999999999999999999999662 5788999999987643 1223
Q ss_pred ccCCChhhHHHHH-HHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613 76 NLGFSAEDRTENI-RRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA 153 (190)
Q Consensus 76 ~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~ 153 (190)
.++|.+++..-.. ..+.+........ ..+|+||+|| .+||+++.+|+++ +|||||++||...++.+++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~------~~LS~G~~qrv~laral~~~p~il--llDEP~~~LD~~~~~~l~~~l 154 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL------RGLSGGERKRVSIALELVSNPSLL--FLDEPTSGLDSSSALQVMSLL 154 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh------ccCCHHHHHHHHHHHHHHcCCCEE--EEeCCCcCCCHHHHHHHHHHH
Confidence 3444444311000 0011100000000 1799999999 6999999999999 999999999999999999999
Q ss_pred HcCCCCCcc
Q 029613 154 RAGKIKGLL 162 (190)
Q Consensus 154 ~~~~~~~~~ 162 (190)
++...+|.+
T Consensus 155 ~~~~~~~~t 163 (194)
T cd03213 155 RRLADTGRT 163 (194)
T ss_pred HHHHhCCCE
Confidence 875433433
No 188
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=198.07 Aligned_cols=153 Identities=20% Similarity=0.177 Sum_probs=114.8
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCccccc-----
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLRH----- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~~----- 71 (190)
|. +++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++.. + .+|+|.++|.++..
T Consensus 1 ~~-~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 1 MG-KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CC-eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 44 57899999999888899999999999999999999999999999999997631 2 58999999977532
Q ss_pred -ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHH
Q 029613 72 -GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACR 121 (190)
Q Consensus 72 -~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iar 121 (190)
..+..++|.+++ ..+++... ..+...+...++ ...+..+|+||+|| ++||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 112223333322 12222110 011222233332 12367799999999 6999
Q ss_pred HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++.+|+++ +|||||++||...++.+.+.+++.
T Consensus 160 al~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14240 160 ALAVEPEVL--LMDEPTSALDPISTLKIEELIQEL 192 (250)
T ss_pred HHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999988865
No 189
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.95 E-value=8.4e-29 Score=196.15 Aligned_cols=149 Identities=24% Similarity=0.278 Sum_probs=111.4
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|+++.|+. +.+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. ..+..++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 578999999975 57999999999999999999999999999999999977 7789999999976531 1112233
Q ss_pred CChhh-------HHHHHHHH------HHHHHHHHHcCcce---------------eecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIRRV------GEVAKLFADAGLIC---------------IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~---------------~~~~lS~g~kqr-~iarall~~~~i 129 (190)
|.+++ ..+++... ..+...+...++.. .+..+|+||+|| .+||+++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 33322 12222100 01112222222211 135799999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||...++.+++.+++-
T Consensus 162 l--llDEPt~~LD~~~~~~l~~~l~~~ 186 (220)
T cd03245 162 L--LLDEPTSAMDMNSEERLKERLRQL 186 (220)
T ss_pred E--EEeCccccCCHHHHHHHHHHHHHh
Confidence 9 999999999999999999999874
No 190
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=1.1e-28 Score=210.21 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=125.0
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNK 75 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~ 75 (190)
|.+.+++++++|.|++..+.+++||++.+|||++|+|+||||||||+++|.|.+ +|++|+|+++|+.+.- ..+.
T Consensus 1 ~~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 1 MEPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred CCceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcceEEECCEEeccCCHHHHHHc
Confidence 456789999999999999999999999999999999999999999999999987 8999999999987632 1122
Q ss_pred ccCCChhh--------HHHH--------------HHH-HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCC
Q 029613 76 NLGFSAED--------RTEN--------------IRR-VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 76 ~i~~~~~~--------~~~~--------------~~~-~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~ 127 (190)
.+++..|. ..|| .+. -..+..+.+..++. ..+..+|-|++|| +|.++|+.++
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 22222221 0111 111 12344444555553 4588999999999 7999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+++ +|||||+.|.+...+.+++.++....+|.+
T Consensus 160 ~iL--ILDEPTaVLTP~E~~~lf~~l~~l~~~G~t 192 (501)
T COG3845 160 RLL--ILDEPTAVLTPQEADELFEILRRLAAEGKT 192 (501)
T ss_pred CEE--EEcCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 999 999999999999999999999886666644
No 191
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.2e-28 Score=193.03 Aligned_cols=154 Identities=17% Similarity=0.141 Sum_probs=119.7
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc-----ccccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR-----HGLNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~-----~~~~~~i 77 (190)
++|+++|++..|+++++|+++|.++++||-.+|+||||||||||+++++|.. ++++|.+.+.|+.+. ..+++.+
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~-~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH-PPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc-CCCCCceeeeeeeccCCcchHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999977 666888777665442 2344555
Q ss_pred CCChhhHHHHH---------------------------HHHHHHHHHHHHcCcce----eecccCccHHHHH-HHHHhCC
Q 029613 78 GFSAEDRTENI---------------------------RRVGEVAKLFADAGLIC----IASLISPYRKDRD-ACRAMLP 125 (190)
Q Consensus 78 ~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~----~~~~lS~g~kqr~-iarall~ 125 (190)
|++..+..... ........++...++.. ....||-||+||. ||||++.
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~ 188 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK 188 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc
Confidence 55544321110 11122334444455443 3667999999995 9999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCC
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIK 159 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~ 159 (190)
+|+++ |||||+++||...++.+++.+.+....
T Consensus 189 ~P~LL--iLDEP~~GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 189 DPELL--ILDEPAQGLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred CCCEE--EecCccccCChHHHHHHHHHHHHHhcC
Confidence 99999 999999999999999999999875443
No 192
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=7.8e-29 Score=207.72 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=115.9
Q ss_pred cccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCcccccc---
Q 029613 3 TVGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRHG--- 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~~--- 72 (190)
++|+++|+++.|. ...+++++||++.+||+++|+|+||||||||+++|+|++ ++. +|.|.++|.++...
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~-~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-AANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCCCCeEEEECCEECCcCCHH
Confidence 4789999999994 357999999999999999999999999999999999987 454 89999999876321
Q ss_pred ----cc-cccCCChhhH----------HHHH----HH---------HHHHHHHHHHcCcc-------eeecccCccHHHH
Q 029613 73 ----LN-KNLGFSAEDR----------TENI----RR---------VGEVAKLFADAGLI-------CIASLISPYRKDR 117 (190)
Q Consensus 73 ----~~-~~i~~~~~~~----------~~~~----~~---------~~~~~~~~~~~~~~-------~~~~~lS~g~kqr 117 (190)
.+ ..++|.+++. .+++ .. ...+..++...++. .++..||+||+||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 11 2344444431 1111 00 11233445555542 2578899999999
Q ss_pred -HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 118 -DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 118 -~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.|||+++.+|+++ ++||||++||...+..+.+.+++.
T Consensus 170 v~IArAL~~~P~ll--ilDEPts~LD~~~~~~i~~lL~~l 207 (330)
T PRK09473 170 VMIAMALLCRPKLL--IADEPTTALDVTVQAQIMTLLNEL 207 (330)
T ss_pred HHHHHHHHcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 5999999999999 999999999999999999888764
No 193
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-28 Score=199.02 Aligned_cols=152 Identities=20% Similarity=0.149 Sum_probs=114.2
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~ 72 (190)
+|++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++.. +.+|.|.++|.++.. .
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 478999999999888899999999999999999999999999999999997632 368999999976521 1
Q ss_pred cccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhCC
Q 029613 73 LNKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAMLP 125 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall~ 125 (190)
.+..++|.+++ ..+++... ......+...++ ...+..+|+||+|| .+||+++.
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 12223333322 22222110 011122233232 12366799999999 69999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|+++ +|||||++||...++.+++.+++-
T Consensus 169 ~p~ll--lLDEPt~~LD~~~~~~l~~~L~~~ 197 (264)
T PRK14243 169 QPEVI--LMDEPCSALDPISTLRIEELMHEL 197 (264)
T ss_pred CCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999 999999999999999999998864
No 194
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.8e-29 Score=204.57 Aligned_cols=150 Identities=19% Similarity=0.131 Sum_probs=114.2
Q ss_pred ccccCcceeccCcc-----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613 4 VGNSTNIFWQESPI-----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~~-----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------- 71 (190)
.++++|++++|++. .+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-ISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccccccccc
Confidence 57899999999764 4999999999999999999999999999999999987 7889999999876521
Q ss_pred --ccccccCCChhh---------HHHHHHHH------------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHH
Q 029613 72 --GLNKNLGFSAED---------RTENIRRV------------GEVAKLFADAGLI-----CIASLISPYRKDR-DACRA 122 (190)
Q Consensus 72 --~~~~~i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iara 122 (190)
..+..++|.+++ ..+++... ..+..++...++. ..+..||+||+|| .+||+
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 112233443332 11222110 1122334444442 2367799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||+..++.+++.+++-
T Consensus 165 l~~~p~lL--lLDEPt~~LD~~~~~~l~~~l~~~ 196 (289)
T PRK13645 165 IAMDGNTL--VLDEPTGGLDPKGEEDFINLFERL 196 (289)
T ss_pred HHhCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999888753
No 195
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-28 Score=197.69 Aligned_cols=152 Identities=20% Similarity=0.150 Sum_probs=115.1
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~------~ 72 (190)
+|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|+.. .+ .+|.|.++|.++.. .
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 47899999999988889999999999999999999999999999999999752 34 48999999976521 1
Q ss_pred cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral 123 (190)
.+..++|.+++ ..+++... ..+...+...++ ...+..+|+||+|| .+||++
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 12233333332 22222210 011122333332 12367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||...++.+++.+++-
T Consensus 164 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14239 164 ATSPKII--LLDEPTSALDPISAGKIEETLLGL 194 (252)
T ss_pred hcCCCEE--EEcCCccccCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999864
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.95 E-value=1.4e-28 Score=195.11 Aligned_cols=150 Identities=21% Similarity=0.215 Sum_probs=115.6
Q ss_pred cccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cc
Q 029613 5 GNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GL 73 (190)
Q Consensus 5 l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~ 73 (190)
++++|+++.|+. +.+++++||++++|++++|+|+||||||||+++|+|.+ ++.+|+|.++|.++.. ..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEhHhcCHhHHHHH
Confidence 578999999974 67999999999999999999999999999999999977 7889999999987632 11
Q ss_pred ccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 74 NKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 74 ~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
+..++|.+++ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 2233333332 1111110 012334445555532 367799999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+++ +||||+++||...++.+++.+++-.
T Consensus 161 ~il--llDEP~~~LD~~~~~~l~~~l~~~~ 188 (220)
T TIGR02982 161 KLV--LADEPTAALDSKSGRDVVELMQKLA 188 (220)
T ss_pred CEE--EEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999987643
No 197
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-28 Score=198.46 Aligned_cols=151 Identities=19% Similarity=0.161 Sum_probs=114.8
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~~ 73 (190)
|++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++.. ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 78999999999888899999999999999999999999999999999998732 378999999976531 11
Q ss_pred ccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhC
Q 029613 74 NKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall 124 (190)
+..++|.+++ ..+++... ..+...+...++. ..+..+|+||+|| .+||+++
T Consensus 83 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 2233333322 12222110 0112223333331 2367799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||...+..+.+.+++-
T Consensus 163 ~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14262 163 VEPEVI--LLDEPTSALDPIATQRIEKLLEEL 192 (250)
T ss_pred CCCCEE--EEeCCccccCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999988864
No 198
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=197.89 Aligned_cols=153 Identities=21% Similarity=0.157 Sum_probs=114.7
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH----- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~----- 71 (190)
|+ +++++|+++.|+.+.+++++||++++|++++|+|+||||||||+++|+|++.+ +.+|.+.++|.++..
T Consensus 1 ~~-~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 1 MN-KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred CC-eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 53 78999999999988899999999999999999999999999999999998732 258999999876521
Q ss_pred ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHH
Q 029613 72 GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRA 122 (190)
Q Consensus 72 ~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iara 122 (190)
..+..++|.+++ ..+++... ..+...+...++ ...+..+|+||+|| .+||+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 112223333322 12222110 011122223332 12356799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||...++.+++.+++.
T Consensus 160 l~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~ 191 (249)
T PRK14253 160 IAMEPDVI--LMDEPTSALDPIATHKIEELMEEL 191 (249)
T ss_pred HHcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999988874
No 199
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.95 E-value=8.9e-29 Score=192.05 Aligned_cols=140 Identities=18% Similarity=0.235 Sum_probs=105.8
Q ss_pred cCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------ccccccCCChhh----
Q 029613 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKNLGFSAED---- 83 (190)
Q Consensus 14 ~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~i~~~~~~---- 83 (190)
|+.+.+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|.+++
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 35667999999999999999999999999999999999977 7889999999976531 111223333332
Q ss_pred -----HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613 84 -----RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC 141 (190)
Q Consensus 84 -----~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l 141 (190)
..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++|
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llDEPt~~L 158 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVL--LLDEPTAGL 158 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCcccC
Confidence 1122211 011233444445432 367899999999 6999999999999 999999999
Q ss_pred hhcChHHHHHHHHcC
Q 029613 142 EARDPKGLYKLARAG 156 (190)
Q Consensus 142 d~~~~~~~~~~~~~~ 156 (190)
|...++.+++.+++-
T Consensus 159 D~~~~~~~~~~l~~~ 173 (190)
T TIGR01166 159 DPAGREQMLAILRRL 173 (190)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
No 200
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.95 E-value=2.3e-28 Score=193.01 Aligned_cols=148 Identities=15% Similarity=0.157 Sum_probs=112.5
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAE 82 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~ 82 (190)
++++|+++.|+. .+.++||++.+|++++|+||||||||||+++|+|++ ++.+|+|.++|.++.. ..+..++|.++
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccCChhccceEEEec
Confidence 468999999974 568999999999999999999999999999999977 7889999999976532 11122333222
Q ss_pred h--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 83 D--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 83 ~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+ ..+++.. -..+..++...++. ..+..+|+||+|| .+||+++.+|+++ +||||
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llDEP 155 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPIL--LLDEP 155 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence 2 1222211 01223344555553 2367899999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHHcCC
Q 029613 138 LELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~~~~ 157 (190)
|++||...++.+++.+++..
T Consensus 156 t~~LD~~~~~~~~~~l~~~~ 175 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLC 175 (213)
T ss_pred CccCCHHHHHHHHHHHHHHH
Confidence 99999999999999888643
No 201
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-28 Score=216.58 Aligned_cols=148 Identities=22% Similarity=0.253 Sum_probs=113.7
Q ss_pred ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
.++++||+|+|.. .++++|+||+++|||+++|+||||+||||++.+|..++ +|.+|.|.+||.++.. .++..
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY-~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY-DPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeEEECCeehhhcCHHHHHHH
Confidence 3789999999965 46999999999999999999999999999999999966 8999999999998753 34555
Q ss_pred cCCChhh-------HHHHHH------------HHHHHHH---HHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCC
Q 029613 77 LGFSAED-------RTENIR------------RVGEVAK---LFADA--GL----ICIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 77 i~~~~~~-------~~~~~~------------~~~~~~~---~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~ 127 (190)
++++.|+ ..+|+. ..++.+. ....+ +. -+-...+||||||| +|||||+++|
T Consensus 544 Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 544 IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred eeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence 5665554 223322 1122211 11111 11 12366799999999 7999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLAR 154 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~ 154 (190)
.++ ||||.||+||......+.+.+.
T Consensus 624 ~VL--ILDEATSALDaeSE~lVq~aL~ 648 (716)
T KOG0058|consen 624 RVL--ILDEATSALDAESEYLVQEALD 648 (716)
T ss_pred CEE--EEechhhhcchhhHHHHHHHHH
Confidence 999 9999999999998766666654
No 202
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.6e-28 Score=195.12 Aligned_cols=149 Identities=19% Similarity=0.138 Sum_probs=115.0
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCChh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSAE 82 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~~ 82 (190)
+.++|++++|+++.+++++||++.+|++++|+|+||||||||+++|+|.+ ++..|.|.++|.++... .+..++|.++
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE-TPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcceEEEec
Confidence 46889999998888999999999999999999999999999999999987 78899999999765321 1122333332
Q ss_pred h--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 83 D--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 83 ~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +||||
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll--llDEP 157 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL--LLDEP 157 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence 2 12222110 12223344445532 367799999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHHcC
Q 029613 138 LELCEARDPKGLYKLARAG 156 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~~~ 156 (190)
|++||...++.+++.+++-
T Consensus 158 ~~gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 158 LGALDLKLRKDMQLELKRL 176 (232)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 203
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=1.7e-28 Score=207.63 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=112.2
Q ss_pred eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----c----ccccCCChhh
Q 029613 12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----L----NKNLGFSAED 83 (190)
Q Consensus 12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~----~~~i~~~~~~ 83 (190)
|+|+++.+++++||++++||+++|+||||||||||+++|+|++ ++.+|.|+++|.++... + +..++|.+++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 5688889999999999999999999999999999999999977 78999999999876431 1 2334444432
Q ss_pred --------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 84 --------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 84 --------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
..+++.. ...+..++...++.. .+..||+||+|| .+|||++.+|+++ +|||||
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL--LlDEP~ 157 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL--LMDEAF 157 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCc
Confidence 2233221 122344555555543 477899999999 5999999999999 999999
Q ss_pred hhhhhcChHHHHHHHHcC
Q 029613 139 ELCEARDPKGLYKLARAG 156 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~~ 156 (190)
++||+..++.+++.+.+.
T Consensus 158 saLD~~~r~~l~~~l~~l 175 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKL 175 (363)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999888764
No 204
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.95 E-value=2.1e-28 Score=199.73 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=115.9
Q ss_pred CCcccccCcceeccC---------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 1 MATVGNSTNIFWQES---------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~---------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
|. ||+++|+++.|+ ++.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus 1 ~~-~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~sG~i~~~g~~~~~ 78 (268)
T PRK10419 1 MT-LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-SPSQGNVSWRGEPLAK 78 (268)
T ss_pred Cc-eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEeccc
Confidence 53 789999999997 468999999999999999999999999999999999977 7889999999976532
Q ss_pred -------ccccccCCChhhH----------HHHHH-------------HHHHHHHHHHHcCcc-----eeecccCccHHH
Q 029613 72 -------GLNKNLGFSAEDR----------TENIR-------------RVGEVAKLFADAGLI-----CIASLISPYRKD 116 (190)
Q Consensus 72 -------~~~~~i~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kq 116 (190)
..+..++|.+++. .+++. ....+..++...++. ..+..+|+||+|
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~q 158 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQ 158 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHH
Confidence 1112233332221 11110 001233444455542 236679999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
| .+||+++.+|+++ +|||||++||...++.+++.+++.
T Consensus 159 rl~laral~~~p~ll--lLDEPt~~LD~~~~~~~~~~l~~~ 197 (268)
T PRK10419 159 RVCLARALAVEPKLL--ILDEAVSNLDLVLQAGVIRLLKKL 197 (268)
T ss_pred HHHHHHHHhcCCCEE--EEeCCCcccCHHHHHHHHHHHHHH
Confidence 9 6999999999999 999999999999999998888764
No 205
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.4e-28 Score=195.91 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=111.7
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|++ ..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-DPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 578999999975 57999999999999999999999999999999999987 7889999999976532 11222344
Q ss_pred Chhh-------HHHHHHHH------HHHH---------HHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAED-------RTENIRRV------GEVA---------KLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~-------~~~~~~~~------~~~~---------~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+++ ..+++... ..+. ..+... ++ ...+..+|+||+|| .+||+++.+|+++
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 3332 11111100 0111 111111 11 11256799999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||...++.+++.+++-.
T Consensus 162 --llDEP~~~LD~~~~~~l~~~l~~~~ 186 (229)
T cd03254 162 --ILDEATSNIDTETEKLIQEALEKLM 186 (229)
T ss_pred --EEeCccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998753
No 206
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-28 Score=207.22 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=113.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------cccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNK 75 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~ 75 (190)
||++ |++++|+++.+ ++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ....
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-RPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccchhhC
Confidence 4677 99999987543 899999999999999999999999999999977 7889999999976532 1122
Q ss_pred ccCCChhh--------HHHHHHH------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 76 NLGFSAED--------RTENIRR------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
.++|.+++ ..+++.. -..+..++...++.. .+..||+||+|| .+||+++.+|+++ +|||
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll--LLDE 154 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL--LMDE 154 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE--EEcC
Confidence 34444333 2233221 112344555555543 377899999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHcC
Q 029613 137 PLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~~ 156 (190)
||++||...++.+.+.+++-
T Consensus 155 Pts~LD~~~~~~l~~~L~~l 174 (352)
T PRK11144 155 PLASLDLPRKRELLPYLERL 174 (352)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999988888753
No 207
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.9e-28 Score=200.29 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=115.0
Q ss_pred ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC----CCcEEEEcCcccccc---
Q 029613 4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR----GKLSYILDGDNLRHG--- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~----~~g~i~~~g~~~~~~--- 72 (190)
+|+++|++.+|.. ..+++|+||++++||+++|+|+|||||||++++|.|+++.+ .+|+|.|+|+++..-
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 4789999998843 57999999999999999999999999999999999998522 357899999875321
Q ss_pred -----cccccCCChhh--------------HHHHHHH----------HHHHHHHHHHcCcc-------eeecccCccHHH
Q 029613 73 -----LNKNLGFSAED--------------RTENIRR----------VGEVAKLFADAGLI-------CIASLISPYRKD 116 (190)
Q Consensus 73 -----~~~~i~~~~~~--------------~~~~~~~----------~~~~~~~~~~~~~~-------~~~~~lS~g~kq 116 (190)
....+++.+|+ ..+.+.. ......+++..++. .++.++||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 01123344433 1111111 12344556665554 358999999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
| .||.|++.+|+++ |.||||++||...+.++.+.+++
T Consensus 161 RV~IAmala~~P~Ll--IADEPTTALDvt~QaqIl~Ll~~ 198 (316)
T COG0444 161 RVMIAMALALNPKLL--IADEPTTALDVTVQAQILDLLKE 198 (316)
T ss_pred HHHHHHHHhCCCCEE--EeCCCcchhhHHHHHHHHHHHHH
Confidence 9 5999999999999 99999999999999998888876
No 208
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-28 Score=200.45 Aligned_cols=150 Identities=18% Similarity=0.170 Sum_probs=113.6
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC--------CcEEEEcCccccc----
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG--------KLSYILDGDNLRH---- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~--------~g~i~~~g~~~~~---- 71 (190)
||+++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++. +|.|.++|.++..
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~-~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL-TGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCcccccccCCceEEEECCEEcccCCHH
Confidence 478999999999889999999999999999999999999999999999987 555 8999999976532
Q ss_pred ccccccCCChhh--------HHHHHHH----------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHH
Q 029613 72 GLNKNLGFSAED--------RTENIRR----------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRA 122 (190)
Q Consensus 72 ~~~~~i~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iara 122 (190)
.....++|.+++ ..+++.. -..+...+...++. ..+..||+||+|| .+||+
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 011112222211 1222211 01122334444443 2367899999999 69999
Q ss_pred hC---------CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 ML---------PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll---------~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ .+|+++ +|||||++||+..++.+++.+++-
T Consensus 160 l~~~~~~~~~~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 200 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYL--LLDEPTAALDLAHQHRLLDTVRRL 200 (272)
T ss_pred HhccccccccCCCCCEE--EEcCccccCCHHHHHHHHHHHHHH
Confidence 99 499999 999999999999999999988864
No 209
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=1.8e-28 Score=197.53 Aligned_cols=151 Identities=14% Similarity=0.018 Sum_probs=111.6
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccc-----ccccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHG-----LNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~-----~~~~i 77 (190)
|++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++. ++.+|.|.++|.++... .+..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 4789999999988889999999999999999999999999999999999752 57899999999765321 11123
Q ss_pred CCChhhH--------HHHHHH------------------H-HHHHHHHHHcCcc-----eeec-ccCccHHHH-HHHHHh
Q 029613 78 GFSAEDR--------TENIRR------------------V-GEVAKLFADAGLI-----CIAS-LISPYRKDR-DACRAM 123 (190)
Q Consensus 78 ~~~~~~~--------~~~~~~------------------~-~~~~~~~~~~~~~-----~~~~-~lS~g~kqr-~iaral 123 (190)
+|.+++. ..+... . ..+...+...++. ..+. .+|+||+|| .+||++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 3322221 000000 0 0111222222331 1132 699999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||...++.+.+.+++.
T Consensus 161 ~~~p~il--lLDEPt~~LD~~~~~~l~~~l~~l 191 (248)
T PRK09580 161 VLEPELC--ILDESDSGLDIDALKIVADGVNSL 191 (248)
T ss_pred HcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999887754
No 210
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-28 Score=202.20 Aligned_cols=151 Identities=17% Similarity=0.229 Sum_probs=115.9
Q ss_pred cccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC---cEEEEcCccccc----cc
Q 029613 3 TVGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK---LSYILDGDNLRH----GL 73 (190)
Q Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~---g~i~~~g~~~~~----~~ 73 (190)
.|++++|++++|++ .++++++||++.+|++++|+|+||||||||+++|+|++ ++.+ |.|.++|.++.. ..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~-~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL-LPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-CCCCCCCcEEEECCEECCcCCHHHH
Confidence 47899999999964 46999999999999999999999999999999999987 5554 899999987642 11
Q ss_pred ccccCCChhh---------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 74 NKNLGFSAED---------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 74 ~~~i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
...++|.+++ ..+++... ..+..++..+++.. .+..+|+||+|| .+||+++.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2234443332 11222110 11233444555532 367899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+.+.+++-
T Consensus 163 ~ll--llDEPt~gLD~~~~~~l~~~l~~l 189 (282)
T PRK13640 163 KII--ILDESTSMLDPAGKEQILKLIRKL 189 (282)
T ss_pred CEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999988763
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.95 E-value=2.4e-28 Score=195.98 Aligned_cols=150 Identities=22% Similarity=0.238 Sum_probs=115.8
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAE 82 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~ 82 (190)
++++|++++|++.++++++||++.+|++++|+|+||||||||+++|+|.+ ++..|++.++|.++.. .....++|.++
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 46889999999889999999999999999999999999999999999977 7889999999877532 11122333332
Q ss_pred h--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 83 D--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 83 ~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+ ..+++.. ...+..++...++.. .+..+|+||+|| .+||+++.+|+++ +||||
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll--llDEP 157 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVL--LLDEP 157 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence 2 1222211 112234445555532 256799999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHHcCC
Q 029613 138 LELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~~~~ 157 (190)
+++||...++.+++.+++-.
T Consensus 158 ~~~LD~~~~~~~~~~l~~~~ 177 (237)
T TIGR00968 158 FGALDAKVRKELRSWLRKLH 177 (237)
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 99999999999999998643
No 212
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.95 E-value=1.5e-28 Score=195.33 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=112.6
Q ss_pred ccccCcceeccCc-------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC--c--cccc-
Q 029613 4 VGNSTNIFWQESP-------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG--D--NLRH- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~-------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g--~--~~~~- 71 (190)
|++++|++++|++ ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.+++ . ++..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-LPDSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEEecCCCccchhhc
Confidence 4789999999963 46999999999999999999999999999999999987 67889999983 2 3211
Q ss_pred c------c-ccccCCChhhH--------HHHHHH------------HHHHHHHHHHcCcce-----eecccCccHHHH-H
Q 029613 72 G------L-NKNLGFSAEDR--------TENIRR------------VGEVAKLFADAGLIC-----IASLISPYRKDR-D 118 (190)
Q Consensus 72 ~------~-~~~i~~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~ 118 (190)
. . ...++|.+++. .+++.. ...+..++...++.. .+..+|+||+|| .
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 0 0 11233333321 111110 012233444444422 367799999999 6
Q ss_pred HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+||+++.+|+++ +|||||++||+..++.+.+.+++-+
T Consensus 160 laral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~~ 196 (224)
T TIGR02324 160 IARGFIADYPIL--LLDEPTASLDAANRQVVVELIAEAK 196 (224)
T ss_pred HHHHHhcCCCEE--EEcCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999988643
No 213
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.95 E-value=2e-28 Score=196.06 Aligned_cols=150 Identities=20% Similarity=0.224 Sum_probs=111.1
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|+. ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++.. ..+..++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY-VPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 467899999963 57999999999999999999999999999999999987 7889999999976532 1112233
Q ss_pred CChhh-------HHHHHHH---------HHH------HHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIRR---------VGE------VAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
|.+++ ..+++.. +.. +...+... ++ ...+..||+||+|| .+||+++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 33322 1111110 000 01111111 11 12357799999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+ +|||||++||+..++.+++.+++-.
T Consensus 160 l--llDEP~~~LD~~~~~~l~~~l~~~~ 185 (237)
T cd03252 160 L--IFDEATSALDYESEHAIMRNMHDIC 185 (237)
T ss_pred E--EEeCCcccCCHHHHHHHHHHHHHhc
Confidence 9 9999999999999999999998754
No 214
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.4e-28 Score=195.26 Aligned_cols=150 Identities=21% Similarity=0.242 Sum_probs=111.7
Q ss_pred cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|++. .+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-DVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-cCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4688999999765 7999999999999999999999999999999999987 7889999999976532 1112233
Q ss_pred CChhh-------HHHHHHH---------HH------HHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIRR---------VG------EVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~---------~~------~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
|.+++ ..+++.. +. .+...+... ++. ..+..+|+||+|| .+||+++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 32222 1121110 00 011122221 221 2356799999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+ +|||||++||...++.+++.+++-.
T Consensus 160 l--lLDEP~~~LD~~~~~~l~~~l~~~~ 185 (234)
T cd03251 160 L--ILDEATSALDTESERLVQAALERLM 185 (234)
T ss_pred E--EEeCccccCCHHHHHHHHHHHHHhc
Confidence 9 9999999999999999999998753
No 215
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=2.3e-28 Score=194.48 Aligned_cols=151 Identities=18% Similarity=0.209 Sum_probs=113.5
Q ss_pred cccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccc
Q 029613 3 TVGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNK 75 (190)
Q Consensus 3 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~ 75 (190)
.+++++|++++|++ ..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+.
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCCchHHcCHHHHHh
Confidence 47899999999974 46999999999999999999999999999999999987 7889999999976532 1111
Q ss_pred ccCCChhh-------HHHHHHH---------HH------HHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCC
Q 029613 76 NLGFSAED-------RTENIRR---------VG------EVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 76 ~i~~~~~~-------~~~~~~~---------~~------~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~ 126 (190)
.++|.+++ ..+++.. +. .+..++..+ ++. ..+..||+||+|| .+||+++.+
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 22332222 1111110 00 011222222 332 2367799999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||+..++.+++.+++-
T Consensus 169 p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 196 (226)
T cd03248 169 PQVL--ILDEATSALDAESEQQVQQALYDW 196 (226)
T ss_pred CCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999864
No 216
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.4e-28 Score=195.26 Aligned_cols=148 Identities=19% Similarity=0.253 Sum_probs=112.0
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~ 81 (190)
|++++|++++|+... .++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... ....++|.+
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCeecCcCChhhccEEEEe
Confidence 478999999998644 3999999999999999999999999999999977 78899999999765321 011122222
Q ss_pred hh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 82 ED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
++ ..+++.. -..+..++...++. ..+..+|+||+|| .+||+++.+|+++ +|||
T Consensus 78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--lLDE 155 (232)
T PRK10771 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL--LLDE 155 (232)
T ss_pred cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEeC
Confidence 21 1222211 01133344445543 2367899999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHcC
Q 029613 137 PLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~~ 156 (190)
||++||...++.+++.+++.
T Consensus 156 P~~gLD~~~~~~~~~~l~~~ 175 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQV 175 (232)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 217
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-28 Score=197.46 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=114.7
Q ss_pred CcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCccccc------
Q 029613 2 ATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRH------ 71 (190)
Q Consensus 2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~------ 71 (190)
.+|++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++. .+ .+|+|.++|.++..
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 468999999999998899999999999999999999999999999999999763 12 37999999977532
Q ss_pred ccccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHH
Q 029613 72 GLNKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DACRA 122 (190)
Q Consensus 72 ~~~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iara 122 (190)
..+..++|.+++ ..+++.. . ..+...+...++ ...+..+|+||+|| .+||+
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIART 163 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHH
Confidence 112223333322 1111110 0 112222333332 12366799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||...++.+.+.+++.
T Consensus 164 l~~~p~ll--lLDEP~~gLD~~~~~~l~~~l~~~ 195 (253)
T PRK14261 164 LAVNPEVI--LMDEPCSALDPIATAKIEDLIEDL 195 (253)
T ss_pred HhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999988864
No 218
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=1.3e-28 Score=213.98 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=114.7
Q ss_pred cccccCcceeccCc-----------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 3 TVGNSTNIFWQESP-----------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 3 ~~l~~~~l~~~~~~-----------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
++++++|+++.|.. +.+++++||++.+||+++|+|+||||||||+|+|+|++ +|.+|.|.++|.++..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL-PPSSGSIIFDGQDLDL 357 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEEeCccccc
Confidence 56889999999973 46899999999999999999999999999999999987 7799999999976211
Q ss_pred c------cccc---------cCCChhh-----HHHH---------HHHHHHHHHHHHHcCcc-----eeecccCccHHHH
Q 029613 72 G------LNKN---------LGFSAED-----RTEN---------IRRVGEVAKLFADAGLI-----CIASLISPYRKDR 117 (190)
Q Consensus 72 ~------~~~~---------i~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr 117 (190)
. .+.. .++.+.. ..+- .++-..+..+++..++. .++.++|||||||
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR 437 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR 437 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH
Confidence 0 0000 1111110 0010 11112355566666654 3589999999999
Q ss_pred -HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 118 -DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 118 -~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+|||||+.+|+++ ++|||+|+||.....++...+++
T Consensus 438 vaIARALa~~P~ll--i~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 438 VAIARALALEPKLL--ILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred HHHHHHHhcCCCEE--EecCCccccCHHHHHHHHHHHHH
Confidence 6999999999999 99999999999999988888776
No 219
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=2.5e-28 Score=193.60 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=111.6
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|+. +.+++++||++++|++++|+|+||||||||+++|+|.+ ++.+|.|.++|.++.. ..+..++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 578999999964 47999999999999999999999999999999999977 7889999999976532 1122233
Q ss_pred CChhh-------HHHHHHH-----HHHHHHHHHHcCc---------------ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 79 FSAED-------RTENIRR-----VGEVAKLFADAGL---------------ICIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 79 ~~~~~-------~~~~~~~-----~~~~~~~~~~~~~---------------~~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
|.+++ ..+++.. ...+...+...++ ...+..+|+||+|| .+||+++.+|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 33322 1111110 0011111111111 12467799999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||+..++.+++.+++-+
T Consensus 162 --llDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 162 --VLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred --EEeCccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998743
No 220
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-28 Score=200.31 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=116.4
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----cc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH-----GL 73 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~-----~~ 73 (190)
++++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++.. ..
T Consensus 20 ~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred cEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 478999999999988999999999999999999999999999999999998732 368999999976532 11
Q ss_pred ccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhC
Q 029613 74 NKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall 124 (190)
+..++|.+++ ..+++... ..+...+...++. ..+..+|+||+|| .+||+++
T Consensus 100 ~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~ 179 (276)
T PRK14271 100 RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179 (276)
T ss_pred hhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 2233443332 22222210 0112233444442 2256799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||...++.+++.+++-
T Consensus 180 ~~p~ll--lLDEPt~~LD~~~~~~l~~~L~~~ 209 (276)
T PRK14271 180 VNPEVL--LLDEPTSALDPTTTEKIEEFIRSL 209 (276)
T ss_pred cCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999988864
No 221
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4e-28 Score=196.07 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=114.0
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~------~ 72 (190)
+|++++|++++|+...+++++||++.+|++++|+|+||||||||+++|+|++. .+ .+|+|.++|.++.. .
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 47899999999998889999999999999999999999999999999999763 23 48999999976631 1
Q ss_pred cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral 123 (190)
....++|.+++ ..+++... ..+...+...++ ...+..+|+||+|| .+||++
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 12223333322 22222110 011122233322 12367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||...++.+.+.+++-
T Consensus 164 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14255 164 AVKPDVI--LLDEPTSALDPISSTQIENMLLEL 194 (252)
T ss_pred hcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999888764
No 222
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4e-28 Score=198.70 Aligned_cols=151 Identities=18% Similarity=0.117 Sum_probs=114.5
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~~------~~ 73 (190)
||+++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.. + .+|.|.++|.++.. ..
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~ 99 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL 99 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence 78999999999988899999999999999999999999999999999998732 2 58999999977531 11
Q ss_pred ccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhCCC
Q 029613 74 NKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall~~ 126 (190)
+..++|.+++ ..+++... ..+...+...++ ...+..+|+||+|| .+||+++.+
T Consensus 100 ~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~ 179 (274)
T PRK14265 100 RRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMK 179 (274)
T ss_pred hhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 2233333332 22222110 011122233332 12367799999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||...++.+++.+++-
T Consensus 180 p~ll--lLDEPt~~LD~~~~~~l~~~L~~~ 207 (274)
T PRK14265 180 PDVL--LMDEPCSALDPISTRQVEELCLEL 207 (274)
T ss_pred CCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999865
No 223
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=8e-28 Score=180.36 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=112.5
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
.++++++.+.-++.++|+++||++++||.++|+||||||||||+|+++.++ ++++|.++|.|+++.. ..+..++|
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCccccccChHHHHHHHHH
Confidence 467888888888899999999999999999999999999999999999977 8999999999998753 12222333
Q ss_pred Chhh-------HHHHHH--------HH--HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 80 SAED-------RTENIR--------RV--GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 80 ~~~~-------~~~~~~--------~~--~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
..+. .+.++- +. .....++.++++- ..+..+|||++|| +++|.|.--|+++ +|||
T Consensus 82 ~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~IL--LLDE 159 (223)
T COG4619 82 CAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKIL--LLDE 159 (223)
T ss_pred HHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceE--EecC
Confidence 2221 111100 00 0122233344332 2377899999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHc
Q 029613 137 PLELCEARDPKGLYKLARA 155 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~ 155 (190)
|||+||+..++.+-+++-+
T Consensus 160 ~TsALD~~nkr~ie~mi~~ 178 (223)
T COG4619 160 ITSALDESNKRNIEEMIHR 178 (223)
T ss_pred chhhcChhhHHHHHHHHHH
Confidence 9999999998877776654
No 224
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=215.93 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=117.8
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i 77 (190)
+|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-QPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4789999999998888999999999999999999999999999999999977 7889999999876531 112223
Q ss_pred CCChhh--------HHHHHHH---------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 78 GFSAED--------RTENIRR---------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
+|.+++ ..+++.. ...+..++...++. ..+..||+||+|| .+||+++.+|++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV 161 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 333322 1111110 11233445555553 2367899999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+..++.+++.+++.
T Consensus 162 l--lLDEPt~~LD~~~~~~l~~~l~~~ 186 (501)
T PRK11288 162 I--AFDEPTSSLSAREIEQLFRVIREL 186 (501)
T ss_pred E--EEcCCCCCCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999888764
No 225
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=2.4e-28 Score=191.35 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=110.9
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc-----cccccC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG-----LNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~-----~~~~i~ 78 (190)
++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|.+ .++.+|.|.++|.++... .+..++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 46889999998888999999999999999999999999999999999974 267899999999876431 112245
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 79 FSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|.+++..-. .. ..+...+ ......+|+||+|| .+||+++.+|+++ +|||||++||...+..+++.+++.
T Consensus 81 ~v~q~~~~~-~~-~~~~~~l-----~~~~~~LS~G~~qrv~laral~~~p~il--llDEPt~~LD~~~~~~l~~~L~~~ 150 (200)
T cd03217 81 LAFQYPPEI-PG-VKNADFL-----RYVNEGFSGGEKKRNEILQLLLLEPDLA--ILDEPDSGLDIDALRLVAEVINKL 150 (200)
T ss_pred EeecChhhc-cC-ccHHHHH-----hhccccCCHHHHHHHHHHHHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 555432110 00 0011111 11235799999999 6999999999999 999999999999999999988864
No 226
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.8e-28 Score=197.96 Aligned_cols=151 Identities=21% Similarity=0.141 Sum_probs=115.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~~ 73 (190)
+++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.. +.+|.|.++|.++.. ..
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 68999999999888899999999999999999999999999999999998742 478999999977532 11
Q ss_pred ccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhC
Q 029613 74 NKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall 124 (190)
+..++|.+++ ..+++... ..+...+...++. ..+..+|+||+|| .+||+++
T Consensus 105 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 184 (272)
T PRK14236 105 RRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA 184 (272)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 2233333322 22222110 1122233333331 2367799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||+..+..+++.+++.
T Consensus 185 ~~p~ll--lLDEPt~gLD~~~~~~l~~~L~~~ 214 (272)
T PRK14236 185 IEPEVL--LLDEPTSALDPISTLKIEELITEL 214 (272)
T ss_pred CCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999998865
No 227
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.95 E-value=4e-28 Score=194.48 Aligned_cols=153 Identities=24% Similarity=0.288 Sum_probs=112.1
Q ss_pred cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
++++|+++.|++ ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++.. ..+..+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEEECCEehhhcCHHHHHhhE
Confidence 468899999964 46999999999999999999999999999999999987 7889999999976532 111223
Q ss_pred CCChhh-------HHHHHHH---------HHH------HHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRR---------VGE------VAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
+|.+++ ..+++.. ... +...+... ++ ...+..+|+||+|| .+||+++.+|+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 333332 1111110 000 01111111 11 12256799999999 59999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGL 161 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~ 161 (190)
++ +|||||++||+..++.+++.+++.. +|.
T Consensus 160 ll--llDEP~~gLD~~~~~~l~~~l~~~~-~g~ 189 (238)
T cd03249 160 IL--LLDEATSALDAESEKLVQEALDRAM-KGR 189 (238)
T ss_pred EE--EEeCccccCCHHHHHHHHHHHHHhc-CCC
Confidence 99 9999999999999999999998765 453
No 228
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=2.6e-28 Score=212.19 Aligned_cols=152 Identities=20% Similarity=0.215 Sum_probs=117.2
Q ss_pred CcccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC---CCcEEEEcCcccccc--
Q 029613 2 ATVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR---GKLSYILDGDNLRHG-- 72 (190)
Q Consensus 2 ~~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~---~~g~i~~~g~~~~~~-- 72 (190)
.++|+++|++++|.. +.+++|+||++.+||+++|+|+|||||||++++|.|+++.. .+|.|.|+|.++...
