Query 029613
Match_columns 190
No_of_seqs 194 out of 2022
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 02:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pcj_A ABC transporter, lipopr 100.0 5.4E-35 1.8E-39 231.7 7.4 153 1-156 1-186 (224)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 7.9E-35 2.7E-39 244.6 8.3 152 1-155 1-183 (359)
3 2olj_A Amino acid ABC transpor 100.0 1.3E-34 4.3E-39 234.6 8.3 153 1-156 21-205 (263)
4 3gfo_A Cobalt import ATP-bindi 100.0 3E-34 1E-38 233.8 6.7 151 3-156 6-189 (275)
5 1b0u_A Histidine permease; ABC 100.0 4E-34 1.4E-38 231.6 6.9 151 3-156 5-199 (262)
6 1vpl_A ABC transporter, ATP-bi 100.0 8.5E-34 2.9E-38 229.0 8.6 150 4-156 15-192 (256)
7 3tui_C Methionine import ATP-b 100.0 6.1E-34 2.1E-38 239.5 7.3 152 2-156 22-209 (366)
8 3rlf_A Maltose/maltodextrin im 100.0 5.7E-34 1.9E-38 241.0 7.1 151 1-155 1-178 (381)
9 1sgw_A Putative ABC transporte 100.0 1.9E-33 6.7E-38 221.3 9.4 149 3-156 9-179 (214)
10 3tif_A Uncharacterized ABC tra 100.0 1.5E-33 5E-38 224.9 7.8 150 4-156 1-191 (235)
11 1g6h_A High-affinity branched- 100.0 1.4E-33 4.9E-38 227.7 7.5 151 3-156 6-199 (257)
12 1oxx_K GLCV, glucose, ABC tran 100.0 2.4E-33 8.2E-38 235.6 8.8 152 1-156 1-186 (353)
13 2ihy_A ABC transporter, ATP-bi 100.0 2.3E-33 7.9E-38 229.0 7.6 150 4-156 21-207 (279)
14 2yyz_A Sugar ABC transporter, 100.0 3.6E-33 1.2E-37 234.8 8.8 151 1-155 1-178 (359)
15 1z47_A CYSA, putative ABC-tran 100.0 6.2E-33 2.1E-37 233.0 10.0 150 3-155 13-190 (355)
16 2it1_A 362AA long hypothetical 100.0 4.4E-33 1.5E-37 234.5 9.1 152 1-156 1-179 (362)
17 4g1u_C Hemin import ATP-bindin 100.0 1.3E-33 4.3E-38 229.1 5.3 150 4-156 11-193 (266)
18 1ji0_A ABC transporter; ATP bi 100.0 3E-33 1E-37 223.8 6.2 151 3-156 5-185 (240)
19 1g29_1 MALK, maltose transport 100.0 4.5E-33 1.5E-37 235.4 7.3 151 1-155 1-184 (372)
20 1v43_A Sugar-binding transport 100.0 6.9E-33 2.4E-37 234.1 8.2 149 4-155 11-186 (372)
21 3d31_A Sulfate/molybdate ABC t 100.0 8.9E-33 3E-37 231.6 8.6 148 4-155 1-172 (348)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 7.2E-33 2.5E-37 222.8 7.4 157 1-160 1-193 (250)
23 2onk_A Molybdate/tungstate ABC 100.0 3.5E-32 1.2E-36 217.6 9.0 147 4-156 1-172 (240)
24 2yz2_A Putative ABC transporte 100.0 3.1E-32 1E-36 221.0 8.1 150 4-156 2-184 (266)
25 2ixe_A Antigen peptide transpo 100.0 2.9E-32 9.7E-37 221.7 7.7 151 3-156 15-202 (271)
26 2nq2_C Hypothetical ABC transp 100.0 2.3E-32 7.8E-37 220.3 6.7 149 1-156 1-174 (253)
27 1mv5_A LMRA, multidrug resista 100.0 1.3E-32 4.3E-37 220.4 5.1 150 4-156 1-185 (243)
28 2zu0_C Probable ATP-dependent 100.0 5E-32 1.7E-36 219.8 7.3 157 3-161 19-215 (267)
29 2ff7_A Alpha-hemolysin translo 100.0 2.8E-32 9.4E-37 219.1 5.4 149 5-156 8-191 (247)
30 2qi9_C Vitamin B12 import ATP- 100.0 4.1E-32 1.4E-36 218.3 4.6 148 1-156 1-179 (249)
31 3nh6_A ATP-binding cassette SU 100.0 5.8E-32 2E-36 223.2 4.7 150 4-156 53-236 (306)
32 2pjz_A Hypothetical protein ST 100.0 4.3E-31 1.5E-35 213.9 8.9 149 4-157 1-175 (263)
33 2pze_A Cystic fibrosis transme 100.0 3.5E-31 1.2E-35 210.3 7.5 148 1-153 3-173 (229)
34 2cbz_A Multidrug resistance-as 100.0 4.7E-32 1.6E-36 216.5 2.2 148 1-154 1-171 (237)
35 2ghi_A Transport protein; mult 100.0 2.7E-31 9.3E-36 214.7 6.5 149 4-156 17-201 (260)
36 3gd7_A Fusion complex of cysti 100.0 3.8E-31 1.3E-35 224.7 5.2 149 4-156 19-201 (390)
37 3b5x_A Lipid A export ATP-bind 100.0 2.5E-29 8.7E-34 223.4 8.0 150 4-156 341-526 (582)
38 3b60_A Lipid A export ATP-bind 100.0 2.5E-29 8.7E-34 223.4 4.6 150 4-156 341-526 (582)
39 3qf4_A ABC transporter, ATP-bi 99.9 6E-29 2E-33 221.3 4.7 150 4-156 341-525 (587)
40 2yl4_A ATP-binding cassette SU 99.9 4.9E-29 1.7E-33 222.1 3.7 148 5-155 342-528 (595)
41 4a82_A Cystic fibrosis transme 99.9 7.7E-29 2.6E-33 220.2 4.3 150 4-156 339-523 (578)
42 3qf4_B Uncharacterized ABC tra 99.9 9.5E-29 3.3E-33 220.4 3.7 149 5-156 355-537 (598)
43 2bbs_A Cystic fibrosis transme 99.9 6.5E-28 2.2E-32 197.7 6.4 143 4-153 40-202 (290)
44 4f4c_A Multidrug resistance pr 99.9 6.6E-27 2.3E-31 223.7 7.2 154 5-162 1077-1268(1321)
45 3ozx_A RNAse L inhibitor; ATP 99.9 3.1E-26 1.1E-30 201.8 7.9 148 4-155 269-430 (538)
46 4f4c_A Multidrug resistance pr 99.9 4.4E-26 1.5E-30 218.0 9.1 177 5-186 416-630 (1321)
47 3uie_A Adenylyl-sulfate kinase 99.9 1.7E-24 5.7E-29 167.7 16.4 175 8-183 3-177 (200)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 5.2E-26 1.8E-30 200.5 6.9 145 8-156 25-204 (538)
49 3bk7_A ABC transporter ATP-bin 99.9 2.3E-26 8E-31 205.1 4.6 145 8-156 95-274 (607)
50 3g5u_A MCG1178, multidrug resi 99.9 4.7E-26 1.6E-30 217.4 6.3 148 5-155 388-571 (1284)
51 3bk7_A ABC transporter ATP-bin 99.9 1.6E-25 5.4E-30 199.7 8.8 147 4-155 357-516 (607)
52 3g5u_A MCG1178, multidrug resi 99.9 4.4E-26 1.5E-30 217.5 4.6 148 5-155 1031-1216(1284)
53 1yqt_A RNAse L inhibitor; ATP- 99.9 1.8E-25 6.2E-30 197.0 7.9 147 4-155 287-446 (538)
54 2iw3_A Elongation factor 3A; a 99.9 5.5E-25 1.9E-29 203.6 8.2 62 4-66 671-734 (986)
55 3j16_B RLI1P; ribosome recycli 99.9 3.1E-24 1.1E-28 191.2 7.0 149 8-160 81-271 (608)
56 3ux8_A Excinuclease ABC, A sub 99.9 6.7E-24 2.3E-28 191.3 6.9 139 16-157 30-251 (670)
57 3j16_B RLI1P; ribosome recycli 99.9 3.4E-23 1.2E-27 184.6 9.0 143 8-155 350-512 (608)
58 2iw3_A Elongation factor 3A; a 99.9 2.2E-23 7.7E-28 192.9 8.1 142 5-155 436-593 (986)
59 3ozx_A RNAse L inhibitor; ATP 99.9 4.5E-23 1.6E-27 181.6 5.8 146 8-157 3-185 (538)
60 4gp7_A Metallophosphoesterase; 99.9 8.6E-23 2.9E-27 154.8 2.1 101 22-144 1-117 (171)
61 3ux8_A Excinuclease ABC, A sub 99.8 4E-21 1.4E-25 173.2 6.7 53 106-160 540-596 (670)
62 2npi_A Protein CLP1; CLP1-PCF1 99.8 1.6E-23 5.4E-28 181.4 -8.8 137 3-155 117-286 (460)
63 3b85_A Phosphate starvation-in 99.8 2.7E-22 9.3E-27 157.0 -2.6 130 12-156 8-146 (208)
64 2vf7_A UVRA2, excinuclease ABC 99.8 2.2E-20 7.7E-25 171.1 5.8 61 94-156 710-779 (842)
65 2v9p_A Replication protein E1; 99.8 2.1E-21 7.1E-26 159.9 -3.0 127 4-150 101-233 (305)
66 4aby_A DNA repair protein RECN 99.8 1.6E-19 5.5E-24 153.6 7.1 46 110-157 296-344 (415)
67 1z6g_A Guanylate kinase; struc 99.8 3.1E-20 1.1E-24 145.9 0.2 133 16-155 9-172 (218)
68 2r6f_A Excinuclease ABC subuni 99.8 5.4E-19 1.9E-23 163.0 8.0 60 95-156 826-894 (972)
69 1tq4_A IIGP1, interferon-induc 99.8 1E-20 3.5E-25 161.6 -4.2 127 17-155 36-211 (413)
70 2ygr_A Uvrabc system protein A 99.8 1.1E-18 3.7E-23 161.4 8.5 59 96-156 845-912 (993)
71 3cr8_A Sulfate adenylyltranfer 99.7 1.2E-17 4.1E-22 147.3 13.3 155 25-181 364-521 (552)
72 3pih_A Uvrabc system protein A 99.7 7.4E-18 2.5E-22 155.7 11.6 61 94-156 785-854 (916)
73 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.4E-18 4.7E-23 144.7 2.0 92 18-139 159-251 (330)
74 3aez_A Pantothenate kinase; tr 99.7 3.3E-19 1.1E-23 147.4 -1.8 131 4-142 43-208 (312)
75 1ye8_A Protein THEP1, hypothet 99.7 6E-18 2.1E-22 129.1 3.2 112 32-155 2-128 (178)
76 2eyu_A Twitching motility prot 99.7 2.3E-17 7.7E-22 133.1 6.5 118 4-156 5-123 (261)
77 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 7.5E-17 2.6E-21 135.8 9.3 55 106-162 276-337 (365)
78 1e69_A Chromosome segregation 99.7 1.1E-16 3.7E-21 132.5 9.6 48 107-156 217-269 (322)
79 3b9q_A Chloroplast SRP recepto 99.7 2.6E-17 8.9E-22 135.4 5.7 126 14-146 84-238 (302)
80 2pez_A Bifunctional 3'-phospho 99.7 3E-15 1E-19 113.3 15.0 154 28-182 3-158 (179)
81 1x6v_B Bifunctional 3'-phospho 99.6 2.4E-15 8.2E-20 134.1 15.0 174 8-182 26-205 (630)
82 2yvu_A Probable adenylyl-sulfa 99.6 1E-14 3.6E-19 110.9 15.0 158 24-182 7-166 (186)
83 1m7g_A Adenylylsulfate kinase; 99.6 3.6E-15 1.2E-19 115.9 12.6 173 9-182 4-185 (211)
84 1m8p_A Sulfate adenylyltransfe 99.6 4.5E-15 1.5E-19 131.6 14.0 155 27-182 393-549 (573)
85 2og2_A Putative signal recogni 99.6 5.3E-16 1.8E-20 130.3 7.0 118 21-146 148-295 (359)
86 2dpy_A FLII, flagellum-specifi 99.6 8.5E-16 2.9E-20 132.3 6.7 140 4-157 131-295 (438)
87 1tf7_A KAIC; homohexamer, hexa 99.6 5.5E-16 1.9E-20 136.1 5.6 149 3-162 11-177 (525)
88 1tf7_A KAIC; homohexamer, hexa 99.6 1.8E-15 6E-20 132.9 8.3 121 24-161 275-408 (525)
89 1pui_A ENGB, probable GTP-bind 99.6 1.2E-15 4.1E-20 117.5 5.9 145 1-155 1-195 (210)
90 2obl_A ESCN; ATPase, hydrolase 99.6 4.8E-15 1.7E-19 124.0 8.4 140 4-157 45-208 (347)
91 1htw_A HI0065; nucleotide-bind 99.6 2.7E-16 9.1E-21 117.9 0.3 64 5-70 8-71 (158)
92 2ehv_A Hypothetical protein PH 99.6 5.9E-15 2E-19 116.5 7.7 62 4-69 6-70 (251)
93 2jeo_A Uridine-cytidine kinase 99.5 1.2E-15 4E-20 121.5 2.5 125 13-142 8-147 (245)
94 3sop_A Neuronal-specific septi 99.5 5.7E-17 1.9E-21 131.4 -5.8 109 32-149 4-134 (270)
95 1ewq_A DNA mismatch repair pro 99.5 7.4E-15 2.5E-19 133.8 4.9 115 15-155 564-686 (765)
96 1cr0_A DNA primase/helicase; R 99.5 1.7E-14 5.8E-19 117.5 6.3 123 16-141 21-160 (296)
97 2o8b_B DNA mismatch repair pro 99.5 6.1E-15 2.1E-19 138.0 4.1 129 4-155 750-896 (1022)
98 4a74_A DNA repair and recombin 99.5 2.8E-14 9.7E-19 111.2 6.6 61 5-68 2-69 (231)
99 1znw_A Guanylate kinase, GMP k 99.5 4E-15 1.4E-19 115.4 1.5 36 17-54 9-44 (207)
100 2o5v_A DNA replication and rep 99.5 1.1E-13 3.8E-18 116.2 10.3 49 107-157 262-321 (359)
101 3thx_B DNA mismatch repair pro 99.5 6.8E-15 2.3E-19 136.1 2.6 115 16-154 659-779 (918)
102 3qkt_A DNA double-strand break 99.5 3.9E-13 1.3E-17 111.9 12.3 49 107-157 246-301 (339)
103 2gks_A Bifunctional SAT/APS ki 99.5 1.6E-12 5.5E-17 114.7 15.3 154 28-182 370-523 (546)
104 3jvv_A Twitching mobility prot 99.4 2E-13 6.7E-18 114.6 8.6 112 18-157 104-222 (356)
105 3thx_A DNA mismatch repair pro 99.4 7.1E-14 2.4E-18 129.6 5.7 116 16-154 648-768 (934)
106 1p9r_A General secretion pathw 99.4 3.7E-14 1.3E-18 121.3 1.2 63 4-69 143-205 (418)
107 2w0m_A SSO2452; RECA, SSPF, un 99.4 4.2E-13 1.4E-17 104.3 6.6 50 16-65 8-58 (235)
108 2i3b_A HCR-ntpase, human cance 99.4 1.1E-14 3.7E-19 112.1 -2.6 119 30-155 1-134 (189)
109 2ewv_A Twitching motility prot 99.4 5.7E-13 1.9E-17 112.4 7.0 93 19-138 127-219 (372)
110 1wb9_A DNA mismatch repair pro 99.4 2.9E-13 1E-17 123.9 5.3 115 15-154 593-713 (800)
111 2qag_C Septin-7; cell cycle, c 99.4 2.9E-14 9.9E-19 122.0 -1.3 47 2-54 9-55 (418)
112 2qnr_A Septin-2, protein NEDD5 99.3 2.2E-14 7.7E-19 117.7 -4.2 51 8-66 2-53 (301)
113 1lw7_A Transcriptional regulat 99.3 5.1E-13 1.7E-17 112.1 3.7 125 19-155 157-313 (365)
114 2qag_B Septin-6, protein NEDD5 99.3 6.3E-12 2.2E-16 107.5 10.2 147 5-155 17-203 (427)
115 3szr_A Interferon-induced GTP- 99.3 5.5E-14 1.9E-18 125.5 -3.0 139 4-155 10-179 (608)
116 2gza_A Type IV secretion syste 99.3 7E-13 2.4E-17 111.4 3.9 123 6-157 137-277 (361)
117 2qm8_A GTPase/ATPase; G protei 99.3 3.3E-13 1.1E-17 112.4 1.7 65 4-69 29-93 (337)
118 1nlf_A Regulatory protein REPA 99.3 1.5E-11 5.2E-16 99.3 11.4 105 26-146 26-153 (279)
119 1ls1_A Signal recognition part 99.3 4.1E-12 1.4E-16 104.0 8.1 125 6-153 78-206 (295)
120 4eun_A Thermoresistant glucoki 99.3 1.9E-11 6.4E-16 94.0 11.1 114 24-144 23-141 (200)
121 1zp6_A Hypothetical protein AT 99.3 5.8E-12 2E-16 95.6 7.7 102 26-130 5-131 (191)
122 3asz_A Uridine kinase; cytidin 99.3 1E-13 3.6E-18 107.2 -2.2 123 27-155 3-145 (211)
123 2cvh_A DNA repair and recombin 99.3 1.1E-11 3.9E-16 95.7 9.2 111 16-144 5-121 (220)
124 1pzn_A RAD51, DNA repair and r 99.3 4.9E-12 1.7E-16 105.8 7.1 110 17-144 117-247 (349)
125 1sq5_A Pantothenate kinase; P- 99.3 7.6E-13 2.6E-17 108.8 1.9 63 4-69 37-123 (308)
126 4ad8_A DNA repair protein RECN 99.3 7E-12 2.4E-16 109.8 7.7 46 109-156 396-445 (517)
127 1rj9_A FTSY, signal recognitio 99.3 1.1E-11 3.8E-16 101.9 8.3 41 29-70 101-141 (304)
128 3euj_A Chromosome partition pr 99.2 2.5E-12 8.5E-17 111.6 3.4 54 15-70 15-68 (483)
129 2kjq_A DNAA-related protein; s 99.2 2E-11 6.9E-16 90.2 6.1 75 29-155 35-109 (149)
130 3c8u_A Fructokinase; YP_612366 99.2 2.4E-13 8.3E-18 105.4 -4.7 44 27-70 19-64 (208)
131 1s96_A Guanylate kinase, GMP k 99.2 9.4E-12 3.2E-16 97.7 4.3 113 26-154 12-128 (219)
132 1knq_A Gluconate kinase; ALFA/ 99.2 2.2E-10 7.6E-15 85.8 11.4 110 28-144 6-120 (175)
133 3nwj_A ATSK2; P loop, shikimat 99.2 4E-12 1.4E-16 101.8 1.8 62 3-69 16-82 (250)
134 1vma_A Cell division protein F 99.2 9.9E-11 3.4E-15 96.3 9.4 98 22-139 96-197 (306)
135 1lvg_A Guanylate kinase, GMP k 99.2 6.4E-12 2.2E-16 96.8 1.8 27 28-54 2-28 (198)
136 3ec2_A DNA replication protein 99.1 1.8E-11 6.1E-16 92.4 3.8 95 24-155 32-128 (180)
137 2yhs_A FTSY, cell division pro 99.1 3.2E-10 1.1E-14 98.5 10.9 49 20-69 283-331 (503)
138 2f1r_A Molybdopterin-guanine d 99.1 7.5E-12 2.6E-16 94.7 -0.3 120 31-153 3-156 (171)
139 1odf_A YGR205W, hypothetical 3 99.0 5.1E-11 1.7E-15 97.3 2.5 114 26-145 27-169 (290)
140 2bbw_A Adenylate kinase 4, AK4 99.0 1.3E-11 4.3E-16 97.9 -1.5 36 29-65 26-64 (246)
141 1n0w_A DNA repair protein RAD5 99.0 7.1E-10 2.4E-14 86.8 7.6 52 17-68 10-68 (243)
142 3vaa_A Shikimate kinase, SK; s 99.0 2E-10 6.7E-15 88.2 4.0 38 17-54 12-49 (199)