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred CceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 358999999999853 36999999999999999999999999999999999988433 279999999865321
Q ss_pred ------cccccCCChhh--------------HHHHH---------HHHHHHHHHHHHcCcc------eeecccCccHHHH
Q 029613 73 ------LNKNLGFSAED--------------RTENI---------RRVGEVAKLFADAGLI------CIASLISPYRKDR 117 (190)
Q Consensus 73 ------~~~~i~~~~~~--------------~~~~~---------~~~~~~~~~~~~~~~~------~~~~~lS~g~kqr 117 (190)
....+++.+|+ ..+.+ .......+++...++. .++..||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 11223344333 11110 0112344555555552 3788999999999
Q ss_pred H-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 118 D-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 118 ~-iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
. ||+|++.+|+++ ++||||++||...+.++++.+++
T Consensus 163 v~iAmALa~~P~LL--IaDEPTTaLDvt~q~qIL~llk~ 199 (539)
T COG1123 163 VMIAMALALKPKLL--IADEPTTALDVTTQAQILDLLKD 199 (539)
T ss_pred HHHHHHHhCCCCEE--EECCCccccCHHHHHHHHHHHHH
Confidence 5 999999999999 99999999999999999999987
No 229
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.95 E-value=2.4e-28 Score=222.15 Aligned_cols=149 Identities=21% Similarity=0.155 Sum_probs=116.6
Q ss_pred cccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|+ +.++++++||++++|+.++|+|+||||||||+|+|+|++ +|.+|.|.+||.++.. .++..++
T Consensus 452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred EEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 68899999995 357999999999999999999999999999999999977 8899999999988753 3444556
Q ss_pred CChhh-------HHHHHHHH-----HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 79 FSAED-------RTENIRRV-----GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
+.+|+ ..+++... .++...++..++. +-...|||||||| ++|||++++|+++
T Consensus 531 ~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 531 VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 65554 23333210 1122222222221 1245699999999 7999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+||||||+||+...+.+++.+++.
T Consensus 611 --iLDEpTS~LD~~te~~i~~~L~~~ 634 (686)
T TIGR03797 611 --LFDEATSALDNRTQAIVSESLERL 634 (686)
T ss_pred --EEeCCccCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999864
No 230
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.2e-28 Score=195.90 Aligned_cols=151 Identities=19% Similarity=0.134 Sum_probs=114.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--C--CCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--R--GKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~--~~g~i~~~g~~~~~------~~ 73 (190)
+++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+ + .+|.|.++|.++.. ..
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 68899999999888899999999999999999999999999999999998732 2 47999999976531 11
Q ss_pred ccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613 74 NKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall 124 (190)
+..++|.+++ ..+++.. . ..+...+...++ ...+..+|+||+|| .+||+++
T Consensus 87 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 87 RRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred hhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2223333322 2222211 0 112223333333 12367899999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||...++.+++.+++-
T Consensus 167 ~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 196 (259)
T PRK14260 167 IKPKVL--LMDEPCSALDPIATMKVEELIHSL 196 (259)
T ss_pred cCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999864
No 231
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.4e-28 Score=200.20 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=114.4
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~ 73 (190)
+++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++. + +.+|.|.++|.++.. ..
T Consensus 39 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~ 118 (286)
T PRK14275 39 HVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL 118 (286)
T ss_pred EEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHh
Confidence 6889999999988889999999999999999999999999999999999752 2 389999999976532 11
Q ss_pred ccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613 74 NKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall 124 (190)
+..++|.+++ ..+++.. . ..+...+...++ ...+..||+||+|| .+||+++
T Consensus 119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 198 (286)
T PRK14275 119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA 198 (286)
T ss_pred hhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 2233443332 1122211 0 112223333332 22367799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||...++.+++.+++-
T Consensus 199 ~~p~ll--lLDEPt~gLD~~~~~~l~~~L~~~ 228 (286)
T PRK14275 199 VEPEIL--LLDEPTSALDPKATAKIEDLIQEL 228 (286)
T ss_pred cCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999998864
No 232
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=2.4e-28 Score=191.98 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=114.2
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
.++++|++++|+. ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..+
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 5789999999975 47999999999999999999999999999999999977 7889999999976532 112234
Q ss_pred CCChhh-------HHHHHHHHH--HHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613 78 GFSAED-------RTENIRRVG--EVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK 147 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~ 147 (190)
+|.+++ ..+++.... ....+.....+...+..+|+|++|| .+||+++.+|+++ +|||||++||+..++
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~ll--llDEP~~~LD~~~~~ 162 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVL--VLDEATASIDYATDA 162 (207)
T ss_pred EEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEE--EEeCCcccCCHHHHH
Confidence 443332 222221110 0011111112334467899999999 6999999999999 999999999999999
Q ss_pred HHHHHHHcC
Q 029613 148 GLYKLARAG 156 (190)
Q Consensus 148 ~~~~~~~~~ 156 (190)
.+++.+++-
T Consensus 163 ~l~~~l~~~ 171 (207)
T cd03369 163 LIQKTIREE 171 (207)
T ss_pred HHHHHHHHh
Confidence 999999874
No 233
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.2e-28 Score=194.59 Aligned_cols=150 Identities=21% Similarity=0.132 Sum_probs=114.2
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------ccc
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GLN 74 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~~ 74 (190)
-+++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++. + +.+|.|.++|.++.. ..+
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 468899999988889999999999999999999999999999999999763 1 368999999976532 112
Q ss_pred cccCCChhh-------HHHHHHHH--------------HHHHHHHHHcCcce--------eecccCccHHHH-HHHHHhC
Q 029613 75 KNLGFSAED-------RTENIRRV--------------GEVAKLFADAGLIC--------IASLISPYRKDR-DACRAML 124 (190)
Q Consensus 75 ~~i~~~~~~-------~~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~lS~g~kqr-~iarall 124 (190)
..++|.+++ ..+++... ..+..++...++.. .+..+|+||+|| .+||+++
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 223333322 12222110 11233445555421 356799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||...++.+++.+++.
T Consensus 166 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 195 (251)
T PRK14244 166 VKPTML--LMDEPCSALDPVATNVIENLIQEL 195 (251)
T ss_pred cCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999865
No 234
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.9e-28 Score=197.84 Aligned_cols=151 Identities=21% Similarity=0.168 Sum_probs=114.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~ 73 (190)
|++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++. + +.+|.|.++|.++.. ..
T Consensus 24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 103 (271)
T PRK14238 24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL 103 (271)
T ss_pred EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence 7899999999988889999999999999999999999999999999999873 1 578999999976531 11
Q ss_pred ccccCCChhh-------HHHHHHHH------------H-HHHHHHHHcC----c----ceeecccCccHHHH-HHHHHhC
Q 029613 74 NKNLGFSAED-------RTENIRRV------------G-EVAKLFADAG----L----ICIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~~------------~-~~~~~~~~~~----~----~~~~~~lS~g~kqr-~iarall 124 (190)
...++|.+++ ..+++... . .+...+...+ + ...+..+|+||+|| .+||+++
T Consensus 104 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~ 183 (271)
T PRK14238 104 RTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA 183 (271)
T ss_pred hhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 2223333332 22222210 0 0111222221 1 12367799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||+..++.+++.+++.
T Consensus 184 ~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 213 (271)
T PRK14238 184 IEPDVI--LMDEPTSALDPISTLKVEELVQEL 213 (271)
T ss_pred cCCCEE--EEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999988764
No 235
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.9e-28 Score=190.70 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=109.9
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------ccccc
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNKN 76 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~~ 76 (190)
+.. +|+|+|+++.+ ++||++++ ++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-KPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccchhhhhhHhhc
Confidence 344 89999998766 99999999 999999999999999999999987 7889999999876531 01112
Q ss_pred cCCChhh--------HHHHHHH----------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 77 LGFSAED--------RTENIRR----------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 77 i~~~~~~--------~~~~~~~----------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
++|.+++ ..+++.. -..+..++...++.. .+..+|+||+|| .+||+++.+|+++ +
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--l 154 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL--L 154 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE--E
Confidence 3332222 1222211 112334455555532 367899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcC
Q 029613 134 MNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||||++||...++.+++.+++.
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~ 177 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQI 177 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 236
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.4e-28 Score=199.89 Aligned_cols=152 Identities=22% Similarity=0.152 Sum_probs=115.5
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~ 72 (190)
++|.++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++.. .
T Consensus 44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred ceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 478999999999988899999999999999999999999999999999998732 578999999976532 1
Q ss_pred cccccCCChhh-------HHHHHHH-------------------------HHHHHHHHHHcCc--------ceeecccCc
Q 029613 73 LNKNLGFSAED-------RTENIRR-------------------------VGEVAKLFADAGL--------ICIASLISP 112 (190)
Q Consensus 73 ~~~~i~~~~~~-------~~~~~~~-------------------------~~~~~~~~~~~~~--------~~~~~~lS~ 112 (190)
.+..++|.+++ ..+++.. -..+..++...++ ...+..+|+
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 203 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG 203 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence 12233443332 1111110 0112222333332 123677999
Q ss_pred cHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 113 YRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 113 g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||+|| .+||+++.+|+++ +|||||++||...++.+.+.+++.
T Consensus 204 Gq~qrv~LAraL~~~p~lL--LLDEPtsgLD~~~~~~l~~~L~~~ 246 (305)
T PRK14264 204 GQQQRLCIARCLAVDPEVI--LMDEPASALDPIATSKIEDLIEEL 246 (305)
T ss_pred HHHHHHHHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999 6999999999999 999999999999999999999865
No 237
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=4.8e-28 Score=195.53 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=115.6
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc----ccc-c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG----LNK-N 76 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~----~~~-~ 76 (190)
+|++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+. .++.+|.|.++|.++... ... .
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 3789999999998888999999999999999999999999999999999963 267899999998765321 000 1
Q ss_pred cCCChhh--------HHHHHHH-------------------HHHHHHHHHHcCcc-----eeec-ccCccHHHH-HHHHH
Q 029613 77 LGFSAED--------RTENIRR-------------------VGEVAKLFADAGLI-----CIAS-LISPYRKDR-DACRA 122 (190)
Q Consensus 77 i~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~-----~~~~-~lS~g~kqr-~iara 122 (190)
+++.+++ ..+++.. ...+..++...++. ..+. .+|+||+|| .+||+
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 165 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQM 165 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHH
Confidence 2222111 1111110 01223344444443 1244 499999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
++.+|+++ +|||||++||...++.+++.+++....|
T Consensus 166 l~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~~~~g 201 (252)
T CHL00131 166 ALLDSELA--ILDETDSGLDIDALKIIAEGINKLMTSE 201 (252)
T ss_pred HHcCCCEE--EEcCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 99999999 9999999999999999999988654334
No 238
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.5e-28 Score=207.13 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=121.6
Q ss_pred cccCcceeccCccc-cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQESPIG-RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~~~-~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
|+++|++++|+.++ +|+++||+|++||-++|+|+|||||||++|+|.+.+ + .+|.|++||.++.. .+++.+++
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~-d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-D-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh-c-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 78999999999776 999999999999999999999999999999999977 4 89999999999864 56777888
Q ss_pred ChhhH-------HHHHH---------HHH------HHHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAEDR-------TENIR---------RVG------EVAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~~-------~~~~~---------~~~------~~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
+||+- ..++. .+- .+.+.+... |. -+....+||||||| .+||+++++|+++
T Consensus 430 VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 430 VPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred eCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeE
Confidence 88871 12211 111 112222222 21 12356799999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
++|||||.||......+.+.+++ ..++.|
T Consensus 510 --~~DEaTS~LD~~TE~~i~~~i~~-~~~~rT 538 (591)
T KOG0057|consen 510 --LLDEATSALDSETEREILDMIMD-VMSGRT 538 (591)
T ss_pred --EecCcccccchhhHHHHHHHHHH-hcCCCe
Confidence 99999999999999999999987 334444
No 239
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.2e-28 Score=192.95 Aligned_cols=148 Identities=17% Similarity=0.230 Sum_probs=113.3
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCChh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSAE 82 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~~ 82 (190)
|+++|++++|++. +++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.++++|.++... .+..+++.++
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 4688999999764 899999999999999999999999999999999977 78899999999765321 1112222222
Q ss_pred h--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 83 D--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 83 ~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+ ..+++.. -.++..++...++.. .+..+|+||+|| .+||+++.+|+++ +||||
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llDEP 156 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKIL--LLDEP 156 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEE--EECCC
Confidence 1 1222211 012233444555532 367799999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHHcC
Q 029613 138 LELCEARDPKGLYKLARAG 156 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~~~ 156 (190)
|++||...++.+++.+++.
T Consensus 157 t~gLD~~~~~~l~~~l~~~ 175 (235)
T cd03299 157 FSALDVRTKEKLREELKKI 175 (235)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 240
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=8.6e-28 Score=192.24 Aligned_cols=150 Identities=22% Similarity=0.223 Sum_probs=110.5
Q ss_pred cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|+ +..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 46789999995 567999999999999999999999999999999999977 7889999999976532 11112233
Q ss_pred Chhh-------HHHHHHH---------HHH------HHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAED-------RTENIRR---------VGE------VAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+++ ..+++.. +.. +...+... ++ ...+..||+||+|| .+||+++.+|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 3222 1121110 000 01111111 11 11246799999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||+..++.+++.+++..
T Consensus 160 --llDEP~~~LD~~~~~~l~~~l~~~~ 184 (236)
T cd03253 160 --LLDEATSALDTHTEREIQAALRDVS 184 (236)
T ss_pred --EEeCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998654
No 241
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.95 E-value=3.7e-28 Score=221.59 Aligned_cols=148 Identities=21% Similarity=0.205 Sum_probs=115.6
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|++ .++++|+||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.+||.++.. .++..++
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 688999999974 57999999999999999999999999999999999977 8899999999988753 2444556
Q ss_pred CChhh-------HHHHHHHH------HHHH---------HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIRRV------GEVA---------KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~------~~~~---------~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
|.+|+ .++++... .++. +.+... |+. +-...|||||||| ++||+++++|++
T Consensus 557 ~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i 636 (710)
T TIGR03796 557 MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636 (710)
T ss_pred EEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 65554 22332110 1111 111111 221 1245699999999 799999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+ +||||||+||+...+.+++.+++
T Consensus 637 l--iLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 637 L--ILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred E--EEECccccCCHHHHHHHHHHHHh
Confidence 9 99999999999999999999986
No 242
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-27 Score=185.61 Aligned_cols=149 Identities=21% Similarity=0.212 Sum_probs=110.2
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----------
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----------- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----------- 72 (190)
||+.+|++++..++.+++++||++++||+.+|+||||||||||+|.|+|.+ .|++|.+.++|.++...
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel-~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc-CCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 589999999999999999999999999999999999999999999999988 78999999999876431
Q ss_pred cc----cccCCChhhHHHHH----------HHHHH-HHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCC-----
Q 029613 73 LN----KNLGFSAEDRTENI----------RRVGE-VAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDS----- 127 (190)
Q Consensus 73 ~~----~~i~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~----- 127 (190)
+. -.+.|..++..+.- ..-.+ ....+...++. .....||||++|| .+||.|.+-+
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~ 159 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPS 159 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCC
Confidence 00 01223333321100 00011 12223333332 2366799999999 5999987633
Q ss_pred -CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 128 -NFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 128 -~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
.++ +||||||+||..-....+..+++
T Consensus 160 ~r~L--~LDEPtsaLDi~HQ~~tl~laR~ 186 (259)
T COG4559 160 GRWL--FLDEPTSALDIAHQHHTLRLARQ 186 (259)
T ss_pred CceE--EecCCccccchHHHHHHHHHHHH
Confidence 367 99999999999998888877776
No 243
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=6.1e-28 Score=189.32 Aligned_cols=148 Identities=21% Similarity=0.163 Sum_probs=104.0
Q ss_pred cccCcceeccCcc-----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---c----
Q 029613 5 GNSTNIFWQESPI-----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---G---- 72 (190)
Q Consensus 5 l~~~~l~~~~~~~-----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~---- 72 (190)
++++|++++|++. .+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|. +.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g~-i~~~~q~~~l~ 78 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPGS-IAYVSQEPWIQ 78 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcCE-EEEEecCchhc
Confidence 4689999999764 6999999999999999999999999999999999977 788999999872 110 0
Q ss_pred ---cccccCCChhhHHHHHHHHH---HHHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 73 ---LNKNLGFSAEDRTENIRRVG---EVAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 73 ---~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
...++.+......+...... .+...+... +. ...+..+|+|++|| .+||+++.+|+++ +|||||+
T Consensus 79 ~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ll--llDEP~~ 156 (204)
T cd03250 79 NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIY--LLDDPLS 156 (204)
T ss_pred cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEeCccc
Confidence 00111111000000011100 011112111 11 12356799999999 6999999999999 9999999
Q ss_pred hhhhcChHHHHHH-HHcC
Q 029613 140 LCEARDPKGLYKL-ARAG 156 (190)
Q Consensus 140 ~ld~~~~~~~~~~-~~~~ 156 (190)
+||+...+.+++. +++.
T Consensus 157 ~LD~~~~~~l~~~ll~~~ 174 (204)
T cd03250 157 AVDAHVGRHIFENCILGL 174 (204)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 9999999988874 4543
No 244
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=194.40 Aligned_cols=150 Identities=19% Similarity=0.110 Sum_probs=113.4
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-----CcEEEEcCccccc------c
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-----KLSYILDGDNLRH------G 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-----~g~i~~~g~~~~~------~ 72 (190)
+++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++. .|.+.++|.++.. .
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN-ELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc-CCCCCccccceEEECCEEhhccccchHH
Confidence 689999999998878999999999999999999999999999999999987 443 7889998876521 1
Q ss_pred cccccCCChh-------hHHHHHHH-------------HHHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613 73 LNKNLGFSAE-------DRTENIRR-------------VGEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~~~~i~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral 123 (190)
.+..++|.++ ...+++.. ...+...+...++ ...+..||+||+|| .+||++
T Consensus 86 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 1122333222 12222211 0112233334443 12357799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||...++.+++.+++-
T Consensus 166 ~~~p~vl--lLDEP~~~LD~~~~~~l~~~l~~l 196 (261)
T PRK14258 166 AVKPKVL--LMDEPCFGLDPIASMKVESLIQSL 196 (261)
T ss_pred hcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999988863
No 245
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=4.4e-28 Score=186.46 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=98.8
Q ss_pred CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHH
Q 029613 8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87 (190)
Q Consensus 8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~ 87 (190)
.|++++|+++.++++ +|++++|++++|+||||||||||+++|+|++ ++.+|.|.++|..+. +.++...
T Consensus 4 ~~l~~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~--------~~~q~~~-- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDGITPV--------YKPQYID-- 71 (177)
T ss_pred CCeEEEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECCEEEE--------EEcccCC--
Confidence 689999999889988 4999999999999999999999999999977 788999999986532 3332110
Q ss_pred HHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 88 IRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|+||+|| .+||+++.+|+++ +|||||++||+..++.+.+.+++-
T Consensus 72 ----------------------LSgGq~qrv~laral~~~p~ll--lLDEPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 72 ----------------------LSGGELQRVAIAAALLRNATFY--LFDEPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred ----------------------CCHHHHHHHHHHHHHhcCCCEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence 89999999 6999999999999 999999999999999888888764
No 246
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=192.66 Aligned_cols=151 Identities=21% Similarity=0.174 Sum_probs=114.5
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~ 73 (190)
+++++|+++.|+++.+++++||++.+|++++|+|+||||||||+++|+|++. + +.+|.|.++|.++.. ..
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5789999999988889999999999999999999999999999999999763 2 378999999977532 11
Q ss_pred ccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613 74 NKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML 124 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall 124 (190)
...++|.+++ ..+++.. . ..+...+...++ ...+..+|+|++|| .+||+++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 2233433332 1222211 0 011222333333 12367799999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+++ +|||||++||...+..+++.+++.
T Consensus 163 ~~p~ll--llDEP~~gLD~~~~~~l~~~l~~~ 192 (250)
T PRK14266 163 VSPEVI--LMDEPCSALDPISTTKIEDLIHKL 192 (250)
T ss_pred cCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999865
No 247
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=6.8e-28 Score=213.39 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=116.4
Q ss_pred cccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCcccccc--
Q 029613 3 TVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRHG-- 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~~-- 72 (190)
+|++++|++++|++ +.+++++||++.+||+++|+||||||||||+|+|+|++++ +.+|.|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 48999999999963 5799999999999999999999999999999999998843 2689999999875321
Q ss_pred -----cc-cccCCChhhH----------HHHHH-------------HHHHHHHHHHHcCcc-------eeecccCccHHH
Q 029613 73 -----LN-KNLGFSAEDR----------TENIR-------------RVGEVAKLFADAGLI-------CIASLISPYRKD 116 (190)
Q Consensus 73 -----~~-~~i~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~-------~~~~~lS~g~kq 116 (190)
.+ ..++|.+++. .+++. ...++...+...++. ..+..||+||+|
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 11 2344443321 11110 001233445555653 247789999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
| .+||+++.+|+++ +|||||++||+..++.+.+.+++.
T Consensus 164 rv~iAraL~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~l 202 (529)
T PRK15134 164 RVMIAMALLTRPELL--IADEPTTALDVSVQAQILQLLREL 202 (529)
T ss_pred HHHHHHHHhcCCCEE--EEcCCCCccCHHHHHHHHHHHHHH
Confidence 9 6999999999999 999999999999999999888763
No 248
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.95 E-value=7.4e-28 Score=219.59 Aligned_cols=148 Identities=22% Similarity=0.182 Sum_probs=114.8
Q ss_pred cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|+ +.++++++||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.+||.++.. .++..++|
T Consensus 474 I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred EEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 67899999997 467999999999999999999999999999999999977 7899999999987643 23444555
Q ss_pred Chhh-------HHHHHHHH-------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 80 SAED-------RTENIRRV-------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 80 ~~~~-------~~~~~~~~-------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
.+++ ..+++... .++...+... |+. +....+||||||| .+|||++++|++
T Consensus 553 v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i 632 (708)
T TIGR01193 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV 632 (708)
T ss_pred EecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 5554 22332211 0111111111 111 1246699999999 799999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+ +|||||++||....+.+++.+++
T Consensus 633 l--iLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 633 L--ILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred E--EEeCccccCCHHHHHHHHHHHHH
Confidence 9 99999999999999999999986
No 249
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.95 E-value=1e-27 Score=214.29 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=114.5
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.++|.++.. ..+..++
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceEEECCEEhhhcCHHHHHhhce
Confidence 788999999964 56999999999999999999999999999999999977 8899999999987643 2334455
Q ss_pred CChhh-------HHHHHHHH-------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 79 FSAED-------RTENIRRV-------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~-------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
|.+|+ ..+++... .++...+... |+. +-...+||||||| .+||+++++|+
T Consensus 421 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ 500 (582)
T PRK11176 421 LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_pred EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 55554 22332210 0111111111 111 1245699999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ +|||||++||+...+.+++.+.+.
T Consensus 501 il--ilDEptsaLD~~t~~~i~~~l~~~ 526 (582)
T PRK11176 501 IL--ILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred EE--EEECccccCCHHHHHHHHHHHHHH
Confidence 99 999999999999999999888763
No 250
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=1.1e-27 Score=202.65 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=110.1
Q ss_pred cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------ccccccCCC
Q 029613 9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNKNLGFS 80 (190)
Q Consensus 9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~~i~~~ 80 (190)
|++++|++..+ ++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|.
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 78999987654 999999999999999999999999999999977 7889999999977632 112223333
Q ss_pred hhh--------HHHHHHH----------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 81 AED--------RTENIRR----------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 81 ~~~--------~~~~~~~----------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+++ ..+++.. -..+..++...++.. .+..||+||+|| .+||+++.+|+++ +||||
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll--lLDEP 158 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL--LMDEP 158 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEcCC
Confidence 322 2222221 012334455555543 367899999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHHcC
Q 029613 138 LELCEARDPKGLYKLARAG 156 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~~~ 156 (190)
|++||+..++.+++.+++.
T Consensus 159 ts~LD~~~~~~l~~~L~~l 177 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERL 177 (354)
T ss_pred CcCCCHHHHHHHHHHHHHH
Confidence 9999999999999888764
No 251
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=193.55 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=116.4
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------GL 73 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~~ 73 (190)
.+.++++++.|+...+++++||++.+|++++|+|+||||||||+++|+|++.+ +.+|.|.++|.++.. ..
T Consensus 8 ~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 87 (261)
T PRK14263 8 VMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87 (261)
T ss_pred eEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence 57888999999988999999999999999999999999999999999998743 268999999987632 11
Q ss_pred ccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhCCC
Q 029613 74 NKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 74 ~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall~~ 126 (190)
+..++|.+++ ..+++... ..+...+...++. ..+..+|+||+|| .+||+++.+
T Consensus 88 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~ 167 (261)
T PRK14263 88 RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATE 167 (261)
T ss_pred hhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2223443332 22222210 1233344444442 1245699999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
|+++ +|||||++||+..++.+++.+++..
T Consensus 168 p~ll--llDEPtsgLD~~~~~~l~~~l~~~~ 196 (261)
T PRK14263 168 PEVL--LLDEPCSALDPIATRRVEELMVELK 196 (261)
T ss_pred CCEE--EEeCCCccCCHHHHHHHHHHHHHHh
Confidence 9999 9999999999999999999998753
No 252
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.95 E-value=8.5e-28 Score=192.71 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=104.4
Q ss_pred ccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCCh-h------
Q 029613 13 QESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFSA-E------ 82 (190)
Q Consensus 13 ~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~~-~------ 82 (190)
.|+.+++++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.+... .....++|.+ +
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 345567999999999999999999999999999999999977 7889999999875421 1111222221 1
Q ss_pred --hHHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613 83 --DRTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA 143 (190)
Q Consensus 83 --~~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~ 143 (190)
...+++.. ...+..++...++.. .+..+|+||+|| .+|++++.+|+++ +|||||++||+
T Consensus 109 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--llDEPt~~LD~ 186 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEIL--FLDEPTIGLDV 186 (236)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCH
Confidence 01122111 011223344445432 367799999999 6999999999999 99999999999
Q ss_pred cChHHHHHHHHcC
Q 029613 144 RDPKGLYKLARAG 156 (190)
Q Consensus 144 ~~~~~~~~~~~~~ 156 (190)
..++.+++.+++-
T Consensus 187 ~~~~~l~~~l~~~ 199 (236)
T cd03267 187 VAQENIRNFLKEY 199 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 253
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=6.6e-28 Score=215.95 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=115.4
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|++ .++++|+||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.+||.++.. .++..++|
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 678999999964 57999999999999999999999999999999999977 8889999999987643 33445555
Q ss_pred Chhh-------HHHHHHHH-----HHHHHHHHHcCc-----------c----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 80 SAED-------RTENIRRV-----GEVAKLFADAGL-----------I----CIASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 80 ~~~~-------~~~~~~~~-----~~~~~~~~~~~~-----------~----~~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
.+|+ ..+|+... .++.......++ . .....+||||||| ++|||++.+|+++
T Consensus 420 v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il- 498 (592)
T PRK10790 420 VQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL- 498 (592)
T ss_pred EccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE-
Confidence 5554 22333211 111112222221 1 1245699999999 7999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+...+.+.+.+++.
T Consensus 499 -llDEpts~LD~~t~~~i~~~l~~~ 522 (592)
T PRK10790 499 -ILDEATANIDSGTEQAIQQALAAV 522 (592)
T ss_pred -EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999888763
No 254
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=193.76 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=114.0
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCcccc--------c
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLR--------H 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~--------~ 71 (190)
+|+++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++.+ + .+|.|.++|.++. .
T Consensus 16 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~ 95 (265)
T PRK14252 16 KSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI 95 (265)
T ss_pred eEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence 68899999999888899999999999999999999999999999999997732 2 6899999886542 0
Q ss_pred ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHH
Q 029613 72 GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRA 122 (190)
Q Consensus 72 ~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iara 122 (190)
.....++|.+++ ..+++... ..+...+...++. ..+..+|+|++|| .+||+
T Consensus 96 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 175 (265)
T PRK14252 96 EVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA 175 (265)
T ss_pred HHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence 112233443332 22222210 1122233333331 2356799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||...++.+.+.+++.
T Consensus 176 l~~~p~ll--llDEPt~gLD~~~~~~l~~~l~~l 207 (265)
T PRK14252 176 LATDPEIL--LFDEPTSALDPIATASIEELISDL 207 (265)
T ss_pred HHcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999988864
No 255
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.94 E-value=1.3e-27 Score=218.12 Aligned_cols=169 Identities=20% Similarity=0.156 Sum_probs=119.9
Q ss_pred ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
.++++|++++|++ .++++|+||++++|+.++|+||||||||||+++|+|++ ++.+|.|.+||.++.. ..+..
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHhh
Confidence 3789999999964 46999999999999999999999999999999999987 8899999999987643 23334
Q ss_pred cCCChhh-------HHHHHHHH------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCC
Q 029613 77 LGFSAED-------RTENIRRV------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 77 i~~~~~~-------~~~~~~~~------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~ 127 (190)
++|.+|+ .++|+..- .++...+... |+. +-...+||||||| ++||+++++|
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 4555443 22332210 1111111111 111 1245699999999 7999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc--cccccccCCCCCCceEE
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL--SIFSFCYYEKLIPRTCK 179 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~p~~~~ 179 (190)
+++ +||||||+||....+.+++ ... .++.+ -+.+. .+.....|.++
T Consensus 637 ~IL--ILDEpTSaLD~~te~~i~~-~~~--~~~~TvIiItHr-l~~i~~aD~Ii 684 (711)
T TIGR00958 637 RVL--ILDEATSALDAECEQLLQE-SRS--RASRTVLLIAHR-LSTVERADQIL 684 (711)
T ss_pred CEE--EEEccccccCHHHHHHHHH-hhc--cCCCeEEEEecc-HHHHHhCCEEE
Confidence 999 9999999999998888887 222 23333 44444 44444455433
No 256
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=1e-27 Score=214.13 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=116.7
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
.++++|++++|++ .++++++||++++|++++|+||||||||||+++|+|.+ ++.+|.|.++|.++.. ..+..+
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhhe
Confidence 3789999999964 46999999999999999999999999999999999977 8899999999987643 234445
Q ss_pred CCChhh-------HHHHHHHH------HHHHHHHHHcCcce--------------eecccCccHHHH-HHHHHhCCCCCe
Q 029613 78 GFSAED-------RTENIRRV------GEVAKLFADAGLIC--------------IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~--------------~~~~lS~g~kqr-~iarall~~~~i 129 (190)
++.+++ ..+|+... .++...+...++.. ....+||||||| ++||+++.+|++
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i 496 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL 496 (574)
T ss_pred eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 555554 23333210 12222222222221 245699999999 799999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+...+.+.+.+++.
T Consensus 497 l--ilDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 497 L--LLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred E--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999998864
No 257
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=3e-27 Score=210.41 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=110.6
Q ss_pred cccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-cccccccccCC-
Q 029613 3 TVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNLGF- 79 (190)
Q Consensus 3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i~~- 79 (190)
+||+++|++++|+ ++.+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.+++.. +.. +.+...+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~-~p~~G~i~~~~~~~i~~-v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFEGEARPAPGIKVGY-LPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EecCCCCC
Confidence 4899999999998 788999999999999999999999999999999999987 6788998886431 110 0000000
Q ss_pred ChhhHHHHHHH------------------------------------------------HHHHHHHHHHcCc---ceeec
Q 029613 80 SAEDRTENIRR------------------------------------------------VGEVAKLFADAGL---ICIAS 108 (190)
Q Consensus 80 ~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~---~~~~~ 108 (190)
......+++.. ..++..++...++ ...+.
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 162 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT 162 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchh
Confidence 00000111100 0112223333333 22367
Q ss_pred ccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 109 LISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 109 ~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.||+||+|| .+||+++.+|+++ +|||||++||+...+.+.+.+++-
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vl--LLDEPt~~LD~~~~~~l~~~L~~~ 209 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDML--LLDEPTNHLDAESVAWLEQFLHDY 209 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEE--EEcCCCCcCChHHHHHHHHHHHhC
Confidence 799999999 6999999999999 999999999999999999999874
No 258
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.94 E-value=1.4e-27 Score=190.16 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=112.7
Q ss_pred ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh---CCCcEEEEcCccccc-cccc
Q 029613 4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS---RGKLSYILDGDNLRH-GLNK 75 (190)
Q Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~---~~~g~i~~~g~~~~~-~~~~ 75 (190)
.+.++|++++|.+ +++++++||++++|++++|+||||||||||+++|+|++ + +.+|.|.++|.++.. ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~-~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV-EGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc-CCCCCCceEEEECCEECChHHhcc
Confidence 4678999999964 57999999999999999999999999999999999987 5 789999999976532 1112
Q ss_pred ccCCChhh--------HHHHHHHH---------------HHHHH-HHHHcCcc----eeecccCccHHHH-HHHHHhCCC
Q 029613 76 NLGFSAED--------RTENIRRV---------------GEVAK-LFADAGLI----CIASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~~---------------~~~~~-~~~~~~~~----~~~~~lS~g~kqr-~iarall~~ 126 (190)
.++|.+++ ..+++... ..... .+...++. ..+..+|+||+|| .+||+++.+
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 22332221 12222110 01111 33333332 2357799999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||+..++.+.+.+++.
T Consensus 162 p~il--llDEP~~gLD~~~~~~~~~~l~~~ 189 (226)
T cd03234 162 PKVL--ILDEPTSGLDSFTALNLVSTLSQL 189 (226)
T ss_pred CCEE--EEeCCCcCCCHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999864
No 259
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=1e-27 Score=210.92 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=115.1
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccc-----ccccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHG-----LNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~-----~~~~i 77 (190)
+++++|++++|++.++++++||++.+|++++|+||||||||||+++|+|++++ +.+|.|.++|.++... .+..+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 47899999999988899999999999999999999999999999999997732 3689999999765320 11223
Q ss_pred CCChhh--------HHHHHHH----------------HHHHHHHHHHcCcce-----eecccCccHHHH-HHHHHhCCCC
Q 029613 78 GFSAED--------RTENIRR----------------VGEVAKLFADAGLIC-----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~ 127 (190)
+|.+++ ..+++.. ...+..++...++.. .+..||+||+|| .+||+++.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 343332 1111110 012333455555532 267899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+++.+++.
T Consensus 161 ~ll--lLDEPt~~LD~~~~~~l~~~l~~l 187 (500)
T TIGR02633 161 RLL--ILDEPSSSLTEKETEILLDIIRDL 187 (500)
T ss_pred CEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999888763
No 260
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-27 Score=210.24 Aligned_cols=147 Identities=15% Similarity=0.232 Sum_probs=113.1
Q ss_pred cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccCCCh
Q 029613 7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLGFSA 81 (190)
Q Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~~~~ 81 (190)
++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|.+
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-QKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 478999998888999999999999999999999999999999999977 7889999999976531 0112233332
Q ss_pred hh--------HHHHHH---------------HHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 82 ED--------RTENIR---------------RVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 82 ~~--------~~~~~~---------------~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
++ ..+++. ....+..++...++. ..+..||+||+|| .+||+++.+|+++ +
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ll--l 157 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIV--I 157 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEE--E
Confidence 22 111111 011233344455543 2367899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcC
Q 029613 134 MNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||||++||+..++.+++.+++.
T Consensus 158 LDEPt~~LD~~~~~~l~~~l~~l 180 (491)
T PRK10982 158 MDEPTSSLTEKEVNHLFTIIRKL 180 (491)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999888764
No 261
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-27 Score=193.32 Aligned_cols=151 Identities=22% Similarity=0.251 Sum_probs=111.5
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE------cCccccc----c
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL------DGDNLRH----G 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~------~g~~~~~----~ 72 (190)
++++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.+ +|.++.. .
T Consensus 9 ~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~-~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI-EIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCcCceeEcCEEEECCcccccCCHHH
Confidence 4789999999999999999999999999999999999999999999999977 566655444 4444321 1
Q ss_pred cccccCCChhh--------HHHHHHH------------H-HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHH
Q 029613 73 LNKNLGFSAED--------RTENIRR------------V-GEVAKLFADAGLI--------CIASLISPYRKDR-DACRA 122 (190)
Q Consensus 73 ~~~~i~~~~~~--------~~~~~~~------------~-~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iara 122 (190)
.+..++|.+++ ..+++.. . ..+...+...++. ..+..+|+||+|| .+||+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 11222332222 1122110 0 1122334444442 2367799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||...++.+.+.+.+-
T Consensus 168 l~~~P~ll--llDEPt~~LD~~~~~~l~~~l~~~ 199 (257)
T PRK14246 168 LALKPKVL--LMDEPTSMIDIVNSQAIEKLITEL 199 (257)
T ss_pred HHcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999764
No 262
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-27 Score=211.14 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=115.5
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~ 78 (190)
|++++|+++.|+ .+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. ..+..++
T Consensus 265 ~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 265 VFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-KRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 689999998764 4899999999999999999999999999999999987 7789999999976531 1112334
Q ss_pred CChhh-----------HHHHHHH---------------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHH
Q 029613 79 FSAED-----------RTENIRR---------------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DAC 120 (190)
Q Consensus 79 ~~~~~-----------~~~~~~~---------------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~ia 120 (190)
|.+++ ..+++.. -..+..++...++. ..+..||+||+|| .+|
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS 421 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH
Confidence 43332 1111110 01123445555553 2367899999999 599
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
|+++.+|+++ +|||||++||...++.+++.+++....|
T Consensus 422 ral~~~p~lL--lLDEPt~~LD~~~~~~l~~~l~~l~~~g 459 (510)
T PRK09700 422 KWLCCCPEVI--IFDEPTRGIDVGAKAEIYKVMRQLADDG 459 (510)
T ss_pred HHHhcCCCEE--EECCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence 9999999999 9999999999999999999988643334
No 263
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.94 E-value=1.6e-27 Score=210.87 Aligned_cols=150 Identities=21% Similarity=0.188 Sum_probs=115.4
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
-++++|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .++..+
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEehhhCCHHHHHhhe
Confidence 3688999999975 46999999999999999999999999999999999977 8899999999987643 233345
Q ss_pred CCChhh-------HHHHHHHH------HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRRV------GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
+|.+++ ..+++... .++...+...++. +....+||||||| ++||+++++|+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 555544 23332210 1111112211111 2245699999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ +|||||++||+...+.+++.+++.
T Consensus 479 il--ilDE~ts~lD~~~~~~i~~~l~~~ 504 (529)
T TIGR02857 479 LL--LLDEPTAHLDAETEALVTEALRAL 504 (529)
T ss_pred EE--EEeCcccccCHHHHHHHHHHHHHh
Confidence 99 999999999999999999999864
No 264
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1.8e-27 Score=194.87 Aligned_cols=148 Identities=19% Similarity=0.201 Sum_probs=112.2
Q ss_pred cccCcceecc--CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQE--SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~--~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++| +...+++++||++++|++++|+|+||||||||+++|+|++ + .+|.|+++|.++.. .++..++
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~-~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 5789999999 4567999999999999999999999999999999999987 4 67999999987632 1222334
Q ss_pred CChhh-------HHHHHHHH-----HHHHHHHHHcCcce----ee-----------cccCccHHHH-HHHHHhCCCCCeE
Q 029613 79 FSAED-------RTENIRRV-----GEVAKLFADAGLIC----IA-----------SLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~----~~-----------~~lS~g~kqr-~iarall~~~~il 130 (190)
|.+++ ..+++... .++...+...++.. .+ ..+|+||+|| .+||+++.+|+++
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 44332 12222110 12223333344322 12 2399999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+...+.+.+.+++-
T Consensus 161 --llDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 161 --LLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred --EEECccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999863
No 265
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=1.3e-27 Score=213.91 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=112.1
Q ss_pred cccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|+++.| ++.++++|+||++++|+.++|+|+||||||||+++|+|++ |.+|.|.++|.++.. .++..++|
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhheEE
Confidence 6788998655 5678999999999999999999999999999999999976 568999999987643 23444555
Q ss_pred Chhh-------HHHHHHH------------HH---HHHHHHHHc--Ccce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAED-------RTENIRR------------VG---EVAKLFADA--GLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~-------~~~~~~~------------~~---~~~~~~~~~--~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+|+ .++|+.. .. .+...+... |+.. -...|||||||| ++|||++++|+++
T Consensus 428 v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Il 507 (588)
T PRK11174 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL 507 (588)
T ss_pred ecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 5554 2222211 11 111122211 2221 245699999999 7999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+||||||+||....+.+.+.+++.
T Consensus 508 --iLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 508 --LLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred --EEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 266
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.94 E-value=2.3e-27 Score=211.49 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=116.2
Q ss_pred cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|+ +.++++|+||.+++|+.++|+|||||||||++++|.+++ ++.+|.|.+||.++.. .++..+++
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 68999999999 589999999999999999999999999999999999977 7889999999988753 34455555
Q ss_pred Chhh-------HHHHHH------------HH---HHHHHHHHHc--Cccee----ecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAED-------RTENIR------------RV---GEVAKLFADA--GLICI----ASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~-------~~~~~~------------~~---~~~~~~~~~~--~~~~~----~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+|+ ..+|+. +. ....+.+... |.... ...|||||||| ++|||++++|+++
T Consensus 408 V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~IL 487 (567)
T COG1132 408 VSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL 487 (567)
T ss_pred EcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5554 122221 11 1112222222 23222 45699999999 7999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHc
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+||||||++|.+..+.+.+.+++
T Consensus 488 --ILDEaTSalD~~tE~~I~~~l~~ 510 (567)
T COG1132 488 --ILDEATSALDTETEALIQDALKK 510 (567)
T ss_pred --EEeccccccCHHhHHHHHHHHHH
Confidence 99999999999999999988874
No 267
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.4e-27 Score=210.45 Aligned_cols=156 Identities=16% Similarity=0.249 Sum_probs=116.5
Q ss_pred cccccCcceeccC---ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cc
Q 029613 3 TVGNSTNIFWQES---PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LN 74 (190)
Q Consensus 3 ~~l~~~~l~~~~~---~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~ 74 (190)
+|++++|+++.|+ +..+++++||++++|++++|+|+||||||||+|+|+|++.++.+|.|.++|.++... .+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 3789999999993 467999999999999999999999999999999999987325899999998765310 11
Q ss_pred cccCCChhh-----------HHHHHH-----H------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHH
Q 029613 75 KNLGFSAED-----------RTENIR-----R------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DAC 120 (190)
Q Consensus 75 ~~i~~~~~~-----------~~~~~~-----~------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~ia 120 (190)
..++|.+++ ..+++. . ...+..++...++. ..+..||+||+|| .+|
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 223333322 111111 0 01233445555553 2367899999999 599
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
|+++.+|+++ +|||||++||+..++.+++.+++...+|
T Consensus 418 ~al~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l~~~g 455 (506)
T PRK13549 418 KCLLLNPKIL--ILDEPTRGIDVGAKYEIYKLINQLVQQG 455 (506)
T ss_pred HHHhhCCCEE--EEcCCCCCcCHhHHHHHHHHHHHHHHCC
Confidence 9999999999 9999999999999999998887643334
No 268
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=1.4e-27 Score=209.97 Aligned_cols=155 Identities=14% Similarity=0.231 Sum_probs=115.7
Q ss_pred ccccCcceecc---CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccc
Q 029613 4 VGNSTNIFWQE---SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNK 75 (190)
Q Consensus 4 ~l~~~~l~~~~---~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~ 75 (190)
|++++|+++.| ++..+++++||++.+|++++|+||||||||||+++|+|++.++.+|.|.++|.++.. ..+.