143 2rcn_A Probable GTPase ENGC; Y 99.0 6.8E-11 2.3E-15 99.1 0.1 45 19-65 205-250 (358)
144 1qhl_A Protein (cell division 99.0 1.1E-11 3.7E-16 97.9 -4.6 57 4-69 9-65 (227)
145 3e70_C DPA, signal recognition 99.0 1.3E-09 4.5E-14 90.4 7.6 44 26-70 125-168 (328)
146 3lnc_A Guanylate kinase, GMP k 98.9 2.1E-10 7.3E-15 89.9 2.2 38 17-54 14-52 (231)
147 3tr0_A Guanylate kinase, GMP k 98.9 5.5E-10 1.9E-14 85.4 3.8 41 24-69 1-41 (205)
148 1qhx_A CPT, protein (chloramph 98.9 2.3E-08 7.9E-13 74.7 11.5 26 29-54 2-27 (178)
149 2bdt_A BH3686; alpha-beta prot 98.9 1.5E-08 5.2E-13 76.6 10.4 38 30-71 2-39 (189)
150 1udx_A The GTP-binding protein 98.9 3.1E-11 1.1E-15 103.1 -5.6 119 20-146 147-284 (416)
151 3t61_A Gluconokinase; PSI-biol 98.8 2.3E-08 7.9E-13 76.5 10.6 105 30-144 18-127 (202)
152 2oap_1 GSPE-2, type II secreti 98.8 5.1E-10 1.7E-14 98.0 1.0 51 17-68 247-297 (511)
153 3k1j_A LON protease, ATP-depen 98.8 8.7E-10 3E-14 98.2 2.1 61 9-69 39-99 (604)
154 2x8a_A Nuclear valosin-contain 98.8 5.4E-09 1.8E-13 84.4 5.8 54 12-70 28-81 (274)
155 1sxj_E Activator 1 40 kDa subu 98.8 2.9E-09 9.9E-14 88.0 4.3 39 31-69 37-75 (354)
156 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 2.5E-09 8.5E-14 78.9 3.3 49 107-157 55-110 (148)
157 3pih_A Uvrabc system protein A 98.8 1.3E-08 4.5E-13 94.3 8.0 66 95-162 445-518 (916)
158 1zu4_A FTSY; GTPase, signal re 98.8 3.4E-08 1.2E-12 81.5 9.8 48 21-69 96-143 (320)
159 1ixz_A ATP-dependent metallopr 98.8 1E-09 3.5E-14 87.0 0.6 59 6-69 27-85 (254)
160 2p5t_B PEZT; postsegregational 98.8 8E-08 2.7E-12 76.4 11.6 124 19-146 22-155 (253)
161 3kta_A Chromosome segregation 98.8 5.8E-09 2E-13 78.4 4.7 34 21-55 18-51 (182)
162 2px0_A Flagellar biosynthesis 98.8 4.1E-08 1.4E-12 80.2 10.1 101 28-152 103-204 (296)
163 1in4_A RUVB, holliday junction 98.8 1.6E-09 5.5E-14 89.7 1.6 51 4-54 18-75 (334)
164 1iy2_A ATP-dependent metallopr 98.7 1.3E-09 4.4E-14 87.8 0.5 59 6-69 51-109 (278)
165 3a00_A Guanylate kinase, GMP k 98.7 4.7E-09 1.6E-13 79.6 3.4 26 30-55 1-26 (186)
166 3lda_A DNA repair protein RAD5 98.7 1.6E-08 5.6E-13 85.9 6.7 44 25-68 173-222 (400)
167 2dr3_A UPF0273 protein PH0284; 98.7 5.6E-08 1.9E-12 75.9 9.0 53 16-68 8-61 (247)
168 1oix_A RAS-related protein RAB 98.7 1.6E-08 5.5E-13 76.7 5.6 34 118-155 155-188 (191)
169 1u0l_A Probable GTPase ENGC; p 98.7 3.5E-09 1.2E-13 86.6 1.3 45 25-70 164-211 (301)
170 3tqc_A Pantothenate kinase; bi 98.7 2.5E-09 8.4E-14 88.5 0.1 47 9-55 65-117 (321)
171 1kgd_A CASK, peripheral plasma 98.7 1.2E-08 4E-13 77.1 3.6 27 28-54 3-29 (180)
172 2j41_A Guanylate kinase; GMP, 98.6 1.2E-08 4.1E-13 77.9 3.1 30 25-54 1-30 (207)
173 3a4m_A L-seryl-tRNA(SEC) kinas 98.6 1.3E-06 4.6E-11 69.5 14.5 43 29-71 3-45 (260)
174 1rz3_A Hypothetical protein rb 98.6 3E-08 1E-12 76.1 4.0 40 26-66 18-57 (201)
175 2p67_A LAO/AO transport system 98.6 1.5E-08 5E-13 84.3 2.4 53 4-56 30-82 (341)
176 1t9h_A YLOQ, probable GTPase E 98.6 6.8E-09 2.3E-13 85.3 0.1 44 25-69 168-214 (307)
177 2yv5_A YJEQ protein; hydrolase 98.6 1.8E-08 6.1E-13 82.5 2.2 43 25-69 160-205 (302)
178 4e22_A Cytidylate kinase; P-lo 98.5 5.6E-09 1.9E-13 83.2 -1.1 35 28-63 25-62 (252)
179 3kta_B Chromosome segregation 98.5 3.9E-08 1.3E-12 74.3 3.3 48 107-156 62-114 (173)
180 2vf7_A UVRA2, excinuclease ABC 98.5 5.3E-08 1.8E-12 89.5 4.7 62 97-160 362-431 (842)
181 1svm_A Large T antigen; AAA+ f 98.5 3.7E-08 1.3E-12 83.1 3.3 38 17-54 156-193 (377)
182 2vp4_A Deoxynucleoside kinase; 98.5 3.1E-08 1.1E-12 77.6 2.7 45 21-70 11-55 (230)
183 2f9l_A RAB11B, member RAS onco 98.5 1E-07 3.5E-12 72.4 5.1 34 118-155 131-164 (199)
184 3tau_A Guanylate kinase, GMP k 98.5 6.4E-08 2.2E-12 74.7 3.6 27 28-54 6-32 (208)
185 2r6f_A Excinuclease ABC subuni 98.5 1.8E-07 6.1E-12 86.8 6.6 53 106-160 501-556 (972)
186 2ffh_A Protein (FFH); SRP54, s 98.5 8E-07 2.7E-11 76.0 9.9 56 8-68 80-135 (425)
187 2zr9_A Protein RECA, recombina 98.4 6.7E-07 2.3E-11 74.6 8.9 99 18-141 47-152 (349)
188 1w1w_A Structural maintenance 98.4 1.2E-07 4.1E-12 81.0 3.9 46 109-156 333-383 (430)
189 2ygr_A Uvrabc system protein A 98.4 2.1E-07 7.3E-12 86.5 5.7 53 106-160 518-573 (993)
190 1j8m_F SRP54, signal recogniti 98.4 9.8E-07 3.4E-11 72.0 9.0 57 8-67 78-135 (297)
191 3m6a_A ATP-dependent protease 98.4 4.9E-08 1.7E-12 86.0 1.3 59 6-66 85-143 (543)
192 2r6a_A DNAB helicase, replicat 98.4 3.1E-06 1.1E-10 72.8 12.2 123 17-142 190-327 (454)
193 1kag_A SKI, shikimate kinase I 98.4 1.4E-07 4.8E-12 70.0 3.2 36 29-69 3-38 (173)
194 2ce7_A Cell division protein F 98.4 2.6E-07 9E-12 80.1 5.2 35 18-54 39-73 (476)
195 1ly1_A Polynucleotide kinase; 98.4 2.2E-06 7.4E-11 63.6 9.4 36 31-70 3-38 (181)
196 3ney_A 55 kDa erythrocyte memb 98.4 2.8E-07 9.6E-12 71.0 4.5 32 23-54 12-43 (197)
197 2ius_A DNA translocase FTSK; n 98.3 1.2E-07 3.9E-12 82.9 1.5 143 21-164 158-336 (512)
198 1nij_A Hypothetical protein YJ 98.3 1E-07 3.5E-12 78.4 0.6 39 31-69 5-50 (318)
199 2rhm_A Putative kinase; P-loop 98.3 3.4E-06 1.2E-10 63.3 8.9 38 28-70 3-40 (193)
200 3zvl_A Bifunctional polynucleo 98.3 1.2E-06 4E-11 74.7 7.0 99 24-145 252-354 (416)
201 4eaq_A DTMP kinase, thymidylat 98.3 8.6E-07 2.9E-11 69.6 5.4 45 18-64 11-58 (229)
202 3ice_A Transcription terminati 98.3 7.9E-07 2.7E-11 75.1 5.4 51 5-55 134-199 (422)
203 2dhr_A FTSH; AAA+ protein, hex 98.3 3.1E-07 1.1E-11 80.1 2.9 58 7-69 43-100 (499)
204 2qt1_A Nicotinamide riboside k 98.2 5.5E-07 1.9E-11 69.0 3.4 34 21-54 12-45 (207)
205 3kl4_A SRP54, signal recogniti 98.2 7.3E-06 2.5E-10 70.2 10.2 39 29-67 96-134 (433)
206 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 8.8E-07 3E-11 75.0 4.0 40 26-66 16-67 (392)
207 1cke_A CK, MSSA, protein (cyti 98.2 1E-06 3.4E-11 68.1 4.1 25 30-54 5-29 (227)
208 4a1f_A DNAB helicase, replicat 98.2 3.8E-06 1.3E-10 69.8 7.5 49 17-65 33-81 (338)
209 1gvn_B Zeta; postsegregational 98.2 1.6E-05 5.5E-10 64.3 11.1 42 26-70 29-70 (287)
210 1f2t_A RAD50 ABC-ATPase; DNA d 98.2 1.3E-06 4.6E-11 64.0 4.2 30 24-54 18-47 (149)
211 1sxj_C Activator 1 40 kDa subu 98.2 5E-07 1.7E-11 74.5 2.0 49 7-55 21-71 (340)
212 1y63_A LMAJ004144AAA protein; 98.1 1.9E-06 6.6E-11 64.9 4.3 43 22-68 2-44 (184)
213 2c95_A Adenylate kinase 1; tra 98.1 2.1E-05 7.2E-10 59.0 9.9 27 28-54 7-33 (196)
214 1g8f_A Sulfate adenylyltransfe 98.1 1.1E-05 3.9E-10 70.4 8.9 42 27-68 392-435 (511)
215 2qby_A CDC6 homolog 1, cell di 98.1 8.1E-06 2.8E-10 67.3 7.2 28 28-55 43-70 (386)
216 2ga8_A Hypothetical 39.9 kDa p 98.0 1.9E-06 6.5E-11 71.9 2.8 38 18-55 10-49 (359)
217 1jjv_A Dephospho-COA kinase; P 98.0 2.3E-06 8E-11 65.3 3.0 33 31-69 3-35 (206)
218 2www_A Methylmalonic aciduria 98.0 3.4E-06 1.2E-10 70.2 4.2 36 28-64 72-107 (349)
219 2qor_A Guanylate kinase; phosp 98.0 2.4E-06 8.3E-11 65.3 3.1 28 27-54 9-36 (204)
220 1ltq_A Polynucleotide kinase; 98.0 2.2E-05 7.5E-10 63.3 8.9 36 31-70 3-38 (301)
221 3hr8_A Protein RECA; alpha and 98.0 5.4E-06 1.8E-10 69.3 5.1 52 17-68 46-99 (356)
222 3cm0_A Adenylate kinase; ATP-b 98.0 4.1E-06 1.4E-10 62.6 3.9 27 28-54 2-28 (186)
223 1fnn_A CDC6P, cell division co 98.0 3.9E-05 1.4E-09 63.4 10.2 38 28-65 40-80 (389)
224 3bh0_A DNAB-like replicative h 98.0 7.6E-06 2.6E-10 67.1 5.7 51 16-66 54-104 (315)
225 2if2_A Dephospho-COA kinase; a 98.0 3.7E-06 1.3E-10 64.0 3.3 22 32-54 3-24 (204)
226 3t34_A Dynamin-related protein 98.0 2.5E-06 8.7E-11 71.0 2.4 52 6-60 10-65 (360)
227 1w1w_A Structural maintenance 97.9 4.3E-06 1.5E-10 71.3 3.1 45 5-55 7-51 (430)
228 3qks_A DNA double-strand break 97.9 7.8E-06 2.7E-10 62.9 4.2 32 23-55 17-48 (203)
229 3kb2_A SPBC2 prophage-derived 97.9 7.2E-06 2.5E-10 60.3 3.8 34 32-70 3-36 (173)
230 1v5w_A DMC1, meiotic recombina 97.9 4.6E-05 1.6E-09 63.1 8.9 43 26-68 118-166 (343)
231 1lv7_A FTSH; alpha/beta domain 97.9 1.6E-05 5.6E-10 62.6 5.8 46 20-70 37-82 (257)
232 2qtf_A Protein HFLX, GTP-bindi 97.9 4.9E-05 1.7E-09 63.6 9.0 40 29-68 177-227 (364)
233 1q3t_A Cytidylate kinase; nucl 97.9 1.1E-05 3.7E-10 63.1 4.2 28 27-54 13-40 (236)
234 2z43_A DNA repair and recombin 97.9 4.1E-05 1.4E-09 62.9 7.8 43 26-68 103-151 (324)
235 1ypw_A Transitional endoplasmi 97.9 3E-05 1E-09 71.2 7.7 43 24-69 232-274 (806)
236 3auy_A DNA double-strand break 97.8 7.5E-06 2.6E-10 68.5 3.2 47 108-156 279-333 (371)
237 3dm5_A SRP54, signal recogniti 97.8 0.00015 5.1E-09 62.2 11.2 41 29-69 99-139 (443)
238 1kht_A Adenylate kinase; phosp 97.8 1.3E-05 4.3E-10 59.9 4.1 27 29-55 2-28 (192)
239 3b9p_A CG5977-PA, isoform A; A 97.8 4.2E-05 1.4E-09 61.4 7.4 27 28-54 52-78 (297)
240 3iij_A Coilin-interacting nucl 97.8 1.3E-05 4.4E-10 59.8 3.9 29 26-54 7-35 (180)
241 1np6_A Molybdopterin-guanine d 97.8 2.5E-05 8.4E-10 58.8 5.3 36 31-66 7-44 (174)
242 1via_A Shikimate kinase; struc 97.8 1.4E-05 4.6E-10 59.4 3.3 33 32-69 6-38 (175)
243 3trf_A Shikimate kinase, SK; a 97.8 1.8E-05 6.2E-10 59.1 4.0 36 29-69 4-39 (185)
244 1f6b_A SAR1; gtpases, N-termin 97.7 5.4E-06 1.9E-10 62.9 0.7 41 11-52 6-47 (198)
245 3lw7_A Adenylate kinase relate 97.7 1.6E-05 5.4E-10 58.2 3.2 20 31-50 2-21 (179)
246 3r20_A Cytidylate kinase; stru 97.7 1.9E-05 6.6E-10 62.2 3.9 26 29-54 8-33 (233)
247 2xau_A PRE-mRNA-splicing facto 97.7 4.3E-05 1.5E-09 69.9 6.7 111 26-154 105-235 (773)
248 2qag_A Septin-2, protein NEDD5 97.7 3.7E-06 1.3E-10 70.3 -0.3 44 4-53 17-60 (361)
249 1nn5_A Similar to deoxythymidy 97.7 3.7E-05 1.3E-09 58.5 5.4 31 28-58 7-37 (215)
250 2plr_A DTMP kinase, probable t 97.7 2.3E-05 7.9E-10 59.4 4.1 27 29-55 3-29 (213)
251 1u94_A RECA protein, recombina 97.7 0.00014 4.9E-09 60.6 9.2 41 27-67 60-100 (356)
252 2ze6_A Isopentenyl transferase 97.7 2.1E-05 7.1E-10 62.4 3.9 24 31-54 2-25 (253)
253 2bwj_A Adenylate kinase 5; pho 97.7 1.1E-05 3.6E-10 60.9 2.0 29 26-54 8-36 (199)
254 1nks_A Adenylate kinase; therm 97.7 3.9E-05 1.3E-09 57.2 5.1 34 32-65 3-36 (194)
255 2wwf_A Thymidilate kinase, put 97.7 2.3E-05 7.8E-10 59.7 3.9 30 28-57 8-37 (212)
256 2jaq_A Deoxyguanosine kinase; 97.7 2.3E-05 7.9E-10 59.1 3.9 23 32-54 2-24 (205)
257 4fcw_A Chaperone protein CLPB; 97.7 1.1E-05 3.9E-10 65.0 2.2 52 15-66 21-83 (311)
258 2axn_A 6-phosphofructo-2-kinas 97.7 0.00014 4.9E-09 63.5 9.3 43 28-70 33-75 (520)
259 1tev_A UMP-CMP kinase; ploop, 97.7 2.8E-05 9.6E-10 58.1 4.0 26 29-54 2-27 (196)
260 1vht_A Dephospho-COA kinase; s 97.7 2.7E-05 9.1E-10 59.9 3.9 24 29-52 3-26 (218)
261 2pbr_A DTMP kinase, thymidylat 97.7 5.7E-05 1.9E-09 56.4 5.2 33 32-64 2-34 (195)
262 2gj8_A MNME, tRNA modification 97.6 2.2E-05 7.4E-10 58.1 2.8 26 28-53 2-27 (172)
263 2v54_A DTMP kinase, thymidylat 97.6 3.4E-05 1.2E-09 58.3 4.0 26 29-54 3-28 (204)
264 3cf0_A Transitional endoplasmi 97.6 3.2E-05 1.1E-09 62.7 4.0 41 25-68 44-84 (301)
265 1ega_A Protein (GTP-binding pr 97.6 2E-05 7E-10 64.1 2.8 27 27-53 5-31 (301)
266 2z0h_A DTMP kinase, thymidylat 97.6 5.8E-05 2E-09 56.6 5.2 29 32-60 2-30 (197)
267 1a7j_A Phosphoribulokinase; tr 97.6 2.3E-05 7.9E-10 63.6 3.0 42 29-70 4-45 (290)
268 1uf9_A TT1252 protein; P-loop, 97.6 3.2E-05 1.1E-09 58.3 3.6 35 29-69 7-41 (203)
269 3ake_A Cytidylate kinase; CMP 97.6 3.6E-05 1.2E-09 58.3 3.8 23 32-54 4-26 (208)
270 1zuh_A Shikimate kinase; alpha 97.6 4.1E-05 1.4E-09 56.4 4.0 25 30-54 7-31 (168)
271 2vli_A Antibiotic resistance p 97.6 2.1E-05 7.3E-10 58.4 2.4 26 29-54 4-29 (183)
272 1aky_A Adenylate kinase; ATP:A 97.6 4.2E-05 1.4E-09 58.9 4.2 27 28-54 2-28 (220)
273 2v1u_A Cell division control p 97.6 0.00054 1.8E-08 56.3 11.2 28 28-55 42-69 (387)
274 1gtv_A TMK, thymidylate kinase 97.6 1.7E-05 6E-10 60.4 1.7 24 32-55 2-25 (214)
275 2cdn_A Adenylate kinase; phosp 97.6 5.2E-05 1.8E-09 57.5 4.3 27 28-54 18-44 (201)
276 2iyv_A Shikimate kinase, SK; t 97.6 3.5E-05 1.2E-09 57.5 3.2 34 31-69 3-36 (184)
277 3bos_A Putative DNA replicatio 97.6 9.6E-05 3.3E-09 56.8 5.5 40 29-68 51-90 (242)
278 1uj2_A Uridine-cytidine kinase 97.6 6E-05 2E-09 59.4 4.4 42 29-70 21-67 (252)
279 1m2o_B GTP-binding protein SAR 97.5 4.5E-05 1.5E-09 57.3 3.3 34 18-52 12-45 (190)
280 1xjc_A MOBB protein homolog; s 97.5 0.00011 3.7E-09 55.1 5.4 28 31-58 5-32 (169)
281 1e6c_A Shikimate kinase; phosp 97.5 4.7E-05 1.6E-09 56.0 3.3 24 31-54 3-26 (173)
282 1qf9_A UMP/CMP kinase, protein 97.5 6.5E-05 2.2E-09 56.0 4.1 25 30-54 6-30 (194)
283 3umf_A Adenylate kinase; rossm 97.5 7.3E-05 2.5E-09 58.2 4.4 32 23-54 22-53 (217)
284 3auy_A DNA double-strand break 97.5 4.3E-05 1.5E-09 63.9 3.2 31 21-52 17-47 (371)
285 2pt5_A Shikimate kinase, SK; a 97.5 6.8E-05 2.3E-09 54.9 3.9 23 32-54 2-24 (168)
286 3fb4_A Adenylate kinase; psych 97.5 7E-05 2.4E-09 57.3 3.8 23 32-54 2-24 (216)
287 1ukz_A Uridylate kinase; trans 97.5 7.6E-05 2.6E-09 56.5 3.9 27 28-54 13-39 (203)
288 1zd8_A GTP:AMP phosphotransfer 97.5 6.1E-05 2.1E-09 58.3 3.3 27 28-54 5-31 (227)
289 1zak_A Adenylate kinase; ATP:A 97.5 6.4E-05 2.2E-09 57.9 3.4 26 29-54 4-29 (222)
290 3tlx_A Adenylate kinase 2; str 97.5 9E-05 3.1E-09 58.3 4.2 28 27-54 26-53 (243)