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 68999999999 346799999999999999999999999999999999998732478999999876531 1122
Q ss_pred ccCCChhhH-----------HHHHH-----------------HHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHH
Q 029613 76 NLGFSAEDR-----------TENIR-----------------RVGEVAKLFADAGLI-----CIASLISPYRKDR-DACR 121 (190)
Q Consensus 76 ~i~~~~~~~-----------~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iar 121 (190)
.++|.+++. .+++. .-..+..++..+++. ..+..||+||+|| .+||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 233333221 01100 001233445555553 2367899999999 6999
Q ss_pred HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+++.+|+++ +|||||++||...++.+++.+++....|
T Consensus 417 al~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l~~~g 453 (500)
T TIGR02633 417 MLLTNPRVL--ILDEPTRGVDVGAKYEIYKLINQLAQEG 453 (500)
T ss_pred HHhhCCCEE--EEcCCCCCcCHhHHHHHHHHHHHHHhCC
Confidence 999999999 9999999999999999998887643334
No 269
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=2.5e-27 Score=207.94 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=116.2
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEEEcCccccc-----ccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-GKLSYILDGDNLRH-----GLNKN 76 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~~~g~~~~~-----~~~~~ 76 (190)
+|++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|++ ++ .+|.|.++|.++.. ..+..
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCCCHHHHHhh
Confidence 4789999999998888999999999999999999999999999999999965 43 68999999865421 11223
Q ss_pred cCCChhhH----------HHHHH----------------HHHHHHHHHHHcCcce-----eecccCccHHHH-HHHHHhC
Q 029613 77 LGFSAEDR----------TENIR----------------RVGEVAKLFADAGLIC-----IASLISPYRKDR-DACRAML 124 (190)
Q Consensus 77 i~~~~~~~----------~~~~~----------------~~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall 124 (190)
++|.+++. .+.+. .-..+..++...++.. .+..||+||+|| .+||+++
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 44444321 01100 0012233444555533 367899999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
.+|+++ +|||||++||+..++.+.+.+++-.
T Consensus 418 ~~p~ll--lLDEPt~gLD~~~~~~l~~~L~~l~ 448 (490)
T PRK10938 418 KHPTLL--ILDEPLQGLDPLNRQLVRRFVDVLI 448 (490)
T ss_pred cCCCEE--EEcCccccCCHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999888743
No 270
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=3e-27 Score=191.73 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=111.1
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
+++++|++++|+. ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. .....+
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 5789999999976 57999999999999999999999999999999999987 7889999999976532 111222
Q ss_pred CCChhh-------HHHHHH--------HHH------HHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 78 GFSAED-------RTENIR--------RVG------EVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 78 ~~~~~~-------~~~~~~--------~~~------~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
+|.+++ ..+++. .+. .+...+... ++. ..+..+|+||+|| .+||+++.+|++
T Consensus 98 ~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 177 (257)
T cd03288 98 SIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI 177 (257)
T ss_pred EEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 332221 111110 000 011112111 111 1245799999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+...+.+++.+++-
T Consensus 178 l--llDEPt~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 178 L--IMDEATASIDMATENILQKVVMTA 202 (257)
T ss_pred E--EEeCCccCCCHHHHHHHHHHHHHh
Confidence 9 999999999999999999988864
No 271
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-27 Score=214.62 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=117.1
Q ss_pred cccccCcceeccCc-----------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 3 TVGNSTNIFWQESP-----------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 3 ~~l~~~~l~~~~~~-----------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
+||+++|+++.|+. ..+++++||++.+|++++|+|+||||||||+|+|+|++ ++.+|.|.++|.++..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV-ESQGGEIIFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCcEEEECCEECCc
Confidence 37899999999951 46999999999999999999999999999999999987 7889999999976532
Q ss_pred c-------cccccCCChhh----------HHHHHHH-------------HHHHHHHHHHcCcc-----eeecccCccHHH
Q 029613 72 G-------LNKNLGFSAED----------RTENIRR-------------VGEVAKLFADAGLI-----CIASLISPYRKD 116 (190)
Q Consensus 72 ~-------~~~~i~~~~~~----------~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~lS~g~kq 116 (190)
. .+..++|.+++ ..+++.. ...+..++...++. ..+..||+||+|
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 1 12234443332 1111110 01233455556653 247889999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
| .|||+++.+|+++ +|||||++||...+..+++.+++.
T Consensus 471 Rv~iAraL~~~p~ll--llDEPts~LD~~~~~~i~~ll~~l 509 (623)
T PRK10261 471 RICIARALALNPKVI--IADEAVSALDVSIRGQIINLLLDL 509 (623)
T ss_pred HHHHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9 6999999999999 999999999999999999988663
No 272
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=6e-27 Score=190.55 Aligned_cols=150 Identities=21% Similarity=0.217 Sum_probs=108.8
Q ss_pred CCcccccCcceeccCccc------------------------cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613 1 MATVGNSTNIFWQESPIG------------------------RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS 56 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~------------------------~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~ 56 (190)
|...++++|++|-||..+ -++++||+++.|||+.|+|.||||||||+|++++++ .
T Consensus 1 ~~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-e 79 (386)
T COG4175 1 MMVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-E 79 (386)
T ss_pred CCceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-C
Confidence 334577888888775422 258999999999999999999999999999999977 8
Q ss_pred CCCcEEEEcCcccccc-------c-ccccCCChhhH--------HHH------------HHHHHHHHHHHHHcCcc----
Q 029613 57 RGKLSYILDGDNLRHG-------L-NKNLGFSAEDR--------TEN------------IRRVGEVAKLFADAGLI---- 104 (190)
Q Consensus 57 ~~~g~i~~~g~~~~~~-------~-~~~i~~~~~~~--------~~~------------~~~~~~~~~~~~~~~~~---- 104 (190)
|++|.|.++|+++..- + +..++++.|.. .++ ..+-....+++...|+.
T Consensus 80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh
Confidence 9999999999986420 0 11122222210 011 01112233455556664
Q ss_pred eeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613 105 CIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA 153 (190)
Q Consensus 105 ~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~ 153 (190)
.++.+|||||+||. +|||++.+|+++ +||||||+|||--+....+-+
T Consensus 160 ~yp~eLSGGMqQRVGLARAla~~~~Il--LMDEaFSALDPLIR~~mQdeL 207 (386)
T COG4175 160 KYPNELSGGMQQRVGLARALANDPDIL--LMDEAFSALDPLIRTEMQDEL 207 (386)
T ss_pred cCcccccchHHHHHHHHHHHccCCCEE--EecCchhhcChHHHHHHHHHH
Confidence 35899999999996 999999999999 999999999998766554433
No 273
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.94 E-value=2.1e-27 Score=216.18 Aligned_cols=149 Identities=24% Similarity=0.263 Sum_probs=115.3
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.+||.++.. .++..++
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhccE
Confidence 688999999963 56999999999999999999999999999999999977 8899999999987653 3344556
Q ss_pred CChhh-------HHHHHHHH------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIRRV------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
+.+|+ ..+++... .++...+... |+. +....+||||||| ++||+++.+|++
T Consensus 543 ~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i 622 (694)
T TIGR03375 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI 622 (694)
T ss_pred EECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 66554 22332210 1111111111 111 1245699999999 799999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+...+.+++.+++.
T Consensus 623 l--iLDE~Ts~LD~~te~~i~~~l~~~ 647 (694)
T TIGR03375 623 L--LLDEPTSAMDNRSEERFKDRLKRW 647 (694)
T ss_pred E--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999888764
No 274
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=3.7e-27 Score=208.29 Aligned_cols=150 Identities=19% Similarity=0.181 Sum_probs=112.0
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEc------------------
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILD------------------ 65 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~------------------ 65 (190)
|+++|++++|+++.+++++||++.+|++++|+||||||||||+|+|+|++. ++.+|.|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 468999999988889999999999999999999999999999999999763 5788999886
Q ss_pred -----Ccccc-------c-------ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcce
Q 029613 66 -----GDNLR-------H-------GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLIC 105 (190)
Q Consensus 66 -----g~~~~-------~-------~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~~ 105 (190)
|.++. . ..+..++|.+++ ..+++.. ...+..++...++..
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 22110 0 011123332221 1122211 012334455555532
Q ss_pred ----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 106 ----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 106 ----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+..||+||+|| .+||+++.+|+++ +|||||++||+..++.+.+.+++.
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l 214 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLF--LADEPTGTLDPQTAKLVHNALEEA 214 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEE--EeeCCcccCCHHHHHHHHHHHHHH
Confidence 377899999999 6999999999999 999999999999999998888764
No 275
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.6e-27 Score=207.59 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=110.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-ccccccccc----C
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNL----G 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i----~ 78 (190)
||+++|++++|++.++++++||++.+|++++|+||||||||||+|+|+|++ ++.+|.|.+++.. +.. +.+.. .
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~~-~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL-EPSAGNVSLDPNERLGK-LRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EeccCCcCCC
Confidence 478999999999888999999999999999999999999999999999987 7788999988632 110 00000 0
Q ss_pred CChhhHHH--------------------------------HH---------HHHHHHHHHHHHcCcc-----eeecccCc
Q 029613 79 FSAEDRTE--------------------------------NI---------RRVGEVAKLFADAGLI-----CIASLISP 112 (190)
Q Consensus 79 ~~~~~~~~--------------------------------~~---------~~~~~~~~~~~~~~~~-----~~~~~lS~ 112 (190)
+...+... .. ..-..+..++...++. ..+..||+
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 00000000 00 0001233344555553 23677999
Q ss_pred cHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 113 YRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 113 g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
||+|| .+|++++.+|+++ +|||||++||+..++.+.+.+++
T Consensus 159 Gq~qrv~lA~aL~~~p~lL--lLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDIL--LLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred HHHHHHHHHHHHhcCCCEE--EEcCCCcccCHHHHHHHHHHHHh
Confidence 99999 6999999999999 99999999999999999999875
No 276
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.4e-27 Score=197.04 Aligned_cols=151 Identities=20% Similarity=0.137 Sum_probs=114.6
Q ss_pred ccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------
Q 029613 4 VGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------ 71 (190)
Q Consensus 4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------ 71 (190)
+++++|++++|. ...+|+++||++++|++++|+|+||||||||+++|+|+... +.+|.|.++|.++..
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 678999999995 35799999999999999999999999999999999997732 468999999988742
Q ss_pred ccccccCCChhh-------HHHHHHHH--------H-----HHHHHHHHcCc--------ceeecccCccHHHH-HHHHH
Q 029613 72 GLNKNLGFSAED-------RTENIRRV--------G-----EVAKLFADAGL--------ICIASLISPYRKDR-DACRA 122 (190)
Q Consensus 72 ~~~~~i~~~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iara 122 (190)
.++..++|.+++ ..+++... . .....+...++ ...+..||+||+|| .+|||
T Consensus 160 ~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 160 ELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred hhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 123334444433 22333210 0 01222333332 23467799999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||....+.+.+.+++.
T Consensus 240 l~~~p~Il--LLDEPts~LD~~~~~~i~~~i~~l 271 (329)
T PRK14257 240 IALEPEVL--LMDEPTSALDPIATAKIEELILEL 271 (329)
T ss_pred HHhCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999888754
No 277
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.7e-27 Score=212.22 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=114.0
Q ss_pred cccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc--------
Q 029613 3 TVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR-------- 70 (190)
Q Consensus 3 ~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~-------- 70 (190)
+||+++|++++|+. .++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|..+.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll-~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL-EQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCeEEEECCEEeccccccccc
Confidence 47999999999962 47999999999999999999999999999999999988 678899988774220
Q ss_pred -----c----cc-ccccCCChhh----------HHHHHHH-------------HHHHHHHHHHcCcc-------eeeccc
Q 029613 71 -----H----GL-NKNLGFSAED----------RTENIRR-------------VGEVAKLFADAGLI-------CIASLI 110 (190)
Q Consensus 71 -----~----~~-~~~i~~~~~~----------~~~~~~~-------------~~~~~~~~~~~~~~-------~~~~~l 110 (190)
. .. ...++|..++ ..+++.. ...+..++..+++. ..+..|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 0 00 1123333221 1122211 01233455566662 347889
Q ss_pred CccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 111 SPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 111 S~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
|+||+|| .||||++.+|+++ +|||||++||+..++.+.+.+++
T Consensus 170 SgGq~QRv~iA~AL~~~P~lL--llDEPt~~LD~~~~~~l~~ll~~ 213 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVL--IADEPTTALDVTIQAQILQLIKV 213 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEE--EEeCCCCccCHHHHHHHHHHHHH
Confidence 9999999 6999999999999 99999999999999888888776
No 278
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.94 E-value=2.9e-27 Score=210.77 Aligned_cols=149 Identities=21% Similarity=0.266 Sum_probs=113.7
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|.+ .++++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 678999999964 56899999999999999999999999999999999987 8899999999977642 2233445
Q ss_pred CChhh-------HHHHHHHH-------HHHH---------HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 79 FSAED-------RTENIRRV-------GEVA---------KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~-------~~~~---------~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
|.+++ ..+++... .++. ..+... |+. +....+||||||| ++||+++.+|+
T Consensus 410 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ 489 (571)
T TIGR02203 410 LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP 489 (571)
T ss_pred EEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 55544 22332210 0111 112211 121 1235699999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ +|||||++||....+.+++.+++.
T Consensus 490 il--lLDEpts~LD~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 490 IL--ILDEATSALDNESERLVQAALERL 515 (571)
T ss_pred EE--EEeCccccCCHHHHHHHHHHHHHH
Confidence 99 999999999999999999988763
No 279
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=3.9e-27 Score=208.15 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=114.3
Q ss_pred cccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc-Ccc---ccc--
Q 029613 3 TVGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD-GDN---LRH-- 71 (190)
Q Consensus 3 ~~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~-g~~---~~~-- 71 (190)
+|++++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++ |.+ +..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL-EPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEEecCCccccccccc
Confidence 37899999999942 56999999999999999999999999999999999987 7789999995 532 110
Q ss_pred -----ccccccCCChhh--------HHHHHHH-----------HHHHHHHHHHcCcc---------eeecccCccHHHH-
Q 029613 72 -----GLNKNLGFSAED--------RTENIRR-----------VGEVAKLFADAGLI---------CIASLISPYRKDR- 117 (190)
Q Consensus 72 -----~~~~~i~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~~~---------~~~~~lS~g~kqr- 117 (190)
..+..++|.+++ ..+++.. -..+..++...++. ..+..||+||+||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv 436 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence 011223443332 1222211 01233445555553 2367899999999
Q ss_pred HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+||+++.+|+++ +|||||++||+..++.+.+.+++.
T Consensus 437 ~laral~~~p~lL--llDEPt~~LD~~~~~~l~~~l~~l 473 (520)
T TIGR03269 437 ALAQVLIKEPRIV--ILDEPTGTMDPITKVDVTHSILKA 473 (520)
T ss_pred HHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 6999999999999 999999999999999999998753
No 280
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=1e-26 Score=184.18 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=104.7
Q ss_pred ccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------ccccc
Q 029613 6 NSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNKN 76 (190)
Q Consensus 6 ~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~~ 76 (190)
.+.|+.++|+ ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM-QTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCcccccccccccchhhcce
Confidence 4678999996 567999999999999999999999999999999999987 7789999999875421 01122
Q ss_pred cCCChhh-------HHHHHHHH-----HHHHHHHHHcCc---------------ceeecccCccHHHH-HHHHHhCCCCC
Q 029613 77 LGFSAED-------RTENIRRV-----GEVAKLFADAGL---------------ICIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 77 i~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~---------------~~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
++|.+++ ..+++... ..........++ ...+..+|+||+|| .+||+++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 3333322 11222110 011111111111 12356799999999 69999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHH
Q 029613 129 FIEVFMNMPLELCEARDPKGLYK 151 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~ 151 (190)
++ +|||||++||...++.+++
T Consensus 161 il--llDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 161 IV--FLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred EE--EEeCCccccCHHHHHHHHH
Confidence 99 9999999999999888876
No 281
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=6.9e-27 Score=216.62 Aligned_cols=149 Identities=22% Similarity=0.250 Sum_probs=114.1
Q ss_pred ccccCcceeccCcc---ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 4 VGNSTNIFWQESPI---GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 4 ~l~~~~l~~~~~~~---~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
.++++|++|+|+++ .+|+++||.+++|++++|+|+|||||||++++|.+++ +|.+|+|++||.++.. +++..
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy-dP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY-DPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCceEEEcCccchhcchHHHHhh
Confidence 47899999999865 5899999999999999999999999999999999977 8999999999998754 34555
Q ss_pred cCCChhh-------HHHHHHH---------HHHHH----------HHHHHcCc--ceeecccCccHHHH-HHHHHhCCCC
Q 029613 77 LGFSAED-------RTENIRR---------VGEVA----------KLFADAGL--ICIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 77 i~~~~~~-------~~~~~~~---------~~~~~----------~~~~~~~~--~~~~~~lS~g~kqr-~iarall~~~ 127 (190)
++.+.|+ ..+++.. +.+.+ .+.+.... .+-...|||||||| +||||++++|
T Consensus 429 iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P 508 (1228)
T KOG0055|consen 429 IGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP 508 (1228)
T ss_pred cCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCC
Confidence 5655554 1222211 11111 11111111 11245699999999 7999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
++| +||||||+||....+.+.+.+.+
T Consensus 509 ~IL--LLDEaTSaLD~~se~~Vq~ALd~ 534 (1228)
T KOG0055|consen 509 KIL--LLDEATSALDAESERVVQEALDK 534 (1228)
T ss_pred CEE--EecCcccccCHHHHHHHHHHHHH
Confidence 999 99999999999998877777765
No 282
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.94 E-value=3.7e-27 Score=210.97 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=113.3
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.++|.++.. ..+..++|
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 678999999965 57999999999999999999999999999999999977 7889999999977643 22334444
Q ss_pred Chhh-------HHHHHHH-------------HH--HHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAED-------RTENIRR-------------VG--EVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~-------~~~~~~~-------------~~--~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+++ .++++.. +. .+...+... ++. +....+||||+|| ++||+++++|+++
T Consensus 414 v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 414 VFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred EecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4443 1222211 00 111222211 221 1245699999999 7999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+...+.+++.+++.
T Consensus 494 --iLDEpts~LD~~t~~~i~~~l~~~ 517 (588)
T PRK13657 494 --ILDEATSALDVETEAKVKAALDEL 517 (588)
T ss_pred --EEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999888763
No 283
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=7.2e-27 Score=206.86 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=115.3
Q ss_pred cccccCcceeccC-----------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 3 TVGNSTNIFWQES-----------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 3 ~~l~~~~l~~~~~-----------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
+|++++|+++.|+ .+.+++++||++++|++++|+||||||||||+|+|+|++ + .+|.|+++|.++..
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHN 351 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEccc
Confidence 3789999999995 357999999999999999999999999999999999976 4 78999999976532
Q ss_pred c-------cccccCCChhh----------HHHHHHH--------------HHHHHHHHHHcCcc-----eeecccCccHH
Q 029613 72 G-------LNKNLGFSAED----------RTENIRR--------------VGEVAKLFADAGLI-----CIASLISPYRK 115 (190)
Q Consensus 72 ~-------~~~~i~~~~~~----------~~~~~~~--------------~~~~~~~~~~~~~~-----~~~~~lS~g~k 115 (190)
. .+..++|.+++ ..+++.. -..+..++..+++. ..+..||+||+
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 0 12223443332 1121111 01223445555553 23678999999
Q ss_pred HH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 116 DR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 116 qr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|| .+||+++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 432 qrv~la~al~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 471 (529)
T PRK15134 432 QRIAIARALILKPSLI--ILDEPTSSLDKTVQAQILALLKSL 471 (529)
T ss_pred HHHHHHHHHhCCCCEE--EeeCCccccCHHHHHHHHHHHHHH
Confidence 99 6999999999999 999999999999999999999864
No 284
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=209.69 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=112.8
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc----cccc----cc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL----RHGL----NK 75 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~----~~~~----~~ 75 (190)
||.++|++++|+++.+++++||++.+|++++|+||||||||||+|+|+|.+ ++.+|.|.+++... .... ..
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~pd~G~I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SADGGSYTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 578999999999999999999999999999999999999999999999976 78899999887531 1000 01
Q ss_pred ccCCChhhHH------H------------HHH----H---------HHHHHHHHHHcCcc-----eeecccCccHHHH-H
Q 029613 76 NLGFSAEDRT------E------------NIR----R---------VGEVAKLFADAGLI-----CIASLISPYRKDR-D 118 (190)
Q Consensus 76 ~i~~~~~~~~------~------------~~~----~---------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~ 118 (190)
.+++..+... . ... . -..+..++..+++. ..+..||||++|| .
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 1112111100 0 000 0 01223345555553 2367799999999 6
Q ss_pred HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|++++.+|+++ +|||||++||......+.+.+++-
T Consensus 160 LA~aL~~~P~lL--LLDEPtn~LD~~~~~~L~~~L~~~ 195 (638)
T PRK10636 160 LAQALICRSDLL--LLDEPTNHLDLDAVIWLEKWLKSY 195 (638)
T ss_pred HHHHHccCCCEE--EEcCCCCcCCHHHHHHHHHHHHhC
Confidence 999999999999 999999999999999999998863
No 285
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=1e-26 Score=209.74 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=112.2
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~ 78 (190)
||+++|++++|++..+++++||++.+|++++|+||||||||||+|+|+|++ ++.+|.|.+++..... ......+
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~p~~G~I~~~~~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-LLDDGRIIYEQDLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence 789999999999889999999999999999999999999999999999977 7889999988742110 0011111
Q ss_pred CChhhH--------------------------HHHHHHH----------------HHHHHHHHHcCcc--eeecccCccH
Q 029613 79 FSAEDR--------------------------TENIRRV----------------GEVAKLFADAGLI--CIASLISPYR 114 (190)
Q Consensus 79 ~~~~~~--------------------------~~~~~~~----------------~~~~~~~~~~~~~--~~~~~lS~g~ 114 (190)
+..+.. .+++... ..+..++..+++. ..+..||+|+
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGe 161 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGW 161 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHH
Confidence 111110 0000000 1122333444442 2367899999
Q ss_pred HHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 115 KDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 115 kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|| .+||+++.+|+++ ||||||++||....+.+.+.+++-
T Consensus 162 kqRv~LAraL~~~P~lL--LLDEPt~~LD~~~~~~L~~~L~~~ 202 (635)
T PRK11147 162 LRKAALGRALVSNPDVL--LLDEPTNHLDIETIEWLEGFLKTF 202 (635)
T ss_pred HHHHHHHHHHhcCCCEE--EEcCCCCccCHHHHHHHHHHHHhC
Confidence 999 6999999999999 999999999999999999999864
No 286
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=7.1e-27 Score=207.51 Aligned_cols=170 Identities=24% Similarity=0.225 Sum_probs=121.4
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
.++++|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|.+ ++.+|.|.++|.++.. ..+..+
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEehhhCCHHHHhhhe
Confidence 3788999999954 57999999999999999999999999999999999987 7889999999977542 122233
Q ss_pred CCChhh-------HHHHHHH---------H------HHHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRR---------V------GEVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~---------~------~~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
+|.+++ ..+++.. + ......+... ++. .....+|+||||| ++||+++.+|+
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 333332 1222210 0 0111222222 221 2256799999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc--cccccccCCCCCCce
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL--SIFSFCYYEKLIPRT 177 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~p~~ 177 (190)
++ +|||||++||....+.+.+.+++...++.+ -+.+. .+.+...|.
T Consensus 475 il--ilDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~-~~~~~~~d~ 522 (544)
T TIGR01842 475 LV--VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR-PSLLGCVDK 522 (544)
T ss_pred EE--EEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCC-HHHHHhCCE
Confidence 99 999999999999999999988764323333 44444 444444443
No 287
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.5e-27 Score=175.02 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=120.8
Q ss_pred CCcccccCcceecc-----Cc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC--ccccc
Q 029613 1 MATVGNSTNIFWQE-----SP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG--DNLRH 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~-----~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g--~~~~~ 71 (190)
|...+.++|++|+| ++ .++++++||+++.|||++|-|||||||||++|+|.+-+ .+++|.|++.- +.+..
T Consensus 1 m~~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 1 MPTPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEGQILVRHEGEWVDL 79 (235)
T ss_pred CCceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCceEEEEeCcchhhh
Confidence 66788999999998 23 36899999999999999999999999999999999977 78889888753 22210
Q ss_pred ----------ccccccCCChhhHHHH-----HH---------------HHHHHHHHHHHcCcce-----eecccCccHHH
Q 029613 72 ----------GLNKNLGFSAEDRTEN-----IR---------------RVGEVAKLFADAGLIC-----IASLISPYRKD 116 (190)
Q Consensus 72 ----------~~~~~i~~~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~-----~~~~lS~g~kq 116 (190)
--+..+||..+-.+-. +. .-.....++.++++-+ .++.+|||++|
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ 159 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQ 159 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhe
Confidence 0111234433321100 00 0012233444444421 27789999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccc
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSF 167 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (190)
| .|||.++-+-+++ +|||||+.||...+.-+.+++++.+..|...+-++
T Consensus 160 RVNIaRgfivd~pIL--LLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIF 209 (235)
T COG4778 160 RVNIARGFIVDYPIL--LLDEPTASLDATNRAVVVELIREAKARGAALVGIF 209 (235)
T ss_pred ehhhhhhhhccCceE--EecCCcccccccchHHHHHHHHHHHhcCceEEEee
Confidence 9 5999999999999 99999999999999999999999988886654444
No 288
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.2e-26 Score=173.58 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=124.5
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccc---cc----
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLN---KN---- 76 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~---~~---- 76 (190)
+++.+|++.+.+...++.++||.+.+||++.|.||||||||||+|+|+|++ .|.+|.|++++..+..... ..
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl-~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL-RPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc-CCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 688999999999999999999999999999999999999999999999988 7899999999877643111 11
Q ss_pred ---cCCChh-hHHHHHHHHHH---------HHHHHHHcCcc---ee-ecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 77 ---LGFSAE-DRTENIRRVGE---------VAKLFADAGLI---CI-ASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 77 ---i~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~---~~-~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
-++..+ ...|+++.... +.+.+..+++. +. +..||-||++| ++||-++..++++ +||||+
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW--iLDEP~ 158 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW--ILDEPF 158 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce--eecCcc
Confidence 111111 13344444322 22334444443 33 67799999999 6999999999999 999999
Q ss_pred hhhhhcChHHHHHHHH-cCCCCCcccccccccCCCCC
Q 029613 139 ELCEARDPKGLYKLAR-AGKIKGLLSIFSFCYYEKLI 174 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~ 174 (190)
++||...+..+-..+. +.+..|..-.++- -+.|..
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttH-q~l~~~ 194 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTH-QPLPIA 194 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecC-CccCCC
Confidence 9999999888777664 3455565555554 444443
No 289
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.94 E-value=7.3e-27 Score=207.56 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=113.8
Q ss_pred ccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 4 VGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
.++++|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCCCCHHHHhhheE
Confidence 3678999999964 56999999999999999999999999999999999977 7899999999987653 2344556
Q ss_pred CChhhHH-------HHH--HHHHHHHHHHHHcCccee---------ecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 79 FSAEDRT-------ENI--RRVGEVAKLFADAGLICI---------ASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 79 ~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~---------~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
+.+++.. ++. ..-..+...+...++... ...+||||+|| ++||+++.+|+++ +|||||+
T Consensus 401 ~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~il--ilDE~ts 478 (547)
T PRK10522 401 AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDIL--LLDEWAA 478 (547)
T ss_pred EEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE--EEECCCC
Confidence 6555421 110 000112223333333211 34699999999 7999999999999 9999999
Q ss_pred hhhhcChHHHHHHHH
Q 029613 140 LCEARDPKGLYKLAR 154 (190)
Q Consensus 140 ~ld~~~~~~~~~~~~ 154 (190)
+||+...+.+++.+.
T Consensus 479 ~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 479 DQDPHFRREFYQVLL 493 (547)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988887775
No 290
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.8e-27 Score=176.69 Aligned_cols=124 Identities=22% Similarity=0.281 Sum_probs=102.4
Q ss_pred cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHH
Q 029613 7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86 (190)
Q Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~ 86 (190)
++++++.|.+..++++++|++.+|++++|+|+||||||||+++|+|.+ ++..|.+.+++.++... ......
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~-~~~~G~i~~~~~~~~~~-------~~~~~~- 72 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL-KPTSGEILIDGKDIAKL-------PLEELR- 72 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccC-------CHHHHH-
Confidence 578999998888999999999999999999999999999999999987 67899999999766421 000000
Q ss_pred HHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 87 NIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
. ...+...+|+||+|| .++|+++.+|+++ +|||||++||.+.+..+++.+++-
T Consensus 73 ------------~---~i~~~~qlS~G~~~r~~l~~~l~~~~~i~--ilDEp~~~lD~~~~~~l~~~l~~~ 126 (157)
T cd00267 73 ------------R---RIGYVPQLSGGQRQRVALARALLLNPDLL--LLDEPTSGLDPASRERLLELLREL 126 (157)
T ss_pred ------------h---ceEEEeeCCHHHHHHHHHHHHHhcCCCEE--EEeCCCcCCCHHHHHHHHHHHHHH
Confidence 0 011112299999999 6999999999999 999999999999999999888763
No 291
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=1.5e-26 Score=196.74 Aligned_cols=146 Identities=20% Similarity=0.202 Sum_probs=112.3
Q ss_pred CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc----cccc----c---c-cc
Q 029613 8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD----NLRH----G---L-NK 75 (190)
Q Consensus 8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~----~~~~----~---~-~~ 75 (190)
.++.++|+...+++++||++++|++++|+|+||||||||+|+|+|++ ++.+|+|+++|+ ++.. . . +.
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 45677889899999999999999999999999999999999999977 788999999985 3211 0 0 12
Q ss_pred ccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 76 NLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 76 ~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.++|.+++ ..+++.. ......++...++.. .+..||+||+|| .+||+++.+|+++
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 23333332 2233221 112334555566643 467899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..+..+++.+.+.
T Consensus 187 --LlDEPts~LD~~~r~~l~~~L~~l 210 (382)
T TIGR03415 187 --LMDEPFSALDPLIRTQLQDELLEL 210 (382)
T ss_pred --EEECCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 292
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.94 E-value=1.3e-26 Score=206.75 Aligned_cols=149 Identities=22% Similarity=0.238 Sum_probs=113.5
Q ss_pred cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
++++|++++|+. ..+++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ..+..+
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 678999999964 56999999999999999999999999999999999987 7889999999977642 223344
Q ss_pred CCChhh-------HHHHHHHH------HHH---------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRRV------GEV---------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~------~~~---------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
+|.+++ ..+|+... .++ ...+... ++. +....+||||+|| .+||+++.+|+
T Consensus 417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ 496 (576)
T TIGR02204 417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496 (576)
T ss_pred eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 555544 22222210 011 1122221 221 2245699999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ +|||||++||+...+.+++.+++.
T Consensus 497 il--ilDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 497 IL--LLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred eE--EEeCcccccCHHHHHHHHHHHHHH
Confidence 99 999999999999999999888764
No 293
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.9e-26 Score=204.19 Aligned_cols=151 Identities=15% Similarity=0.061 Sum_probs=113.9
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccccc--CCC
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNL--GFS 80 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i--~~~ 80 (190)
++++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.+++..-..-+.+.. .+.
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~~~q~~~~~~~ 396 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPDSGTVKWSENANIGYYAQDHAYDFE 396 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEEEcccccccCC
Confidence 3789999999998888999999999999999999999999999999999977 7889999998743111011110 010
Q ss_pred h-hhHHHHHHHH-------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcCh
Q 029613 81 A-EDRTENIRRV-------GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDP 146 (190)
Q Consensus 81 ~-~~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~ 146 (190)
. ....+++... ..+..++...++. ..+..||+||+|| .+||+++.+|+++ +|||||++||...+
T Consensus 397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ll--lLDEPt~~LD~~~~ 474 (530)
T PRK15064 397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVL--VMDEPTNHMDMESI 474 (530)
T ss_pred CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHHHH
Confidence 0 0111111110 1233344555542 2478899999999 6999999999999 99999999999999
Q ss_pred HHHHHHHHcC
Q 029613 147 KGLYKLARAG 156 (190)
Q Consensus 147 ~~~~~~~~~~ 156 (190)
+.+.+.+++-
T Consensus 475 ~~l~~~l~~~ 484 (530)
T PRK15064 475 ESLNMALEKY 484 (530)
T ss_pred HHHHHHHHHC
Confidence 9999999874
No 294
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.6e-26 Score=196.60 Aligned_cols=170 Identities=21% Similarity=0.157 Sum_probs=122.0
Q ss_pred ccccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----ccccc
Q 029613 4 VGNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i 77 (190)
.++++|++|+|.+. ++++|+||++++||.++|+|+|||||||++..|+|.+ ++.+|+|.++|.++..- ++..+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i 414 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETI 414 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHH
Confidence 47899999999764 5999999999999999999999999999999999988 88999999999776431 11122
Q ss_pred CCChhh-------HHHHHHH------HHHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRR------VGEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
++..|. .++|++. -.++...++..++. +-...+||||+|| ++||+++++.+
T Consensus 415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap 494 (573)
T COG4987 415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494 (573)
T ss_pred hhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence 222221 1122110 01222233333322 2256699999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHc-CCCCCcccccccccCCCCCCce
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARA-GKIKGLLSIFSFCYYEKLIPRT 177 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~p~~ 177 (190)
++ +|||||.+||+...+++.+.+.+ .+=|++..+++. -..-++-|-
T Consensus 495 l~--lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHr-L~~le~~dr 541 (573)
T COG4987 495 LW--LLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHR-LRGLERMDR 541 (573)
T ss_pred eE--EecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecc-cccHhhcCE
Confidence 99 99999999999999999988865 222344455555 444444443
No 295
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=2.8e-26 Score=204.05 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=109.4
Q ss_pred cccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-cccccccccC-C
Q 029613 3 TVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNLG-F 79 (190)
Q Consensus 3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i~-~ 79 (190)
.|++++|++++|+ ++++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.+++.. +.. +.+... +
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~-v~Q~~~~~ 80 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFNGEARPAPGIKVGY-LPQEPQLD 80 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EeccCCCC
Confidence 3789999999998 778999999999999999999999999999999999977 7788998886531 110 000000 0
Q ss_pred ChhhHHHHHHH-----------------------------------H-------------HHHHHHHHHcCc---ceeec
Q 029613 80 SAEDRTENIRR-----------------------------------V-------------GEVAKLFADAGL---ICIAS 108 (190)
Q Consensus 80 ~~~~~~~~~~~-----------------------------------~-------------~~~~~~~~~~~~---~~~~~ 108 (190)
......+++.. + ..+...+...++ ...+.
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 160 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVT 160 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchh
Confidence 00000011000 0 011122233333 22467
Q ss_pred ccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 109 LISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 109 ~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.||+||+|| .+||+++.+|+++ +|||||++||+...+.+.+.+++-
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lL--LLDEPt~~LD~~~~~~l~~~L~~~ 207 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDML--LLDEPTNHLDAESVAWLEQHLQEY 207 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCChHHHHHHHHHHHhC
Confidence 899999999 6999999999999 999999999999999999998864
No 296
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=1.4e-26 Score=223.34 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=116.6
Q ss_pred cccCcceeccC---ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC------------------------
Q 029613 5 GNSTNIFWQES---PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR------------------------ 57 (190)
Q Consensus 5 l~~~~l~~~~~---~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~------------------------ 57 (190)
|+++||+|+|+ ..++|+++||++++|++++|+|+||||||||+++|.|++ ++
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~y-dp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFY-DLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhC-CCcccccccccccccccccccccccc
Confidence 67899999996 347999999999999999999999999999999999987 44
Q ss_pred ------------------------------CCcEEEEcCccccc----ccccccCCChhh-------HHHHHHHH-----
Q 029613 58 ------------------------------GKLSYILDGDNLRH----GLNKNLGFSAED-------RTENIRRV----- 91 (190)
Q Consensus 58 ------------------------------~~g~i~~~g~~~~~----~~~~~i~~~~~~-------~~~~~~~~----- 91 (190)
.+|.|.+||.++.. .++..++|++|+ .++++...
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at 1324 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDAT 1324 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCC
Confidence 58999999988753 355667777765 23333221
Q ss_pred -HHHHHHHHHcCc-----------c----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613 92 -GEVAKLFADAGL-----------I----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLAR 154 (190)
Q Consensus 92 -~~~~~~~~~~~~-----------~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~ 154 (190)
.++.......++ . +....|||||||| +||||++++|+++ +||||||+||....+.+.+.+.
T Consensus 1325 ~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~IL--LLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265 1325 REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKIL--LLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEeCcccccCHHHHHHHHHHHH
Confidence 111111111111 1 1245699999999 7999999999999 9999999999999999988887
Q ss_pred cC
Q 029613 155 AG 156 (190)
Q Consensus 155 ~~ 156 (190)
+.
T Consensus 1403 ~~ 1404 (1466)
T PTZ00265 1403 DI 1404 (1466)
T ss_pred HH
Confidence 64
No 297
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=1.3e-26 Score=210.92 Aligned_cols=149 Identities=20% Similarity=0.233 Sum_probs=114.9
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|++ ..+++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.+||.++.. .++..++
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEehhhCCHHHHHHhCe
Confidence 688999999953 56999999999999999999999999999999999977 7889999999987643 2344455
Q ss_pred CChhh-------HHHHHHHH------HHH---------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIRRV------GEV---------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~------~~~---------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
|.+++ ..+++... .++ ...+... |+. +....+||||+|| ++||+++.+|++
T Consensus 535 ~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i 614 (694)
T TIGR01846 535 VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI 614 (694)
T ss_pred EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 55544 22332210 111 1112111 221 1245699999999 799999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+...+.+++.+++.
T Consensus 615 l--ilDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 615 L--IFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred E--EEECCCcCCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999999864
No 298
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.93 E-value=2.1e-26 Score=183.97 Aligned_cols=133 Identities=23% Similarity=0.175 Sum_probs=99.1
Q ss_pred ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh--------hHHHHHHH-
Q 029613 20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE--------DRTENIRR- 90 (190)
Q Consensus 20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~--------~~~~~~~~- 90 (190)
++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..... ..+|.++ ...+++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~-~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-QPTSGGVILEGKQITEPGP-DRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCCh-hheEEecCcccCCCCCHHHHHHHH
Confidence 57899999999999999999999999999999987 7889999999976532100 0011111 11122111
Q ss_pred -------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613 91 -------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL 152 (190)
Q Consensus 91 -------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~ 152 (190)
...+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++||+..++.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--lLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVL--LLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEcCCCcCCCHHHHHHHHHH
Confidence 011233444455532 367799999999 6999999999999 99999999999999999988
Q ss_pred HHcC
Q 029613 153 ARAG 156 (190)
Q Consensus 153 ~~~~ 156 (190)
+++-
T Consensus 157 l~~~ 160 (230)
T TIGR01184 157 LMQI 160 (230)
T ss_pred HHHH
Confidence 8753
No 299
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.9e-26 Score=200.21 Aligned_cols=159 Identities=22% Similarity=0.243 Sum_probs=116.0
Q ss_pred ccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCC
Q 029613 6 NSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFS 80 (190)
Q Consensus 6 ~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~ 80 (190)
..+|+++.|+.. ++++++||++++|+.++|+|+||||||||+++|+|.+ ++..|+|.++|.+... ..++.+++.
T Consensus 322 ~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 322 SLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred eecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCccccccCHHHHHhHeeee
Confidence 445999999754 8999999999999999999999999999999999987 7899999999977643 233344444
Q ss_pred hhh-------HHHHHHH------HHHHHHHHHHcCcc----------e----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 81 AED-------RTENIRR------VGEVAKLFADAGLI----------C----IASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 81 ~~~-------~~~~~~~------~~~~~~~~~~~~~~----------~----~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
++. .++|+.. -.++.+.++..++. . -...+||||+|| ++|||++.+++++
T Consensus 401 ~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~-- 478 (559)
T COG4988 401 SQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL-- 478 (559)
T ss_pred CCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE--
Confidence 433 2333311 01222222222222 1 245599999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcC-CCCCccccccc
Q 029613 133 FMNMPLELCEARDPKGLYKLARAG-KIKGLLSIFSF 167 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~-~~~~~~~~~~~ 167 (190)
++||||++||.+..+.+.+.+.+. +-+.+.-+++.
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHr 514 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcC
Confidence 999999999999988887777653 22333344444
No 300
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=6.1e-26 Score=169.61 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=119.9
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----------ccc
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----------GLN 74 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----------~~~ 74 (190)
|+++++++.||..++|-|++|+...|+.+.++||||+|||||+|.|+- +.-+.+|+..+-+..+.. .++
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl-le~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL-LEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH-HhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 789999999999999999999999999999999999999999999985 557888988887654321 244
Q ss_pred cccCCChhhH--------HHHH-------------HHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 75 KNLGFSAEDR--------TENI-------------RRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 75 ~~i~~~~~~~--------~~~~-------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
.++|+..++. .+++ ....+..+++....+. .++..+|||++|| +||||+|.+|+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 4555555441 1111 0011223344444443 3477899999999 69999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
++ ++||||++||++-..++.+.+++..-.|.+
T Consensus 162 vl--lfdeptaaldpeitaqvv~iikel~~tgit 193 (242)
T COG4161 162 VL--LFDEPTAALDPEITAQIVSIIKELAETGIT 193 (242)
T ss_pred EE--eecCcccccCHHHHHHHHHHHHHHHhcCce
Confidence 99 999999999999999999999986655554
No 301
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.93 E-value=1.3e-26 Score=207.41 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=112.4
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|++ .++++++||++++|++++|+||||||||||+++|+|.+ ++.+|.|.++|.++.. ..+..++|
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 678999999975 57899999999999999999999999999999999977 7899999999977542 12233344
Q ss_pred Chhh-------HHHHHHH---------HHH------HHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAED-------RTENIRR---------VGE------VAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+++ ..+++.. +.. +...+... ++. .....+||||||| .+||+++.+|+++
T Consensus 414 v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~il 493 (585)
T TIGR01192 414 VFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493 (585)
T ss_pred EccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3333 1222211 000 11111111 111 2256699999999 7999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||....+.+++.+++.