291 2wji_A Ferrous iron transport 97.5 5.4E-05 1.8E-09 55.4 2.7 23 31-53 4-26 (165)
292 2w58_A DNAI, primosome compone 97.4 0.00018 6E-09 54.4 5.4 26 31-56 55-80 (202)
293 1ex7_A Guanylate kinase; subst 97.4 7.3E-05 2.5E-09 56.8 3.2 22 33-54 4-25 (186)
294 4edh_A DTMP kinase, thymidylat 97.4 0.0002 6.7E-09 55.5 5.6 36 28-63 4-39 (213)
295 4ag6_A VIRB4 ATPase, type IV s 97.4 0.00014 4.7E-09 61.0 5.1 37 29-65 34-70 (392)
296 2ohf_A Protein OLA1, GTP-bindi 97.4 7.9E-05 2.7E-09 63.0 3.5 29 25-53 17-45 (396)
297 3dl0_A Adenylate kinase; phosp 97.4 8.6E-05 2.9E-09 56.8 3.4 23 32-54 2-24 (216)
298 3be4_A Adenylate kinase; malar 97.4 0.0001 3.5E-09 56.7 3.7 26 29-54 4-29 (217)
299 2grj_A Dephospho-COA kinase; T 97.4 0.00011 3.8E-09 56.0 3.8 36 29-69 11-46 (192)
300 1mky_A Probable GTP-binding pr 97.4 9.7E-05 3.3E-09 63.1 3.5 39 31-69 181-230 (439)
301 2wjg_A FEOB, ferrous iron tran 97.3 9.9E-05 3.4E-09 54.7 3.0 23 31-53 8-30 (188)
302 2xb4_A Adenylate kinase; ATP-b 97.3 0.00015 5.2E-09 56.1 3.9 23 32-54 2-24 (223)
303 1ak2_A Adenylate kinase isoenz 97.3 0.00019 6.4E-09 55.9 4.3 27 28-54 14-40 (233)
304 1jbk_A CLPB protein; beta barr 97.3 0.00042 1.4E-08 50.8 5.9 28 28-55 41-68 (195)
305 1l8q_A Chromosomal replication 97.3 0.00022 7.6E-09 58.0 4.7 37 29-65 36-72 (324)
306 2zej_A Dardarin, leucine-rich 97.3 8.9E-05 3E-09 55.2 2.1 22 32-53 4-25 (184)
307 2q6t_A DNAB replication FORK h 97.3 0.0011 3.8E-08 56.6 9.1 51 17-67 187-238 (444)
308 3lv8_A DTMP kinase, thymidylat 97.3 0.00034 1.1E-08 55.1 5.3 31 29-59 26-56 (236)
309 1njg_A DNA polymerase III subu 97.3 8.3E-05 2.8E-09 56.7 1.7 37 19-55 31-70 (250)
310 2f6r_A COA synthase, bifunctio 97.2 0.00016 5.6E-09 58.1 3.4 24 29-52 74-97 (281)
311 1e4v_A Adenylate kinase; trans 97.2 0.00018 6.3E-09 55.1 3.6 23 32-54 2-24 (214)
312 3sr0_A Adenylate kinase; phosp 97.2 0.00021 7.2E-09 55.1 3.8 23 32-54 2-24 (206)
313 1sxj_D Activator 1 41 kDa subu 97.2 0.00015 5.1E-09 59.2 3.2 41 15-55 41-83 (353)
314 4tmk_A Protein (thymidylate ki 97.2 0.00034 1.2E-08 54.2 4.9 30 29-58 2-31 (213)
315 2xxa_A Signal recognition part 97.2 0.0027 9.3E-08 54.2 10.7 46 24-69 94-140 (433)
316 3v9p_A DTMP kinase, thymidylat 97.2 0.00029 9.9E-09 55.1 4.3 29 28-56 23-51 (227)
317 2h92_A Cytidylate kinase; ross 97.2 0.0002 6.8E-09 54.8 3.2 25 30-54 3-27 (219)
318 2dy1_A Elongation factor G; tr 97.2 0.0002 6.9E-09 64.4 3.6 31 24-54 3-33 (665)
319 3h4m_A Proteasome-activating n 97.2 0.00025 8.4E-09 56.4 3.7 28 27-54 48-75 (285)
320 1ypw_A Transitional endoplasmi 97.2 0.00018 6.1E-09 66.1 3.2 43 23-68 504-546 (806)
321 3ld9_A DTMP kinase, thymidylat 97.1 0.00036 1.2E-08 54.5 4.2 30 27-56 18-47 (223)
322 3lxx_A GTPase IMAP family memb 97.1 0.00021 7.1E-09 55.6 2.8 24 31-54 30-53 (239)
323 2p65_A Hypothetical protein PF 97.1 0.00062 2.1E-08 49.9 5.1 28 28-55 41-68 (187)
324 3d3q_A TRNA delta(2)-isopenten 97.1 0.0003 1E-08 58.3 3.5 24 31-54 8-31 (340)
325 4hlc_A DTMP kinase, thymidylat 97.1 0.00073 2.5E-08 51.9 5.5 32 30-62 2-33 (205)
326 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.00048 1.6E-08 53.9 4.4 38 28-68 37-74 (262)
327 2qby_B CDC6 homolog 3, cell di 97.1 0.0044 1.5E-07 50.9 10.5 28 28-55 43-70 (384)
328 1qvr_A CLPB protein; coiled co 97.1 0.00053 1.8E-08 63.2 5.3 39 31-69 589-627 (854)
329 3k53_A Ferrous iron transport 97.1 0.00023 7.9E-09 56.6 2.5 23 32-54 5-27 (271)
330 2r62_A Cell division protease 97.0 0.00018 6.2E-09 56.8 1.7 28 25-54 41-68 (268)
331 2orw_A Thymidine kinase; TMTK, 97.0 0.00082 2.8E-08 50.6 5.2 31 29-59 2-32 (184)
332 3tmk_A Thymidylate kinase; pho 97.0 0.00048 1.6E-08 53.5 3.9 28 28-55 3-30 (216)
333 2ocp_A DGK, deoxyguanosine kin 97.0 0.00038 1.3E-08 54.3 3.3 26 29-54 1-26 (241)
334 3p32_A Probable GTPase RV1496/ 97.0 0.00073 2.5E-08 56.0 5.2 39 27-65 76-114 (355)
335 2ged_A SR-beta, signal recogni 97.0 0.00042 1.4E-08 51.5 3.3 25 29-53 47-71 (193)
336 3llm_A ATP-dependent RNA helic 97.0 0.00029 9.9E-09 54.8 2.5 30 23-52 69-98 (235)
337 3crm_A TRNA delta(2)-isopenten 97.0 0.00042 1.5E-08 57.0 3.4 24 31-54 6-29 (323)
338 1z2a_A RAS-related protein RAB 97.0 0.00046 1.6E-08 49.7 3.3 22 32-53 7-28 (168)
339 3syl_A Protein CBBX; photosynt 97.0 0.001 3.4E-08 53.4 5.6 29 28-56 65-93 (309)
340 1kao_A RAP2A; GTP-binding prot 96.9 0.00052 1.8E-08 49.2 3.3 22 32-53 5-26 (167)
341 1ko7_A HPR kinase/phosphatase; 96.9 0.00035 1.2E-08 57.3 2.6 37 15-52 130-166 (314)
342 3a8t_A Adenylate isopentenyltr 96.9 0.00053 1.8E-08 56.8 3.7 27 28-54 38-64 (339)
343 2dyk_A GTP-binding protein; GT 96.9 0.00055 1.9E-08 49.0 3.3 22 32-53 3-24 (161)
344 1u8z_A RAS-related protein RAL 96.9 0.00055 1.9E-08 49.1 3.3 22 32-53 6-27 (168)
345 2ce2_X GTPase HRAS; signaling 96.9 0.00049 1.7E-08 49.2 3.0 22 32-53 5-26 (166)
346 1z0j_A RAB-22, RAS-related pro 96.9 0.0006 2.1E-08 49.2 3.3 23 32-54 8-30 (170)
347 2z4s_A Chromosomal replication 96.9 0.0007 2.4E-08 57.9 4.2 26 30-55 130-155 (440)
348 1ek0_A Protein (GTP-binding pr 96.9 0.00061 2.1E-08 49.0 3.3 22 32-53 5-26 (170)
349 1ky3_A GTP-binding protein YPT 96.9 0.00062 2.1E-08 49.7 3.3 23 31-53 9-31 (182)
350 1z08_A RAS-related protein RAB 96.9 0.00063 2.2E-08 49.1 3.3 22 32-53 8-29 (170)
351 1c1y_A RAS-related protein RAP 96.9 0.00063 2.2E-08 48.9 3.3 22 32-53 5-26 (167)
352 3t15_A Ribulose bisphosphate c 96.9 0.00084 2.9E-08 54.2 4.3 28 27-54 33-60 (293)
353 2qmh_A HPR kinase/phosphorylas 96.9 0.00062 2.1E-08 52.4 3.3 35 18-53 23-57 (205)
354 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.00065 2.2E-08 49.5 3.3 22 32-53 9-30 (177)
355 3hjn_A DTMP kinase, thymidylat 96.9 0.0014 4.9E-08 49.9 5.3 33 32-64 2-34 (197)
356 1xp8_A RECA protein, recombina 96.9 0.0011 3.9E-08 55.4 5.1 42 26-67 70-111 (366)
357 2erx_A GTP-binding protein DI- 96.8 0.00055 1.9E-08 49.4 2.8 21 32-52 5-25 (172)
358 1g16_A RAS-related protein SEC 96.8 0.0006 2.1E-08 49.2 3.0 22 32-53 5-26 (170)
359 2nzj_A GTP-binding protein REM 96.8 0.0005 1.7E-08 49.9 2.6 22 32-53 6-27 (175)
360 2v3c_C SRP54, signal recogniti 96.8 0.00069 2.4E-08 57.9 3.7 40 30-69 99-138 (432)
361 1jal_A YCHF protein; nucleotid 96.8 0.00079 2.7E-08 56.3 4.0 23 30-52 2-24 (363)
362 2lkc_A Translation initiation 96.8 0.00075 2.6E-08 49.2 3.5 26 28-53 6-31 (178)
363 3exa_A TRNA delta(2)-isopenten 96.8 0.00072 2.5E-08 55.5 3.6 25 30-54 3-27 (322)
364 4b4t_M 26S protease regulatory 96.8 0.0036 1.2E-07 53.5 8.0 41 26-69 211-251 (434)
365 2fn4_A P23, RAS-related protei 96.8 0.00066 2.2E-08 49.5 3.0 23 31-53 10-32 (181)
366 3foz_A TRNA delta(2)-isopenten 96.8 0.0013 4.5E-08 53.9 5.0 25 30-54 10-34 (316)
367 2zts_A Putative uncharacterize 96.8 0.0012 4.2E-08 50.9 4.7 37 15-51 14-51 (251)
368 3n70_A Transport activator; si 96.8 0.00076 2.6E-08 48.5 3.3 28 27-54 21-48 (145)
369 3t1o_A Gliding protein MGLA; G 96.8 0.00073 2.5E-08 50.0 3.3 23 32-54 16-38 (198)
370 1r2q_A RAS-related protein RAB 96.8 0.00076 2.6E-08 48.5 3.3 22 32-53 8-29 (170)
371 4b4t_J 26S protease regulatory 96.8 0.0029 9.9E-08 53.6 7.2 40 27-69 179-218 (405)
372 1p5z_B DCK, deoxycytidine kina 96.8 0.00036 1.2E-08 55.2 1.6 27 28-54 22-48 (263)
373 3clv_A RAB5 protein, putative; 96.8 0.00077 2.6E-08 49.9 3.3 23 31-53 8-30 (208)
374 4b4t_K 26S protease regulatory 96.8 0.0032 1.1E-07 53.7 7.5 40 27-69 203-242 (428)
375 4dsu_A GTPase KRAS, isoform 2B 96.8 0.00079 2.7E-08 49.5 3.3 22 32-53 6-27 (189)
376 3bc1_A RAS-related protein RAB 96.8 0.0008 2.7E-08 49.6 3.3 22 32-53 13-34 (195)
377 2oil_A CATX-8, RAS-related pro 96.8 0.0008 2.7E-08 50.0 3.3 23 31-53 26-48 (193)
378 2b8t_A Thymidine kinase; deoxy 96.8 0.0019 6.6E-08 50.3 5.5 37 28-64 10-46 (223)
379 3q85_A GTP-binding protein REM 96.8 0.00061 2.1E-08 49.3 2.5 21 32-52 4-24 (169)
380 3b1v_A Ferrous iron uptake tra 96.8 0.00063 2.1E-08 54.5 2.8 23 31-53 4-26 (272)
381 1upt_A ARL1, ADP-ribosylation 96.8 0.00086 2.9E-08 48.5 3.3 24 30-53 7-30 (171)
382 1bif_A 6-phosphofructo-2-kinas 96.7 0.0017 5.7E-08 55.9 5.5 39 28-66 37-75 (469)
383 3gmt_A Adenylate kinase; ssgci 96.7 0.00099 3.4E-08 52.3 3.7 25 30-54 8-32 (230)
384 1r8s_A ADP-ribosylation factor 96.7 0.00092 3.2E-08 48.0 3.3 22 33-54 3-24 (164)
385 3q72_A GTP-binding protein RAD 96.7 0.00043 1.5E-08 49.9 1.4 21 32-52 4-24 (166)
386 2qgz_A Helicase loader, putati 96.7 0.002 6.7E-08 52.5 5.5 29 30-58 152-181 (308)
387 4b4t_L 26S protease subunit RP 96.7 0.0016 5.6E-08 55.7 5.1 40 26-68 211-250 (437)
388 2a9k_A RAS-related protein RAL 96.7 0.00095 3.2E-08 48.9 3.3 23 31-53 19-41 (187)
389 1z0f_A RAB14, member RAS oncog 96.7 0.00096 3.3E-08 48.5 3.3 23 31-53 16-38 (179)
390 1svi_A GTP-binding protein YSX 96.7 0.00062 2.1E-08 50.6 2.3 25 29-53 22-46 (195)
391 2wsm_A Hydrogenase expression/ 96.7 0.00092 3.1E-08 50.9 3.3 25 30-54 30-54 (221)
392 3con_A GTPase NRAS; structural 96.7 0.00095 3.2E-08 49.4 3.3 23 31-53 22-44 (190)
393 2g6b_A RAS-related protein RAB 96.7 0.00097 3.3E-08 48.7 3.3 23 31-53 11-33 (180)
394 3io5_A Recombination and repai 96.7 0.0015 5E-08 53.8 4.6 41 27-68 26-68 (333)
395 2i1q_A DNA repair and recombin 96.7 0.00078 2.7E-08 54.9 3.0 28 26-53 94-121 (322)
396 3lxw_A GTPase IMAP family memb 96.7 0.00075 2.6E-08 53.0 2.8 24 30-53 21-44 (247)
397 2dby_A GTP-binding protein; GD 96.7 0.00087 3E-08 56.1 3.3 22 32-53 3-24 (368)
398 2y8e_A RAB-protein 6, GH09086P 96.7 0.00089 3.1E-08 48.7 3.0 22 32-53 16-37 (179)
399 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.0012 4E-08 54.0 4.0 28 27-54 42-69 (322)
400 2hxs_A RAB-26, RAS-related pro 96.7 0.00088 3E-08 48.8 2.9 22 32-53 8-29 (178)
401 2chg_A Replication factor C sm 96.7 0.0011 3.9E-08 49.6 3.6 24 32-55 40-63 (226)
402 3pqc_A Probable GTP-binding pr 96.7 0.00067 2.3E-08 50.2 2.3 23 31-53 24-46 (195)
403 3tw8_B RAS-related protein RAB 96.7 0.00057 2E-08 49.8 1.9 22 32-53 11-32 (181)
404 1nrj_B SR-beta, signal recogni 96.7 0.00099 3.4E-08 50.5 3.3 24 31-54 13-36 (218)
405 2efe_B Small GTP-binding prote 96.7 0.0011 3.7E-08 48.5 3.3 22 32-53 14-35 (181)
406 3pvs_A Replication-associated 96.7 0.0004 1.4E-08 59.6 1.1 34 21-54 39-74 (447)
407 1fzq_A ADP-ribosylation factor 96.7 0.0005 1.7E-08 50.9 1.4 25 29-53 15-39 (181)
408 1tue_A Replication protein E1; 96.7 0.0012 4.1E-08 51.0 3.6 29 26-54 54-82 (212)
409 1vg8_A RAS-related protein RAB 96.7 0.0011 3.8E-08 49.6 3.3 23 31-53 9-31 (207)
410 2bme_A RAB4A, RAS-related prot 96.7 0.001 3.4E-08 48.9 3.0 23 31-53 11-33 (186)
411 2bov_A RAla, RAS-related prote 96.6 0.0011 3.8E-08 49.5 3.3 23 31-53 15-37 (206)
412 3ihw_A Centg3; RAS, centaurin, 96.6 0.0012 4E-08 49.1 3.3 23 31-53 21-43 (184)
413 1yrb_A ATP(GTP)binding protein 96.6 0.0031 1E-07 49.3 5.9 40 27-67 11-50 (262)
414 4b4t_H 26S protease regulatory 96.6 0.0042 1.5E-07 53.4 7.1 41 26-69 239-279 (467)
415 2gf9_A RAS-related protein RAB 96.6 0.0012 4E-08 49.0 3.3 23 31-53 23-45 (189)
416 2cxx_A Probable GTP-binding pr 96.6 0.00071 2.4E-08 49.9 2.1 22 32-53 3-24 (190)
417 1wf3_A GTP-binding protein; GT 96.6 0.00096 3.3E-08 54.2 3.0 22 32-53 9-30 (301)
418 3iev_A GTP-binding protein ERA 96.6 0.00097 3.3E-08 54.2 3.0 24 30-53 10-33 (308)
419 1m7b_A RND3/RHOE small GTP-bin 96.6 0.0011 3.7E-08 49.0 3.0 22 32-53 9-30 (184)
420 4b4t_I 26S protease regulatory 96.6 0.0058 2E-07 52.1 7.8 42 26-70 212-253 (437)
421 1ofh_A ATP-dependent HSL prote 96.6 0.0013 4.5E-08 52.5 3.7 26 29-54 49-74 (310)
422 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.0012 4.2E-08 48.3 3.3 22 32-53 7-28 (186)
423 3tkl_A RAS-related protein RAB 96.6 0.0012 4.1E-08 48.9 3.3 23 31-53 17-39 (196)
424 1g41_A Heat shock protein HSLU 96.6 0.0034 1.1E-07 53.8 6.4 34 32-68 52-85 (444)
425 3kkq_A RAS-related protein M-R 96.6 0.0012 4.3E-08 48.3 3.3 23 31-53 19-41 (183)
426 1d2n_A N-ethylmaleimide-sensit 96.6 0.0015 5.3E-08 51.6 4.0 28 27-54 61-88 (272)
427 2gf0_A GTP-binding protein DI- 96.6 0.0011 3.9E-08 49.2 3.0 23 31-53 9-31 (199)
428 3uk6_A RUVB-like 2; hexameric 96.6 0.0014 4.8E-08 53.9 3.8 27 28-54 68-94 (368)
429 2j37_W Signal recognition part 96.6 0.0026 8.9E-08 55.4 5.6 40 28-67 99-138 (504)
430 3tqf_A HPR(Ser) kinase; transf 96.6 0.0013 4.5E-08 49.5 3.3 25 28-52 14-38 (181)
431 2e87_A Hypothetical protein PH 96.6 0.00086 2.9E-08 55.6 2.5 26 28-53 165-190 (357)
432 3eph_A TRNA isopentenyltransfe 96.6 0.0014 4.8E-08 55.6 3.8 25 30-54 2-26 (409)
433 2bjv_A PSP operon transcriptio 96.6 0.0011 3.9E-08 52.1 3.1 39 27-65 26-64 (265)
434 2fg5_A RAB-22B, RAS-related pr 96.6 0.0012 4E-08 49.2 3.0 23 31-53 24-46 (192)
435 3eie_A Vacuolar protein sortin 96.6 0.0017 5.8E-08 52.9 4.2 27 28-54 49-75 (322)
436 3hws_A ATP-dependent CLP prote 96.6 0.0012 4.1E-08 54.6 3.3 26 29-54 50-75 (363)
437 1z06_A RAS-related protein RAB 96.6 0.0014 4.8E-08 48.5 3.3 23 31-53 21-43 (189)
438 3bgw_A DNAB-like replicative h 96.6 0.0024 8.3E-08 54.7 5.2 51 17-67 184-234 (444)
439 2fv8_A H6, RHO-related GTP-bin 96.6 0.0014 4.7E-08 49.5 3.3 35 19-53 14-48 (207)