T Consensus 494 --ilDEpts~LD~~~~~~i~~~l~~~ 517 (585)
T TIGR01192 494 --VLDEATSALDVETEARVKNAIDAL 517 (585)
T ss_pred --EEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 302
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.93 E-value=1.9e-26 Score=205.23 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=112.3
Q ss_pred cccCcceeccCcc-----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccc
Q 029613 5 GNSTNIFWQESPI-----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNK 75 (190)
Q Consensus 5 l~~~~l~~~~~~~-----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~ 75 (190)
++++|++++|++. ++++++||++++|++++|+||||||||||+++|+|.+ +|.+|.|.++|.++.. .++.
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHh
Confidence 6789999999752 5899999999999999999999999999999999977 8899999999987753 2334
Q ss_pred ccCCChhhH-------HHHHH---HHHHHHHHHHHcCccee----------ecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 76 NLGFSAEDR-------TENIR---RVGEVAKLFADAGLICI----------ASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 76 ~i~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~----------~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
.+++.+++. .++.. .-.++...+...++... ...+||||||| ++||+++.+|+++ +|
T Consensus 417 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~il--il 494 (555)
T TIGR01194 417 LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPIL--LF 494 (555)
T ss_pred hCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEE--EE
Confidence 455555441 11110 01122233344443321 24699999999 7999999999999 99
Q ss_pred eCCchhhhhcChHHHHHHH
Q 029613 135 NMPLELCEARDPKGLYKLA 153 (190)
Q Consensus 135 DEP~~~ld~~~~~~~~~~~ 153 (190)
||||++||++..+.+++.+
T Consensus 495 DE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 495 DEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred eCCccCCCHHHHHHHHHHH
Confidence 9999999999999988755
No 303
>PLN03211 ABC transporter G-25; Provisional
Probab=99.93 E-value=2.5e-26 Score=207.58 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=115.9
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEEcCcccccccccccCCChhh
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYILDGDNLRHGLNKNLGFSAED 83 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~~g~~~~~~~~~~i~~~~~~ 83 (190)
..+|++++|+++.+++++|+++++||+++|+||||||||||+++|+|.+ +++ +|+|.++|.++.......++|.+++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~-~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI-QGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEEEECCEECchhhccceEEECcc
Confidence 3567888998889999999999999999999999999999999999977 443 8999999987543222234444432
Q ss_pred --------HHHHHHH---------------HHHHHHHHHHcCcce---------eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 84 --------RTENIRR---------------VGEVAKLFADAGLIC---------IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 84 --------~~~~~~~---------------~~~~~~~~~~~~~~~---------~~~~lS~g~kqr-~iarall~~~~il 130 (190)
..+++.. ...+..++...++.. .+..+|+||||| .+|++++.+|+++
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 1222211 011233445555532 245699999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+|||||++||......+.+.+++...+|.+
T Consensus 229 --lLDEPtsgLD~~~~~~l~~~L~~l~~~g~T 258 (659)
T PLN03211 229 --ILDEPTSGLDATAAYRLVLTLGSLAQKGKT 258 (659)
T ss_pred --EEeCCCCCcCHHHHHHHHHHHHHHHhCCCE
Confidence 999999999999999999998864334544
No 304
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-26 Score=201.97 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=113.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~ 78 (190)
+++++|+++.+ ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++... .+..++
T Consensus 250 ~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 250 ILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-EKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-cCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 68899999874 46999999999999999999999999999999999977 78899999999765321 112233
Q ss_pred CChhhHH----------------HHHHH-------------HHHHHHHHHHcCc-----ceeecccCccHHHH-HHHHHh
Q 029613 79 FSAEDRT----------------ENIRR-------------VGEVAKLFADAGL-----ICIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 79 ~~~~~~~----------------~~~~~-------------~~~~~~~~~~~~~-----~~~~~~lS~g~kqr-~iaral 123 (190)
|.+++.. +++.. -..+...+...++ ...+..||+||+|| .+||++
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 406 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL 406 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH
Confidence 3332210 00100 0112223333333 22477899999999 599999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+.+|+++ +|||||++||...++.+++.+++....|
T Consensus 407 ~~~p~il--lLDEPt~gLD~~~~~~~~~~l~~l~~~~ 441 (491)
T PRK10982 407 LTQPEIL--MLDEPTRGIDVGAKFEIYQLIAELAKKD 441 (491)
T ss_pred hcCCCEE--EEcCCCcccChhHHHHHHHHHHHHHHCC
Confidence 9999999 9999999999999999999887643334
No 305
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=2.4e-26 Score=205.18 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=111.9
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|+. ..+++++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++|.++.. ..+..++
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 678899999964 56999999999999999999999999999999999987 7899999999987642 1223334
Q ss_pred CChhh-------HHHHHHHH------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIRRV------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
+.+++ ..+++... .++...+... |+. .....+|+||+|| .+||+++.+|++
T Consensus 393 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i 472 (569)
T PRK10789 393 VVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI 472 (569)
T ss_pred EEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 43332 22222110 0111111111 111 1245699999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+...+.+.+.+++.
T Consensus 473 l--llDEpts~LD~~~~~~i~~~l~~~ 497 (569)
T PRK10789 473 L--ILDDALSAVDGRTEHQILHNLRQW 497 (569)
T ss_pred E--EEECccccCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999998764
No 306
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.93 E-value=4.6e-26 Score=198.77 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=109.1
Q ss_pred ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC
Q 029613 4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~ 80 (190)
|++++|+++.|+. +.+|+++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.+...... ..+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~~i~~~--~~l~ 97 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAALIAIS--SGLN 97 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEeeeEEec--cccC
Confidence 6777788777765 46899999999999999999999999999999999987 7889999999865211000 0111
Q ss_pred hh-hHHHHHH-----------HH-HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613 81 AE-DRTENIR-----------RV-GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE 142 (190)
Q Consensus 81 ~~-~~~~~~~-----------~~-~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld 142 (190)
+. ...+++. .. ..+..++...++. ..+..||+||+|| .+||+++.+|+++ +|||||++||
T Consensus 98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LL--LLDEPTsgLD 175 (549)
T PRK13545 98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDIL--VIDEALSVGD 175 (549)
T ss_pred CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEE--EEECCcccCC
Confidence 10 1111110 00 1122233444442 2367899999999 6999999999999 9999999999
Q ss_pred hcChHHHHHHHHcC
Q 029613 143 ARDPKGLYKLARAG 156 (190)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (190)
+..++.+++.+++.
T Consensus 176 ~~sr~~LlelL~el 189 (549)
T PRK13545 176 QTFTKKCLDKMNEF 189 (549)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888764
No 307
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=2.4e-26 Score=224.44 Aligned_cols=150 Identities=13% Similarity=0.136 Sum_probs=119.6
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccC
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~ 78 (190)
+++++|++|+|++ +.+++++||++++||+++|+|+||||||||+|+|+|++ .+.+|.|.++|.++... .+..++
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll-~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT-TVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECcchHHHHhhhEE
Confidence 7899999999985 57999999999999999999999999999999999987 78999999999876421 233455
Q ss_pred CChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 79 FSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 79 ~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
|.++. ..+++... ..+..++...++.. .+..+|+||||| .+|+|++.+|+++ +
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL--L 2093 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV--L 2093 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEE--E
Confidence 55543 12222211 11223445555543 367899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcC
Q 029613 134 MNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||||++||+..++.+++.+++.
T Consensus 2094 LDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred EECCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 308
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.8e-25 Score=168.85 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=110.4
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-----ccc------
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-----LRH------ 71 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-----~~~------ 71 (190)
|++++.++++.|++....+++||++-|||+++|+|+||||||||+++|++.+ .|..|++.+..++ +..
T Consensus 5 PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 5 PLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred cceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 5889999999999999999999999999999999999999999999999999 7888887765321 110
Q ss_pred --ccccccCCChhh--------------HHHH--------HHHH-HHHHHHHHHcCc-----ceeecccCccHHHH-HHH
Q 029613 72 --GLNKNLGFSAED--------------RTEN--------IRRV-GEVAKLFADAGL-----ICIASLISPYRKDR-DAC 120 (190)
Q Consensus 72 --~~~~~i~~~~~~--------------~~~~--------~~~~-~~~~~~~~~~~~-----~~~~~~lS~g~kqr-~ia 120 (190)
-++.+-++..+. .-|. ...+ .....++++..+ .+.+..+||||+|| .||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA 163 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence 011111222211 0010 1111 122334444322 23588899999999 699
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
|.++..|.++ ||||||-+||......+.+.++.
T Consensus 164 RnLVt~PrLv--fMDEPTGGLDVSVQARLLDllrg 196 (258)
T COG4107 164 RNLVTRPRLV--FMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHhccCCceE--EecCCCCCcchhhHHHHHHHHHH
Confidence 9999999999 99999999999988887776654
No 309
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-25 Score=190.99 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=129.7
Q ss_pred cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|+ ++++++|+||.+++|+.++|+||||+||||++|+|.+.. +..+|.|.+||+++.. .++..+|.
T Consensus 538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCceEEEcCchHHHHHHHHHHHhcCc
Confidence 68899999996 678999999999999999999999999999999999976 8899999999999854 56777888
Q ss_pred ChhhH-------------------HHHHHHHHHHHHHHHHc---------CcceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAEDR-------------------TENIRRVGEVAKLFADA---------GLICIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~~-------------------~~~~~~~~~~~~~~~~~---------~~~~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
+|++. .+....-++.+.+.++. .+.+-...+|||+||| ++||++++.|.++
T Consensus 617 VPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 617 VPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred ccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence 88761 01111112222222211 1112355699999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCCCCCccccc--ccccCCCCCCceEEecCCcccc
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIF--SFCYYEKLIPRTCKKKISATTR 187 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~p~~~~~~~~~~~~ 187 (190)
+|||.||+||....+.+.+.+.+- -++.+.+- +. ..+-.+.|+++=-.++-|+
T Consensus 697 --lLDEATSALDT~tER~IQaaL~rl-ca~RTtIVvAHR-LSTivnAD~ILvi~~G~Iv 751 (790)
T KOG0056|consen 697 --LLDEATSALDTNTERAIQAALARL-CANRTTIVVAHR-LSTIVNADLILVISNGRIV 751 (790)
T ss_pred --EEcchhhhcCCccHHHHHHHHHHH-hcCCceEEEeee-ehheecccEEEEEeCCeEe
Confidence 999999999999988888777652 23334322 22 3444556655444444443
No 310
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=7.4e-26 Score=201.37 Aligned_cols=150 Identities=13% Similarity=0.057 Sum_probs=112.0
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-ccccccccc--CC
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNL--GF 79 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i--~~ 79 (190)
+|++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.+++.. +.. +.+.. -+
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~i~~-v~q~~~~~~ 398 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGTIKIGETVKLAY-VDQSRDALD 398 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEECCceEEEE-EeCCccccC
Confidence 3789999999998888999999999999999999999999999999999977 7788999885421 110 00000 00
Q ss_pred ChhhHHHHHHH----------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613 80 SAEDRTENIRR----------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA 143 (190)
Q Consensus 80 ~~~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~ 143 (190)
......+++.. -.....++...++. ..+..||+||+|| .+||+++.+|+++ +|||||++||.
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ll--lLDEPt~~LD~ 476 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVL--LLDEPTNDLDV 476 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEE--EEeCCCCCCCH
Confidence 00011111110 00122344555542 2367899999999 6999999999999 99999999999
Q ss_pred cChHHHHHHHHcC
Q 029613 144 RDPKGLYKLARAG 156 (190)
Q Consensus 144 ~~~~~~~~~~~~~ 156 (190)
..++.+.+.+++-
T Consensus 477 ~~~~~l~~~l~~~ 489 (552)
T TIGR03719 477 ETLRALEEALLEF 489 (552)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999999874
No 311
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=3.4e-26 Score=184.72 Aligned_cols=144 Identities=16% Similarity=0.195 Sum_probs=106.7
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCCh
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFSA 81 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~~ 81 (190)
+++|+++. .+++++||++++|++++|+|+||||||||+++|+|++ ++ +|+|.++|.++.. .....++|.+
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PG-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 57888885 3899999999999999999999999999999999976 44 8999999976532 1111223332
Q ss_pred hh--------HHHHHHH-----------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCC-------CCCeE
Q 029613 82 ED--------RTENIRR-----------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLP-------DSNFI 130 (190)
Q Consensus 82 ~~--------~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~-------~~~il 130 (190)
++ ..+++.. ...+..++...++. ..+..+|+||+|| .+||+++. +|+++
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ll 155 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLL 155 (248)
T ss_pred ccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEE
Confidence 22 1122111 01223344444543 2367899999999 69999997 67999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||+..++.+++.+++..
T Consensus 156 --llDEPt~~LD~~~~~~l~~~L~~~~ 180 (248)
T PRK03695 156 --LLDEPMNSLDVAQQAALDRLLSELC 180 (248)
T ss_pred --EEcCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643
No 312
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=8.6e-26 Score=201.09 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=111.6
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-ccccccccc-CC-C
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNL-GF-S 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i-~~-~ 80 (190)
|++++|+++.|+++.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.+++.. +.. +.+.. .+ .
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~-v~q~~~~~~~ 401 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE-QPDSGTIKIGETVKLAY-VDQSRDALDP 401 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEE-EeCchhhcCC
Confidence 789999999999888999999999999999999999999999999999977 7889999885421 110 00000 00 0
Q ss_pred hhhHHHHHHH----------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613 81 AEDRTENIRR----------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 81 ~~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~ 144 (190)
.....+++.. -.....++..+++. ..+..||+||+|| .+||+++.+|+++ +|||||++||..
T Consensus 402 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--lLDEPt~~LD~~ 479 (556)
T PRK11819 402 NKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL--LLDEPTNDLDVE 479 (556)
T ss_pred CCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHH
Confidence 0011111110 00112344455542 2367899999999 6999999999999 999999999999
Q ss_pred ChHHHHHHHHcC
Q 029613 145 DPKGLYKLARAG 156 (190)
Q Consensus 145 ~~~~~~~~~~~~ 156 (190)
.++.+++.+++-
T Consensus 480 ~~~~l~~~l~~~ 491 (556)
T PRK11819 480 TLRALEEALLEF 491 (556)
T ss_pred HHHHHHHHHHhC
Confidence 999999999874
No 313
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.93 E-value=5.9e-26 Score=181.28 Aligned_cols=136 Identities=19% Similarity=0.198 Sum_probs=101.0
Q ss_pred cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC----CCcEEEEcCcccccc-c-ccccCCChhhH--------
Q 029613 19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR----GKLSYILDGDNLRHG-L-NKNLGFSAEDR-------- 84 (190)
Q Consensus 19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~----~~g~i~~~g~~~~~~-~-~~~i~~~~~~~-------- 84 (190)
+++++||++++|++++|+||||||||||+++|+|++ ++ .+|.|.++|.++... . ...++|.+++.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 478999999999999999999999999999999987 55 799999999765321 1 11223322221
Q ss_pred --HHHHH----H--------HHHHHHHHHHcCcc-------eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613 85 --TENIR----R--------VGEVAKLFADAGLI-------CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE 142 (190)
Q Consensus 85 --~~~~~----~--------~~~~~~~~~~~~~~-------~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld 142 (190)
.+++. . ...+..++...++. ..+..+|+||+|| .+||+++.+|+++ +|||||++||
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vl--lLDEPt~~LD 157 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFL--IADEPTTDLD 157 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEE--EEcCCccccC
Confidence 01110 0 01133344445543 2367799999999 6999999999999 9999999999
Q ss_pred hcChHHHHHHHHcCC
Q 029613 143 ARDPKGLYKLARAGK 157 (190)
Q Consensus 143 ~~~~~~~~~~~~~~~ 157 (190)
...++.+++.+++..
T Consensus 158 ~~~~~~l~~~l~~~~ 172 (230)
T TIGR02770 158 VVNQARVLKLLRELR 172 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888643
No 314
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=6.3e-26 Score=199.67 Aligned_cols=145 Identities=18% Similarity=0.245 Sum_probs=110.4
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~ 78 (190)
+++++|+++ .+++++||++.+|++++|+||||||||||+++|+|++ ++.+|+|.++|.++... .+..++
T Consensus 257 ~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 257 RLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL-PRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred EEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 567788874 4799999999999999999999999999999999987 77899999999765321 122344
Q ss_pred CChhh-----------HHHHHHH------------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHh
Q 029613 79 FSAED-----------RTENIRR------------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 79 ~~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iaral 123 (190)
|.+++ ..+++.. -..+..++...++. ..+..||+||+|| .+||++
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 43332 1111110 01233445555552 2367899999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||+..++.+++.+++-
T Consensus 411 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~ 441 (501)
T PRK10762 411 MTRPKVL--ILDEPTRGVDVGAKKEIYQLINQF 441 (501)
T ss_pred hhCCCEE--EEcCCCCCCCHhHHHHHHHHHHHH
Confidence 9999999 999999999999999999998874
No 315
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=1.1e-25 Score=203.10 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=111.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-ccccc-CCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNL-GFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i-~~~~ 81 (190)
+++++|++++|++.++++++||++.+|++++|+||||||||||+|+|+|.+ ++.+|.|.+ |.++.-. +.+.. .+.+
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~-~~~~~i~y~~q~~~~l~~ 396 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHC-GTKLEVAYFDQHRAELDP 396 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEE-CCCcEEEEEeCcccccCC
Confidence 689999999999888999999999999999999999999999999999977 788999988 4332110 00000 0100
Q ss_pred -hhHHHHHHH----------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613 82 -EDRTENIRR----------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 82 -~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~ 144 (190)
....+++.. ...+..++..+++. ..+..||+||||| .+|++++.+|+++ +|||||++||..
T Consensus 397 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL--lLDEPt~~LD~~ 474 (635)
T PRK11147 397 EKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL--ILDEPTNDLDVE 474 (635)
T ss_pred CCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHH
Confidence 011111110 11223344444442 2367899999999 6999999999999 999999999999
Q ss_pred ChHHHHHHHHcC
Q 029613 145 DPKGLYKLARAG 156 (190)
Q Consensus 145 ~~~~~~~~~~~~ 156 (190)
.++.+.+.+++-
T Consensus 475 ~~~~l~~~l~~~ 486 (635)
T PRK11147 475 TLELLEELLDSY 486 (635)
T ss_pred HHHHHHHHHHhC
Confidence 999999998873
No 316
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=1.7e-25 Score=180.51 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=96.2
Q ss_pred cccccccccccC-----CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccC-CChhhHHHHHHH
Q 029613 17 IGRLERQKLLNQ-----KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLG-FSAEDRTENIRR 90 (190)
Q Consensus 17 ~~~l~~~sl~i~-----~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~-~~~~~~~~~~~~ 90 (190)
.+.+++++|++. +|++++|+||||||||||+++|+|++ ++.+|.|.++|..+.... +... +......+++..
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~~i~~~~-q~~~~~~~~tv~e~l~~ 84 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELDTVSYKP-QYIKADYEGTVRDLLSS 84 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCceEEEec-ccccCCCCCCHHHHHHH
Confidence 345666666664 79999999999999999999999977 788999999986442110 0100 000011122211
Q ss_pred H--------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 91 V--------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 91 ~--------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
. .....++...++. ..+..||+||+|| .+||+++.+|+++ +|||||++||...+..+.+.+++-
T Consensus 85 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~ 161 (246)
T cd03237 85 ITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIY--LLDEPSAYLDVEQRLMASKVIRRF 161 (246)
T ss_pred HhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 0 0122334444443 2367799999999 6999999999999 999999999999999999888763
No 317
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=2.2e-25 Score=180.76 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=106.6
Q ss_pred CcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-----------EcCcccccc---
Q 029613 8 TNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-----------LDGDNLRHG--- 72 (190)
Q Consensus 8 ~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-----------~~g~~~~~~--- 72 (190)
.+++++|+.. .+++++|+ +++|++++|+||||||||||+++|+|++ ++.+|.|. ++|.++...
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKL-KPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 5799999765 59999994 9999999999999999999999999987 78899985 677665321
Q ss_pred -ccc--ccCCChhh-----------HHHHHH---HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 73 -LNK--NLGFSAED-----------RTENIR---RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 73 -~~~--~i~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+. .+++.++. ...++. .-.....++...++.. .+..+|+||+|| .+||+++.+|+++
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 000 11111110 111110 0122344455555532 366799999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||...++.+++.+++.
T Consensus 162 --llDEPts~LD~~~~~~l~~~l~~l 185 (255)
T cd03236 162 --FFDEPSSYLDIKQRLNAARLIREL 185 (255)
T ss_pred --EEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999888888764
No 318
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=6.9e-26 Score=189.49 Aligned_cols=148 Identities=19% Similarity=0.258 Sum_probs=113.0
Q ss_pred ccccCcceeccC-----------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-
Q 029613 4 VGNSTNIFWQES-----------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~-----------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~- 71 (190)
+++.+++...|. ...+++++||++++|+.++|+|+||||||||.++|.+++ + ..|.|.|+|+++..
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-~-s~G~I~F~G~~i~~~ 353 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-P-SQGEIRFDGQDIDGL 353 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-C-cCceEEECCcccccc
Confidence 578888887762 145789999999999999999999999999999999987 3 34999999988742
Q ss_pred ------cccccc---------CCChhh-H----HH----------HHHHHHHHHHHHHHcCcc-----eeecccCccHHH
Q 029613 72 ------GLNKNL---------GFSAED-R----TE----------NIRRVGEVAKLFADAGLI-----CIASLISPYRKD 116 (190)
Q Consensus 72 ------~~~~~i---------~~~~~~-~----~~----------~~~~~~~~~~~~~~~~~~-----~~~~~lS~g~kq 116 (190)
+++..+ ++++.- . .| ...+...+...+...|+. .++.++||||||
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ 433 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ 433 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence 111111 111110 0 00 012233455666677664 469999999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
| +||||++.+|+++ +||||||+||...+.++.+.+++
T Consensus 434 RIAIARAliLkP~~i--~LDEPTSALD~SVQaQvv~LLr~ 471 (534)
T COG4172 434 RIAIARALILKPELI--LLDEPTSALDRSVQAQVLDLLRD 471 (534)
T ss_pred HHHHHHHHhcCCcEE--EecCCchHhhHHHHHHHHHHHHH
Confidence 9 7999999999999 99999999999999998888876
No 319
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=8.7e-26 Score=199.22 Aligned_cols=145 Identities=14% Similarity=0.190 Sum_probs=110.2
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~ 78 (190)
|++++|+++ .+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... .+..++
T Consensus 268 ~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 268 VLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred eEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 678888874 2699999999999999999999999999999999977 77899999999765321 112344
Q ss_pred CChhh-----------HHHHHHH--------------H-HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCC
Q 029613 79 FSAED-----------RTENIRR--------------V-GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 79 ~~~~~-----------~~~~~~~--------------~-~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~ 126 (190)
|.+++ ..+++.. . ..+..++..+++. ..+..||+||+|| .+||+++.+
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~ 421 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEAS 421 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhC
Confidence 44332 1111100 0 1123344555553 2367899999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||...++.+++.+++.
T Consensus 422 p~lL--lLDEPt~gLD~~~~~~l~~~l~~l 449 (510)
T PRK15439 422 PQLL--IVDEPTRGVDVSARNDIYQLIRSI 449 (510)
T ss_pred CCEE--EECCCCcCcChhHHHHHHHHHHHH
Confidence 9999 999999999999999999998864
No 320
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=191.86 Aligned_cols=156 Identities=27% Similarity=0.267 Sum_probs=124.3
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----ccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i 77 (190)
.+.++++++.-.+ +++++++||++.+|+.++|+||||||||||+|+|.|.+ ++.+|.|++||-++..+ +-..+
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhhcCCHHHhcccc
Confidence 4678888886643 57999999999999999999999999999999999998 88999999999888653 45568
Q ss_pred CCChhh-------HHHHHHHHHH------H---------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRRVGE------V---------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~~~------~---------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
||.+|+ ..+|+.++.+ + .++...+ |.. +-...||+||||| .+|||+..+|.
T Consensus 413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 899887 3566665531 1 1111111 111 1256799999999 69999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
++ +||||-++||......+.+.+.+-+..|-+
T Consensus 493 lv--VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~ 524 (580)
T COG4618 493 LV--VLDEPNSNLDSEGEAALAAAILAAKARGGT 524 (580)
T ss_pred EE--EecCCCCCcchhHHHHHHHHHHHHHHcCCE
Confidence 99 999999999999999999988876666644
No 321
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.92 E-value=9.3e-26 Score=203.93 Aligned_cols=157 Identities=21% Similarity=0.240 Sum_probs=120.1
Q ss_pred CCcccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----
Q 029613 1 MATVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---- 72 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---- 72 (190)
|.+|++++|++++|++ ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|++.++|+++...
T Consensus 1 ~~~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-KPTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred CCcEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEcCcCCHHH
Confidence 7778999999999963 46999999999999999999999999999999999987 78899999999875420
Q ss_pred c----ccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613 73 L----NKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM 123 (190)
Q Consensus 73 ~----~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral 123 (190)
. +..++|.+++ ..+++.. -......+...++.. .+..+|+||+|| .+||++
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 0 1223333322 1222211 112233444455433 367799999999 699999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+.+|+++ +|||||++||...++.+.+.+++.+..+
T Consensus 160 ~~~P~lL--llDEP~~gLD~~s~~~l~~ll~~l~~~g 194 (648)
T PRK10535 160 MNGGQVI--LADEPTGALDSHSGEEVMAILHQLRDRG 194 (648)
T ss_pred hcCCCEE--EEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999 9999999999999999999987643334
No 322
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-25 Score=201.86 Aligned_cols=149 Identities=16% Similarity=0.082 Sum_probs=112.0
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc-ccccccccc--cCCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD-NLRHGLNKN--LGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~-~~~~~~~~~--i~~~ 80 (190)
+|+++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|.+ ++.+|.|.+++. .+.. +.+. ..+.
T Consensus 312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~~~igy-~~Q~~~~~l~ 389 (638)
T PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLAKGIKLGY-FAQHQLEFLR 389 (638)
T ss_pred eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCCEEEEE-ecCcchhhCC
Confidence 689999999999888999999999999999999999999999999999987 788999988642 1210 0000 0011
Q ss_pred hh-hHHHHHHH------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613 81 AE-DRTENIRR------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK 147 (190)
Q Consensus 81 ~~-~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~ 147 (190)
+. ...+.+.. -..+..++..+++. ..+..||||++|| .+|++++.+|+++ +|||||++||...++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL--lLDEPt~~LD~~~~~ 467 (638)
T PRK10636 390 ADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL--LLDEPTNHLDLDMRQ 467 (638)
T ss_pred ccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHHHHH
Confidence 10 11111110 01233344444442 2477899999999 6999999999999 999999999999999
Q ss_pred HHHHHHHcC
Q 029613 148 GLYKLARAG 156 (190)
Q Consensus 148 ~~~~~~~~~ 156 (190)
.+.+.+++-
T Consensus 468 ~l~~~L~~~ 476 (638)
T PRK10636 468 ALTEALIDF 476 (638)
T ss_pred HHHHHHHHc
Confidence 999999873
No 323
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.5e-25 Score=185.04 Aligned_cols=154 Identities=58% Similarity=0.967 Sum_probs=143.8
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA 107 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (190)
-+|..+|++|.||+||||+.-+|...+...|..-+.+||+++++++..++||+++++.++++++++++.+|.+.|+..+.
T Consensus 48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcit 127 (627)
T KOG4238|consen 48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCIT 127 (627)
T ss_pred ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeee
Confidence 46889999999999999999999998866566667899999999999999999999999999999999999999999999
Q ss_pred cccCccHHHHHHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613 108 SLISPYRKDRDACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI 182 (190)
Q Consensus 108 ~~lS~g~kqr~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~ 182 (190)
+.+|+.++.|.-||.+.... +|+||+.|.|+..|++|+++++|+.++.|+|+|++|+++. ||.|+.|++++|.-
T Consensus 128 sfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~-ye~pe~~e~vl~t~ 203 (627)
T KOG4238|consen 128 SFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSD-YEKPETPERVLKTN 203 (627)
T ss_pred hhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccc-cCCCCChhHHhhcC
Confidence 99999999999999988766 6789999999999999999999999999999999999999 99999999988754
No 324
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=2.3e-25 Score=206.55 Aligned_cols=148 Identities=20% Similarity=0.224 Sum_probs=115.0
Q ss_pred cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
++++|++|+|+. +++++|+||++++|+.++|+|||||||||...+|.+.+ +|..|.|.+||.++.. .++.++
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY-dp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY-DPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeEEECCcccccCCHHHHHHhc
Confidence 689999999975 45899999999999999999999999999999999977 8899999999998754 355566
Q ss_pred CCChhh-------HHHHHHHH------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRRV------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
+++.|+ .+||+..- .++.+..... |.. +....|||||||| +||||++++|+
T Consensus 1067 ~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred ceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCC
Confidence 666554 23333221 1111111111 111 2367899999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+| +|||.||+||.+..+-+.+.+.+
T Consensus 1147 IL--LLDEATSALDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1147 IL--LLDEATSALDSESERVVQEALDR 1171 (1228)
T ss_pred ee--eeeccchhhhhhhHHHHHHHHHH
Confidence 99 99999999999987777777665
No 325
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=1.4e-25 Score=216.53 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=113.1
Q ss_pred cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc-Cccccc----ccccc
Q 029613 5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD-GDNLRH----GLNKN 76 (190)
Q Consensus 5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~-g~~~~~----~~~~~ 76 (190)
|+++|++++|++ .++++++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++ |.++.. .++..
T Consensus 383 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred EEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 688999999975 36999999999999999999999999999999999987 8899999994 565532 23444
Q ss_pred cCCChhh-------HHHHHHHH----------------------------------------------------------
Q 029613 77 LGFSAED-------RTENIRRV---------------------------------------------------------- 91 (190)
Q Consensus 77 i~~~~~~-------~~~~~~~~---------------------------------------------------------- 91 (190)
+++.+++ ..+++..-
T Consensus 462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 5555544 22222210
Q ss_pred -----HHHHHHHHHcCc---------------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613 92 -----GEVAKLFADAGL---------------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLY 150 (190)
Q Consensus 92 -----~~~~~~~~~~~~---------------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~ 150 (190)
.++...+...++ ...+..|||||||| +||||++.+|+++ +|||||++||+...+.+.
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~IL--lLDEpTSaLD~~se~~i~ 619 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL--ILDEATSSLDNKSEYLVQ 619 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEeCcccccCHHHHHHHH
Confidence 011111111111 12256799999999 6999999999999 999999999999999999
Q ss_pred HHHHcC
Q 029613 151 KLARAG 156 (190)
Q Consensus 151 ~~~~~~ 156 (190)
+.+++.
T Consensus 620 ~~L~~~ 625 (1466)
T PTZ00265 620 KTINNL 625 (1466)
T ss_pred HHHHHH
Confidence 888864
No 326
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.7e-25 Score=172.65 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=112.3
Q ss_pred ccccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc-----cccc
Q 029613 4 VGNSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG-----LNKN 76 (190)
Q Consensus 4 ~l~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~-----~~~~ 76 (190)
||+++|++.+-.++ ++|+++|+++++||+++|+||||||||||+++|+|.- +...+|.|.|+|+++..- ++..
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 78999999999885 9999999999999999999999999999999999964 256899999999997531 1111
Q ss_pred cCCChhh--------HHHHHH---------------HHHHHHHHHHHcCcce------eecccCccHHHH-HHHHHhCCC
Q 029613 77 LGFSAED--------RTENIR---------------RVGEVAKLFADAGLIC------IASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 77 i~~~~~~--------~~~~~~---------------~~~~~~~~~~~~~~~~------~~~~lS~g~kqr-~iarall~~ 126 (190)
+.+..|. ....++ ....+...+...++.. ...-+|||+|+| +++..++.+
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~le 162 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLE 162 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcC
Confidence 1111111 011111 1112222233333322 234599999999 799999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
|++. +||||-|+||--..+.+.+-+..-+-+|
T Consensus 163 Pkl~--ILDE~DSGLDIdalk~V~~~i~~lr~~~ 194 (251)
T COG0396 163 PKLA--ILDEPDSGLDIDALKIVAEGINALREEG 194 (251)
T ss_pred CCEE--EecCCCcCccHHHHHHHHHHHHHHhcCC
Confidence 9999 9999999999888777776666544344
No 327
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=3.3e-25 Score=180.56 Aligned_cols=134 Identities=18% Similarity=0.123 Sum_probs=96.3
Q ss_pred ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCCh-hhHHHHHHH------
Q 029613 18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSA-EDRTENIRR------ 90 (190)
Q Consensus 18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~-~~~~~~~~~------ 90 (190)
.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|...... ...++.. ....+++..
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~~~~~--~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVGKVDRNGEVSVIA--ISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEeEEe--cccCCCCCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999987 78899999988521100 0001100 001111110
Q ss_pred -----H-HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 91 -----V-GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 91 -----~-~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
. ..+..++...++.. .+..+|+||+|| .+|++++.+|+++ +|||||++||+..++.+++.+.+-
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iL--lLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDIL--VIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEE--EEeCccccCCHHHHHHHHHHHHHH
Confidence 0 01112222333322 367799999999 6999999999999 999999999999999998888764
No 328
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=1.2e-25 Score=219.64 Aligned_cols=151 Identities=15% Similarity=0.185 Sum_probs=119.9
Q ss_pred ccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccC
Q 029613 4 VGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~ 78 (190)
.|+++|++|.|+ ++.+++++||++.+|++++|+||||||||||+++|+|++ +|.+|++.++|.++... .+..++
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-PPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-CCCceEEEECCEECcchHHHHhhcEE
Confidence 578999999995 578999999999999999999999999999999999987 78899999999876421 223344
Q ss_pred CChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 79 FSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 79 ~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
+.+++ ..+++... .++..++...++.. .+..||+||||| .+|+|++.+|+++ +
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVL--L 1084 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV--V 1084 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE--E
Confidence 44432 12222111 12334555666543 377899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcCC
Q 029613 134 MNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
|||||++||+..++.+++.+++.+
T Consensus 1085 LDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998753
No 329
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=2.7e-25 Score=198.72 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=109.0
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCCh-
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSA- 81 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~- 81 (190)
++++++|++++|++. .++++||++++||+++|+||||||||||+|+|+|++ ++.+|.|.++ ..+.. ..+......
T Consensus 339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~-~p~~G~I~~~-~~i~y-~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEGEVDPE-LKISY-KPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEe-eeEEE-ecccccCCCC
Confidence 368999999999865 489999999999999999999999999999999987 7788988875 11110 000000000
Q ss_pred hhHHHHHHHH-------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613 82 EDRTENIRRV-------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGL 149 (190)
Q Consensus 82 ~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~ 149 (190)
....+++... .....++..+++. ..+..||+||+|| ++||+++.+|+++ +|||||++||...+..+
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~ll--LLDEPt~~LD~~~~~~l 492 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLY--LLDEPSAHLDVEQRLAV 492 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEeCCccCCCHHHHHHH
Confidence 0111111110 0123344455543 2377899999999 6999999999999 99999999999999999
Q ss_pred HHHHHcC
Q 029613 150 YKLARAG 156 (190)
Q Consensus 150 ~~~~~~~ 156 (190)
.+.+++-
T Consensus 493 ~~~l~~l 499 (590)
T PRK13409 493 AKAIRRI 499 (590)
T ss_pred HHHHHHH
Confidence 9988863
No 330
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.92 E-value=2.5e-25 Score=201.43 Aligned_cols=149 Identities=14% Similarity=0.072 Sum_probs=105.7
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE 82 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~ 82 (190)
+++++|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.+.+++..-..-..++..+...
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i~~~~~~~i~~v~Q~~~l~~~ 529 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLFYVPQRPYMTLG 529 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEeecCCCcEEEECCCCCCCCc
Confidence 578999999995 557999999999999999999999999999999999977 677888877643210000000000000
Q ss_pred hHHHHHHH-------------HHHHHHHHHHcCcce-------------eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 83 DRTENIRR-------------VGEVAKLFADAGLIC-------------IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 83 ~~~~~~~~-------------~~~~~~~~~~~~~~~-------------~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
...+++.. -.++...+...++.. ....+|+||+|| .+||+++.+|+++ +||
T Consensus 530 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~il--lLD 607 (659)
T TIGR00954 530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFA--ILD 607 (659)
T ss_pred CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEE--EEe
Confidence 01111100 011122222222211 235799999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHc
Q 029613 136 MPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~ 155 (190)
|||++||+...+.+++.+++
T Consensus 608 Epts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 608 ECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999886
No 331
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-25 Score=196.95 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=108.2
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~ 78 (190)
++++++++. ..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|+++|+++... .+..++
T Consensus 257 ~l~~~~~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKG----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEecccc----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 356666653 25899999999999999999999999999999999987 77899999998765311 112233
Q ss_pred CChhh-----------HHHHHHH------------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHh
Q 029613 79 FSAED-----------RTENIRR------------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAM 123 (190)
Q Consensus 79 ~~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iaral 123 (190)
|.+++ ..+++.. -..+..++...++. ..+..||+||+|| .+||++
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al 411 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL 411 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH
Confidence 33222 1111100 01233445555552 2377899999999 599999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+|+++ +|||||++||...++.+.+.+++.
T Consensus 412 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l 442 (501)
T PRK11288 412 SEDMKVI--LLDEPTRGIDVGAKHEIYNVIYEL 442 (501)
T ss_pred ccCCCEE--EEcCCCCCCCHhHHHHHHHHHHHH
Confidence 9999999 999999999999999999888664
No 332
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=3.1e-25 Score=177.43 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=99.0
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCCh------------
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSA------------ 81 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~------------ 81 (190)
..+++|+||++++|++++++|+|||||||++|+|.|++ .|.+|.|.++|.+.... .-..+++..
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc-ccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 45789999999999999999999999999999999988 78999999998653210 000001100
Q ss_pred hhH------------HHHHHHHHHHHHHHHHcC-cceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613 82 EDR------------TENIRRVGEVAKLFADAG-LICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK 147 (190)
Q Consensus 82 ~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~ 147 (190)
.+- .+..+++..+.+++..-+ +...+..+|.|||.| ++|.+|+++|+++ ||||||-+||...+.
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VL--fLDEpTvgLDV~aq~ 193 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL--FLDEPTVGLDVNAQA 193 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEE--EecCCccCcchhHHH
Confidence 000 111222233333332222 223477899999999 5999999999999 999999999999998
Q ss_pred HHHHHHHc
Q 029613 148 GLYKLARA 155 (190)
Q Consensus 148 ~~~~~~~~ 155 (190)
.+.+.+++
T Consensus 194 ~ir~Flke 201 (325)
T COG4586 194 NIREFLKE 201 (325)
T ss_pred HHHHHHHH
Confidence 88888876
No 333
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=3e-25 Score=167.04 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=111.7
Q ss_pred ccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613 4 VGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------- 72 (190)
+|+++++++.-+ ...+|++++|.+++||.++|+||||||||||+-.++|+ ..+++|+|++.|.++..-
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CCCCCceEEEcCcchhhcCHHHHHH
Confidence 788999998764 46799999999999999999999999999999999995 488999999999876420
Q ss_pred c-ccccCCChhhH--------HHHH------------HHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCC
Q 029613 73 L-NKNLGFSAEDR--------TENI------------RRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 73 ~-~~~i~~~~~~~--------~~~~------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~ 126 (190)
+ ..+++++.+.. .|+. ........++...|+. .++..||||++|| +||||++..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 1 11234433321 1110 0112233455666653 4699999999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLA 153 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~ 153 (190)
|+++ |.||||-+||...-+++.+.+
T Consensus 165 P~vL--fADEPTGNLD~~Tg~~iaDLl 189 (228)
T COG4181 165 PDVL--FADEPTGNLDRATGDKIADLL 189 (228)
T ss_pred CCEE--eccCCCCCcchhHHHHHHHHH
Confidence 9999 999999999998766655443
No 334
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=1.5e-25 Score=218.08 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=118.4
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
.|+++|++++|.+ .++|+|+||++++||.+||+|+||||||||+++|.|++ ++.+|.|.+||.++.. .++..+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCEecccCCHHHHHhcc
Confidence 3789999999964 36999999999999999999999999999999999977 7889999999988753 344555
Q ss_pred CCChhh-------HHHHHHHH-----HHHHHHHHHc-----------Ccce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613 78 GFSAED-------RTENIRRV-----GEVAKLFADA-----------GLIC----IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~-----~~~~~~~~~~-----------~~~~----~~~~lS~g~kqr-~iarall~~~~i 129 (190)
++.+|+ .++|+... .++...++.. |+.. -...+|+||||| ++|||++++|++
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 655554 22232110 1111111111 2211 245699999999 799999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+ +|||||+++|....+.+.+.+++. .++.|
T Consensus 1396 L--ILDEATSaLD~~Te~~Iq~~I~~~-~~~~T 1425 (1622)
T PLN03130 1396 L--VLDEATAAVDVRTDALIQKTIREE-FKSCT 1425 (1622)
T ss_pred E--EEECCCCCCCHHHHHHHHHHHHHH-CCCCE
Confidence 9 999999999999999999998863 34544
No 335
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=1.3e-25 Score=217.66 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=117.3
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
|+++|++++|.+ .++|+|+||++++||.++|+|+||||||||+++|.|++ ++.+|.|.+||.++.. .++..++
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 789999999953 46999999999999999999999999999999999977 7899999999988743 3444555
Q ss_pred CChhh-------HHHHHHHH-----HHHHHHHHHc-----------Ccce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 79 FSAED-------RTENIRRV-----GEVAKLFADA-----------GLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~-----------~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
+.+|+ .++|+.-. .++.+.+... |+.. -...+|+||||| ++|||++++|+++
T Consensus 1314 iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~IL 1393 (1495)
T PLN03232 1314 IIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKIL 1393 (1495)
T ss_pred EECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 55554 22222100 1111112211 2221 245699999999 7999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+||||||+||....+.+.+.+++. .++.|
T Consensus 1394 --ILDEATSaLD~~Te~~Iq~~L~~~-~~~~T 1422 (1495)
T PLN03232 1394 --VLDEATASVDVRTDSLIQRTIREE-FKSCT 1422 (1495)
T ss_pred --EEECCcccCCHHHHHHHHHHHHHH-cCCCE
Confidence 999999999999999999888863 34444
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=191.52 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=108.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc-ccccccccccCCCh-
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD-NLRHGLNKNLGFSA- 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~-~~~~~~~~~i~~~~- 81 (190)
||.+++++++|+.+.+++++|+++.+|+.+||+|+||||||||+|+|+|.+ .+.+|.|..... .+.. +.+......
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~i~~~~~~~v~~-l~Q~~~~~~~ 80 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGEVTRPKGLRVGY-LSQEPPLDPE 80 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCeEeecCCceEEE-eCCCCCcCCC
Confidence 789999999999999999999999999999999999999999999999988 788898887653 1110 111100000
Q ss_pred -----------hhHHHHHHH---------------H----------------HHHHHHHHHcCcce---eecccCccHHH
Q 029613 82 -----------EDRTENIRR---------------V----------------GEVAKLFADAGLIC---IASLISPYRKD 116 (190)
Q Consensus 82 -----------~~~~~~~~~---------------~----------------~~~~~~~~~~~~~~---~~~~lS~g~kq 116 (190)
....+..+. . .++..++..++... .+..||||+|.
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~ 160 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR 160 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence 000000000 0 11222333333322 36779999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
| .+|++|+.+|+++ +|||||++||......+-..+.+
T Consensus 161 Rv~LA~aL~~~pDlL--LLDEPTNHLD~~~i~WLe~~L~~ 198 (530)
T COG0488 161 RVALARALLEEPDLL--LLDEPTNHLDLESIEWLEDYLKR 198 (530)
T ss_pred HHHHHHHHhcCCCEE--EEcCCCcccCHHHHHHHHHHHHh
Confidence 9 5999999999999 99999999999999888877764
No 337
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.92 E-value=9.2e-25 Score=172.72 Aligned_cols=133 Identities=19% Similarity=0.111 Sum_probs=94.3
Q ss_pred ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-EcCcccccccccccCCChh-hHHHHHHHHH---
Q 029613 18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-LDGDNLRHGLNKNLGFSAE-DRTENIRRVG--- 92 (190)
Q Consensus 18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-~~g~~~~~~~~~~i~~~~~-~~~~~~~~~~--- 92 (190)
.+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|. +++..+...... .+.+. ...+++....
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~~~~~~~--~l~~~ltv~enl~~~~~~~ 77 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDALPLGANS--FILPGLTGEENARMMASLY 77 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCceecccccc--ccCCcCcHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999977 78899986 777654211100 01110 1122221110
Q ss_pred -----HHHH-HHHHcCc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 93 -----EVAK-LFADAGL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 93 -----~~~~-~~~~~~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+... +....++ ...+..+|+||+|| .+||+++.+|+++ +||||++++|+..++.+.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~ll--llDEP~~~lD~~~~~~~~~~l~~ 149 (213)
T PRK15177 78 GLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLY--IADGKLYTGDNATQLRMQAALAC 149 (213)
T ss_pred CCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEE--EECCCCccCCHHHHHHHHHHHHH
Confidence 0011 1111122 12367799999999 6999999999999 99999999999999888887643
No 338
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=9.5e-25 Score=167.80 Aligned_cols=121 Identities=20% Similarity=0.176 Sum_probs=93.0
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA 95 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 95 (190)
.+++++++||++++|++++|+||||||||||+++|.+ .+|.+.+++..... .+..+.|..+ .
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~-~~~~~~~~~q------------~ 68 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKF-SRNKLIFIDQ------------L 68 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccccc-ccccEEEEhH------------H
Confidence 4679999999999999999999999999999998843 36777777652111 1112334433 1
Q ss_pred HHHHHcCc-----ceeecccCccHHHH-HHHHHhCCC--CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 96 KLFADAGL-----ICIASLISPYRKDR-DACRAMLPD--SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 96 ~~~~~~~~-----~~~~~~lS~g~kqr-~iarall~~--~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+.+...++ ...+..+|+||+|| .+||+++.+ |+++ +|||||++||+..++.+.+.+++-
T Consensus 69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~ll--LlDEPt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLF--ILDEPSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 12233333 23467899999999 699999999 9999 999999999999999999988764
No 339
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.91 E-value=1.1e-24 Score=173.34 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=95.5
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh----------HHHHHH-----
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED----------RTENIR----- 89 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~----------~~~~~~----- 89 (190)
|++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ....++|.+++ ..+++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLI-PPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 578999999999999999999999999977 7889999999976521 11112222211 111110
Q ss_pred -----------HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613 90 -----------RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA 153 (190)
Q Consensus 90 -----------~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~ 153 (190)
....+..++...++.. .+..+|+||+|| .+||+++.+|+++ +|||||++||...++.+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--ilDEP~~~LD~~~~~~l~~~l 156 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVL--LLDEPFTGLDMPTQELLTELF 156 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHH
Confidence 0112333444455432 367799999999 6999999999999 999999999999999999999
Q ss_pred HcCC
Q 029613 154 RAGK 157 (190)
Q Consensus 154 ~~~~ 157 (190)
++..
T Consensus 157 ~~~~ 160 (223)
T TIGR03771 157 IELA 160 (223)
T ss_pred HHHH
Confidence 8643
No 340
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=1.1e-24 Score=179.06 Aligned_cols=143 Identities=19% Similarity=0.144 Sum_probs=99.9
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~ 83 (190)
.|+++|+++. ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.--... +...+....
T Consensus 39 ~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~G~I~i~g~i~yv~--q~~~l~~~t 113 (282)
T cd03291 39 NLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSGRISFSS--QFSWIMPGT 113 (282)
T ss_pred eEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEEEEe--CcccccccC
Confidence 5789999885 467999999999999999999999999999999999977 78899998887311000 000000001
Q ss_pred HHHHHH-----------H-HH--HHHHHHHHcCc------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613 84 RTENIR-----------R-VG--EVAKLFADAGL------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE 142 (190)
Q Consensus 84 ~~~~~~-----------~-~~--~~~~~~~~~~~------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld 142 (190)
..+++. . +. .+...+..... ...+..+|+||+|| .+||+++.+|+++ +|||||++||
T Consensus 114 v~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iL--iLDEPt~gLD 191 (282)
T cd03291 114 IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLY--LLDSPFGYLD 191 (282)
T ss_pred HHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEECCCccCC
Confidence 111110 0 00 01111111110 01245799999999 6999999999999 9999999999
Q ss_pred hcChHHHHHHH
Q 029613 143 ARDPKGLYKLA 153 (190)
Q Consensus 143 ~~~~~~~~~~~ 153 (190)
+..++.+++.+
T Consensus 192 ~~~~~~l~~~l 202 (282)
T cd03291 192 VFTEKEIFESC 202 (282)
T ss_pred HHHHHHHHHHH
Confidence 99988887644
No 341
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=180.37 Aligned_cols=151 Identities=18% Similarity=0.226 Sum_probs=116.6
Q ss_pred cccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCcccccc--
Q 029613 3 TVGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRHG-- 72 (190)
Q Consensus 3 ~~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~~-- 72 (190)
++|.++|++.+|. .+.+++++||++.+||.++|+|+||||||-.+..+.++|+. ..+|.|.|+|+++...
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 4799999999985 57899999999999999999999999999999999999953 2467999999886321
Q ss_pred -----c-ccccCCChhh--------------HHHHHH---------HHHHHHHHHHHcCcc-------eeecccCccHHH
Q 029613 73 -----L-NKNLGFSAED--------------RTENIR---------RVGEVAKLFADAGLI-------CIASLISPYRKD 116 (190)
Q Consensus 73 -----~-~~~i~~~~~~--------------~~~~~~---------~~~~~~~~~~~~~~~-------~~~~~lS~g~kq 116 (190)
+ -+.+++..++ ..|.++ .-.++.+++...++. .++..|||||||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ 164 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ 164 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh
Confidence 0 0012222221 111111 112344556666654 368999999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
| .||.|++.+|+++ +.||||.+||...+.++.+.+++
T Consensus 165 RVMIAMALan~P~lL--IADEPTTALDVtvQaQIL~Ll~~ 202 (534)
T COG4172 165 RVMIAMALANEPDLL--IADEPTTALDVTVQAQILDLLKE 202 (534)
T ss_pred HHHHHHHHcCCCCeE--eecCCcchhhhhhHHHHHHHHHH
Confidence 9 5999999999999 99999999999999999988876
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=9.3e-25 Score=195.24 Aligned_cols=144 Identities=21% Similarity=0.238 Sum_probs=108.6
Q ss_pred cceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-----------EcCccccccc---
Q 029613 9 NIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-----------LDGDNLRHGL--- 73 (190)
Q Consensus 9 ~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-----------~~g~~~~~~~--- 73 (190)
+++++|+.. .+|++++ .+++|++++|+||||||||||+|+|+|++ +|+.|.|. ++|.++....
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l-~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL-IPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 488999874 6999999 89999999999999999999999999987 78899987 8887653210
Q ss_pred ---ccccCCChh-----------hHHHHHHH---HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 74 ---NKNLGFSAE-----------DRTENIRR---VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 74 ---~~~i~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
...+++.++ ...+++.. ...+..++...++.. .+..||+||+|| ++|++++.+|+++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll- 234 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY- 234 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE-
Confidence 011111111 11122211 122344555555532 367899999999 6999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||...+..+.+.+++.
T Consensus 235 -lLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 235 -FFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred -EEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988874
No 343
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=4.7e-25 Score=214.09 Aligned_cols=154 Identities=18% Similarity=0.124 Sum_probs=118.5
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
|+++|++++|.+ ..+|+|+||+|++||.++|+|++|||||||+++|.|++ ++.+|.|.+||.++.. .++..++
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccCCHHHHHhcce
Confidence 789999999964 35999999999999999999999999999999999977 7889999999988753 3455666
Q ss_pred CChhh-------HHHHHHHH-----HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCC-CCe
Q 029613 79 FSAED-------RTENIRRV-----GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPD-SNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~-~~i 129 (190)
+.+|+ .++|+.-. .++...+...++. .-...||+||||| .+|||++++ |++
T Consensus 1388 iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~I 1467 (1560)
T PTZ00243 1388 MIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467 (1560)
T ss_pred EECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCE
Confidence 66665 23333211 1222222222221 1235699999999 799999996 899
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+ +||||||+||....+.+.+.+++. +++.|
T Consensus 1468 L--lLDEATSaLD~~te~~Iq~~L~~~-~~~~T 1497 (1560)
T PTZ00243 1468 I--LMDEATANIDPALDRQIQATVMSA-FSAYT 1497 (1560)
T ss_pred E--EEeCCCccCCHHHHHHHHHHHHHH-CCCCE
Confidence 9 999999999999999999888763 34434
No 344
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.91 E-value=5.2e-25 Score=213.81 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=117.7
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++|.+ .++|+|+||++++||.++|+|++|||||||+++|.|++ ++.+|.|.+||.++.. .++..++
T Consensus 1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1285 VEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred EEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccccCHHHHHhcCe
Confidence 789999999964 46999999999999999999999999999999999977 7889999999988753 3445555
Q ss_pred CChhh-------HHHHHHHH-----HHHHHHHHHc-----------Cccee----ecccCccHHHH-HHHHHhCCCCCeE
Q 029613 79 FSAED-------RTENIRRV-----GEVAKLFADA-----------GLICI----ASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~-----------~~~~~----~~~lS~g~kqr-~iarall~~~~il 130 (190)
+.+|+ .++|+.-. .++...+... |+... ...+|+||||| ++|||++++|+++
T Consensus 1364 iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957 1364 IIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred EECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 55554 22332200 1111112211 22222 35699999999 7999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+|||||+++|....+.+.+.+++ ..++.|
T Consensus 1444 --iLDEaTSalD~~Te~~Iq~~l~~-~~~~~T 1472 (1522)
T TIGR00957 1444 --VLDEATAAVDLETDNLIQSTIRT-QFEDCT 1472 (1522)
T ss_pred --EEECCcccCCHHHHHHHHHHHHH-HcCCCE
Confidence 99999999999999999988876 344544
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=2e-24 Score=196.51 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=109.5
Q ss_pred cccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-ccccccccc--C
Q 029613 3 TVGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNL--G 78 (190)
Q Consensus 3 ~~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i--~ 78 (190)
++++++|+++.|++ ..+++++||++.+|++++|+||||||||||+|+|+|++ +|.+|.|.+++.. +.. +.+.. .
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll-~p~~G~I~~~~~~~igy-v~Q~~~~~ 584 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL-QPSSGTVFRSAKVRMAV-FSQHHVDG 584 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCceEEECCceeEEE-Eecccccc
Confidence 37899999999964 56999999999999999999999999999999999987 7788998876532 100 00000 0
Q ss_pred CChhh--HHHHHHH-----HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 79 FSAED--RTENIRR-----VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 79 ~~~~~--~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~ 145 (190)
+.... ....... -..+..++..+++. ..+..||+||+|| .+||+++.+|+++ +|||||++||...
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL--LLDEPT~~LD~~s 662 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL--LLDEPSNHLDLDA 662 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHHH
Confidence 00000 0000000 01233345555553 2367899999999 6999999999999 9999999999999
Q ss_pred hHHHHHHHHc
Q 029613 146 PKGLYKLARA 155 (190)
Q Consensus 146 ~~~~~~~~~~ 155 (190)
.+.+.+.+.+
T Consensus 663 ~~~l~~~L~~ 672 (718)
T PLN03073 663 VEALIQGLVL 672 (718)
T ss_pred HHHHHHHHHH
Confidence 9999888875
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=9.6e-25 Score=198.64 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=106.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--hCCCcEEEEcCccc-----cc-----
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--SRGKLSYILDGDNL-----RH----- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~~~~g~i~~~g~~~-----~~----- 71 (190)
+|+++|++++|++..+|+++||++.+|++++|+|+||||||||+|+|+|... .+.+|.|.+.++.+ ..
T Consensus 177 ~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 177 DIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred eEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence 6899999999998889999999999999999999999999999999998531 34567775433221 00
Q ss_pred -c-------cccccCCChhh---------------------HHHHHHHHHH----------------HHHHHHHcCcc--
Q 029613 72 -G-------LNKNLGFSAED---------------------RTENIRRVGE----------------VAKLFADAGLI-- 104 (190)
Q Consensus 72 -~-------~~~~i~~~~~~---------------------~~~~~~~~~~----------------~~~~~~~~~~~-- 104 (190)
. ....+++..+. ..+...++.+ +..++..+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~ 336 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE 336 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence 0 00001111100 0000111111 22233334442
Q ss_pred ---eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 105 ---CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 105 ---~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
..+..||+|++|| .+|++++.+|+++ +|||||++||......+.+.+++
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lL--lLDEPt~~LD~~~~~~l~~~L~~ 389 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLL--LLDEPTNHLDLHAVLWLETYLLK 389 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEE--EEECCCCCCCHHHHHHHHHHHHH
Confidence 2367899999999 6999999999999 99999999999999999999986
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=1e-24 Score=210.05 Aligned_cols=157 Identities=15% Similarity=0.211 Sum_probs=118.2
Q ss_pred ccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCccccccccccc
Q 029613 4 VGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLRHGLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~~~~~~~i 77 (190)
+++++|++++|+ .+.+|+++|+++++|++++|+||||||||||+++|+|++.. +.+|.|.++|.++....+..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 467899998884 45799999999999999999999999999999999997731 567999999987643334445
Q ss_pred CCChhh--------HHHHHHH---------------HHHHHHHHHHcCccee----ec----ccCccHHHH-HHHHHhCC
Q 029613 78 GFSAED--------RTENIRR---------------VGEVAKLFADAGLICI----AS----LISPYRKDR-DACRAMLP 125 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~~~----~~----~lS~g~kqr-~iarall~ 125 (190)
+|.+++ ..+++.. ...+.+++...++... +. .+|+||||| .||++++.
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~ 918 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA 918 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc
Confidence 555543 1222221 1123344455555332 32 699999999 59999999
Q ss_pred CCC-eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 126 DSN-FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 126 ~~~-il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+|+ ++ +|||||++||......+.+.+++....|.+
T Consensus 919 ~P~~iL--lLDEPTsgLD~~~~~~i~~~L~~la~~g~t 954 (1394)
T TIGR00956 919 KPKLLL--FLDEPTSGLDSQTAWSICKLMRKLADHGQA 954 (1394)
T ss_pred CCCeEE--EEcCCCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 997 89 999999999999999999988875444433
No 348
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=3.8e-24 Score=162.84 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=112.9
Q ss_pred CCcccccCcceeccCc---------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 1 MATVGNSTNIFWQESP---------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~---------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
|.++++++|++|+|.. ..+++.+||.+++|+.++|+|.||||||||+|+|+|++ +|++|.|.++|+.+..
T Consensus 1 ~~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~~L~~ 79 (267)
T COG4167 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDHPLHF 79 (267)
T ss_pred CcchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCccccc
Confidence 4468999999998732 45889999999999999999999999999999999988 8999999999987532
Q ss_pred cc-------------ccccCCChhhHH--------------HHHHHHHHHHHHHHHcCcce-----eecccCccHHHH-H
Q 029613 72 GL-------------NKNLGFSAEDRT--------------ENIRRVGEVAKLFADAGLIC-----IASLISPYRKDR-D 118 (190)
Q Consensus 72 ~~-------------~~~i~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~ 118 (190)
.- ..+-++.|.-.. ..-.+-.++.+-+...|+.+ ++..++.||||| +
T Consensus 80 ~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa 159 (267)
T COG4167 80 GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA 159 (267)
T ss_pred cchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH
Confidence 10 000112221100 00011123334444555543 477899999999 6
Q ss_pred HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+|||++.+|+++ +.||..++||-.-+.++....-+
T Consensus 160 LARALIL~P~iI--IaDeAl~~LD~smrsQl~NL~Le 194 (267)
T COG4167 160 LARALILRPKII--IADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred HHHHHhcCCcEE--EehhhhhhccHHHHHHHHHHHHH
Confidence 999999999999 99999999999988887766544
No 349
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.91 E-value=1.1e-24 Score=160.08 Aligned_cols=117 Identities=30% Similarity=0.406 Sum_probs=84.6
Q ss_pred ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCChhh--------HHHH
Q 029613 20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFSAED--------RTEN 87 (190)
Q Consensus 20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~~~~--------~~~~ 87 (190)
|+++||++.+|++++|+|+||||||||+++|+|.+ ++.+|.|.+++.++.. ..+..+++.+++ ..++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~-~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL-PPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS-HESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999977 6789999999987754 122233333332 1111
Q ss_pred --HHHHHHHHHHHHHcCc-cee----ecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 88 --IRRVGEVAKLFADAGL-ICI----ASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 88 --~~~~~~~~~~~~~~~~-~~~----~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
-..+.++...+..... ... ...+|+||+|| .+|++++.+|+++ +|||||+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~ll--llDEPt~ 137 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLL--LLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEE--EEESTTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEE--EEeCCCC
Confidence 1112222222222221 122 37899999999 6999999999999 9999996
No 350
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=8.6e-25 Score=167.58 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=111.2
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC-cccccc-----cccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG-DNLRHG-----LNKN 76 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g-~~~~~~-----~~~~ 76 (190)
+++.++|++.+|++..+++++||++.+||.-+|+|||||||||++-.|+|.. +|..|.++|+| .++... ++..
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt-rp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT-RPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC-CCCcceEEEcCchhhccCCHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999999977 78889999999 454321 1112
Q ss_pred cCCChhh--------HHHHHHH--------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613 77 LGFSAED--------RTENIRR--------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM 123 (190)
Q Consensus 77 i~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral 123 (190)
++...|. ..+|+.- -.++..++...++.. ....||-||||+ +|..-+
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 2221111 1111110 012334444444433 256799999999 799999
Q ss_pred CCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+++|.++ +||||.+++....+...-+.++.
T Consensus 163 ~Q~P~lL--LlDEPvAGMTd~Et~~taeLl~~ 192 (249)
T COG4674 163 AQDPKLL--LLDEPVAGMTDAETEKTAELLKS 192 (249)
T ss_pred ccCCcEE--EecCccCCCcHHHHHHHHHHHHH
Confidence 9999999 99999999987776665555543
No 351
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.90 E-value=3.5e-24 Score=207.63 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=117.0
Q ss_pred cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
|+++|++++|.. .++|+|+||++++|+.++|+|+||||||||+++|.|++ + .+|.|.+||.++.. .++..++
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~-~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-S-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEcccCCHHHHHhceE
Confidence 788999999964 67999999999999999999999999999999999987 4 68999999988753 3445555
Q ss_pred CChhh-------HHHHHHHH-----HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 79 FSAED-------RTENIRRV-----GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
+.+|+ .++|+.-. .++...+...++. +-...+|+||||| .+|||++++|+++
T Consensus 1296 ~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 55554 23333211 1122222222221 1134699999999 7999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+|||||+++|....+.+.+.+++. .++.|
T Consensus 1376 --lLDEaTS~lD~~Te~~I~~~L~~~-~~~~T 1404 (1490)
T TIGR01271 1376 --LLDEPSAHLDPVTLQIIRKTLKQS-FSNCT 1404 (1490)
T ss_pred --EEeCCcccCCHHHHHHHHHHHHHH-cCCCE
Confidence 999999999999999999998863 34444
No 352
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=5.1e-23 Score=159.93 Aligned_cols=148 Identities=19% Similarity=0.162 Sum_probs=106.3
Q ss_pred ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccc---c
Q 029613 4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLN---K 75 (190)
Q Consensus 4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~---~ 75 (190)
|+.+.|+.+.|.. +++++++|+++.+|+++.++|.||||||||+++|+|.+ .+++|.|+++|.++..... .
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l-~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc-ccCCceEEECceecccCCHHHHh
Confidence 5678888887743 56899999999999999999999999999999999988 8899999999998754110 0
Q ss_pred -ccCCChhh----------HHHHHH------------------HHHHHHHHHHHcCc--c----eeecccCccHHHH-HH
Q 029613 76 -NLGFSAED----------RTENIR------------------RVGEVAKLFADAGL--I----CIASLISPYRKDR-DA 119 (190)
Q Consensus 76 -~i~~~~~~----------~~~~~~------------------~~~~~~~~~~~~~~--~----~~~~~lS~g~kqr-~i 119 (190)
.++-+.|+ .+|++. +.......+...++ . ..+..+||||||- .+
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 00001111 122211 00111112222222 1 2366799999999 59
Q ss_pred HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613 120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLAR 154 (190)
Q Consensus 120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~ 154 (190)
+.|.++.|+++ +|||.|++|||+..+-+.+.-.
T Consensus 160 ~MAtl~~pkiL--LLDEHTAALDPkta~~vm~lT~ 192 (263)
T COG1101 160 LMATLHPPKIL--LLDEHTAALDPKTAEFVMELTA 192 (263)
T ss_pred HHHhcCCCcEE--EecchhhcCCcchHHHHHHHHH
Confidence 99999999999 9999999999998776665544
No 353
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.89 E-value=2.6e-23 Score=187.23 Aligned_cols=145 Identities=18% Similarity=0.218 Sum_probs=108.3
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCccccc-ccccccCCChhh-------
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRH-GLNKNLGFSAED------- 83 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~-~~~~~i~~~~~~------- 83 (190)
+.+++|+|+|+++++||+++|+||||||||||+++|+|.. +++ +|+|.++|.++.. ..+..++|.+++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~-~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS-PKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 3567999999999999999999999999999999999976 443 7899999987542 222334444443
Q ss_pred -HHHHHH---------------HHHHHHHHHHHcCcce----ee------cccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 84 -RTENIR---------------RVGEVAKLFADAGLIC----IA------SLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 84 -~~~~~~---------------~~~~~~~~~~~~~~~~----~~------~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
..+++. ....+..+++..++.. .+ ..+|+||||| .+|++++.+|+++ +|||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl--llDE 192 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL--FCDE 192 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE--EeeC
Confidence 122221 1112344555555532 12 3599999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 137 PLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
||++||......+.+.+++...+|.+
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~t 218 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKT 218 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999876544544
No 354
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.2e-23 Score=172.02 Aligned_cols=180 Identities=17% Similarity=0.181 Sum_probs=130.7
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
+.+.++++.|.. +++++++||.+.+|+.++++|++|+||||++|+|.+.+ +..+|.|.+||+++.. .++..+|.
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D~~sG~I~id~qdir~vtq~slR~aIg~ 341 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-DVNSGSITIDGQDIRDVTQQSLRRAIGI 341 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-CCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence 456789999964 68999999999999999999999999999999999988 8899999999998764 45666777
Q ss_pred ChhhH-------HHHHH------------H---HHHHHHHHHH------cCcceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAEDR-------TENIR------------R---VGEVAKLFAD------AGLICIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~~-------~~~~~------------~---~~~~~~~~~~------~~~~~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.|++- ..+++ . .+++...+.. .++.+....+|||+||| ++||+++++|+++
T Consensus 342 VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il 421 (497)
T COG5265 342 VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPIL 421 (497)
T ss_pred CcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEE
Confidence 77761 11111 1 1122222221 12223356799999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccc-ccCCCCCCceEEecCCccccc
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSF-CYYEKLIPRTCKKKISATTRN 188 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~p~~~~~~~~~~~~~ 188 (190)
+|||.||+||.+..+.+.+.+++-. +|.|-+-+. -..+-.+.|.++=-+++.+++
T Consensus 422 --~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 422 --ILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred --EEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 9999999999999999998888633 444422221 033444555555555555554
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=99.88 E-value=9.1e-23 Score=198.68 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=106.6
Q ss_pred ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC-cEEEEcCccc---------c
Q 029613 4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK-LSYILDGDNL---------R 70 (190)
Q Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~-g~i~~~g~~~---------~ 70 (190)
.++++|++++|+. .++|+|+||++++|+.++|+||+|||||||+++|.|.+ ++.+ |.|.+.+.-- .
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-ccCCCceEEEcCeEEEEcCccccCC
Confidence 3788999999964 56899999999999999999999999999999999988 6777 7887765311 0
Q ss_pred cccccccCCChhhHHHHHHHHHHHH---HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613 71 HGLNKNLGFSAEDRTENIRRVGEVA---KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL 140 (190)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ 140 (190)
...+.++.+......+....+-+.+ ..+... |.. +-...|||||||| ++|||++.+|+++ +||||||+
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~Il--LLDEptSA 770 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVY--IFDDPLSA 770 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEE--EECCCccc
Confidence 1122232221110111122211111 112211 111 2255699999999 6999999999999 99999999
Q ss_pred hhhcChHHHHHHHHcCCCCCcc
Q 029613 141 CEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 141 ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
||....+.+++.+-.+..++.+
T Consensus 771 LD~~~~~~I~~~~l~~~l~~kT 792 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDELRGKT 792 (1622)
T ss_pred cCHHHHHHHHHHHhhHHhcCCE
Confidence 9999888776554333333433
No 356
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.9e-23 Score=163.95 Aligned_cols=142 Identities=19% Similarity=0.226 Sum_probs=105.0
Q ss_pred cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--------cccccCCC
Q 029613 9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--------LNKNLGFS 80 (190)
Q Consensus 9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--------~~~~i~~~ 80 (190)
|+.+++++..+ +++|..+..-+++|.|+||||||||+++|+|++ .|..|.|.++|+.+... -+..+||.
T Consensus 5 ~~~~~lG~~~l--~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~-rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYV 81 (352)
T COG4148 5 NFRQRLGNFAL--DANFTLPARGITALFGPSGSGKTSLINMIAGLT-RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81 (352)
T ss_pred ehhhhcCceEE--EEeccCCCCceEEEecCCCCChhhHHHHHhccC-CccccEEEECCEEeecccCCcccChhhheeeeE
Confidence 44445554433 678888888999999999999999999999988 88999999999876431 23346777
Q ss_pred hhhHH--------HHHHH------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613 81 AEDRT--------ENIRR------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC 141 (190)
Q Consensus 81 ~~~~~--------~~~~~------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l 141 (190)
.|+.+ .|+++ ..++..+...+|.. .++..||||+||| +|+|||+..|+++ +||||+++|
T Consensus 82 FQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LL--LmDEPLaSL 159 (352)
T COG4148 82 FQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELL--LMDEPLASL 159 (352)
T ss_pred eeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCee--eecCchhhc
Confidence 77621 12111 12333444444443 4588999999999 6999999999999 999999999
Q ss_pred hhcChHHHHHHHHc
Q 029613 142 EARDPKGLYKLARA 155 (190)
Q Consensus 142 d~~~~~~~~~~~~~ 155 (190)
|..-+..+...+++
T Consensus 160 D~~RK~EilpylER 173 (352)
T COG4148 160 DLPRKREILPYLER 173 (352)
T ss_pred ccchhhHHHHHHHH
Confidence 98877776655554
No 357
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.9e-22 Score=149.13 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=111.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCcccccc--cccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLRHG--LNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~~~--~~~~i~~ 79 (190)
|+.++|++.+.++...+-++||+|.+|||+.|+||||||||||+.-+.|.+.. .-+|++++++..+..- ....+|+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 57789999999999999999999999999999999999999999999998842 2468899998876431 1112232
Q ss_pred Chhh--------------------HHHHHHHHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 80 SAED--------------------RTENIRRVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 80 ~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
..++ ..-+. +-......+.+.++.. .+..+|||||-| ++.|+++.+|+++ +|
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~KG~a-Rr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l--LL 158 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATLKGNA-RRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL--LL 158 (213)
T ss_pred eecccccccccccccceEEecCcccccHH-HHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCccee--ee
Confidence 2222 11111 1112223345555542 378899999999 6999999999999 99
Q ss_pred eCCchhhhhcChH----HHHHHHHcCCC
Q 029613 135 NMPLELCEARDPK----GLYKLARAGKI 158 (190)
Q Consensus 135 DEP~~~ld~~~~~----~~~~~~~~~~~ 158 (190)
|||||.||...+. .++..+++..+
T Consensus 159 DEPFS~LD~ALR~qfR~wVFs~~r~agi 186 (213)
T COG4136 159 DEPFSRLDVALRDQFRQWVFSEVRAAGI 186 (213)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999877654 45555565433
No 358
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.88 E-value=1.1e-22 Score=197.80 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=106.9
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---------cc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---------HG 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---------~~ 72 (190)
.++++|++++|+. .++++++||++++|++++|+||||||||||+++|+|.+ ++.+|.|.++|.--. ..
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-~~~~G~i~~~g~i~yv~Q~~~l~~~T 714 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVHMKGSVAYVPQQAWIQNDS 714 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-ccCCcEEEECCEEEEEcCCccccCCc
Confidence 5788999999974 57999999999999999999999999999999999977 788999998873110 01
Q ss_pred cccccCCChhhHHHHHHHHHHHH---HHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613 73 LNKNLGFSAEDRTENIRRVGEVA---KLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE 142 (190)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld 142 (190)
.+.++.+...-..+....+.+.+ ..+... +. ...+..|||||||| ++|||++.+|+++ +|||||++||
T Consensus 715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il--lLDEp~saLD 792 (1522)
T TIGR00957 715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY--LFDDPLSAVD 792 (1522)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE--EEcCCccccC
Confidence 11222111000001111111111 112211 11 12356799999999 6999999999999 9999999999
Q ss_pred hcChHHHHHHHH
Q 029613 143 ARDPKGLYKLAR 154 (190)
Q Consensus 143 ~~~~~~~~~~~~ 154 (190)
+...+.+++.+.
T Consensus 793 ~~~~~~i~~~l~ 804 (1522)
T TIGR00957 793 AHVGKHIFEHVI 804 (1522)
T ss_pred HHHHHHHHHHHh
Confidence 999999998886
No 359
>PLN03140 ABC transporter G family member; Provisional
Probab=99.87 E-value=7e-23 Score=197.58 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=110.5
Q ss_pred cccCcceecc-------------CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC--CCcEEEEcCccc
Q 029613 5 GNSTNIFWQE-------------SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR--GKLSYILDGDNL 69 (190)
Q Consensus 5 l~~~~l~~~~-------------~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~--~~g~i~~~g~~~ 69 (190)
+.++|+++.. +.+.+|+++|+.+++|++++|+||||||||||+++|+|.. ++ .+|.|.++|.+.
T Consensus 868 ~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~-~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 868 MSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIRISGFPK 946 (1470)
T ss_pred EEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCC-CCCcccceEEECCccC
Confidence 4567776654 2346999999999999999999999999999999999975 32 478999999765
Q ss_pred cc-ccccccCCChhh--------HHHHHHH---------------HHHHHHHHHHcCccee---------ecccCccHHH
Q 029613 70 RH-GLNKNLGFSAED--------RTENIRR---------------VGEVAKLFADAGLICI---------ASLISPYRKD 116 (190)
Q Consensus 70 ~~-~~~~~i~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~~~---------~~~lS~g~kq 116 (190)
.. ..+..++|..++ ..+++.. ...+.+++...++... +..+|+||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 32 122223444332 1222211 0112334444454321 2579999999
Q ss_pred H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613 117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGL 161 (190)
Q Consensus 117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~ 161 (190)
| .||++++.+|+++ +|||||++||......+.+.+++....|.
T Consensus 1027 RvsIa~aL~~~P~lL--~LDEPTsgLD~~~a~~v~~~L~~l~~~g~ 1070 (1470)
T PLN03140 1027 RLTIAVELVANPSII--FMDEPTSGLDARAAAIVMRTVRNTVDTGR 1070 (1470)
T ss_pred HHHHHHHHhhCCCEE--EEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 9 5999999999999 99999999999999999988877433343
No 360
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=1.8e-22 Score=196.03 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=103.3
Q ss_pred ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcE-EEEcCcc-------c--c
Q 029613 4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLS-YILDGDN-------L--R 70 (190)
Q Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~-i~~~g~~-------~--~ 70 (190)
.++++|++++|+. .++|+|+||++++|+.++|+|++|||||||+++|.|.+ ++.+|. +.+.+.- + .
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cccCCCEEEecCcEEEEcCcccccc
Confidence 3678999999964 56899999999999999999999999999999999988 555543 3333211 0 0
Q ss_pred cccccccCC----ChhhHHHHHHHHHHHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 71 HGLNKNLGF----SAEDRTENIRRVGEVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 71 ~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
...+.++.+ ..+...+.++. ..+...+... |.. +-...|||||||| ++|||++.+|+++ +||||||
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~-~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il--LLDEptS 769 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDV-TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIY--IFDDPLS 769 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHH-hCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEE--EEcCCcc
Confidence 112222222 22211111111 1111112111 111 1245699999999 7999999999999 9999999
Q ss_pred hhhhcChHHHHHHHHcCCCCCcc
Q 029613 140 LCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 140 ~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+||....+.+++.+-.+..++.+
T Consensus 770 aLD~~t~~~I~~~~l~~~l~~kT 792 (1495)
T PLN03232 770 ALDAHVAHQVFDSCMKDELKGKT 792 (1495)
T ss_pred ccCHHHHHHHHHHHhhhhhcCCE
Confidence 99999888887664443334433
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.86 E-value=9.8e-22 Score=172.94 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=106.8
Q ss_pred ccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-ccccc-CC-
Q 029613 4 VGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNL-GF- 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i-~~- 79 (190)
+++++|++++|++ +.+++++||.+.+|+.++|+||||+|||||+|+|+|.+ .+.+|.|.+... +.-. +.+.. .+
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~-~~~~G~v~~g~~-v~igyf~Q~~~~l~ 398 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL-GPLSGTVKVGET-VKIGYFDQHRDELD 398 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc-ccCCceEEeCCc-eEEEEEEehhhhcC
Confidence 6889999999965 68999999999999999999999999999999999987 566887776533 2110 00000 00
Q ss_pred ChhhHHHHHHHH------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613 80 SAEDRTENIRRV------GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK 147 (190)
Q Consensus 80 ~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~ 147 (190)
......+++... ..+...+..++.. ..+..||||||-| .+|+.++..|+++ +|||||+.||....+
T Consensus 399 ~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvL--iLDEPTNhLDi~s~~ 476 (530)
T COG0488 399 PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLL--LLDEPTNHLDIESLE 476 (530)
T ss_pred ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEE--EEcCCCccCCHHHHH
Confidence 000111111111 1223333333332 3477899999999 5999999999999 999999999999988
Q ss_pred HHHHHHHc
Q 029613 148 GLYKLARA 155 (190)
Q Consensus 148 ~~~~~~~~ 155 (190)
.+-+.+.+
T Consensus 477 aLe~aL~~ 484 (530)
T COG0488 477 ALEEALLD 484 (530)
T ss_pred HHHHHHHh
Confidence 88877774
No 362
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.86 E-value=6e-22 Score=165.85 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=87.5
Q ss_pred EECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChhh--------HHHHHHH------------HH
Q 029613 35 ITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAED--------RTENIRR------------VG 92 (190)
Q Consensus 35 L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~~--------~~~~~~~------------~~ 92 (190)
|+||||||||||+|+|+|++ ++.+|+|.++|.++.. .....++|.+++ ..+++.. -.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 58999999999999999977 7889999999977632 111223333322 2222221 01
Q ss_pred HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 93 EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 93 ~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+..++...++.. .+..||+||+|| ++||+++.+|+++ +|||||++||...++.+++.+++-
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll--lLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKIL--LLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 2334455555532 367899999999 6999999999999 999999999999999999888763
No 363
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.86 E-value=3.5e-20 Score=144.93 Aligned_cols=172 Identities=51% Similarity=0.863 Sum_probs=141.5
Q ss_pred ceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHH
Q 029613 10 IFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIR 89 (190)
Q Consensus 10 l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~ 89 (190)
..|.-+.++.-+.....-++|++++|+|+|||||||+++.|++.+...+.+.++++++++...+...++|.+++..+++.
T Consensus 4 ~~~~~~~v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~ 83 (198)
T PRK03846 4 IVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIR 83 (198)
T ss_pred cccccCCCCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHH
Confidence 44555556666666666789999999999999999999999998866678899999998876554557888888888888
Q ss_pred HHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccccc
Q 029613 90 RVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCY 169 (190)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
++..++..+...|...+....+.....|+.++.++.+..++.|+||.|...+..|+.+.++...+.+++..+.....+ |
T Consensus 84 ~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~-Y 162 (198)
T PRK03846 84 RVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSV-Y 162 (198)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCccccccc-C
Confidence 887777777777777777777778888999999998877766799999999999987777776667788888899999 9
Q ss_pred CCCCCCceEEecC
Q 029613 170 YEKLIPRTCKKKI 182 (190)
Q Consensus 170 ~~p~~p~~~~~~~ 182 (190)
++|..+|+++|--
T Consensus 163 ~~p~~ad~~Idt~ 175 (198)
T PRK03846 163 EAPESPEIHLDTG 175 (198)
T ss_pred CCCCCCCEEEECC
Confidence 9999999999843
No 364
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.85 E-value=7.1e-20 Score=141.42 Aligned_cols=164 Identities=57% Similarity=0.932 Sum_probs=139.4
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAK 96 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 96 (190)
++..++.+...++|++++|+|++||||||+++.|.+.+...+.+.++++++++...+....+|..+++.++...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T TIGR00455 5 ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAK 84 (184)
T ss_pred CCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHH
Confidence 44556667788999999999999999999999999988655656789999988766656667888888887877777777
Q ss_pred HHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCc
Q 029613 97 LFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR 176 (190)
Q Consensus 97 ~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~ 176 (190)
.+...|...++...++...+|..++.++.+.++..+++|.|...+-.|+.+.+++..+.++++.+.+...+ |++|..|+
T Consensus 85 ~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~-y~~p~~ad 163 (184)
T TIGR00455 85 LFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSP-YEAPENPE 163 (184)
T ss_pred HHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCC-CCCCCCCc
Confidence 77778888888888888888999999988877866799999999998888888887778899999999999 99999999
Q ss_pred eEEec
Q 029613 177 TCKKK 181 (190)
Q Consensus 177 ~~~~~ 181 (190)
+++|-
T Consensus 164 l~Idt 168 (184)
T TIGR00455 164 VVLDT 168 (184)
T ss_pred EEEEC
Confidence 99983
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=1.2e-21 Score=189.12 Aligned_cols=138 Identities=15% Similarity=0.123 Sum_probs=103.3
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCcccccc-cccccCCChhh--------
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRHG-LNKNLGFSAED-------- 83 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~~-~~~~i~~~~~~-------- 83 (190)
.+.+|+|+|+.+++|++++|+||||||||||+|+|+|.+ ++. +|+|.++|.++... .+..++|..++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l-~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 467999999999999999999999999999999999987 555 89999999765321 12223333332
Q ss_pred HHHHHHHHH----------------------------------------------HHHHHHHHcCcce---------eec
Q 029613 84 RTENIRRVG----------------------------------------------EVAKLFADAGLIC---------IAS 108 (190)
Q Consensus 84 ~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~---------~~~ 108 (190)
..+++.... .+..++...++.. .+.
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 111111000 0122344455532 245
Q ss_pred ccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 109 LISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 109 ~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+||||||| .+|++++.+|+++ +|||||++||......+.+.+++-
T Consensus 336 glSGGerkRVsia~aL~~~p~vl--llDEPTsGLDs~t~~~i~~~Lr~l 382 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTL--FMDEISTGLDSSTTYQIVKCLQQI 382 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEE--EEeCCCcCccHHHHHHHHHHHHHH
Confidence 799999999 5999999999999 999999999999999999988874
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.85 E-value=1.7e-21 Score=188.04 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=103.8
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh---hCCCcEEEEcCccccc---ccccccCCChhh------
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY---SRGKLSYILDGDNLRH---GLNKNLGFSAED------ 83 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~---~~~~g~i~~~g~~~~~---~~~~~i~~~~~~------ 83 (190)
.+++|+|+|+.+++|++++|+||||||||||+|+|+|++. .+.+|+|.++|.++.. ..+..++|..++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 3569999999999999999999999999999999999762 3578999999976532 122224444432
Q ss_pred --HHHHHHH-------------------HHHH-HHHHHHcCccee---------ecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 84 --RTENIRR-------------------VGEV-AKLFADAGLICI---------ASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 84 --~~~~~~~-------------------~~~~-~~~~~~~~~~~~---------~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
..+++.. .... ..++...++... +..+||||||| .||++++.+|+++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl- 231 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ- 231 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE-
Confidence 1122111 0011 123444555432 35699999999 5999999999999
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||......+.+.+++.
T Consensus 232 -llDEPTsgLD~~~~~~i~~~L~~l 255 (1394)
T TIGR00956 232 -CWDNATRGLDSATALEFIRALKTS 255 (1394)
T ss_pred -EEeCCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999988874
No 367
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=2.3e-21 Score=173.99 Aligned_cols=147 Identities=21% Similarity=0.255 Sum_probs=108.9
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCccccc-ccccccCCChhh--------H
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLRH-GLNKNLGFSAED--------R 84 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~~-~~~~~i~~~~~~--------~ 84 (190)
.+++|+++|..+++||+++|+||+|||||||+++|+|.... .-+|.|.+||+.... ..+...+|..|+ .