440 3bwd_D RAC-like GTP-binding pr 96.6 0.0018 6.1E-08 47.3 3.8 23 30-52 8-30 (182)
441 2r44_A Uncharacterized protein 96.6 0.00041 1.4E-08 56.5 0.3 38 17-54 33-70 (331)
442 3iby_A Ferrous iron transport 96.5 0.001 3.4E-08 52.7 2.5 22 32-53 3-24 (256)
443 3oes_A GTPase rhebl1; small GT 96.5 0.0013 4.4E-08 49.4 3.0 27 28-54 22-48 (201)
444 2a5j_A RAS-related protein RAB 96.5 0.0015 5.1E-08 48.6 3.3 23 31-53 22-44 (191)
445 2xtp_A GTPase IMAP family memb 96.5 0.0011 3.6E-08 52.2 2.5 23 31-53 23-45 (260)
446 3t5g_A GTP-binding protein RHE 96.5 0.0014 4.6E-08 48.1 3.0 21 32-52 8-28 (181)
447 2atv_A RERG, RAS-like estrogen 96.5 0.0016 5.3E-08 48.6 3.3 24 30-53 28-51 (196)
448 1x3s_A RAS-related protein RAB 96.5 0.0016 5.3E-08 48.2 3.3 23 31-53 16-38 (195)
449 3dz8_A RAS-related protein RAB 96.5 0.0014 4.7E-08 48.7 3.0 24 31-54 24-47 (191)
450 1zd9_A ADP-ribosylation factor 96.5 0.0016 5.4E-08 48.4 3.3 24 30-53 22-45 (188)
451 2cjw_A GTP-binding protein GEM 96.5 0.0016 5.3E-08 48.8 3.3 22 32-53 8-29 (192)
452 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0013 4.4E-08 56.8 3.1 37 17-54 139-175 (473)
453 3reg_A RHO-like small GTPase; 96.5 0.0016 5.5E-08 48.4 3.3 23 31-53 24-46 (194)
454 2p5s_A RAS and EF-hand domain 96.5 0.0016 5.6E-08 48.7 3.3 27 27-53 25-51 (199)
455 2ew1_A RAS-related protein RAB 96.5 0.0014 5E-08 49.5 3.0 24 31-54 27-50 (201)
456 3cph_A RAS-related protein SEC 96.5 0.0016 5.6E-08 48.9 3.3 25 29-53 19-43 (213)
457 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0015 5E-08 49.1 3.0 22 32-53 10-31 (206)
458 1zbd_A Rabphilin-3A; G protein 96.5 0.0013 4.6E-08 49.1 2.8 22 32-53 10-31 (203)
459 3a1s_A Iron(II) transport prot 96.5 0.0014 4.7E-08 52.0 2.8 22 32-53 7-28 (258)
460 3d8b_A Fidgetin-like protein 1 96.5 0.002 7E-08 53.3 3.9 37 28-67 115-151 (357)
461 1ksh_A ARF-like protein 2; sma 96.4 0.0012 4.1E-08 48.7 2.2 25 28-52 16-40 (186)
462 2c9o_A RUVB-like 1; hexameric 96.4 0.0031 1.1E-07 54.0 5.0 41 26-67 59-99 (456)
463 2qp9_X Vacuolar protein sortin 96.4 0.002 6.9E-08 53.3 3.8 27 28-54 82-108 (355)
464 3c5c_A RAS-like protein 12; GD 96.4 0.002 6.8E-08 47.9 3.3 23 31-53 22-44 (187)
465 2iwr_A Centaurin gamma 1; ANK 96.4 0.0019 6.5E-08 47.1 3.2 23 31-53 8-30 (178)
466 3fdi_A Uncharacterized protein 96.4 0.002 6.7E-08 49.2 3.3 25 30-54 6-30 (201)
467 3i8s_A Ferrous iron transport 96.4 0.0014 4.7E-08 52.4 2.5 23 31-53 4-26 (274)
468 1gwn_A RHO-related GTP-binding 96.4 0.0017 6E-08 49.2 3.0 23 31-53 29-51 (205)
469 1moz_A ARL1, ADP-ribosylation 96.4 0.0014 4.6E-08 48.1 2.3 25 28-52 16-40 (183)
470 1zj6_A ADP-ribosylation factor 96.4 0.0015 5.1E-08 48.3 2.5 25 28-52 14-38 (187)
471 2hf9_A Probable hydrogenase ni 96.4 0.002 6.8E-08 49.2 3.2 26 29-54 37-62 (226)
472 2fh5_B SR-beta, signal recogni 96.4 0.0021 7E-08 48.6 3.3 23 31-53 8-30 (214)
473 3cbq_A GTP-binding protein REM 96.4 0.00092 3.2E-08 50.2 1.2 22 31-52 24-45 (195)
474 1um8_A ATP-dependent CLP prote 96.4 0.002 6.9E-08 53.4 3.4 26 29-54 71-96 (376)
475 1jr3_A DNA polymerase III subu 96.3 0.00093 3.2E-08 54.9 1.2 23 32-54 40-62 (373)
476 3t5d_A Septin-7; GTP-binding p 96.3 0.0011 3.9E-08 52.7 1.6 21 32-52 10-30 (274)
477 2o52_A RAS-related protein RAB 96.3 0.0015 5.1E-08 49.1 2.2 23 31-53 26-48 (200)
478 2gco_A H9, RHO-related GTP-bin 96.3 0.0021 7E-08 48.3 3.0 22 32-53 27-48 (201)
479 2h17_A ADP-ribosylation factor 96.3 0.0014 4.9E-08 48.2 2.0 24 30-53 21-44 (181)
480 1jwy_B Dynamin A GTPase domain 96.3 0.0018 6.1E-08 52.2 2.7 23 31-53 25-47 (315)
481 1xx6_A Thymidine kinase; NESG, 96.3 0.0064 2.2E-07 46.1 5.6 37 28-64 6-42 (191)
482 2f7s_A C25KG, RAS-related prot 96.3 0.0018 6.2E-08 49.0 2.6 22 31-52 26-47 (217)
483 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.002 6.7E-08 53.1 2.9 29 25-53 118-146 (331)
484 2fu5_C RAS-related protein RAB 96.3 0.0013 4.4E-08 48.3 1.6 23 31-53 9-31 (183)
485 2atx_A Small GTP binding prote 96.3 0.0023 7.8E-08 47.5 3.0 22 32-53 20-41 (194)
486 2il1_A RAB12; G-protein, GDP, 96.3 0.0013 4.6E-08 49.0 1.7 22 32-53 28-49 (192)
487 4dhe_A Probable GTP-binding pr 96.3 0.00084 2.9E-08 51.1 0.6 24 30-53 29-52 (223)
488 3pfi_A Holliday junction ATP-d 96.3 0.0023 8E-08 52.0 3.3 24 31-54 56-79 (338)
489 2qu8_A Putative nucleolar GTP- 96.3 0.0017 5.7E-08 49.9 2.2 24 30-53 29-52 (228)
490 2q3h_A RAS homolog gene family 96.2 0.002 6.8E-08 48.1 2.5 26 28-53 18-43 (201)
491 4bas_A ADP-ribosylation factor 96.2 0.0016 5.4E-08 48.4 1.9 25 29-53 16-40 (199)
492 1q57_A DNA primase/helicase; d 96.2 0.0039 1.3E-07 53.9 4.6 50 18-67 230-280 (503)
493 2h57_A ADP-ribosylation factor 96.2 0.0012 4E-08 49.0 1.0 25 30-54 21-45 (190)
494 3co5_A Putative two-component 96.2 0.0012 3.9E-08 47.5 0.9 26 28-53 25-50 (143)
495 2hup_A RAS-related protein RAB 96.2 0.0027 9.2E-08 47.7 3.0 23 31-53 30-52 (201)
496 2j1l_A RHO-related GTP-binding 96.2 0.002 6.7E-08 49.0 2.3 23 31-53 35-57 (214)
497 3cf2_A TER ATPase, transitiona 96.2 0.0074 2.5E-07 55.4 6.4 38 26-66 234-271 (806)
498 3llu_A RAS-related GTP-binding 96.2 0.0021 7E-08 48.1 2.3 23 31-53 21-43 (196)
499 2aka_B Dynamin-1; fusion prote 96.2 0.002 6.8E-08 51.4 2.3 23 31-53 27-49 (299)
500 3cpj_B GTP-binding protein YPT 96.2 0.0032 1.1E-07 48.1 3.3 23 31-53 14-36 (223)
No 1
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.4e-35 Score=231.67 Aligned_cols=153 Identities=24% Similarity=0.223 Sum_probs=120.9
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------c
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------L 73 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------~ 73 (190)
|.+|++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... .
T Consensus 1 m~~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 1 MAEILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD-APTEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS-CCSEEEEEETTEECCSSCHHHHHHH
T ss_pred CCcEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHHH
Confidence 677899999999999888999999999999999999999999999999999977 78899999999876321 1
Q ss_pred c-cccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613 74 N-KNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 74 ~-~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~ 127 (190)
+ ..++|.+++ ..+++.. ...+..++...++.. .+..||+||+|| .+||+++.+|
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1 223333322 2222211 112344556666543 377899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+++.+++.