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 36799999999999999999999999999999999998842 357999999954322 233334455544 1
Q ss_pred HHHHH---------------HHHHHHHHHHHcCccee----e-----cccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 85 TENIR---------------RVGEVAKLFADAGLICI----A-----SLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 85 ~~~~~---------------~~~~~~~~~~~~~~~~~----~-----~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
+|.+. +...+..++...++... + ..+|||||+| .+|..++.+|.++ ++||||+
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iL--flDEPTS 199 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSIL--FLDEPTS 199 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEE--EecCCCC
Confidence 12111 11234445555555422 2 4599999999 5999999999999 9999999
Q ss_pred hhhhcChHHHHHHHHcCCCCCcccc
Q 029613 140 LCEARDPKGLYKLARAGKIKGLLSI 164 (190)
Q Consensus 140 ~ld~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
+||......+.+.+++-..+|.+=+
T Consensus 200 GLDS~sA~~vv~~Lk~lA~~grtVi 224 (613)
T KOG0061|consen 200 GLDSFSALQVVQLLKRLARSGRTVI 224 (613)
T ss_pred CcchhhHHHHHHHHHHHHhCCCEEE
Confidence 9999999888888887555565533
No 368
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.85 E-value=2e-21 Score=188.57 Aligned_cols=133 Identities=19% Similarity=0.185 Sum_probs=93.3
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---------cccccccCCChhhHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---------HGLNKNLGFSAEDRTEN 87 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---------~~~~~~i~~~~~~~~~~ 87 (190)
.++++|+||++++|++++|+||||||||||+++|+|.+ ++.+|.|.++|.--. .....++.+......+.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~-~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 45899999999999999999999999999999999987 788999999873110 01111111110000001
Q ss_pred HHHHHH---HHHHHHHc--C----cceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613 88 IRRVGE---VAKLFADA--G----LICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL 152 (190)
Q Consensus 88 ~~~~~~---~~~~~~~~--~----~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~ 152 (190)
...+.. +...+... + +...+..|||||||| .+|||++.+|+++ +||||+++||....+.+++.
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~il--lLDep~saLD~~~~~~i~~~ 590 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLY--LLDSPFTHLDVVTEKEIFES 590 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEE--EEeCCcccCCHHHHHHHHHH
Confidence 111111 11112111 1 112256799999999 6999999999999 99999999999999999875
No 369
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.85 E-value=8.3e-20 Score=136.84 Aligned_cols=148 Identities=60% Similarity=1.011 Sum_probs=121.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeecccC
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLIS 111 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS 111 (190)
+++|+|++||||||+++.|++.+...+...+.++++.+...+....++.++++.+..+.+...+..+...+...++....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~ 80 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS 80 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 47899999999999999999988655656788898888765555556777766666666555666565667666666666
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEe
Q 029613 112 PYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKK 180 (190)
Q Consensus 112 ~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 180 (190)
....+|..++.++...++..+++|.|...|..|+.+++|...+.|++++++|++.. |++|.+||+++|
T Consensus 81 ~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 148 (149)
T cd02027 81 PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGFTGIDDP-YEAPENPDLVLD 148 (149)
T ss_pred CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCccccCCC-CCCCCCCeeEec
Confidence 77777877788887678877799999999999999999999999999999999999 999999999887
No 370
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=2.9e-21 Score=179.69 Aligned_cols=154 Identities=17% Similarity=0.194 Sum_probs=123.5
Q ss_pred ccccCcceeccCccc-cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613 4 VGNSTNIFWQESPIG-RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~-~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i 77 (190)
.+.++++++.|+... |++++|+.+++|||.|+.|+|||||||++++|.|.. ++++|++++.|.++... ....+
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhc
Confidence 456889999998776 999999999999999999999999999999999976 88999999999887542 45668
Q ss_pred CCChhhH--------HHHHHHHH------------HHHHHHHHcCccee----ecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 78 GFSAEDR--------TENIRRVG------------EVAKLFADAGLICI----ASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 78 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
||.||.. +|.+...+ .+...+...++... +..+|+|+|+| ..|.|++.+|+++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi-- 720 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI-- 720 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE--
Confidence 9988862 12221111 12334444555433 67799999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+||||++++|+..++.+++.+.+-...|
T Consensus 721 ~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 721 LLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999887654333
No 371
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.84 E-value=5.5e-21 Score=152.42 Aligned_cols=143 Identities=19% Similarity=0.143 Sum_probs=86.2
Q ss_pred eccCccccccccccccCCccEEEEECCCCCcHHHHH-HHHHH--HHh-----hC----CCcEEE------EcCccccccc
Q 029613 12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLA-FSVNK--ELY-----SR----GKLSYI------LDGDNLRHGL 73 (190)
Q Consensus 12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLl-r~l~g--~l~-----~~----~~g~i~------~~g~~~~~~~ 73 (190)
+......+++++||++++||+++|+|+||||||||+ ..+.. ... .+ ..+.+. +.+.......
T Consensus 3 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 3 VRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred eccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 344567899999999999999999999999999996 33321 000 00 000000 0111000000
Q ss_pred ccc-cCCChh-------hHHHHHHH------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCC--CeEE
Q 029613 74 NKN-LGFSAE-------DRTENIRR------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDS--NFIE 131 (190)
Q Consensus 74 ~~~-i~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~--~il~ 131 (190)
... ....+. +..+.+.. .......+...++. ..+..+|+||+|| .+||+++.+| +++
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~ll- 161 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLY- 161 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEE-
Confidence 000 000110 00000000 01112334444443 2477899999999 6999999998 599
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+++.+++.
T Consensus 162 -llDEPt~gLD~~~~~~l~~~l~~~ 185 (226)
T cd03270 162 -VLDEPSIGLHPRDNDRLIETLKRL 185 (226)
T ss_pred -EEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 372
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=8.1e-21 Score=150.22 Aligned_cols=133 Identities=19% Similarity=0.110 Sum_probs=95.0
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh--------------
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE-------------- 82 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~-------------- 82 (190)
..+|+|+||++.+||.+||+|+||||||||+|+|+|.+ +|++|.+.++|+-... +....|+.++
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt~G~v~v~G~v~~l-i~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPTSGKVKVTGKVAPL-IELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCCCceEEEcceEehh-hhcccCCCcccchHHHHHHHHHHh
Confidence 56899999999999999999999999999999999988 8999999999874311 1112233332
Q ss_pred -----hHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 83 -----DRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 83 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+..+....+.+.+++=+ -....+..+|.||+-| +++-+...+|+++ ++||-+++-|+.-.++=.+.+.+
T Consensus 118 G~~~~ei~~~~~eIieFaELG~--fi~~PvktYSSGM~aRLaFsia~~~~pdIL--llDEvlavGD~~F~~K~~~rl~e 192 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGD--FIDQPVKTYSSGMYARLAFSVATHVEPDIL--LLDEVLAVGDAAFQEKCLERLNE 192 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHH--HhhCchhhccHHHHHHHHHhhhhhcCCCEE--EEehhhhcCCHHHHHHHHHHHHH
Confidence 22211111111111100 0112366799999999 7999999999999 99999999998866655555544
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=1e-20 Score=184.10 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=93.3
Q ss_pred cCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---------cccccccCCChhhH
Q 029613 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---------HGLNKNLGFSAEDR 84 (190)
Q Consensus 14 ~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---------~~~~~~i~~~~~~~ 84 (190)
+++.++++++||++++|++++|+||||||||||+++|+|.+ ++.+|.|.+++.--. .....++.+.....
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~-~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~ 748 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEED 748 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhh
Confidence 34567999999999999999999999999999999999987 778888877532100 01111111111000
Q ss_pred HHHHHHH---HHHHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613 85 TENIRRV---GEVAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA 153 (190)
Q Consensus 85 ~~~~~~~---~~~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~ 153 (190)
.+..... ..+...+... +. ...+..|||||||| .+|||++.+|+++ +|||||++||+...+.+++.+
T Consensus 749 ~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~il--lLDEP~saLD~~~~~~i~~~~ 825 (1560)
T PTZ00243 749 AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVY--LLDDPLSALDAHVGERVVEEC 825 (1560)
T ss_pred HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEE--EEcCccccCCHHHHHHHHHHH
Confidence 0111111 1111122221 22 23367799999999 6999999999999 999999999998888777643
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=5.1e-20 Score=174.25 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=120.1
Q ss_pred cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
|+++|++.+|... .+|+++||.|++||-+||+|+.|||||||+.+|-++. .+.+|.|.+||.++.+ .++..++
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-EPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-CccCCeEEEcCeecccccHHHHHhcCe
Confidence 7899999999654 7999999999999999999999999999999999987 6789999999988643 2333333
Q ss_pred CChhh----------------------HHHHHHHHHHHHHHHHH--cCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED----------------------RTENIRRVGEVAKLFAD--AGLIC----IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~----------------------~~~~~~~~~~~~~~~~~--~~~~~----~~~~lS~g~kqr-~iarall~~~~i 129 (190)
.-||+ ..+.+.+. ++...... .++.. -...+|-||||. .+|||++++.++
T Consensus 1218 IIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~-~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1218 IIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERC-QLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred eeCCCCceecCccccccCcccccCHHHHHHHHHHh-ChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 33333 33333221 11112211 12222 245699999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccc
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSF 167 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (190)
+ +|||+|++.|.+.-..+.+.+|+ ++++-|-+++.
T Consensus 1297 L--vLDEATAsVD~~TD~lIQ~tIR~-~F~dcTVltIA 1331 (1381)
T KOG0054|consen 1297 L--VLDEATASVDPETDALIQKTIRE-EFKDCTVLTIA 1331 (1381)
T ss_pred E--EEecccccCChHHHHHHHHHHHH-HhcCCeEEEEe
Confidence 9 99999999999998888888886 66676655555
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.82 E-value=5.7e-20 Score=162.11 Aligned_cols=147 Identities=19% Similarity=0.251 Sum_probs=109.1
Q ss_pred ccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-cc----------c
Q 029613 4 VGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LR----------H 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~----------~ 71 (190)
.+.++|++..-++ ...+++.+|++++|+-+.|.|+||||||||+|+|+|++ +-++|.|.+-.+. +- .
T Consensus 392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW-P~g~G~I~~P~~~~~lflpQ~PY~p~G 470 (604)
T COG4178 392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW-PWGSGRISMPADSALLFLPQRPYLPQG 470 (604)
T ss_pred eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC-ccCCCceecCCCCceEEecCCCCCCCc
Confidence 5788899887754 67899999999999999999999999999999999998 7788887766332 10 0
Q ss_pred ccccccCC-------ChhhHHHHHHHH--HHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613 72 GLNKNLGF-------SAEDRTENIRRV--GEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC 141 (190)
Q Consensus 72 ~~~~~i~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l 141 (190)
.++..+.| .+++..+.+..+ .+++..+++ ....-..||+||+|| ++||.++++|+++ +|||.|++|
T Consensus 471 tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~--~~~W~~vLS~GEqQRlafARilL~kP~~v--~LDEATsAL 546 (604)
T COG4178 471 TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE--EDRWDRVLSGGEQQRLAFARLLLHKPKWV--FLDEATSAL 546 (604)
T ss_pred cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc--cCcHhhhcChhHHHHHHHHHHHHcCCCEE--EEecchhcc
Confidence 12222222 223333322221 223332222 122345699999999 7999999999999 999999999
Q ss_pred hhcChHHHHHHHHc
Q 029613 142 EARDPKGLYKLARA 155 (190)
Q Consensus 142 d~~~~~~~~~~~~~ 155 (190)
|+.....+|+++++
T Consensus 547 De~~e~~l~q~l~~ 560 (604)
T COG4178 547 DEETEDRLYQLLKE 560 (604)
T ss_pred ChHHHHHHHHHHHh
Confidence 99999999999987
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.81 E-value=1e-20 Score=147.92 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=88.4
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---------CcEEEEcCccccc-ccccccCCChhhHHHHHH-
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---------KLSYILDGDNLRH-GLNKNLGFSAEDRTENIR- 89 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---------~g~i~~~g~~~~~-~~~~~i~~~~~~~~~~~~- 89 (190)
+++++++.+| +++|+||||||||||+++|++++. +. .+.+.+.+.+... .....+++..++......
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG-EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc-cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence 6789999999 999999999999999999999873 22 1235555554321 111223343332111000
Q ss_pred -HHHHHHHHHHHcCc-ceeecccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 90 -RVGEVAKLFADAGL-ICIASLISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 90 -~~~~~~~~~~~~~~-~~~~~~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
....+.++++..+. ...+..+|+||+|| .+|++++ .+|+++ +||||+++||+.....+.+.+++.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~il--llDEP~~~LD~~~~~~l~~~l~~~ 163 (197)
T cd03278 92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFC--VLDEVDAALDDANVERFARLLKEF 163 (197)
T ss_pred EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEE--EEeCCcccCCHHHHHHHHHHHHHh
Confidence 00122222222222 23467899999999 6999985 566899 999999999999999999998874
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=4.9e-20 Score=147.95 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=87.1
Q ss_pred eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH---------------hhCCCc--------EEEEcCcc
Q 029613 12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL---------------YSRGKL--------SYILDGDN 68 (190)
Q Consensus 12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l---------------~~~~~g--------~i~~~g~~ 68 (190)
++|++..++++++ |++++|+||||||||||+++|++.+ ..++++ .+.+++.+
T Consensus 10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~ 84 (243)
T cd03272 10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSD 84 (243)
T ss_pred cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCC
Confidence 4577777888877 7899999999999999999998543 123344 45555421
Q ss_pred cc-------cccccccCCChhh---------HHHHHHHHHHH----------------HHHHHHcC-cceeecccCccHH
Q 029613 69 LR-------HGLNKNLGFSAED---------RTENIRRVGEV----------------AKLFADAG-LICIASLISPYRK 115 (190)
Q Consensus 69 ~~-------~~~~~~i~~~~~~---------~~~~~~~~~~~----------------~~~~~~~~-~~~~~~~lS~g~k 115 (190)
-. ......+++.++. ..+....+..+ ..++.... ....+..+|+||+
T Consensus 85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~ 164 (243)
T cd03272 85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQK 164 (243)
T ss_pred CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHH
Confidence 10 0111122332221 11111111110 00111000 1123677999999
Q ss_pred HH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 116 DR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 116 qr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|| .+||+++ .+|+++ +|||||++||+...+.+++.+++.
T Consensus 165 ~r~~la~~l~~~~~~~~~il--llDEp~~~ld~~~~~~~~~~l~~~ 208 (243)
T cd03272 165 SLVALALIFAIQKCDPAPFY--LFDEIDAALDAQYRTAVANMIKEL 208 (243)
T ss_pred HHHHHHHHHHHhccCCCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence 99 6999995 467999 999999999999999999988874
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.79 E-value=2.8e-19 Score=154.23 Aligned_cols=150 Identities=14% Similarity=0.158 Sum_probs=100.9
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccc----cccccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHG----LNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~----~~~~i~ 78 (190)
-+.+.|++++|.++..++|.+|++.+|+-+||+|+|||||||++++|.|...+ |.+-.+++-.+++... +...+.
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM 154 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhh
Confidence 47899999999999999999999999999999999999999999999998732 2222222222222110 000000
Q ss_pred CChhhHHHH----------------------HHHH---------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHH
Q 029613 79 FSAEDRTEN----------------------IRRV---------GEVAKLFADAGLI-----CIASLISPYRKDR-DACR 121 (190)
Q Consensus 79 ~~~~~~~~~----------------------~~~~---------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iar 121 (190)
....++.+. ..+. .+.+.++...+.. ..+..+|+|.+.| ++||
T Consensus 155 ~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr 234 (614)
T KOG0927|consen 155 ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALAR 234 (614)
T ss_pred hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHH
Confidence 011110000 0000 1122222222221 1367799999999 5999
Q ss_pred HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+|+.+|+++ +|||||++||......+-+.+.+
T Consensus 235 ~Lf~kP~LL--LLDEPtnhLDleA~~wLee~L~k 266 (614)
T KOG0927|consen 235 ALFQKPDLL--LLDEPTNHLDLEAIVWLEEYLAK 266 (614)
T ss_pred HHhcCCCEE--EecCCccCCCHHHHHHHHHHHHh
Confidence 999999999 99999999999988887777765
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.78 E-value=4.7e-19 Score=152.81 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=110.5
Q ss_pred cccccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 3 TVGNSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
|++.++|++|.|.+. .++++++|.+..++-++++||||+|||||+|++.|.+ .|..|.+.-....... ......
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~l 466 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQL 466 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhc
Confidence 467899999999866 5889999999999999999999999999999999988 6777766543322111 000011
Q ss_pred CCChhhHHHH------HHHHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 78 GFSAEDRTEN------IRRVGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 78 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~ 145 (190)
.+......-. ..+...+..++...|+. .....||.|+|.| .+|+.++..|.++ +|||||++||-..
T Consensus 467 dl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL--lLDEPtnhLDi~t 544 (614)
T KOG0927|consen 467 DLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL--LLDEPTNHLDIET 544 (614)
T ss_pred CcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE--EecCCCcCCCchh
Confidence 1111111000 11233455566666664 2367799999999 5999999999999 9999999999999
Q ss_pred hHHHHHHHHc
Q 029613 146 PKGLYKLARA 155 (190)
Q Consensus 146 ~~~~~~~~~~ 155 (190)
...+.+.+.+
T Consensus 545 id~laeaiNe 554 (614)
T KOG0927|consen 545 IDALAEAINE 554 (614)
T ss_pred HHHHHHHHhc
Confidence 9999988876
No 380
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.5e-18 Score=144.09 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=104.5
Q ss_pred cccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccc----c---
Q 029613 5 GNSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNK----N--- 76 (190)
Q Consensus 5 l~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~----~--- 76 (190)
++++|+.+.|... .-+..||+++++||++.|+|.|||||||+++++.|+. .|.+|.|++||+++...-.. .
T Consensus 323 lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred eeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-CCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 7899999999766 5688999999999999999999999999999999966 89999999999887531100 0
Q ss_pred -----------cC----CChhhHHHHHHHHHHHHHHHHHcCc--ce-eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 77 -----------LG----FSAEDRTENIRRVGEVAKLFADAGL--IC-IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 77 -----------i~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
.+ -.++....+++++ ++-....+ .. ....+|-|||+| ++.-|++.+.+++ ++||=
T Consensus 402 vFsDyhLF~~ll~~e~~as~q~i~~~LqrL----el~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Il--v~DEW 475 (546)
T COG4615 402 VFSDYHLFDQLLGPEGKASPQLIEKWLQRL----ELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDIL--VLDEW 475 (546)
T ss_pred HhhhHhhhHhhhCCccCCChHHHHHHHHHH----HHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeE--Eeehh
Confidence 00 0011111111111 01011111 11 255699999999 7999999999999 99999
Q ss_pred chhhhhcChHHHHHHH
Q 029613 138 LELCEARDPKGLYKLA 153 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~ 153 (190)
.+-.||.-++.+|+.+
T Consensus 476 AADQDPaFRR~FY~~l 491 (546)
T COG4615 476 AADQDPAFRREFYQVL 491 (546)
T ss_pred hccCChHHHHHHHHHH
Confidence 9999999888888765
No 381
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1.9e-18 Score=163.72 Aligned_cols=179 Identities=19% Similarity=0.153 Sum_probs=126.0
Q ss_pred ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---------c
Q 029613 4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---------H 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---------~ 71 (190)
.++++|.+++.++ .+.|+|+||++++|+.++|+|+-|||||+|+.+|.|.+ +.-+|.+.++|.--+ .
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm-~~~sG~v~v~gsiaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM-PKLSGSVAVNGSVAYVPQQPWIQNG 596 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc-ccccceEEEcCeEEEeccccHhhCC
Confidence 4677887777653 34899999999999999999999999999999999998 677899999886211 0
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHc------Ccce---eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613 72 GLNKNLGFSAEDRTENIRRVGEVAKLFADA------GLIC---IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC 141 (190)
Q Consensus 72 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l 141 (190)
..+.++-|..+-..+...++-+.+.+-.+. .... -...|||||||| .+|||+.++++++ +||.|+|++
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIY--LLDDplSAV 674 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIY--LLDDPLSAV 674 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEE--EEcCcchhh
Confidence 122333222111112222222222221121 1122 256799999999 6999999999999 999999999
Q ss_pred hhcChHHHHHHHHcCCCCCcc--cccccccCCCCCCceEEecCCccc
Q 029613 142 EARDPKGLYKLARAGKIKGLL--SIFSFCYYEKLIPRTCKKKISATT 186 (190)
Q Consensus 142 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~p~~~~~~~~~~~ 186 (190)
|...-+.+++..-.|.-.+.| .++++ -+-..+.|.++==+++.+
T Consensus 675 Dahvg~~if~~ci~~~L~~KT~ILVTHq-l~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRGLLRGKTVILVTHQ-LQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred hHhhhHHHHHHHHHhhhcCCEEEEEeCc-hhhhhhCCEEEEecCCeE
Confidence 999999988877766555434 67777 666677776665555544
No 382
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.75 E-value=1.3e-16 Score=122.21 Aligned_cols=153 Identities=48% Similarity=0.765 Sum_probs=117.3
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA 107 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (190)
++|++++|+|++||||||+++.|++.+...+...++++++.+...+...+++..+++..+.+.+..++..+...+...+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV 81 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 68999999999999999999999998854444456789888766555556677777777777776666666566666556
Q ss_pred cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecCC
Q 029613 108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKIS 183 (190)
Q Consensus 108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~ 183 (190)
...++....|..++.+.. .+..|++|.|...+..|..+.+++..+.+++..+.....+ |+.|..+|+.++--+
T Consensus 82 ~~~~~~~~~~~~l~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~-~~~p~~ad~~i~~~~ 154 (175)
T PRK00889 82 SAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDP-YEPPLNPEVECRTDL 154 (175)
T ss_pred ecCCCCHHHHHHHHhhcC--CeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCC-CCCCCCCcEEEECCC
Confidence 666776666666666654 4556699999999988987888877777788888888888 888988998886543
No 383
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.74 E-value=1e-17 Score=145.65 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=108.7
Q ss_pred cccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc--C--cccc------
Q 029613 3 TVGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD--G--DNLR------ 70 (190)
Q Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~--g--~~~~------ 70 (190)
+++++++++..-++ ..+++++||++..|+-+.|+||||||||+|+|.+.|++ +..+|.+..- + .++-
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW-p~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW-PSTGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc-ccCCCeEEecccCCCCceEEecCCC
Confidence 36788888887643 45779999999999999999999999999999999998 6667766543 3 2110
Q ss_pred ----cccccccCCChhh--------HHHHHHH-H--HHHHHHHHHcCcc------eeecccCccHHHH-HHHHHhCCCCC
Q 029613 71 ----HGLNKNLGFSAED--------RTENIRR-V--GEVAKLFADAGLI------CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 71 ----~~~~~~i~~~~~~--------~~~~~~~-~--~~~~~~~~~~~~~------~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
..++.++-|.... ..+.+.+ + .++..+..+.+-. ++...||+|++|| ++||-+.++|+
T Consensus 511 Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk 590 (659)
T KOG0060|consen 511 YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPK 590 (659)
T ss_pred CccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCc
Confidence 0233333333111 0111111 1 2344455544433 2467799999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+. +|||.||+++......+|++.++
T Consensus 591 ~A--iLDE~TSAv~~dvE~~~Yr~~r~ 615 (659)
T KOG0060|consen 591 FA--ILDECTSAVTEDVEGALYRKCRE 615 (659)
T ss_pred eE--EeechhhhccHHHHHHHHHHHHH
Confidence 99 99999999999988999999887
No 384
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.9e-18 Score=145.37 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=98.3
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-----EcCcccccc---cccc
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-----LDGDNLRHG---LNKN 76 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-----~~g~~~~~~---~~~~ 76 (190)
|.+++.+..||++.+|.+.++.+..|.-+||+|+||+|||||+|+|+.- +.+++ +.|+++.+. +..+
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-----~v~~f~veqE~~g~~t~~~~~~l~~D 155 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-----QVSGFHVEQEVRGDDTEALQSVLESD 155 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-----CcCccCchhheeccchHHHhhhhhcc
Confidence 5667888899999999999999999999999999999999999999871 11111 223332210 0000
Q ss_pred ---cCCChhhHHHHHH-HHHHHHH-HHHHcCcce-----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 77 ---LGFSAEDRTENIR-RVGEVAK-LFADAGLIC-----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 77 ---i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~ 145 (190)
..+..++..-..+ ...++.. ++..+|... ....+|||=|.| ++|||+..+|+++ +|||||+.||...
T Consensus 156 ~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlL--LLDEPTNhLDv~a 233 (582)
T KOG0062|consen 156 TERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLL--LLDEPTNHLDVVA 233 (582)
T ss_pred HHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEE--eecCCcccchhHH
Confidence 0011111000011 1223333 444444432 356799999999 7999999999999 9999999999999
Q ss_pred hHHHHHHHHc
Q 029613 146 PKGLYKLARA 155 (190)
Q Consensus 146 ~~~~~~~~~~ 155 (190)
...+-..+..
T Consensus 234 v~WLe~yL~t 243 (582)
T KOG0062|consen 234 VAWLENYLQT 243 (582)
T ss_pred HHHHHHHHhh
Confidence 8888777765
No 385
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.73 E-value=2e-17 Score=134.45 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=91.8
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHH-----HHHhh----CC-----------CcEEEEcCccccccccc
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVN-----KELYS----RG-----------KLSYILDGDNLRHGLNK 75 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~-----g~l~~----~~-----------~g~i~~~g~~~~~~~~~ 75 (190)
....|+++++.++.|.+++|+|.||||||||++.+. ..+.. ++ ...+.++..++....+.
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs 86 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS 86 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence 345789999999999999999999999999999662 11110 11 11355665444321111
Q ss_pred c------------------------------cCCChhh--------HHHHHHH------HHHHHHHHHHcCcce-----e
Q 029613 76 N------------------------------LGFSAED--------RTENIRR------VGEVAKLFADAGLIC-----I 106 (190)
Q Consensus 76 ~------------------------------i~~~~~~--------~~~~~~~------~~~~~~~~~~~~~~~-----~ 106 (190)
. +.|.... ..+.+.. +.+....+...++.. .
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~ 166 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQP 166 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCc
Confidence 0 0111111 1111111 122334445555532 2
Q ss_pred ecccCccHHHH-HHHHHhCCC---CCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 107 ASLISPYRKDR-DACRAMLPD---SNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 107 ~~~lS~g~kqr-~iarall~~---~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+..+|+||+|| .+|++++.+ |+++ +|||||++||+.++..+.+.+++..
T Consensus 167 ~~~LSgGe~QRl~LAraL~~~~~~p~ll--lLDEPtsgLD~~~~~~l~~~L~~l~ 219 (261)
T cd03271 167 ATTLSGGEAQRIKLAKELSKRSTGKTLY--ILDEPTTGLHFHDVKKLLEVLQRLV 219 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCcEE--EEECCCCCCCHHHHHHHHHHHHHHH
Confidence 67799999999 699999996 6899 9999999999999999998887643
No 386
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=1.2e-18 Score=162.57 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=103.1
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEEcCcccc-cccccccCCChhh--------
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYILDGDNLR-HGLNKNLGFSAED-------- 83 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~~g~~~~-~~~~~~i~~~~~~-------- 83 (190)
+.+++|+||+=-++||.+++|+|+||||||||++.|+|.. ..| +|.|.++|.+.. .......||..|+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~-t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK-TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc-ccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 4467999999999999999999999999999999999976 333 578999998876 4455555666554
Q ss_pred H------------------HHHHHHHHHHHHHHHHcCcce-----eecccCccHHHH-HHHHHhCCCC-CeEEEEeeCCc
Q 029613 84 R------------------TENIRRVGEVAKLFADAGLIC-----IASLISPYRKDR-DACRAMLPDS-NFIEVFMNMPL 138 (190)
Q Consensus 84 ~------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~-~il~vllDEP~ 138 (190)
. .+..+.+.++.++++.....+ ...-||..||+| .|+-.|+.+| .++ +|||||
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il--FLDEPT 958 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL--FLDEPT 958 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeE--EecCCC
Confidence 1 122233344443332221111 134499999999 5999999999 667 999999
Q ss_pred hhhhhcChHHHHHHHHcC
Q 029613 139 ELCEARDPKGLYKLARAG 156 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~~ 156 (190)
||||.+....+.+.+++.
T Consensus 959 SGLDsqaA~~i~~~lrkl 976 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKL 976 (1391)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 999999988888777763
No 387
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=4.3e-18 Score=137.64 Aligned_cols=49 Identities=2% Similarity=-0.003 Sum_probs=43.7
Q ss_pred eecccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 106 IASLISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 106 ~~~~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+..+|+|++|| ++|++++ .+|+++ ++||||++||...++.+++.+++.
T Consensus 163 ~~~~lS~G~~qr~~la~al~~~~~~~~~il--llDEPt~~ld~~~~~~~~~~l~~~ 216 (251)
T cd03273 163 SLTELSGGQRSLVALSLILALLLFKPAPMY--ILDEVDAALDLSHTQNIGRMIKTH 216 (251)
T ss_pred cccccCHHHHHHHHHHHHHHHhhccCCCEE--EEeCCCcCCCHHHHHHHHHHHHHH
Confidence 367799999999 6999887 577999 999999999999999999999875
No 388
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.72 E-value=2.9e-18 Score=135.48 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=85.1
Q ss_pred cccCcceeccCccccccccccccC-CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc-Ccc-ccc----------
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQ-KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD-GDN-LRH---------- 71 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~-~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~-g~~-~~~---------- 71 (190)
|+++|.. +|.+. ..++|... +|++++|+|+||||||||+++|++.+..+..+....+ ..+ +..
T Consensus 6 i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (213)
T cd03279 6 LELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFT 81 (213)
T ss_pred EEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEE
Confidence 5677776 55443 55667654 5999999999999999999999965532211111211 000 000
Q ss_pred --------ccccccCCChhhHHHHHHHH-HHHHHHHHHcCcceeecccCccHHHH-HHHHHhCC----------CCCeEE
Q 029613 72 --------GLNKNLGFSAEDRTENIRRV-GEVAKLFADAGLICIASLISPYRKDR-DACRAMLP----------DSNFIE 131 (190)
Q Consensus 72 --------~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~----------~~~il~ 131 (190)
......+...++. .+.+ ..... +. .-+...+..+|+|++|| ++|++++. +|+++
T Consensus 82 f~~~~~~~~~~r~~gl~~~~~---~~~~~l~~g~-l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~l- 155 (213)
T cd03279 82 FQLGGKKYRVERSRGLDYDQF---TRIVLLPQGE-FD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEAL- 155 (213)
T ss_pred EEECCeEEEEEEecCCCHHHH---HHhhhhhhcc-hH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEE-
Confidence 0000111222111 1111 00000 00 01123366799999999 69999974 56889
Q ss_pred EEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 132 VFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||+...+.+.+.+++..
T Consensus 156 -llDEp~~~lD~~~~~~~~~~l~~~~ 180 (213)
T cd03279 156 -FIDEGFGTLDPEALEAVATALELIR 180 (213)
T ss_pred -EEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988887643
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.6e-17 Score=142.79 Aligned_cols=141 Identities=20% Similarity=0.310 Sum_probs=107.1
Q ss_pred cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccCCChhhHH--------
Q 029613 19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLGFSAEDRT-------- 85 (190)
Q Consensus 19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~~~~~~~~-------- 85 (190)
.++++||++++|||++|.|.-|||+|-++++|.| +.+..+|+|.++|+++.. .....++|.++++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG-~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFG-ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhC-CCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 5789999999999999999999999999999999 446779999999987642 23345667766632
Q ss_pred ---HHH-----HHH-----------H-HHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 86 ---ENI-----RRV-----------G-EVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 86 ---~~~-----~~~-----------~-~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
+|+ .+. . ........+... ..+..||||.+|+ .+||.+..+|+++ +|||||-
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vL--ilDEPTR 430 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVL--ILDEPTR 430 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEE--EECCCCc
Confidence 111 110 0 111222222222 2367899999999 5999999999999 9999999
Q ss_pred hhhhcChHHHHHHHHcCCCCCcc
Q 029613 140 LCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 140 ~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
+.|.-.+..+|+.+++...+|..
T Consensus 431 GIDVGAK~eIy~li~~lA~~G~a 453 (500)
T COG1129 431 GIDVGAKAEIYRLIRELAAEGKA 453 (500)
T ss_pred CcccchHHHHHHHHHHHHHCCCE
Confidence 99999999999999986656643
No 390
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.70 E-value=1.5e-17 Score=126.11 Aligned_cols=144 Identities=18% Similarity=0.203 Sum_probs=94.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----cccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i~~ 79 (190)
|+++.|+... +.+-.+|.++..||++-++||||||||||+-.++|+ .+++|+|.++|.++... +...-.|
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm--~~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--TSGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCC--CCCCceEEECCcchhHHhHhHHHHHHHH
Confidence 4556666432 456678999999999999999999999999999996 47899999999987531 1110011
Q ss_pred Chhh------------------HHHHHHHHHHHHHHHHHc-CcceeecccCccHHHHH-HHHHhCC-------CCCeEEE
Q 029613 80 SAED------------------RTENIRRVGEVAKLFADA-GLICIASLISPYRKDRD-ACRAMLP-------DSNFIEV 132 (190)
Q Consensus 80 ~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~lS~g~kqr~-iarall~-------~~~il~v 132 (190)
..+. .......+.+++..+... .+-.....+|||++||. +|...++ ...++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LL-- 154 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLL-- 154 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeE--
Confidence 1111 011112233333333211 11223678999999994 6655443 33577
Q ss_pred EeeCCchhhhhcChHHHHHHHHc
Q 029613 133 FMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~ 155 (190)
++|||.++||......++..+.+
T Consensus 155 llDEP~~~LDvAQ~~aLdrll~~ 177 (248)
T COG4138 155 LLDEPMNSLDVAQQSALDRLLSA 177 (248)
T ss_pred EecCCCcchhHHHHHHHHHHHHH
Confidence 99999999998877777766655
No 391
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.69 E-value=1.4e-18 Score=137.41 Aligned_cols=144 Identities=14% Similarity=-0.001 Sum_probs=84.5
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-C--C-c--EEEEcCccccc-------
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-G--K-L--SYILDGDNLRH------- 71 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~--~-g--~i~~~g~~~~~------- 71 (190)
|+++|.. +|++..+++++++ ++++|+|||||||||++++|.-.+-.. . . . .+.++......
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 79 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSV 79 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEE
Confidence 4566665 7888999999988 899999999999999999998432100 0 0 0 00111110000
Q ss_pred --ccccc--------cCCChhhHHHHHHHHHHHHHHHHHcC-cceeecccCccHHHH-HHHHHhCC----CCCeEEEEee
Q 029613 72 --GLNKN--------LGFSAEDRTENIRRVGEVAKLFADAG-LICIASLISPYRKDR-DACRAMLP----DSNFIEVFMN 135 (190)
Q Consensus 72 --~~~~~--------i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lS~g~kqr-~iarall~----~~~il~vllD 135 (190)
..... .++...... .+-...++...+.... ....+..+|+|++|| .+|++++. +|+++ +||
T Consensus 80 ~~~~~~~~~~~~l~~~g~~~~~~~-~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~il--ilD 156 (212)
T cd03274 80 EVHFQEIIDKPLLKSKGIDLDHNR-FLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLY--VMD 156 (212)
T ss_pred EEEEEeCCCHHHHHHCCcCCCCCc-eEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEE--EEc
Confidence 00000 000000000 0000001111111111 112256799999999 69999863 57999 999
Q ss_pred CCchhhhhcChHHHHHHHHcCC
Q 029613 136 MPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~~ 157 (190)
||+++||+..++.+++.+++-.
T Consensus 157 EPt~gLD~~~~~~l~~~l~~~~ 178 (212)
T cd03274 157 EIDAALDFRNVSIVANYIKERT 178 (212)
T ss_pred CCCcCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999998743
No 392
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=5.1e-17 Score=126.56 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=104.2
Q ss_pred ccccCcceecc----CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCccccc-----
Q 029613 4 VGNSTNIFWQE----SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRH----- 71 (190)
Q Consensus 4 ~l~~~~l~~~~----~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~----- 71 (190)
++.++|++..+ |.+++++++|+++.+||+-+|+|+||||||-++|+|+|.....- .....|++.++..
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 78899998876 45789999999999999999999999999999999999763211 1123444433211
Q ss_pred ---ccccccCCChhh---------H-----H----------HHHHHH----HHHHHHHHHcCcc-------eeecccCcc
Q 029613 72 ---GLNKNLGFSAED---------R-----T----------ENIRRV----GEVAKLFADAGLI-------CIASLISPY 113 (190)
Q Consensus 72 ---~~~~~i~~~~~~---------~-----~----------~~~~~~----~~~~~~~~~~~~~-------~~~~~lS~g 113 (190)
....++++..++ . . ++..++ .+..+++...|.. .++.++..|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG 162 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEG 162 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence 001111111111 0 0 011111 1233445555553 358889999
Q ss_pred HHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 114 RKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 114 ~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+-|+ .||.|++.+|.++ +.||||+.+++-...+++.++.+
T Consensus 163 E~QKVMIA~A~AnqPrLL--IADEPTN~~e~~Tq~QifRLLs~ 203 (330)
T COG4170 163 ECQKVMIAIALANQPRLL--IADEPTNSMEPTTQAQIFRLLSR 203 (330)
T ss_pred cceeeeeehhhccCCceE--eccCCCcccCccHHHHHHHHHHH
Confidence 9999 5999999999999 99999999999999998877755
No 393
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=6.2e-16 Score=139.84 Aligned_cols=161 Identities=54% Similarity=0.856 Sum_probs=137.0
Q ss_pred ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHH
Q 029613 20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFA 99 (190)
Q Consensus 20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
....+..-.++.++++.|.+||||||+++.|...+...+.+.++++++.++..+....+|.++++.++++++..++..+.
T Consensus 450 ~~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~ 529 (632)
T PRK05506 450 EARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMA 529 (632)
T ss_pred HHHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444455578999999999999999999999988555667789999998776655667888888888888888888887
Q ss_pred HcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEE
Q 029613 100 DAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCK 179 (190)
Q Consensus 100 ~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 179 (190)
..|...++..+++...+|..+|+++.+..+..++||.|...|..|+.+.++...+.++++.+.+...+ |++|..+++++
T Consensus 530 ~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~-y~~P~~a~~~I 608 (632)
T PRK05506 530 DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSP-YEAPENPELRL 608 (632)
T ss_pred hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccC-CCCCCCCeEEE
Confidence 88888888888888889999999988767766799999999999999999977778899999999999 99999999999
Q ss_pred ec
Q 029613 180 KK 181 (190)
Q Consensus 180 ~~ 181 (190)
|-
T Consensus 609 d~ 610 (632)
T PRK05506 609 DT 610 (632)
T ss_pred eC
Confidence 85
No 394
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.67 E-value=1.4e-16 Score=135.50 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=81.9
Q ss_pred cccccccc-----CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh--------HHH
Q 029613 20 LERQKLLN-----QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED--------RTE 86 (190)
Q Consensus 20 l~~~sl~i-----~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~--------~~~ 86 (190)
+.++.|++ ..||+++++||||-||||++++|+|.+ .|.+|. ..++.- +|.||- ..+
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg~----~~~~~v------SyKPQyI~~~~~gtV~~ 420 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEGS----EEDLKV------SYKPQYISPDYDGTVED 420 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccc-cCCCCC----CccceE------eecceeecCCCCCcHHH
Confidence 34555655 567899999999999999999999988 677774 222211 122211 111
Q ss_pred HHHHHHH--------HHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613 87 NIRRVGE--------VAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA 153 (190)
Q Consensus 87 ~~~~~~~--------~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~ 153 (190)
.+..... ..+++..+.+. ..+..||||+.|| ++|.+|..+++++ +||||.+.||...+-..-..+
T Consensus 421 ~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlY--llDEPSA~LDvEqR~~vakvI 498 (591)
T COG1245 421 LLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY--LLDEPSAYLDVEQRIIVAKVI 498 (591)
T ss_pred HHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEE--EecCchhhccHHHHHHHHHHH
Confidence 1111100 11222222222 2377899999999 6999999999999 999999999988876666655
Q ss_pred Hc
Q 029613 154 RA 155 (190)
Q Consensus 154 ~~ 155 (190)
++
T Consensus 499 RR 500 (591)
T COG1245 499 RR 500 (591)
T ss_pred HH
Confidence 54
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.66 E-value=2.7e-16 Score=123.57 Aligned_cols=125 Identities=17% Similarity=0.181 Sum_probs=75.8
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHH----HHHhhCCCcEEEEcCcccccc-cccccCCChh-------------hHH
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVN----KELYSRGKLSYILDGDNLRHG-LNKNLGFSAE-------------DRT 85 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~----g~l~~~~~g~i~~~g~~~~~~-~~~~i~~~~~-------------~~~ 85 (190)
++++.+| +++|+||||||||||+++|. |.. .++.+.+..+.+.+... ....+++..+ ...
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~-~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGEL-PPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCC-CcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 4556666 99999999999999999996 433 33333222111111100 0000000000 011
Q ss_pred HHHHHH--HHHHHHHHHcCcceeecccCccHHHH-------HHHHHhCCCCCeEEEEeeCCchhhhhcChH-HHHHHHHc
Q 029613 86 ENIRRV--GEVAKLFADAGLICIASLISPYRKDR-------DACRAMLPDSNFIEVFMNMPLELCEARDPK-GLYKLARA 155 (190)
Q Consensus 86 ~~~~~~--~~~~~~~~~~~~~~~~~~lS~g~kqr-------~iarall~~~~il~vllDEP~~~ld~~~~~-~~~~~~~~ 155 (190)
+++... .++...+ ...+..+|+|++|| ++|++++.+|+++ +||||+++||+..++ .+.+.+++
T Consensus 95 ~~~~~~~~~~~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~il--llDEP~~~LD~~~~~~~l~~~l~~ 167 (204)
T cd03240 95 ENVIFCHQGESNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGIL--ALDEPTTNLDEENIEESLAEIIEE 167 (204)
T ss_pred hceeeechHHHHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCEE--EEcCCccccCHHHHHHHHHHHHHH
Confidence 111000 0111111 23466899999995 5899999999999 999999999999999 99988876
Q ss_pred CC
Q 029613 156 GK 157 (190)
Q Consensus 156 ~~ 157 (190)
..
T Consensus 168 ~~ 169 (204)
T cd03240 168 RK 169 (204)
T ss_pred HH
Confidence 43
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.7e-16 Score=133.60 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=104.0
Q ss_pred cccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCCh
Q 029613 3 TVGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSA 81 (190)
Q Consensus 3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~ 81 (190)
|++.+.+++|.| +.++.+..++|-|.--..++|+||||.|||||+++|.|.+ .|..|..+-+.+ +. +|+-.
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl-~P~~GE~RKnhr-L~------iG~Fd 656 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL-DPNDGELRKNHR-LR------IGWFD 656 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC-CCCcchhhccce-ee------eechh
Confidence 478899999999 5578899999999999999999999999999999999998 677775432211 10 11111
Q ss_pred hh----------HHHHHHHHH-----HHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613 82 ED----------RTENIRRVG-----EVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL 140 (190)
Q Consensus 82 ~~----------~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ 140 (190)
+. ..+++.+.. .....+..+|+. .-...||||++-| ++|--.+..|+++ ||||||++
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl--ILDEPTNN 734 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL--ILDEPTNN 734 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE--EecCCCCC
Confidence 11 112222211 111222233332 1256799999999 5999999999999 99999999
Q ss_pred hhhcChHHHHHHHHc
Q 029613 141 CEARDPKGLYKLARA 155 (190)
Q Consensus 141 ld~~~~~~~~~~~~~ 155 (190)
||......+-+.+.+
T Consensus 735 LDIESIDALaEAIne 749 (807)
T KOG0066|consen 735 LDIESIDALAEAINE 749 (807)
T ss_pred cchhhHHHHHHHHHh
Confidence 999999888888886
No 397
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.63 E-value=1.2e-15 Score=131.74 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=99.2
Q ss_pred cccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC---------ccccc--c
Q 029613 5 GNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG---------DNLRH--G 72 (190)
Q Consensus 5 l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g---------~~~~~--~ 72 (190)
|.++|+-.-- .+..++..++|.+++|-.+.|+||||||||+|.|+|.|++ +...|...+-. ++... .
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW-Pvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW-PVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC-cccCCeeecCCCcceEeccCCCccCcCc
Confidence 3445554433 3344679999999999999999999999999999999988 44444332211 11110 1
Q ss_pred cccc------------cCCChhhHHHHHHHHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 73 LNKN------------LGFSAEDRTENIRRVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 73 ~~~~------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
++.+ -+|..++....+.. -.+..++++-+-.+ +-..||||+||| .+||.+.++|.+. +||
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~-v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkya--lLD 637 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDI-VHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYA--LLD 637 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHH-hhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchh--hhh
Confidence 1111 23444444332222 22233444433222 345699999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcC
Q 029613 136 MPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~ 156 (190)
|.|++........+|+.++.-
T Consensus 638 EcTsAvsidvE~~i~~~ak~~ 658 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAAKDA 658 (728)
T ss_pred hhhcccccchHHHHHHHHHhc
Confidence 999999888888899998873
No 398
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.63 E-value=2.2e-15 Score=117.96 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=78.4
Q ss_pred ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC----CcE----EEEcCccc---ccccccccCCChhhHHHHH
Q 029613 20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG----KLS----YILDGDNL---RHGLNKNLGFSAEDRTENI 88 (190)
Q Consensus 20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~----~g~----i~~~g~~~---~~~~~~~i~~~~~~~~~~~ 88 (190)
++++++++.+| +.+|+||||||||||+.+|.-.+.... .|. +.-.|.+- ..... .-+........ .
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~-~~~~~~~~~~~-~ 88 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLK-NQGLDANPLCV-L 88 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEE-cCCccCCcCCH-H
Confidence 45667777776 778999999999999999975442110 010 00011110 00000 00000000000 0
Q ss_pred HHHHHHHHHHHHcC-cceeecccCccHHHH-HHHHHh----CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 89 RRVGEVAKLFADAG-LICIASLISPYRKDR-DACRAM----LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~lS~g~kqr-~iaral----l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
. ..++..++.... ....+..+|+||+|| ++|+++ +.+|+++ +||||+++||...+..+.+.+++.
T Consensus 89 ~-~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~il--llDEP~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 89 S-QDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFR--CLDEFDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred H-HHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEE--EecCcccccCHHHHHHHHHHHHHH
Confidence 0 012222222211 233477899999999 599998 6899999 999999999999999999888763
No 399
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.63 E-value=6.5e-15 Score=131.32 Aligned_cols=158 Identities=44% Similarity=0.653 Sum_probs=127.7
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG 102 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (190)
--..++|++++|+|++||||||+++.|+..+.. .+...++++++.+...+....+|...++..+..++...+..+...|
T Consensus 386 ~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~G 465 (568)
T PRK05537 386 PPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNG 465 (568)
T ss_pred ccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 445578999999999999999999999998843 4444688899888766666678888888877777776666565677
Q ss_pred cceeecccCccHHHHHHHHHhCCCC-CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEec
Q 029613 103 LICIASLISPYRKDRDACRAMLPDS-NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK 181 (190)
Q Consensus 103 ~~~~~~~lS~g~kqr~iarall~~~-~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~ 181 (190)
...+....++....|.-.|.++.+. .+++|+||.|...|..|.++.+++..+.+.++.+.+...+ |+.|..+|+++|-
T Consensus 466 g~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~-yy~p~~Adl~IDt 544 (568)
T PRK05537 466 GIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDP-YEPPANPELVIDT 544 (568)
T ss_pred CEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhcccccccc-ccCCCCCcEEEEC
Confidence 7777787889888887777777663 4666799999999999998888866666788899999999 9999999999994
Q ss_pred C
Q 029613 182 I 182 (190)
Q Consensus 182 ~ 182 (190)
-
T Consensus 545 ~ 545 (568)
T PRK05537 545 T 545 (568)
T ss_pred C
Confidence 3
No 400
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.59 E-value=7e-15 Score=136.98 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=49.0
Q ss_pred HHHHcCcce-----eecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 97 LFADAGLIC-----IASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 97 ~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
.+...++.. .+..||+||+|| .+|++++.+| +++ +|||||++||..++..+.+.+++..
T Consensus 813 ~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~ll--ILDEPtsGLD~~~~~~L~~~L~~l~ 880 (943)
T PRK00349 813 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLY--ILDEPTTGLHFEDIRKLLEVLHRLV 880 (943)
T ss_pred HHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEE--EEECCCCCCCHHHHHHHHHHHHHHH
Confidence 444555532 367799999999 6999999999 899 9999999999999999998887643
No 401
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.57 E-value=8.1e-15 Score=113.84 Aligned_cols=148 Identities=15% Similarity=0.152 Sum_probs=104.9
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----------
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----------- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----------- 71 (190)
.+++.++.++|. ..+++-|+|++++.|.-..++|.||||||||+|+|+|.- -.+.|.|.+.|.+.-+
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh-mv~~~~v~VlgrsaFhDt~l~~Sgdl~ 91 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH-MVGGGVVQVLGRSAFHDTSLESSGDLS 91 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc-cccCCeEEEcCcCccccccccccCcee
Confidence 478999999996 468999999999999999999999999999999999964 3455778887765321
Q ss_pred ----ccccccCCCh------hh-HHHHHHHH--------HHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613 72 ----GLNKNLGFSA------ED-RTENIRRV--------GEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIE 131 (190)
Q Consensus 72 ----~~~~~i~~~~------~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~ 131 (190)
+.....++.. +- ..+.+..+ ..+..++ +..+.--...+|.|||+| .|+..|++.-+++
T Consensus 92 YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iL-DIdl~WRmHkvSDGqrRRVQicMGLL~PfkVL- 169 (291)
T KOG2355|consen 92 YLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDIL-DIDLRWRMHKVSDGQRRRVQICMGLLKPFKVL- 169 (291)
T ss_pred EecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhhe-eccceEEEeeccccchhhhHHHHhcccceeEE-
Confidence 0111111111 00 11111111 1111111 122233367799999999 5999999988888
Q ss_pred EEeeCCchhhhhcChHHHHHHHHc
Q 029613 132 VFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 132 vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+|||-|--||.-.+..+++.+++
T Consensus 170 -LLDEVTVDLDVlARadLLeFlke 192 (291)
T KOG2355|consen 170 -LLDEVTVDLDVLARADLLEFLKE 192 (291)
T ss_pred -EeeeeEeehHHHHHHHHHHHHHH
Confidence 99999999999999999988876
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.56 E-value=9.9e-15 Score=124.40 Aligned_cols=141 Identities=23% Similarity=0.221 Sum_probs=86.6
Q ss_pred cceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC-------------cccccc--
Q 029613 9 NIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG-------------DNLRHG-- 72 (190)
Q Consensus 9 ~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g-------------~~~~~~-- 72 (190)
++..+|+.. ..|-++ ...++|.+++|+|+||-||||.+|+|+|.+ .|+-| ..++ ..+..-
T Consensus 79 e~vHRYg~NgFkL~~L-P~pr~G~V~GilG~NGiGKsTalkILaGel-~PNLG--~~~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVNGFKLYRL-PTPRPGKVVGILGPNGIGKSTALKILAGEL-KPNLG--RYEDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred cceeeccCCceEEecC-CCCCCCcEEEEEcCCCccHHHHHHHHhCcc-ccCCC--CCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 355666532 122221 234789999999999999999999999998 55544 2222 111100
Q ss_pred -c-cccc--CCChh-------h----HHHHHHHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613 73 -L-NKNL--GFSAE-------D----RTENIRRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 73 -~-~~~i--~~~~~-------~----~~~~~~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i 129 (190)
+ ...+ ...+| . ..+.++.. +...+....+++.. -+..||||+-|| +||.++++++++
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCE
Confidence 0 0000 00011 0 01111111 11222333344432 278899999999 799999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+ ++|||+|-||.+.+-..-..+++
T Consensus 235 Y--~FDEpsSyLDi~qRl~~ar~Ire 258 (591)
T COG1245 235 Y--FFDEPSSYLDIRQRLNAARVIRE 258 (591)
T ss_pred E--EEcCCcccccHHHHHHHHHHHHH
Confidence 9 99999999999887776666666
No 403
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.55 E-value=3.7e-15 Score=120.30 Aligned_cols=51 Identities=8% Similarity=-0.041 Sum_probs=43.9
Q ss_pred cccCccHHHH-HHHHHhCCC----CCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 108 SLISPYRKDR-DACRAMLPD----SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 108 ~~lS~g~kqr-~iarall~~----~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
..+|+|++|| .+|++++.+ |+++ +||||+++||...+..+.+.+++....|
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~l--llDEPt~~LD~~~~~~l~~~i~~~~~~g 209 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFF--VLDEVDAALDNTNVGKVASYIREQAGPN 209 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEE--EEecccccCCHHHHHHHHHHHHHhccCC
Confidence 6799999999 699999864 8999 9999999999999999999888754333
No 404
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=1.6e-14 Score=134.40 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=43.4
Q ss_pred ecccCccHHHH-HHHHHhCC---CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 107 ASLISPYRKDR-DACRAMLP---DSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 107 ~~~lS~g~kqr-~iarall~---~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+..||+||+|| .+|++++. +|+++ +|||||++||+.+.+.+.+.+++.
T Consensus 826 ~~tLSgGe~QRl~LA~aL~~~~~~p~ll--ILDEPtsgLD~~~~~~L~~~L~~l 877 (924)
T TIGR00630 826 ATTLSGGEAQRIKLAKELSKRSTGRTLY--ILDEPTTGLHFDDIKKLLEVLQRL 877 (924)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence 67799999999 59999997 48999 999999999999999999888764
No 405
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.55 E-value=4.3e-13 Score=102.74 Aligned_cols=151 Identities=33% Similarity=0.507 Sum_probs=106.3
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCccee
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICI 106 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (190)
.++|.+++++|++||||||+++.|+..+...+.+.++++++.+...+. ..++......+...+...+...+...+...+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI 82 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVI 82 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999998866777888999887754322 1234443333333333444444444555455
Q ss_pred ecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613 107 ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI 182 (190)
Q Consensus 107 ~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~ 182 (190)
....+....-+..++.++.. ++.++||.|...+-.|..+.++.....+.+..+.+...+ +++|. .|+++|-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~-~~~~~-Ad~vI~~~ 154 (176)
T PRK05541 83 VTTISMFDEIYAYNRKHLPN--YFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIP-FDEPK-ADLVIDNS 154 (176)
T ss_pred EEeCCcHHHHHHHHHhhcCC--eEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCc-ccCCC-CCEEEeCC
Confidence 54444433344677777653 345699999999999998888877777888888889999 77776 48888854
No 406
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.51 E-value=6.9e-14 Score=110.65 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=76.1
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC----C--------------cE--EEEcCcccccccccccCCC
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG----K--------------LS--YILDGDNLRHGLNKNLGFS 80 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~----~--------------g~--i~~~g~~~~~~~~~~i~~~ 80 (190)
+++.+++.+| +.+|+|+||||||||+.+|+-.+.... . +. +.+++.+..........+.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~ 93 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFL 93 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEE
Confidence 4556666554 668999999999999999987662111 0 00 1111111000111111123
Q ss_pred hhhHHHHHHHHHHHHHHHHHcC----c-ceeecccCccHHHHH-HH----HHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613 81 AEDRTENIRRVGEVAKLFADAG----L-ICIASLISPYRKDRD-AC----RAMLPDSNFIEVFMNMPLELCEARDPKGLY 150 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~lS~g~kqr~-ia----rall~~~~il~vllDEP~~~ld~~~~~~~~ 150 (190)
.++....+..+... +.+.... . ...+..+|+||+|+. ++ ++++.+|+++ ++|||+++||+..+..++
T Consensus 94 ~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~ll--llDEP~~~LD~~~~~~i~ 170 (213)
T cd03277 94 PQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFR--VVDEINQGMDPTNERKVF 170 (213)
T ss_pred chHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEE--EEecccccCCHHHHHHHH
Confidence 33322222221111 1111111 1 123668999999984 33 4447899999 999999999999999999
Q ss_pred HHHHcCC
Q 029613 151 KLARAGK 157 (190)
Q Consensus 151 ~~~~~~~ 157 (190)
+.+.+-.
T Consensus 171 ~~l~~~~ 177 (213)
T cd03277 171 DMLVETA 177 (213)
T ss_pred HHHHHHh
Confidence 8887643
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.51 E-value=3.2e-14 Score=138.32 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=50.3
Q ss_pred HHHHHcCcce-----eecccCccHHHH-HHHHHhC---CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 96 KLFADAGLIC-----IASLISPYRKDR-DACRAML---PDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 96 ~~~~~~~~~~-----~~~~lS~g~kqr-~iarall---~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
..+...++.. .+..||+||+|| .+|++++ .+|+++ +|||||++||..+.+.+.+.+++....|
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LL--ILDEPTsGLD~~~~~~Ll~lL~~L~~~G 862 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLY--VLDEPTTGLHTHDIKALIYVLQSLTHQG 862 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEE--EEeCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 3445555532 356799999999 6999997 689999 9999999999999999998887643334
No 408
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.50 E-value=4.6e-14 Score=121.18 Aligned_cols=154 Identities=16% Similarity=0.197 Sum_probs=118.7
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc-cc-----ccccc
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL-RH-----GLNKN 76 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~-~~-----~~~~~ 76 (190)
++++++++..-. +...++++||+++.|||++|.|-.|-|-+.|+.+|+|+. ++.+|.|.++|.++ .. -....
T Consensus 257 vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~~~~G~I~l~G~~v~~~~~~~~~r~~G 335 (501)
T COG3845 257 VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-KPASGRILLNGKDVLGRLSPRERRRLG 335 (501)
T ss_pred EEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-ccCCceEEECCEeccccCCHHHHHhcC
Confidence 688999988764 468999999999999999999999999999999999966 55669999999986 11 11234
Q ss_pred cCCChhhHH-----------HHH------------------HHHH-HHHHHHHHcCcc-----eeecccCccHHHHH-HH
Q 029613 77 LGFSAEDRT-----------ENI------------------RRVG-EVAKLFADAGLI-----CIASLISPYRKDRD-AC 120 (190)
Q Consensus 77 i~~~~~~~~-----------~~~------------------~~~~-~~~~~~~~~~~~-----~~~~~lS~g~kqr~-ia 120 (190)
++|.|+++. +|+ ..+. ....+...+.+. ..+..||||..||. +|
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Ila 415 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILA 415 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhh
Confidence 667777641 111 0111 122334444443 23667999999995 99
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
|.+..+|+++ ++..||.+||.-..+.+++.+.+.+-.|
T Consensus 416 REl~~~p~lL--I~~qPTrGLDvgA~~~I~~~l~e~r~~G 453 (501)
T COG3845 416 RELARRPDLL--IAAQPTRGLDVGAIEFIHERLLELRDAG 453 (501)
T ss_pred hhhccCCCEE--EEcCCCccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999999999999998766666
No 409
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.49 E-value=1.5e-14 Score=113.27 Aligned_cols=117 Identities=12% Similarity=0.054 Sum_probs=71.4
Q ss_pred cccccccccCCcc-EEEEECCCCCcHHHHHHHHH-HHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHH
Q 029613 19 RLERQKLLNQKGC-VVWITGLSGSGKSTLAFSVN-KELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAK 96 (190)
Q Consensus 19 ~l~~~sl~i~~Ge-ii~L~G~nGsGKSTLlr~l~-g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 96 (190)
.+-++||++.+|+ +++|+||||||||||+|.|. ..+ ....|...-..... .+++.++... .+.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~-~~~~G~~vp~~~~~------~~~~~~~~~~----~lg---- 80 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTL-MAQSGLPIPAAEGS------SLPVFENIFA----DIG---- 80 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHH-HHHcCCCccccccc------cCcCccEEEE----ecC----
Confidence 4557899999995 89999999999999999998 322 12222100011111 0111111100 000
Q ss_pred HHHHcCcceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHH-HHHc
Q 029613 97 LFADAGLICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYK-LARA 155 (190)
Q Consensus 97 ~~~~~~~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~~-~~~~ 155 (190)
....+......+|.+++|+. ++++ +.+|+++ ++|||++++|+.....+.. .+++
T Consensus 81 --~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~ll--llDEp~~glD~~~~~~i~~~~l~~ 136 (200)
T cd03280 81 --DEQSIEQSLSTFSSHMKNIARILQH-ADPDSLV--LLDELGSGTDPVEGAALAIAILEE 136 (200)
T ss_pred --chhhhhcCcchHHHHHHHHHHHHHh-CCCCcEE--EEcCCCCCCCHHHHHHHHHHHHHH
Confidence 00011122346799999994 6666 5789999 9999999999998887753 3443
No 410
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.9e-13 Score=117.85 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=102.6
Q ss_pred cccccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC
Q 029613 3 TVGNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS 80 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~ 80 (190)
|.+++.++++.|... +.+.++++.++.-.-++++|+||+||||+++++.+-+ .+.+|.+.+.++-- ++|.
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l-~~~rgi~~~~~r~r-------i~~f 432 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL-TPTRGIVGRHPRLR-------IKYF 432 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccC-Ccccceeeecccce-------ecch
Confidence 467889999999754 4889999999999999999999999999999999987 66677665554311 0111
Q ss_pred hhh----HHHHHHHH------------HHHHHHHHHcCcce-----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 81 AED----RTENIRRV------------GEVAKLFADAGLIC-----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 81 ~~~----~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
.+- ...+...+ .++..-+..+|+.. -...||||||-| ++|.....+|.++ +|||||
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlL--VLDEPT 510 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLL--VLDEPT 510 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEE--EecCCC
Confidence 110 00000000 11222333444421 145699999999 6999999999999 999999
Q ss_pred hhhhhcChHHHHHHHHc
Q 029613 139 ELCEARDPKGLYKLARA 155 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~ 155 (190)
+.||......+-..++.
T Consensus 511 NhLD~dsl~AL~~Al~~ 527 (582)
T KOG0062|consen 511 NHLDRDSLGALAKALKN 527 (582)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99998888888877764
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.46 E-value=3e-14 Score=111.64 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=66.3
Q ss_pred cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613 23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG 102 (190)
Q Consensus 23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (190)
.++++.+|++++|+|||||||||++++|++.......|.+.. .... .+++..+.... + -....
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~~~~------~i~~~dqi~~~-~---------~~~d~ 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-AESA------SIPLVDRIFTR-I---------GAEDS 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-cccc------ccCCcCEEEEE-e---------cCccc
Confidence 355566889999999999999999999996542222332111 1110 11111110000 0 00001
Q ss_pred cceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613 103 LICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL 152 (190)
Q Consensus 103 ~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~ 152 (190)
.......++.+++|...+.+++.+|+++ ++|||++++|+.....+...
T Consensus 85 i~~~~s~~~~e~~~l~~i~~~~~~~~ll--llDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 85 ISDGRSTFMAELLELKEILSLATPRSLV--LIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred ccCCceeHHHHHHHHHHHHHhccCCeEE--EEecCCCCCCHHHHHHHHHH
Confidence 1111234566666666667778899999 99999999999887766543
No 412
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.46 E-value=1.8e-13 Score=115.80 Aligned_cols=137 Identities=19% Similarity=0.173 Sum_probs=92.7
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-------hCCCcEEEEcCcccccccccc--cCCChhhHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-------SRGKLSYILDGDNLRHGLNKN--LGFSAEDRTEN 87 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-------~~~~g~i~~~g~~~~~~~~~~--i~~~~~~~~~~ 87 (190)
..+++|+||.+++|++++|+|+|||||||++++|.|... .|++|.+.+--+.+....... ..+......+.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 357899999999999999999999999999999999753 244565554433322111100 01111112222
Q ss_pred HHH----HHHHHHHHHHcCccee------ecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChH----HHHHH
Q 029613 88 IRR----VGEVAKLFADAGLICI------ASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPK----GLYKL 152 (190)
Q Consensus 88 ~~~----~~~~~~~~~~~~~~~~------~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~----~~~~~ 152 (190)
+.. ++....++...|+.+. ...||.||+.|. +|+.+...|+++ +.||=.+.||+.... .+.++
T Consensus 476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~--~iDEF~AhLD~~TA~rVArkisel 553 (593)
T COG2401 476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVL--LIDEFAAHLDELTAVRVARKISEL 553 (593)
T ss_pred HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcE--EhhhhhhhcCHHHHHHHHHHHHHH
Confidence 211 1223455666666542 567999999995 999999999999 999999999988654 45555
Q ss_pred HHc
Q 029613 153 ARA 155 (190)
Q Consensus 153 ~~~ 155 (190)
.++
T Consensus 554 aRe 556 (593)
T COG2401 554 ARE 556 (593)
T ss_pred HHH
Confidence 554
No 413
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.43 E-value=2.8e-13 Score=102.66 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=70.2
Q ss_pred cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613 23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG 102 (190)
Q Consensus 23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (190)
.+..+.++.++.|+|||||||||+++++...+-.. .+...- ......+. +.+..... +
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~-~~~~~~-~~~~~~g~-----~~~~~~~~-~-------------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGA-QSATRR-RSGVKAGC-----IVAAVSAE-L-------------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhc-chhhhc-cCcccCCC-----cceeeEEE-E--------------
Confidence 34445556799999999999999999987665222 111111 11111000 00000000 0
Q ss_pred cceeecccCccHHHH-HHHHHhCC----CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 103 LICIASLISPYRKDR-DACRAMLP----DSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 103 ~~~~~~~lS~g~kqr-~iarall~----~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
......+|+|++|+ .+++++.. +|+++ ++|||++++|+.+...+.+.+.+.
T Consensus 72 -i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ll--llDEp~~gld~~~~~~l~~~l~~~ 127 (162)
T cd03227 72 -IFTRLQLSGGEKELSALALILALASLKPRPLY--ILDEIDRGLDPRDGQALAEAILEH 127 (162)
T ss_pred -ehheeeccccHHHHHHHHHHHHhcCCCCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 11112389999999 59999976 77999 999999999999999888887753
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=8.9e-14 Score=109.35 Aligned_cols=114 Identities=10% Similarity=-0.039 Sum_probs=71.7
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA 95 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 95 (190)
...+.+++++++..|++++|+||||+||||+++++++...-..-|. ++..... . +..+.++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~-~vpa~~~------~-----------l~~~d~I~ 76 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC-FVPAEYA------T-----------LPIFNRLL 76 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC-Ccchhhc------C-----------ccChhhee
Confidence 4568899999999999999999999999999999998653111121 1100000 0 00000111
Q ss_pred HHHHHc-CcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613 96 KLFADA-GLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGL 149 (190)
Q Consensus 96 ~~~~~~-~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~ 149 (190)
..+... ....-.+.+|.+++|...+.+++.+++++ +||||++++++.+...+
T Consensus 77 ~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lv--llDE~~~gt~~~~~~~l 129 (204)
T cd03282 77 SRLSNDDSMERNLSTFASEMSETAYILDYADGDSLV--LIDELGRGTSSADGFAI 129 (204)
T ss_pred EecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEE--EeccccCCCCHHHHHHH
Confidence 111100 11112345677888776666678889999 99999999988765443
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.5e-13 Score=115.81 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=96.6
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccc--------ccc
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHG--------LNK 75 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~--------~~~ 75 (190)
|.++|.+.+..++..+.+.|+.|-.|..++|+||||-|||||++.|+..-. -|....+.+....+... +..
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~a 344 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKA 344 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHh
Confidence 678888888888999999999999999999999999999999999987642 23344455554433210 000
Q ss_pred c---cCCChh-------------hHHHHHHHHH-------------HHHHHHHHcCcce-----eecccCccHHHH-HHH
Q 029613 76 N---LGFSAE-------------DRTENIRRVG-------------EVAKLFADAGLIC-----IASLISPYRKDR-DAC 120 (190)
Q Consensus 76 ~---i~~~~~-------------~~~~~~~~~~-------------~~~~~~~~~~~~~-----~~~~lS~g~kqr-~ia 120 (190)
+ ..+..+ ...+.+..+. ....++.-+|... ....+|||-|.| .+|
T Consensus 345 D~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLA 424 (807)
T KOG0066|consen 345 DKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLA 424 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHH
Confidence 0 000000 0011111110 1112222222221 134589998999 599
Q ss_pred HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLAR 154 (190)
Q Consensus 121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~ 154 (190)
|||..+|-++ +|||||+.||...+..+-..++
T Consensus 425 RALflEPTLL--MLDEPTNHLDLNAVIWLdNYLQ 456 (807)
T KOG0066|consen 425 RALFLEPTLL--MLDEPTNHLDLNAVIWLDNYLQ 456 (807)
T ss_pred HHHhcCceee--eecCCccccccceeeehhhHHh
Confidence 9999999999 9999999999888766654444
No 416
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.40 E-value=8.8e-13 Score=103.30 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=31.3
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+++++++.. |++++|+||||||||||+|+|++..
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 45678777776 6999999999999999999999866
No 417
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2e-12 Score=96.04 Aligned_cols=142 Identities=22% Similarity=0.277 Sum_probs=102.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCcce
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGLIC 105 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (190)
.++.++|.+||||||+.++|...+. --+++|++++.. ..+.+.+.++++..|+..++.....-...+-..
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~-----~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~v 87 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG-----LKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGV 87 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC-----CcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeE
Confidence 3788999999999999999988772 228899998653 455677888899888888766554443455566
Q ss_pred eecccCccHHHHHHHHHhCC--------CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCce
Q 029613 106 IASLISPYRKDRDACRAMLP--------DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRT 177 (190)
Q Consensus 106 ~~~~lS~g~kqr~iarall~--------~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ 177 (190)
+.++.+...+.|+|.|.-+. +..+..++|-..+..+-.|. .-|.||++..+.++++ |+..+.|+.
T Consensus 88 VlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl------~~R~gHFMp~~lleSQ-f~~LE~p~~ 160 (191)
T KOG3354|consen 88 VLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRL------KKRKGHFMPADLLESQ-FATLEAPDA 160 (191)
T ss_pred EEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHH------hhcccccCCHHHHHHH-HHhccCCCC
Confidence 67778888888999998444 34555557766554443222 2357999999999999 998888875
Q ss_pred EEecCCccc
Q 029613 178 CKKKISATT 186 (190)
Q Consensus 178 ~~~~~~~~~ 186 (190)
|+.|..+
T Consensus 161 --~e~div~ 167 (191)
T KOG3354|consen 161 --DEEDIVT 167 (191)
T ss_pred --CccceEE
Confidence 4444433
No 418
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.38 E-value=1e-12 Score=101.16 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=40.4
Q ss_pred cCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 110 ISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 110 lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|+|++|| .+||+++ .+|+++ ++|||++++|......+.+.+++.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~ll--ilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFY--VLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence 89999999 5999885 689999 999999999999999998888764
No 419
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.33 E-value=9.4e-13 Score=104.83 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=72.9
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA 95 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 95 (190)
...+.++++++..++++++|+||||+||||+++.++-...-...|- ++-.+.. .++ .+.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~-~vpa~~~------~~~--------------~~~ 74 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC-FVPCDSA------DIP--------------IVD 74 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC-CcCcccE------EEe--------------ccc
Confidence 3467899999999999999999999999999999874321111110 1100000 000 000
Q ss_pred HHHHHcCcce-eecccCccHHHH-HHHHHh--CCCCCeEEEEeeCC---chhhhhcChHHHH-HHHH
Q 029613 96 KLFADAGLIC-IASLISPYRKDR-DACRAM--LPDSNFIEVFMNMP---LELCEARDPKGLY-KLAR 154 (190)
Q Consensus 96 ~~~~~~~~~~-~~~~lS~g~kqr-~iaral--l~~~~il~vllDEP---~~~ld~~~~~~~~-~~~~ 154 (190)
.++...++.. ....+|.+++++ .+++++ +.+|+++ +|||| |+++|........ +.+.
T Consensus 75 ~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLv--LLDEp~~gT~~lD~~~~~~~il~~l~ 139 (222)
T cd03285 75 CILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLI--IIDELGRGTSTYDGFGLAWAIAEYIA 139 (222)
T ss_pred eeEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEE--EEecCcCCCChHHHHHHHHHHHHHHH
Confidence 1111122211 134578888887 577777 8899999 99999 8889987654333 4443
No 420
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=3.5e-12 Score=94.02 Aligned_cols=128 Identities=25% Similarity=0.358 Sum_probs=101.4
Q ss_pred ECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCcceeeccc
Q 029613 36 TGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLI 110 (190)
Q Consensus 36 ~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (190)
+|.+||||||+...|+..+ + .-+++|++++.. +...+.+..+++..|+.++..........+-..++.+.
T Consensus 1 MGVsG~GKStvg~~lA~~l---g--~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERL---G--AKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHc---C--CceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence 4899999999999999876 2 348999998652 44557788999999999887766554444445567777
Q ss_pred CccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCce
Q 029613 111 SPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRT 177 (190)
Q Consensus 111 S~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ 177 (190)
+.....|++.|.-..+-.|+ +|+-++..+-.|. ..|+||++....++++ |+..+.|+-
T Consensus 76 ALKr~YRD~LR~~~~~~~Fv--~L~g~~~~i~~Rm------~~R~gHFM~~~ll~SQ-fa~LE~P~~ 133 (161)
T COG3265 76 ALKRSYRDLLREANPGLRFV--YLDGDFDLILERM------KARKGHFMPASLLDSQ-FATLEEPGA 133 (161)
T ss_pred HHHHHHHHHHhccCCCeEEE--EecCCHHHHHHHH------HhcccCCCCHHHHHHH-HHHhcCCCC
Confidence 78888899999888775555 9999998876555 5678999999999999 998888874
No 421
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.28 E-value=2e-11 Score=110.29 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=42.4
Q ss_pred ecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 107 ASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 107 ~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
...||||+.|| .+|..|.... -++ +|||||.+|-..|.+++.+.+.+.
T Consensus 820 atTLSGGEaQRvKLA~EL~k~~tg~TlY--iLDEPTTGLH~~Di~kLl~VL~rL 871 (935)
T COG0178 820 ATTLSGGEAQRVKLAKELSKRSTGKTLY--ILDEPTTGLHFDDIKKLLEVLHRL 871 (935)
T ss_pred cccccchHHHHHHHHHHHhhccCCCeEE--EeCCCCCCCCHHHHHHHHHHHHHH
Confidence 56799999999 5999999988 788 999999999999999888777653
No 422
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.25 E-value=5.8e-11 Score=91.29 Aligned_cols=110 Identities=23% Similarity=0.296 Sum_probs=66.6
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGL 103 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (190)
+|++++|+|+|||||||++++|++++ .+ ++++|+++... ....+++..+++..+...+......+...+-
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l-~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF-SA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE 76 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc-CC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999977 33 47888876431 1223444444433444444443322211111
Q ss_pred ceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 104 ICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 104 ~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~ 145 (190)
...+.+.......|++++..... +..|++|.|...+-.|.
T Consensus 77 ~g~iv~s~~~~~~R~~~r~~~~~--~~~v~l~a~~~~l~~Rl 116 (176)
T PRK09825 77 TGFIVCSSLKKQYRDILRKSSPN--VHFLWLDGDYETILARM 116 (176)
T ss_pred CEEEEEEecCHHHHHHHHhhCCC--EEEEEEeCCHHHHHHHH
Confidence 11122333344566777766543 55559999998875554
No 423
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=5.3e-11 Score=97.35 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=41.6
Q ss_pred ecccCccHHHH-HHHHHh---------CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 107 ASLISPYRKDR-DACRAM---------LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 107 ~~~lS~g~kqr-~iaral---------l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
...+|.|++|+ .+|+++ ..+|+++ +||||+++||+..++.+++.+++-
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~il--llDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVL--LLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEE--EEcCcchhcCHHHHHHHHHHhhcC
Confidence 45589999999 588876 4789999 999999999999999999998763
No 424
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=3.6e-11 Score=98.60 Aligned_cols=46 Identities=7% Similarity=-0.134 Sum_probs=39.6
Q ss_pred ccCccHHHH-HHHHHhCC----CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 109 LISPYRKDR-DACRAMLP----DSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 109 ~lS~g~kqr-~iarall~----~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+|++|| .+|++++. +|+++ ++|||+++||+.....+.+.+++-
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vl--llDEp~~~Ld~~~~~~l~~~l~~~ 220 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTL--IFDEIDTGISGEVAQAVGKKLKEL 220 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence 489999999 58876443 99999 999999999999999999888764
No 425
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.24 E-value=7.8e-12 Score=88.23 Aligned_cols=47 Identities=32% Similarity=0.215 Sum_probs=42.4
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
..++++++|++++|++++|+||||||||||++++. .|.+.++|+++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~ 48 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNV 48 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHH
Confidence 56899999999999999999999999999999975 567899998774
No 426
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.21 E-value=7.7e-12 Score=117.75 Aligned_cols=147 Identities=19% Similarity=0.236 Sum_probs=104.9
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--hCCCcEEEEcCccccccc-ccccCCChhh----------
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--SRGKLSYILDGDNLRHGL-NKNLGFSAED---------- 83 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~~~~g~i~~~g~~~~~~~-~~~i~~~~~~---------- 83 (190)
..++++++.-+++|+++.+.||+|||||||+++++|.+. ..+.|.|.++|.+..+-. +..+.|..+.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 468999999999999999999999999999999999874 234567889987653211 1111222211
Q ss_pred --------------------HHHHHHHHHHHHHHHHHcCcc---------eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 84 --------------------RTENIRRVGEVAKLFADAGLI---------CIASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 84 --------------------~~~~~~~~~~~~~~~~~~~~~---------~~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
+.+..+. ....++...|+. +...-.|||||+| .++-.++..+.++ +
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~--~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~--~ 283 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAA--MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL--F 283 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHH--HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCccee--e
Confidence 1221211 111233344443 2356699999999 5999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcC-CCCCccccccc
Q 029613 134 MNMPLELCEARDPKGLYKLARAG-KIKGLLSIFSF 167 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~-~~~~~~~~~~~ 167 (190)
+||++.+||....-++.+.++.. |+.+.+-+-+.
T Consensus 284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi 318 (1391)
T KOG0065|consen 284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSI 318 (1391)
T ss_pred eecccccccHHHHHHHHHHHHHHHhhhcceEEEEe
Confidence 99999999999999999888763 66665555444
No 427
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.20 E-value=8.6e-11 Score=114.89 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=47.4
Q ss_pred HHHHHHcCccee-----ecccCccHHHH-HHHHHhCCC---CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 95 AKLFADAGLICI-----ASLISPYRKDR-DACRAMLPD---SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 95 ~~~~~~~~~~~~-----~~~lS~g~kqr-~iarall~~---~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
...+.+.|+--+ ...||||+.|| .+|..|... +.++ +|||||.+|++.+.+.+.+.+++.
T Consensus 1680 L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~ly--ilDEPt~GLh~~d~~~Ll~~l~~L 1748 (1809)
T PRK00635 1680 LQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLF--LLDEIATSLDNQQKSALLVQLRTL 1748 (1809)
T ss_pred HHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEE--EEcCCCCCCCHHHHHHHHHHHHHH
Confidence 344555555322 56699999999 599999865 5788 999999999999999999887664
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=3e-11 Score=95.63 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=63.2
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAK 96 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 96 (190)
..+-.++++.-..+.+++|+||||+||||++|.+.....-...|.+.... .... ++..+... .+.
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-~~~~------~~~d~i~~----~l~---- 80 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-SATI------GLVDKIFT----RMS---- 80 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-CcEE------eeeeeeee----eeC----
Confidence 34556667654444899999999999999999998432112344333321 1111 11111000 000
Q ss_pred HHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613 97 LFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGL 149 (190)
Q Consensus 97 ~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~ 149 (190)
....+....+.+...+++..++++++.++.++ +||||++++|+.+...+
T Consensus 81 --~~~si~~~~S~f~~el~~l~~~l~~~~~~slv--llDE~~~gtd~~~~~~~ 129 (213)
T cd03281 81 --SRESVSSGQSAFMIDLYQVSKALRLATRRSLV--LIDEFGKGTDTEDGAGL 129 (213)
T ss_pred --CccChhhccchHHHHHHHHHHHHHhCCCCcEE--EeccccCCCCHHHHHHH
Confidence 00000000111222233336888889999999 99999999998764443
No 429
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.15 E-value=3.8e-10 Score=90.34 Aligned_cols=126 Identities=14% Similarity=0.159 Sum_probs=70.2
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHH-HHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhH
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTL-AFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDR 84 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTL-lr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~ 84 (190)
.++++++.+++ .+++|+++.|+|+|||||||+ ++++++.+ ..+...+++..+.- +++.
T Consensus 9 ~~~~ld~~l~g---------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e~~-----------~~~~ 67 (230)
T PRK08533 9 SRDELHKRLGG---------GIPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQLT-----------TTEF 67 (230)
T ss_pred EEeeeehhhCC---------CCCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCCC-----------HHHH
Confidence 45555555543 378999999999999999999 58888866 55666666654322 1222
Q ss_pred HHHHHHHH-HHHHHHHHcCcc---eeecccCccHHHHH-H---HHH-hCCCCCeEEEEeeCCchhh----hhcChHHHHH
Q 029613 85 TENIRRVG-EVAKLFADAGLI---CIASLISPYRKDRD-A---CRA-MLPDSNFIEVFMNMPLELC----EARDPKGLYK 151 (190)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~~~---~~~~~lS~g~kqr~-i---ara-ll~~~~il~vllDEP~~~l----d~~~~~~~~~ 151 (190)
.++...+. .+.... ..+.. .....+++...++. + ..+ -..+|+++ ++|||++.+ |+...+.+.+
T Consensus 68 ~~~~~~~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~l--VIDe~t~~l~~~~d~~~~~~l~~ 144 (230)
T PRK08533 68 IKQMMSLGYDINKKL-ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVI--IIDSLSSLISNDASEVAVNDLMA 144 (230)
T ss_pred HHHHHHhCCchHHHh-hcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEE--EEECccHHhcCCcchHHHHHHHH
Confidence 22221111 111111 11111 11122444443332 2 111 12357888 999999998 5555566666
Q ss_pred HHHc
Q 029613 152 LARA 155 (190)
Q Consensus 152 ~~~~ 155 (190)
.++.
T Consensus 145 ~l~~ 148 (230)
T PRK08533 145 FFKR 148 (230)
T ss_pred HHHH
Confidence 6653
No 430
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.14 E-value=7.8e-10 Score=83.96 Aligned_cols=127 Identities=24% Similarity=0.285 Sum_probs=71.1
Q ss_pred ECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--cc-ccccCC--ChhhHHHHHHHHHHHHHHHHHc-Ccceeecc
Q 029613 36 TGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GL-NKNLGF--SAEDRTENIRRVGEVAKLFADA-GLICIASL 109 (190)
Q Consensus 36 ~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~-~~~i~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 109 (190)
+|+|||||||++++|++.+ |.++++++.+.. .. ....++ ...++..+...+.......... +...++ .
T Consensus 1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~ 74 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C 74 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence 5999999999999999976 346888876421 11 111233 3333444555544444332222 222233 3
Q ss_pred cCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccc--cCCCCCCc
Q 029613 110 ISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFC--YYEKLIPR 176 (190)
Q Consensus 110 lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~p~ 176 (190)
.......|+.++. ..+++..|+++.|.+.|..|. ..|.++++...-+..+. ||+|+..+
T Consensus 75 s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl------~~R~~~~a~~~vl~~Q~~~~ep~~~~e 135 (163)
T PRK11545 75 SALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRL------KARKGHFFKTQMLVTQFETLQEPGADE 135 (163)
T ss_pred ecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHH------HhccCCCCCHHHHHHHHHHcCCCCCCC
Confidence 3334455667776 445677779999999987663 22334444433333332 66665433
No 431
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.13 E-value=2.3e-10 Score=93.54 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=35.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
.-++|+||||||||||+++|+|.+ .+++|.+.++|.++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~-~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL-STGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc-CCCCceEEECCEEee
Confidence 578999999999999999999988 789999999998875
No 432
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.10 E-value=3.4e-11 Score=93.21 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=54.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCc----ceee
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGL----ICIA 107 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 107 (190)
++.|+||||+||||++|.+.-...-...|..... .... +++..+ ++...+. ..-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a-~~~~------~~~~d~--------------il~~~~~~d~~~~~~ 59 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA-ESAE------LPVFDR--------------IFTRIGASDSLAQGL 59 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee-hheE------ecccce--------------EEEEeCCCCchhccc
Confidence 3679999999999999999843322233322211 1110 011110 0001111 1112
Q ss_pred cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHH
Q 029613 108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYK 151 (190)
Q Consensus 108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~ 151 (190)
+.+|.+++|...+...+.+|+++ ++|||++++|+.+...+..
T Consensus 60 s~fs~~~~~l~~~l~~~~~~~ll--llDEp~~g~d~~~~~~~~~ 101 (185)
T smart00534 60 STFMVEMKETANILKNATENSLV--LLDELGRGTSTYDGVAIAA 101 (185)
T ss_pred cHHHHHHHHHHHHHHhCCCCeEE--EEecCCCCCCHHHHHHHHH
Confidence 34566666653333334589999 9999999999987766543
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.09 E-value=5.1e-11 Score=109.79 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=69.1
Q ss_pred cccccCCc-cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHc
Q 029613 23 QKLLNQKG-CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADA 101 (190)
Q Consensus 23 ~sl~i~~G-eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 101 (190)
+++.+..+ .+++|+||||+||||++|.|++...-+..|...--+.... +++..+-. ..+.. ..
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~------~~~~d~i~----~~i~~------~~ 377 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSE------IPYFEEIF----ADIGD------EQ 377 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcccc------ccchhhee----eecCh------Hh
Confidence 67888777 8999999999999999999999832223331111111100 01100000 00000 00
Q ss_pred CcceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHH-HHHHc
Q 029613 102 GLICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLY-KLARA 155 (190)
Q Consensus 102 ~~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~-~~~~~ 155 (190)
.+....+.+|++++++. +++++ .++.++ +||||++++|+.+...+. +.++.
T Consensus 378 si~~~LStfS~~m~~~~~il~~~-~~~sLv--LlDE~g~GtD~~eg~ala~aiLe~ 430 (771)
T TIGR01069 378 SIEQNLSTFSGHMKNISAILSKT-TENSLV--LFDELGAGTDPDEGSALAISILEY 430 (771)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhc-CCCcEE--EecCCCCCCCHHHHHHHHHHHHHH
Confidence 11122445788888884 66655 678999 999999999999887773 44443
No 434
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.08 E-value=5.5e-11 Score=103.06 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=43.8
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc-EEEEcCcccc
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL-SYILDGDNLR 70 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g-~i~~~g~~~~ 70 (190)
..+|+++|+++++||+++|+||||||||||++ .++. .+.+| .|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 35799999999999999999999999999999 5655 45555 7999998774
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.06 E-value=5.4e-10 Score=95.22 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=78.0
Q ss_pred eccCc-cccccccccccCCc-----cEEEEECCCCCcHHHHHHHHHHHHhhCCCc-EEEEcCccccc-ccccccCCCh-h
Q 029613 12 WQESP-IGRLERQKLLNQKG-----CVVWITGLSGSGKSTLAFSVNKELYSRGKL-SYILDGDNLRH-GLNKNLGFSA-E 82 (190)
Q Consensus 12 ~~~~~-~~~l~~~sl~i~~G-----eii~L~G~nGsGKSTLlr~l~g~l~~~~~g-~i~~~g~~~~~-~~~~~i~~~~-~ 82 (190)
+.|.+ +.-+.++.|.+..| |++..+|.||.||||++++++|.+ +++.| ++-.-.-.+.. ..+....-.. +
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~-~pd~~~e~p~lnVSykpqkispK~~~tvR~ 421 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRL-KPDEGGEIPVLNVSYKPQKISPKREGTVRQ 421 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCC-CCCccCcccccceeccccccCccccchHHH
Confidence 34543 34567888888877 577899999999999999999987 45443 22211111100 0000000000 0
Q ss_pred hHHHHHH-------HHHHHHHHHHHcCc-ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHH
Q 029613 83 DRTENIR-------RVGEVAKLFADAGL-ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKG 148 (190)
Q Consensus 83 ~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~ 148 (190)
-..+.++ .+.++..-+....+ ..-+..+|||+.|| ++|..+=..++++ +.|||.+-||+..+..
T Consensus 422 ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvY--liDEpsAylDSeQRi~ 494 (592)
T KOG0063|consen 422 LLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVY--LIDEPSAYLDSEQRII 494 (592)
T ss_pred HHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceE--EecCchhhcChHHHHH
Confidence 0111111 00111111111111 12367799999999 6999888888999 9999999999886644
No 436
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.05 E-value=1.3e-09 Score=86.34 Aligned_cols=37 Identities=24% Similarity=0.108 Sum_probs=33.1
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+.+++++...+ ++++|+|||||||||++|.+++..
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 3578999999887 999999999999999999998754
No 437
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.02 E-value=1.6e-09 Score=85.38 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=36.9
Q ss_pred HHHH-HHHHHhCCCCCeEEEEeeCCc-----hhhhhcChHHHHHHHHcC
Q 029613 114 RKDR-DACRAMLPDSNFIEVFMNMPL-----ELCEARDPKGLYKLARAG 156 (190)
Q Consensus 114 ~kqr-~iarall~~~~il~vllDEP~-----~~ld~~~~~~~~~~~~~~ 156 (190)
++++ .+|++++.+|+++ ++|||| ++||+..++.+.+.+++-
T Consensus 157 ~~~f~~ia~~l~~~p~~~--~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLV--FVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhhcccce--ecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 5556 5999999999999 999999 999999999999988874
No 438
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.99 E-value=8.8e-09 Score=78.82 Aligned_cols=143 Identities=18% Similarity=0.143 Sum_probs=78.7
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccc-------ccCCC------hhhHHHH-HHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNK-------NLGFS------AEDRTEN-IRRVGEV 94 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~-------~i~~~------~~~~~~~-~~~~~~~ 94 (190)
+|.++.|.|++||||||+++.|...+.. ..+.++.+++...+.. .+.+. ++..... .......
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAE---PWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCC---CccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence 5789999999999999999999886521 1233444433221110 11111 1111111 1112222
Q ss_pred HHHHHHcCcceeecccCc-cHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccc-cccccCCC
Q 029613 95 AKLFADAGLICIASLISP-YRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI-FSFCYYEK 172 (190)
Q Consensus 95 ~~~~~~~~~~~~~~~lS~-g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p 172 (190)
...+...|...++..... ....|..++.+.. .++..|+++.|...|..|..+ |..+..++... ... ++.|
T Consensus 78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~-~~~~~v~l~~~~~~l~~R~~~------R~~~~~~~~~~~~~~-~~~~ 149 (175)
T cd00227 78 VAAMARAGANVIADDVFLGRAALQDCWRSFVG-LDVLWVGVRCPGEVAEGRETA------RGDRVPGQARKQARV-VHAG 149 (175)
T ss_pred HHHHHhCCCcEEEeeeccCCHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHh------cCCccchHHHHHHHH-hcCC
Confidence 333445676666554333 4444555666554 567777999999888766643 22233333332 223 5567
Q ss_pred CCCceEEecC
Q 029613 173 LIPRTCKKKI 182 (190)
Q Consensus 173 ~~p~~~~~~~ 182 (190)
..+++++|--
T Consensus 150 ~~~dl~iDts 159 (175)
T cd00227 150 VEYDLEVDTT 159 (175)
T ss_pred CcceEEEECC
Confidence 7788988863
No 439
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.99 E-value=1.5e-09 Score=86.42 Aligned_cols=48 Identities=21% Similarity=0.045 Sum_probs=40.2
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL 64 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~ 64 (190)
..+.+++++.+.+|+++.|+||||+||||+++++++....+..|.+..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 467899999999999999999999999999999999443455565443
No 440
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.94 E-value=7.6e-09 Score=78.04 Aligned_cols=106 Identities=21% Similarity=0.331 Sum_probs=59.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613 33 VWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA 107 (190)
Q Consensus 33 i~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (190)
+.|+||+||||||+++.|++.+ +.++++++++... .....++..++...+...+.+........+...++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi 75 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII 75 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4689999999999999999865 2467888876421 11122334444444444444333322222322232
Q ss_pred cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~ 145 (190)
.........|..++. ..+++..++||-|...+-.|.
T Consensus 76 ~~t~~~~~~r~~~~~--~~~~~~~i~l~~~~e~~~~R~ 111 (163)
T TIGR01313 76 TCSALKRHYRDILRE--AEPNLHFIYLSGDKDVILERM 111 (163)
T ss_pred EecccHHHHHHHHHh--cCCCEEEEEEeCCHHHHHHHH
Confidence 222222334555552 345555559999988875554
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=3e-09 Score=91.89 Aligned_cols=122 Identities=20% Similarity=0.119 Sum_probs=76.7
Q ss_pred ccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhH
Q 029613 6 NSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDR 84 (190)
Q Consensus 6 ~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~ 84 (190)
+.+.++..+. +..+++.+ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+.+.|+.-.+ .
T Consensus 132 ~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~gvI~~iGerg~e------------v 197 (432)
T PRK06793 132 EREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGERGRE------------V 197 (432)
T ss_pred heechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC-CCCeEEEEeCCCCccc------------H
Confidence 4455555554 46778885 999999999999999999999999999976 6677777665543321 1
Q ss_pred HHHHHHHHHHHHHHHHcCcceeecccCccHHHHH--HHHHhC------CCCCeEEEEeeCCchhhhhc
Q 029613 85 TENIRRVGEVAKLFADAGLICIASLISPYRKDRD--ACRAML------PDSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~--iarall------~~~~il~vllDEP~~~ld~~ 144 (190)
.+.+.....-.. +...-+....+..|+++++|. .|.+++ .++-++ ++|+||..++..
T Consensus 198 ~e~~~~~l~~~g-l~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLl--ilDslTr~a~A~ 262 (432)
T PRK06793 198 KDFIRKELGEEG-MRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLL--MMDSVTRFADAR 262 (432)
T ss_pred HHHHHHHhhhcc-cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEE--EecchHHHHHHH
Confidence 121111000000 111111222455788999983 333331 444555 999999998764
No 442
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.92 E-value=1.1e-08 Score=76.11 Aligned_cols=109 Identities=25% Similarity=0.318 Sum_probs=60.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHH-HHHHHcCcce
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVA-KLFADAGLIC 105 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 105 (190)
+++|.|++||||||+++.|...+ +..+++++.+... ......+...+...+...+.... ..+...+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 75 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV 75 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence 47899999999999999998853 2357787776542 11122233333334444433222 1111123222
Q ss_pred eecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 106 IASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 106 ~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~ 145 (190)
+.......+.+|..+++++....+..++++.|...+..|.
T Consensus 76 Vid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~ 115 (150)
T cd02021 76 VVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERL 115 (150)
T ss_pred EEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHH
Confidence 3322223344555566665555666669999988775554
No 443
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.84 E-value=5.2e-09 Score=82.70 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=34.1
Q ss_pred ccCccHHHH-H----HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 109 LISPYRKDR-D----ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 109 ~lS~g~kqr-~----iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
.+|+||+.. + +|..-....+++ +|||+.++||...++.+.+++++
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~--ilDEvd~~LD~~~~~~l~~~l~~ 185 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFL--ILDEVDAALDEQNRKRLADLLKE 185 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEE--EEESTTTTS-HHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 799999887 2 334445566899 99999999999999999999986
No 444
>PRK00064 recF recombination protein F; Reviewed
Probab=98.84 E-value=1.9e-08 Score=85.61 Aligned_cols=46 Identities=4% Similarity=-0.003 Sum_probs=39.8
Q ss_pred cccCccHHHH-HHHHHhC---------CCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 108 SLISPYRKDR-DACRAML---------PDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 108 ~~lS~g~kqr-~iarall---------~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
..+|.||+++ .+|+.++ .+|+++ +||||+++||+..++.+++.+.+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~il--LlDd~~s~LD~~~~~~l~~~l~~ 327 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPIL--LLDDVASELDDGRRAALLERLKG 327 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEE--EEccchhhhCHHHHHHHHHHHhc
Confidence 4589999888 5877774 789999 99999999999999999988875
No 445
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.78 E-value=7.9e-08 Score=77.81 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=66.9
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEE---EcC--ccccc---cc-----ccccCCChhhHHHHHHH
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-GKLSYI---LDG--DNLRH---GL-----NKNLGFSAEDRTENIRR 90 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~---~~g--~~~~~---~~-----~~~i~~~~~~~~~~~~~ 90 (190)
+.+.+|+.++|+|++|+|||||++.|++.+... ....++ +.. .++.. .+ ....+-.+.........
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~ 90 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM 90 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence 467899999999999999999999999877322 122222 222 11111 11 11111122221111111
Q ss_pred HHHHHHHHHHcCcc--------------------eeecccCccH--------HHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613 91 VGEVAKLFADAGLI--------------------CIASLISPYR--------KDR-DACRAMLPDSNFIEVFMNMPLELC 141 (190)
Q Consensus 91 ~~~~~~~~~~~~~~--------------------~~~~~lS~g~--------kqr-~iarall~~~~il~vllDEP~~~l 141 (190)
....+..+...|.. .....+|+|+ +|+ ++||++..++++. +| ||+.+
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt--~l--~T~~~ 166 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT--II--ATALV 166 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE--Ee--eehee
Confidence 22222222222211 1134468899 899 7999998999998 77 99999
Q ss_pred hhcC
Q 029613 142 EARD 145 (190)
Q Consensus 142 d~~~ 145 (190)
|..+
T Consensus 167 d~~~ 170 (249)
T cd01128 167 DTGS 170 (249)
T ss_pred cCCC
Confidence 8543
No 446
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.78 E-value=6.9e-09 Score=88.55 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=76.9
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-----------EcCcccccc----cccc--cCCChhhHHHH--
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-----------LDGDNLRHG----LNKN--LGFSAEDRTEN-- 87 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-----------~~g~~~~~~----~~~~--i~~~~~~~~~~-- 87 (190)
-++|++.+++|-||-||||-+++++|.+ +|.-|... +.|..+... +..+ ....++.....
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~-kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQ-KPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCC-CCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 3789999999999999999999999988 55544211 111111000 0000 00111111100
Q ss_pred ---------HHH------HHHHHHHHHHcCc-ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613 88 ---------IRR------VGEVAKLFADAGL-ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLY 150 (190)
Q Consensus 88 ---------~~~------~~~~~~~~~~~~~-~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~ 150 (190)
+.+ ..++...++...+ ..-+..+|||+-|| ++|.+.+..+++. ++|||.+-||.+.+...-
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advy--MFDEpSsYLDVKQRLkaA 253 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVY--MFDEPSSYLDVKQRLKAA 253 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhccee--EecCCcccchHHHhhhHH
Confidence 000 0111111111111 12367799999999 7999999999999 999999999988776666
Q ss_pred HHHHc
Q 029613 151 KLARA 155 (190)
Q Consensus 151 ~~~~~ 155 (190)
..+++
T Consensus 254 ~~IRs 258 (592)
T KOG0063|consen 254 ITIRS 258 (592)
T ss_pred HHHHH
Confidence 66665
No 447
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.78 E-value=2.4e-09 Score=85.01 Aligned_cols=39 Identities=23% Similarity=0.095 Sum_probs=35.9
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
...+.++++|..++|+++.|+||||+||||+++.++...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 456789999999999999999999999999999999875
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.77 E-value=6.7e-09 Score=80.36 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=40.2
Q ss_pred cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
..+=+.+.+++|+.++|+|||||||||++++|++.+ ++..+.+.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i-~~~~~~i~ied 60 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI-PPDERIITIED 60 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEECC
Confidence 445567788999999999999999999999999988 57778887754
No 449
>PRK13695 putative NTPase; Provisional
Probab=98.75 E-value=5.1e-09 Score=80.04 Aligned_cols=119 Identities=20% Similarity=0.248 Sum_probs=62.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHH-H-HHcCcceeecc
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKL-F-ADAGLICIASL 109 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 109 (190)
.++|+|+||||||||++.|.+.+...+.-..-+-.+++.. .....++...+... .....+... + ...........
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~-~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~ 78 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVRE-GGKRIGFKIIDLDT--GEEGILARVGFPSRPRVGKYVVN 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHh-cCCccceEEEEcCC--CCeEEccccCCCCCCceeeEEEe
Confidence 4789999999999999999987743222111011111110 00011111110000 000000000 0 01111223445
Q ss_pred cCccHHHH-HHHHHhCCCCCeEEEEeeC--CchhhhhcChHHHHHHHHc
Q 029613 110 ISPYRKDR-DACRAMLPDSNFIEVFMNM--PLELCEARDPKGLYKLARA 155 (190)
Q Consensus 110 lS~g~kqr-~iarall~~~~il~vllDE--P~~~ld~~~~~~~~~~~~~ 155 (190)
+|++++-. .+++..+.+|+++ ++|| |+..++....+.+.+.++.
T Consensus 79 lsgle~~~~~l~~~~l~~~~~l--llDE~~~~e~~~~~~~~~l~~~~~~ 125 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVI--IIDEIGKMELKSPKFVKAVEEVLDS 125 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEE--EEECCCcchhhhHHHHHHHHHHHhC
Confidence 77887777 5777788899998 9999 7777776666666666644
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=8.7e-08 Score=73.84 Aligned_cols=137 Identities=19% Similarity=0.164 Sum_probs=72.9
Q ss_pred ccccccccc--cccCCccEEEEECCCCCcHHHHHHHHHHHHh--hCCCcE-EEEcCcccccccccc----------cCCC
Q 029613 16 PIGRLERQK--LLNQKGCVVWITGLSGSGKSTLAFSVNKELY--SRGKLS-YILDGDNLRHGLNKN----------LGFS 80 (190)
Q Consensus 16 ~~~~l~~~s--l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~~~~g~-i~~~g~~~~~~~~~~----------i~~~ 80 (190)
+.++++.+- +++++ -|+.|+|.||+|||||+-+|+-..- ..|.+. .....+.....+... .++-
T Consensus 22 slPa~r~l~~~LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~F 100 (233)
T COG3910 22 SLPAFRHLEERLEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFF 100 (233)
T ss_pred cchHHHhhhhhccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceE
Confidence 456666554 44443 6999999999999999999976542 223221 111111110000000 0000
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCcce-e----ecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 81 AEDRTENIRRVGEVAKLFADAGLIC-I----ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
-+.+.. ..++..+++..-.. + ...-|-|+--..+...-.+...++ +||||-++|.+.-+-.+.++++.
T Consensus 101 --lRAEs~---yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiY--iLDEPEa~LSp~RQlella~l~~ 173 (233)
T COG3910 101 --LRAESF---YNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIY--ILDEPEAALSPSRQLELLAILRD 173 (233)
T ss_pred --EehhHH---HHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceE--EecCccccCCHHHHHHHHHHHHH
Confidence 011111 11222222211111 1 233567776665444445566899 99999999999888777777776
Q ss_pred CCCCC
Q 029613 156 GKIKG 160 (190)
Q Consensus 156 ~~~~~ 160 (190)
..-+|
T Consensus 174 la~sG 178 (233)
T COG3910 174 LADSG 178 (233)
T ss_pred HHhcC
Confidence 54444
No 451
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.71 E-value=1e-07 Score=73.03 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=60.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcce----ee
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLIC----IA 107 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 107 (190)
++.|.|++|+||||++-.++-.....+...+++.-+.- .++..++...++--...+...+... .+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~-----------~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~ 69 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-----------PEELIENAESLGWDLERLEDEGLLAIVDADP 69 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC-----------HHHHHHHHHHcCCChHHHHhcCCeEEEecCc
Confidence 36789999999999987664433244555556543221 1222222211111111122223222 14
Q ss_pred cccCccHHH------HHHHH-HhCCCCCeEEEEeeCCchhhh---hcChHHHHHHHHc
Q 029613 108 SLISPYRKD------RDACR-AMLPDSNFIEVFMNMPLELCE---ARDPKGLYKLARA 155 (190)
Q Consensus 108 ~~lS~g~kq------r~iar-all~~~~il~vllDEP~~~ld---~~~~~~~~~~~~~ 155 (190)
..+|+++.| ..+.+ ....+|+++ ++|||++.++ ......+...++.
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~l--viD~~~~~~~~~~~~~~~~i~~l~~~ 125 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRV--VIDSVSGLLLMEQSTARLEIRRLLFA 125 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEE--EEeCcHHHhhcChHHHHHHHHHHHHH
Confidence 456888777 33333 344678999 9999999998 4444444444443
No 452
>PRK06762 hypothetical protein; Provisional
Probab=98.70 E-value=9e-08 Score=72.36 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=57.1
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeecc
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASL 109 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (190)
+.+++|.|++||||||+++.|+..+ . .+.++++.+.+...+........... ...+.+........+...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l-~--~~~~~i~~D~~r~~l~~~~~~~~~~~---~~~~~~~~~~~~~~g~~vild~ 75 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL-G--RGTLLVSQDVVRRDMLRVKDGPGNLS---IDLIEQLVRYGLGHCEFVILEG 75 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEecHHHHHHHhccccCCCCCcC---HHHHHHHHHHHHhCCCEEEEch
Confidence 3689999999999999999999866 2 35667787766543211110000001 1111222222222343333322
Q ss_pred cCccHHHHHHHHHhCC--CCCeEEEEeeCCchhhhhcC
Q 029613 110 ISPYRKDRDACRAMLP--DSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 110 lS~g~kqr~iarall~--~~~il~vllDEP~~~ld~~~ 145 (190)
.......+.+.+.+.. ..++..++||.|...+-.|.
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~ 113 (166)
T PRK06762 76 ILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRH 113 (166)
T ss_pred hhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHH
Confidence 2112222333333332 22455569999988876554
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.70 E-value=9.2e-08 Score=74.78 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=55.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeecccC
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLIS 111 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS 111 (190)
++.|+||+||||||+++.|.+.+.....+.+..-++++.. ..+... ..+.+ ...+. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~--------~~~~~~---~~i~q-----~~vg~-------~ 59 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF--------VHESKR---SLINQ-----REVGL-------D 59 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc--------cccCcc---ceeee-----cccCC-------C
Confidence 6789999999999999999988744445555554444321 000000 00000 00000 0
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 112 PYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 112 ~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
...-...+.+++..+|+++ ++||+.+ ......+.+.+..|+
T Consensus 60 ~~~~~~~i~~aLr~~pd~i--i~gEird---~e~~~~~l~~a~~G~ 100 (198)
T cd01131 60 TLSFENALKAALRQDPDVI--LVGEMRD---LETIRLALTAAETGH 100 (198)
T ss_pred ccCHHHHHHHHhcCCcCEE--EEcCCCC---HHHHHHHHHHHHcCC
Confidence 1112235888888999999 9999963 223334444555444
No 454
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.69 E-value=3.5e-09 Score=97.92 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=62.3
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcE-EEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHH
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLS-YILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFA 99 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~-i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
.++++. ..+.++.|+|||++||||++|.+.....-...|- |..... . .+++... ++.
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~-~------~i~~~~~--------------i~~ 376 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEP-S------EIPVFKE--------------IFA 376 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCC-c------cccccce--------------EEE
Confidence 344443 3457889999999999999999965421112221 111100 0 0000000 000
Q ss_pred HcC----cceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHH
Q 029613 100 DAG----LICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYK 151 (190)
Q Consensus 100 ~~~----~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~~ 151 (190)
..+ +....+.+|++++++. +++++ .+|.++ +||||++++|+.+...+..
T Consensus 377 ~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLv--LlDE~~~GtDp~eg~ala~ 430 (782)
T PRK00409 377 DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLV--LFDELGAGTDPDEGAALAI 430 (782)
T ss_pred ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEE--EecCCCCCCCHHHHHHHHH
Confidence 111 1112345788898884 77776 778898 9999999999988776643
No 455
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.65 E-value=7e-08 Score=80.46 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=35.8
Q ss_pred cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
+++.++.|+.+.|+|++||||||++++|++.+ ++..+.+.++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEc
Confidence 45778899999999999999999999999987 5666766664
No 456
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.63 E-value=2.1e-07 Score=71.92 Aligned_cols=36 Identities=25% Similarity=0.549 Sum_probs=28.3
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
|++++|+||||||||||+++|++.+ .+ .+.+.+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~-~~---~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE-QT---QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC-CC---eEEEcCEEC
Confidence 7899999999999999999999865 22 355555444
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.62 E-value=7.2e-08 Score=75.05 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+++|+|+||||||||+++|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 458
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.61 E-value=5.4e-07 Score=75.45 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=32.9
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
-.+|++++++|||||||||++..|++.+. +..+.|.+-+.+.
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~ 152 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDT 152 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCc
Confidence 35789999999999999999999999884 4445565544443
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.61 E-value=1.5e-07 Score=67.24 Aligned_cols=96 Identities=22% Similarity=0.231 Sum_probs=54.9
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeec
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIAS 108 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (190)
++..+.|+||+|+||||+++.|+..+.....+.++++........ .... . .... .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~------~~~~-----~~~~~ 59 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEV-------LDQL---L------LIIV-----GGKKA 59 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccC-------HHHH---H------hhhh-----hccCC
Confidence 367899999999999999999999774333245666655433210 0000 0 0000 00011
Q ss_pred ccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613 109 LISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK 147 (190)
Q Consensus 109 ~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~ 147 (190)
...+.+..+ .+.++-...+.++ ++||+....+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~vi--iiDei~~~~~~~~~~ 97 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVL--ILDEITSLLDAEQEA 97 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEE--EEECCcccCCHHHHH
Confidence 223333344 3555555556888 999998876555443
No 460
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.58 E-value=5e-08 Score=84.62 Aligned_cols=61 Identities=18% Similarity=0.037 Sum_probs=51.3
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
.++.+++++.|. +..+++.++ .+.+|+.++|+|+||||||||+++|+++. .+..|.+.+.|
T Consensus 139 ~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~pd~gvv~liG 200 (450)
T PRK06002 139 AMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-AFDTVVIALVG 200 (450)
T ss_pred CeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCeeeeeecc
Confidence 457778888884 678899886 89999999999999999999999999966 66777777643
No 461
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.57 E-value=6.8e-08 Score=75.89 Aligned_cols=28 Identities=43% Similarity=0.552 Sum_probs=26.2
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
++|++++|+|+||||||||++.|++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6799999999999999999999999873
No 462
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.54 E-value=5.9e-07 Score=75.98 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=59.8
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA 107 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (190)
.++.++.|.||+||||||+++++.+.+..+..+.|..-++++.... ... . ..+.. ....
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~--------~~~----~------~~i~q---~evg 178 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH--------RNK----R------SLINQ---REVG 178 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc--------cCc----c------ceEEc---cccC
Confidence 5688999999999999999999999774444455555444332100 000 0 00000 0000
Q ss_pred cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
.....-...+.+++-.+|+++ ++||+. |+.......+.+..||
T Consensus 179 --~~~~~~~~~l~~~lr~~pd~i--~vgEir---d~~~~~~~l~aa~tGh 221 (343)
T TIGR01420 179 --LDTLSFANALRAALREDPDVI--LIGEMR---DLETVELALTAAETGH 221 (343)
T ss_pred --CCCcCHHHHHHHhhccCCCEE--EEeCCC---CHHHHHHHHHHHHcCC
Confidence 001112345788888999999 999996 3334444455555555
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.54 E-value=1.1e-07 Score=60.54 Aligned_cols=35 Identities=40% Similarity=0.513 Sum_probs=28.3
Q ss_pred cccccccCC-ccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 21 ERQKLLNQK-GCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 21 ~~~sl~i~~-Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
++..+++.+ |.++.|+|+|||||||++.+|.=.+.
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 334566664 56999999999999999999987773
No 464
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.52 E-value=7e-07 Score=66.10 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
++.|.|+||+||||++..+++.....+...++++
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4689999999999999999998744333333443
No 465
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.49 E-value=1.1e-07 Score=84.01 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=54.7
Q ss_pred CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
.|+++.++...+++++++.+..|+.++|+|+||||||||++.|.|++ ++.+|...++...+.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gll-pp~~g~e~le~~~i~ 249 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLL-PDLSNEEALESAAIL 249 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccC-CCCCCcEEEecchhh
Confidence 57888888888999999999999999999999999999999999988 677787777766554
No 466
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.47 E-value=2.3e-06 Score=68.38 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=62.0
Q ss_pred ccccccc-ccccCCccEEEEECCCCCcHHHHHHHHH-HHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHH-H
Q 029613 17 IGRLERQ-KLLNQKGCVVWITGLSGSGKSTLAFSVN-KELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVG-E 93 (190)
Q Consensus 17 ~~~l~~~-sl~i~~Geii~L~G~nGsGKSTLlr~l~-g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~-~ 93 (190)
..-|+.+ .=-+++|.++.|.|++||||||++..++ +.+ ..+...+++.-+.- +++..++...+. .
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~-----------~~~~~~~~~~~g~~ 78 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITTENT-----------SKSYLKQMESVKID 78 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEcCCC-----------HHHHHHHHHHCCCC
Confidence 3444443 2357899999999999999999999884 333 34444455543221 111111111111 0
Q ss_pred HHHHHHHcCccee-------ecccCccHHHH-HHHHHhCC--CCCeEEEEeeCCchhhhhcChH
Q 029613 94 VAKLFADAGLICI-------ASLISPYRKDR-DACRAMLP--DSNFIEVFMNMPLELCEARDPK 147 (190)
Q Consensus 94 ~~~~~~~~~~~~~-------~~~lS~g~kqr-~iarall~--~~~il~vllDEP~~~ld~~~~~ 147 (190)
+...+. .+...+ ....+.+..+. ..+...+. +++++ ++|||++.++..+..
T Consensus 79 ~~~~~~-~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~i--viDs~t~~~~~~~~~ 139 (234)
T PRK06067 79 ISDFFL-WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVI--IIDSLTIFATYAEED 139 (234)
T ss_pred hhHHHh-CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEE--EEecHHHHHhcCCHH
Confidence 011110 111111 11223444555 45556665 77888 999999876654444
No 467
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.45 E-value=7.1e-07 Score=78.92 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=43.7
Q ss_pred ceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 10 IFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 10 l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
+...+|+...++|+.+.. +|.+++|.|||||||||+++.|+..+ |..+++...+.
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g~~Y 319 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTGAMY 319 (512)
T ss_pred EEEEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCCcee
Confidence 344568888899999988 88999999999999999999999876 23455544443
No 468
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.44 E-value=7.5e-06 Score=66.06 Aligned_cols=39 Identities=36% Similarity=0.507 Sum_probs=30.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
++.|+|++||||||+++.|+..+...+...+.++++.+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 478999999999999999998875444455666665554
No 469
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.42 E-value=1.2e-07 Score=81.00 Aligned_cols=141 Identities=21% Similarity=0.255 Sum_probs=73.8
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHH-HHHHHHHHHHHHHcCccee
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN-IRRVGEVAKLFADAGLICI 106 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 106 (190)
..|.++||+|+||||||||+..|.+.+....+.. .+.. ..+ ...+..+....+ +++.+....++...+...+
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~V~-~ik~--~~~----~~~~d~~~~d~~~~~~aga~~~~~~~~~~~~~ 75 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSERFSVG-YYKH--GCH----RFDIDREGKDSDLARKAGASTVMISDPEKHAL 75 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhCceEE-EEEe--CCC----CCCCCcccchHHHHHhccCcEEEEecCCEEEE
Confidence 4689999999999999999999999884322211 2211 111 112222222111 1111111111111122222
Q ss_pred ecccCccHHHHHHHHHhCCCCCeE--EEEeeCCch--hhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEe
Q 029613 107 ASLISPYRKDRDACRAMLPDSNFI--EVFMNMPLE--LCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKK 180 (190)
Q Consensus 107 ~~~lS~g~kqr~iarall~~~~il--~vllDEP~~--~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 180 (190)
....+. .+...+..+.+.+++ |.+-++|.. .|-.++.+.+ ..+..++.+++.++.+. |++|..|+..++
T Consensus 76 ~~~~~~---~~~~~~~~~~~~D~vlvEG~k~~~~pki~~~~~~~~~~-~~~~~~~~~~v~av~~~-~~~~~~~~~~~p 148 (369)
T PRK14490 76 IAGGPP---DPLLERGAFLDCDLLLVEGLKELPLPKILLVDRERKIL-DLLEQGSVTNVVALVVP-DDPASYPDFGLP 148 (369)
T ss_pred EEeCCC---ChHHHHhccCCCCEEEECCCCCCCCCeEEEEeCCCCcc-cccccCCCCCEEEEEEC-CcccccccCCCc
Confidence 222222 234455555566754 446688776 5554554433 45556678888999888 877755555444
No 470
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.42 E-value=1.6e-07 Score=81.42 Aligned_cols=61 Identities=21% Similarity=0.115 Sum_probs=50.3
Q ss_pred cccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 5 GNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 5 l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
++.+.++..+ .+..+++++ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+.+.|.
T Consensus 130 ~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~-~~d~~vi~~iGe 191 (433)
T PRK07594 130 MVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAP-DADSNVLVLIGE 191 (433)
T ss_pred eeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCC-CCCEEEEEEECC
Confidence 4556666666 468899999 999999999999999999999999999966 566676666554
No 471
>PLN02796 D-glycerate 3-kinase
Probab=98.42 E-value=1.9e-07 Score=78.53 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=41.2
Q ss_pred cccccccccc---CCccE-----EEEECCCCCcHHHHHHHHHHHHhhC--CCcEEEEcCcccc
Q 029613 18 GRLERQKLLN---QKGCV-----VWITGLSGSGKSTLAFSVNKELYSR--GKLSYILDGDNLR 70 (190)
Q Consensus 18 ~~l~~~sl~i---~~Gei-----i~L~G~nGsGKSTLlr~l~g~l~~~--~~g~i~~~g~~~~ 70 (190)
.+++++++.+ ++|+. ++|.|++|||||||++.|.+.+... ..+.+.+|+..+.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 4678888887 45554 9999999999999999999988432 2567788876553
No 472
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.42 E-value=2.8e-07 Score=73.56 Aligned_cols=35 Identities=34% Similarity=0.300 Sum_probs=28.9
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcE
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLS 61 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~ 61 (190)
.-.+..+++|.|+||||||||++.|++.+. +..|.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~-~~~g~ 63 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ-QDGEL 63 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhh-hccCC
Confidence 345678999999999999999999999884 44444
No 473
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.39 E-value=3.1e-07 Score=71.72 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=25.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++|++++|+||||||||||+++|++.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999976
No 474
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.38 E-value=2.7e-07 Score=80.22 Aligned_cols=50 Identities=30% Similarity=0.225 Sum_probs=44.1
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
+..+++++ +.+.+|++++|+|+||+|||||+++|++.. .++.|.+.+.|+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~~~gvI~~~Ge 194 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-SADLNVIALIGE 194 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEEec
Confidence 46789999 999999999999999999999999999976 677888887543
No 475
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.37 E-value=1.7e-06 Score=63.30 Aligned_cols=108 Identities=22% Similarity=0.293 Sum_probs=54.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccccc----CCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNL----GFSAEDRTENIRRVGEVAKLFADAGLICIA 107 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (190)
++.++|++||||||+++.+...+ + ...++.+.+...+...- ....+........+..........+...++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~---~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv 75 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL---G--AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV 75 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS---T--EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHC---C--CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 57899999999999999998754 2 55677666554322111 111111111122222333223344544444
Q ss_pred cccCccHHHHHHHHHhCC--CCCeEEEEeeCCchhhhhc
Q 029613 108 SLISPYRKDRDACRAMLP--DSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 108 ~~lS~g~kqr~iarall~--~~~il~vllDEP~~~ld~~ 144 (190)
.......++|...+.++. ..++..|+|+.|...+-.|
T Consensus 76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R 114 (143)
T PF13671_consen 76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRER 114 (143)
T ss_dssp ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHH
Confidence 433333345533333332 2234445888887776433
No 476
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.36 E-value=2.7e-07 Score=79.98 Aligned_cols=41 Identities=24% Similarity=0.184 Sum_probs=37.1
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG 58 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~ 58 (190)
+..+++++ |.+.+|++++|+|+||+|||||+++|++.. .++
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~d 182 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QAD 182 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCC
Confidence 46789999 999999999999999999999999999966 444
No 477
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.35 E-value=6.1e-07 Score=74.15 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=28.8
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEE
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYI 63 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~ 63 (190)
+...++||.|+|||||||++++|.+++.. +++|.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~ 96 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVE 96 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceE
Confidence 45689999999999999999999998842 4455443
No 478
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.34 E-value=4.5e-06 Score=73.35 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.0
Q ss_pred cccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++++.++.+.+|.+++|+||||+||||++..|++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHH
Confidence 455667778889999999999999999999999977
No 479
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=6.5e-07 Score=84.16 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=46.2
Q ss_pred eecccCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 106 IASLISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 106 ~~~~lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
.+..||+||+|| .+|++++.+| .++ +|||||++||+.+...+.+.+++.+..|
T Consensus 484 ~~~tLSGGE~QRv~LA~aL~~~~~~~ll--ILDEPtagLD~~~~~~L~~~L~~L~~~G 539 (924)
T TIGR00630 484 AAGTLSGGEAQRIRLATQIGSGLTGVLY--VLDEPSIGLHQRDNERLINTLKRLRDLG 539 (924)
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCcEE--EEcCCccCCCHHHHHHHHHHHHHHHhCC
Confidence 367899999999 6999999986 788 9999999999999999999988754444
No 480
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.33 E-value=7.1e-07 Score=76.46 Aligned_cols=52 Identities=19% Similarity=-0.015 Sum_probs=46.3
Q ss_pred ccccCcceeccCc-ccccc-----------ccccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 4 VGNSTNIFWQESP-IGRLE-----------RQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 4 ~l~~~~l~~~~~~-~~~l~-----------~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
-+.++|+++.|.+ ..+|+ |+.+.+.+|+.++|+||+|||||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 3678999999965 46786 9999999999999999999999999999998773
No 481
>PRK08149 ATP synthase SpaL; Validated
Probab=98.33 E-value=3.9e-07 Score=78.84 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=43.9
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC---cEEEEcCcccc
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK---LSYILDGDNLR 70 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~---g~i~~~g~~~~ 70 (190)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|++.. .++. |.|-.+++++.
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~-~~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS-EADVFVIGLIGERGREVT 193 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC-CCCeEEEEEEeeCCccHH
Confidence 456789999 999999999999999999999999999855 4443 45556666653
No 482
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.32 E-value=4.3e-07 Score=76.09 Aligned_cols=50 Identities=26% Similarity=0.185 Sum_probs=42.2
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
.+..+++.+ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+..-|
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~~vi~~iG 104 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGT-TADVNVIALIG 104 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCC-CCCEEEEEEEe
Confidence 357789999 999999999999999999999999999976 56666555533
No 483
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.31 E-value=6.9e-07 Score=84.12 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=46.1
Q ss_pred ecccCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 107 ASLISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 107 ~~~lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+..||+||+|| .+|++++.+| .++ +|||||++||+.+...+.+.+++.+..|
T Consensus 487 ~~~LSgGE~QRv~LA~aL~~~~~~~ll--ILDEPtagLd~~~~~~L~~~L~~L~~~G 541 (943)
T PRK00349 487 AGTLSGGEAQRIRLATQIGSGLTGVLY--VLDEPSIGLHQRDNDRLIETLKHLRDLG 541 (943)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCCcEE--EecCCccCCCHHHHHHHHHHHHHHHhCC
Confidence 67799999999 6999999987 888 9999999999999999999988754444
No 484
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=8.2e-06 Score=69.63 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.6
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..++++.++.+.+|.+++|+||||+||||++..|++.+
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567778889999999999999999999999999865
No 485
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.29 E-value=9.5e-07 Score=70.25 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
++||.|+|||||||+++.|.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999884
No 486
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.27 E-value=7.8e-07 Score=77.31 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=44.1
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
.+..+++++ +.+.+|++++|+|+||+|||||+++|++.. .++.+.+.+.|+
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~d~~vi~~iGe 199 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT-QCDVNVIALIGE 199 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCeEEEEEEcc
Confidence 456789999 999999999999999999999999999966 566777776664
No 487
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=1e-05 Score=74.43 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=32.5
Q ss_pred cccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++++.++.+.+|++++++||||+||||++..|++.+
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 466778888889999999999999999999999977
No 488
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.26 E-value=9.1e-06 Score=67.09 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=29.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
.++.++|++||||||+++.|+..+ + +.++++.+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~-~---~~~~l~~D~~r~ 39 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN-P---KAVNVNRDDLRQ 39 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC-C---CCEEEeccHHHH
Confidence 578899999999999999998865 2 456777766643
No 489
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.25 E-value=1.7e-06 Score=67.84 Aligned_cols=27 Identities=44% Similarity=0.608 Sum_probs=25.3
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++.+++|.|+||||||||++.|++.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999999987
No 490
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.24 E-value=9.2e-07 Score=76.71 Aligned_cols=48 Identities=23% Similarity=0.132 Sum_probs=42.1
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
+..+++++ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+.+.
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~i 179 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGA-SADVNVIALI 179 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCC-CCCEEEEEEE
Confidence 56789999 999999999999999999999999999966 6666766653
No 491
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.22 E-value=2.4e-05 Score=64.14 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=31.6
Q ss_pred cccccccccC-------CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 19 RLERQKLLNQ-------KGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 19 ~l~~~sl~i~-------~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
+++++++.+. +|++++++|+||+||||+++.|++.+.
T Consensus 57 v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 57 ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4677777775 458999999999999999999999874
No 492
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=9.6e-06 Score=70.22 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=25.6
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+.+|++++|+||||+||||+++.|++..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999864
No 493
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.22 E-value=1.1e-06 Score=67.20 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=23.3
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
|++++|+|||||||||+++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999976
No 494
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.21 E-value=1.2e-06 Score=76.21 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=41.1
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
+..+++++ |.+.+|+.++|+|+||+|||||+++|++.....+.+.+.+.|
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 45678888 999999999999999999999999999976333446666644
No 495
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.19 E-value=2.7e-06 Score=70.68 Aligned_cols=43 Identities=37% Similarity=0.369 Sum_probs=37.9
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK 59 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~ 59 (190)
..+++++++...++.+++|+|++|||||||+..+.+.+...+.
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~ 63 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGL 63 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4578999999999999999999999999999999997754443
No 496
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.19 E-value=1.3e-06 Score=76.07 Aligned_cols=48 Identities=25% Similarity=0.151 Sum_probs=40.8
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
+..+++.+ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+..-
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~i 197 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-EADVNVIALI 197 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCEEEEEEE
Confidence 46789999 999999999999999999999999999976 5555555443
No 497
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=4.4e-05 Score=65.24 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=34.9
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
++.+.+|++++|+||+||||||++..|+..+...+.-..+++.+..
T Consensus 200 ~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 5677899999999999999999999999876444433345555443
No 498
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.17 E-value=6.8e-06 Score=59.14 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.5
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
.+..+.|+|++|+||||+++.++..+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 478899999999999999999999774
No 499
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.17 E-value=1.6e-06 Score=74.88 Aligned_cols=52 Identities=29% Similarity=0.208 Sum_probs=44.4
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|++.. +++.+.+.+.|+.
T Consensus 123 tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~-~~~~gvi~~~Ger 174 (413)
T TIGR03497 123 TGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNA-KADINVIALIGER 174 (413)
T ss_pred ccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCeEEEEEEccc
Confidence 456789999 999999999999999999999999999966 6667777666643
No 500
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.17 E-value=1.5e-06 Score=75.13 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=42.0
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
+..+++ .+|.+.+|+.++|+|+||+|||||+++|++.. .+..+.+.+.|+
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~-~~~~gvi~~iGe 176 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNT-DADVVVIALVGE 176 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCC-CCCEEEEEEEee
Confidence 455665 69999999999999999999999999999976 667777766654
Done!