T Consensus 160 ~ll--lLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 160 ILL--FADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp SEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999888764
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.9e-35 Score=244.59 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=119.1
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc----c--ccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR----H--GLN 74 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~----~--~~~ 74 (190)
|+++|+++|++++|++..+++++||++++||+++|+||||||||||+|+|+|++ ++.+|.|.++|.++. . ..+
T Consensus 1 M~~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 1 MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE-QPDSGEISLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEESSSCBCCGGG
T ss_pred CCcEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEECcccccccchhh
Confidence 666899999999999999999999999999999999999999999999999977 789999999998772 1 112
Q ss_pred cccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 75 KNLGFSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 75 ~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
..++|.+|+ ..+++.. -..+..++...++. ..+..|||||||| ++|||++.+|++
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l 159 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL 159 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 334444443 2222211 11233444555554 3488899999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+ +|||||++||+..+..+.+.+.+
T Consensus 160 L--LLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 160 I--LLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp E--EEESTTTTSCHHHHHHHHHHHHH
T ss_pred E--EEeCCcccCCHHHHHHHHHHHHH
Confidence 9 99999999999999888865543
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-34 Score=234.63 Aligned_cols=153 Identities=20% Similarity=0.221 Sum_probs=120.2
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---c---ccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---H---GLN 74 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---~---~~~ 74 (190)
|.+||+++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++. . ..+
T Consensus 21 m~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 21 MLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-DFDEGEIIIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp -CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEESSSTTCCHHHHH
T ss_pred chheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC-CCCCcEEEECCEECCCccccHHHHh
Confidence 445799999999999888999999999999999999999999999999999987 788999999997763 0 112
Q ss_pred cccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCC
Q 029613 75 KNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 75 ~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~ 128 (190)
..++|.+++ ..+++.. ...+..++...++.. .+..||+||+|| .+||+++.+|+
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ 179 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK 179 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence 223333322 2222211 112344556666643 377899999999 69999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ +|||||++||+..++.+.+.+++.
T Consensus 180 ll--lLDEPts~LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 180 IM--LFDEPTSALDPEMVGEVLSVMKQL 205 (263)
T ss_dssp EE--EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred EE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 99 999999999999999999888764
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3e-34 Score=233.80 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=119.3
Q ss_pred cccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------cccc
Q 029613 3 TVGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNK 75 (190)
Q Consensus 3 ~~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~ 75 (190)
+||+++|++++|++ ..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. ..+.
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL-KPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeEEEECCEECCcccccHHHHhC
Confidence 37999999999975 45999999999999999999999999999999999977 7889999999987621 1222
Q ss_pred ccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613 76 NLGFSAED---------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 76 ~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i 129 (190)
.++|.+++ ..+++.. ...+..++...++.. .+..||+||||| ++|||++.+|++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l 164 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 34443332 1222211 112344555666643 378899999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+..++.+++.+++.
T Consensus 165 L--lLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 165 L--ILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp E--EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred E--EEECccccCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999888764
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4e-34 Score=231.60 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=119.4
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----------
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----------- 71 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----------- 71 (190)
+|++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccccccccccccc
Confidence 3799999999999888999999999999999999999999999999999977 7889999999977641
Q ss_pred ------ccccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce-----eecccCccHHHH-H
Q 029613 72 ------GLNKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC-----IASLISPYRKDR-D 118 (190)
Q Consensus 72 ------~~~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~ 118 (190)
..+..++|.+++ ..+++.. -..+..++..+++.. .+..||+||+|| +
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 112223333322 2222221 112334555566533 367899999999 6
Q ss_pred HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||++.+|+++ +|||||++||+..++.+.+.+++-
T Consensus 164 lAraL~~~p~ll--lLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 164 IARALAMEPDVL--LFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp HHHHHHTCCSEE--EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999888764
No 6
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.5e-34 Score=228.96 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=119.0
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~ 80 (190)
+|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... .+..++|.
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCccHHHHhhcEEEE
Confidence 789999999999889999999999999999999999999999999999977 78899999999776321 12223333
Q ss_pred hhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 81 AED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 81 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
+++ ..+++... ..+..++...++.. .+..||+||+|| .+||+++.+|+++ +||
T Consensus 94 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll--lLD 171 (256)
T 1vpl_A 94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA--ILD 171 (256)
T ss_dssp CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE--EEE
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEe
Confidence 332 22222211 12334455555543 377899999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcC
Q 029613 136 MPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||++||+..++.+++.+++-
T Consensus 172 EPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 172 EPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp STTTTCCHHHHHHHHHHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHH
Confidence 999999999999999888764
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.1e-34 Score=239.50 Aligned_cols=152 Identities=22% Similarity=0.222 Sum_probs=119.9
Q ss_pred CcccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----
Q 029613 2 ATVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----- 72 (190)
Q Consensus 2 ~~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----- 72 (190)
.+||+++|++++|+. ..+|+++||++++|++++|+||||||||||+|+|+|++ ++.+|+|.++|.++...
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECSSCCHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHH
Confidence 358999999999953 56999999999999999999999999999999999977 78999999999876421
Q ss_pred --cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCC
Q 029613 73 --LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLP 125 (190)
Q Consensus 73 --~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~ 125 (190)
.+..++|.+|+ ..+++.. -..+..++...++. ..+..|||||||| +|||||+.
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 12334444432 2222211 11234455555654 3478899999999 69999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|+++ +|||||++||+..++.+++.+++.
T Consensus 181 ~P~lL--LlDEPTs~LD~~~~~~i~~lL~~l 209 (366)
T 3tui_C 181 NPKVL--LCDQATSALDPATTRSILELLKDI 209 (366)
T ss_dssp CCSEE--EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCEE--EEECCCccCCHHHHHHHHHHHHHH
Confidence 99999 999999999999999999888763
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.7e-34 Score=240.96 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=119.8
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccC
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLG 78 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~ 78 (190)
|. +|+++|++|+|++..+|+++||++++||+++|+||||||||||+|+|+|++ ++.+|.|.++|+++... ....++
T Consensus 1 M~-~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 1 MA-SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp -C-CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSCEE
T ss_pred CC-EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC-CCCCeEEEECCEECCCCCHHHCCEE
Confidence 54 689999999999999999999999999999999999999999999999977 78999999999876431 122234
Q ss_pred CChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 79 FSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
|..|+ ..+++.. -..+..++...++. ..+..|||||||| +||||++.+|+++ +
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL--L 156 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF--L 156 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE--E
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEE--E
Confidence 43332 2222211 11234455555554 3488899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHc
Q 029613 134 MNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~ 155 (190)
|||||++||+..++.+.+.+++
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHH
T ss_pred EECCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999988888876
No 9
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-33 Score=221.33 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=118.0
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE 82 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~ 82 (190)
.+|+++|++++|++ ++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++. ..+..++|.++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~-~~~~~i~~v~q 85 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPIT-KVKGKIFFLPE 85 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGG-GGGGGEEEECS
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEhh-hhcCcEEEEeC
Confidence 37899999999988 9999999999999999999999999999999999977 788999999997763 22222333322
Q ss_pred h--------HHHHHHHH----------HHHHHHHHHcCcc---eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613 83 D--------RTENIRRV----------GEVAKLFADAGLI---CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL 140 (190)
Q Consensus 83 ~--------~~~~~~~~----------~~~~~~~~~~~~~---~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ 140 (190)
+ ..+++... ..+..++..+++. ..+..||+||+|| .+||+++.+|+++ +|||||++
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll--lLDEPts~ 163 (214)
T 1sgw_A 86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY--VLDDPVVA 163 (214)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE--EEESTTTT
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE--EEECCCcC
Confidence 1 22332211 1233445555553 3467799999999 6999999999999 99999999
Q ss_pred hhhcChHHHHHHHHcC
Q 029613 141 CEARDPKGLYKLARAG 156 (190)
Q Consensus 141 ld~~~~~~~~~~~~~~ 156 (190)
||+..++.+.+.+++-
T Consensus 164 LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 164 IDEDSKHKVLKSILEI 179 (214)
T ss_dssp SCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888763
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.5e-33 Score=224.92 Aligned_cols=150 Identities=19% Similarity=0.154 Sum_probs=117.0
Q ss_pred ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613 4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------- 72 (190)
|++++|++++|+. ..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|+|.++|.++...
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHH
Confidence 4789999999973 46999999999999999999999999999999999977 78999999999775321
Q ss_pred -cccccCCChhh--------HHHHHHH---------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHH
Q 029613 73 -LNKNLGFSAED--------RTENIRR---------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRA 122 (190)
Q Consensus 73 -~~~~i~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iara 122 (190)
.+..++|.+++ ..+++.. ...+..++...++. ..+..||+||+|| ++|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 01123333332 2222211 12234455555553 2478899999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++.+|+++ +|||||++||+...+.+.+.+++.
T Consensus 160 l~~~p~ll--llDEPts~LD~~~~~~i~~~l~~l 191 (235)
T 3tif_A 160 LANNPPII--LADQPTWALDSKTGEKIMQLLKKL 191 (235)
T ss_dssp HTTCCSEE--EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999888764
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.4e-33 Score=227.70 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=119.0
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i 77 (190)
+|++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... .+..+
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4799999999999889999999999999999999999999999999999987 78899999999776321 11223
Q ss_pred CCChhh--------HHHHHHH-------------------------HHHHHHHHHHcCcce----eecccCccHHHH-HH
Q 029613 78 GFSAED--------RTENIRR-------------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DA 119 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~-------------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~i 119 (190)
+|.+++ ..+++.. ...+..++...++.. .+..||+||||| ++
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i 164 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 164 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence 333332 1121110 112334555556543 377899999999 69
Q ss_pred HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
||+++.+|+++ +|||||++||+..++.+++.+++.
T Consensus 165 AraL~~~p~ll--lLDEPts~LD~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 165 GRALMTNPKMI--VMDEPIAGVAPGLAHDIFNHVLEL 199 (257)
T ss_dssp HHHHHTCCSEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEE--EEeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999988764
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.4e-33 Score=235.61 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=121.0
Q ss_pred CCcccccCcceeccCccc--cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613 1 MATVGNSTNIFWQESPIG--RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~--~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------- 71 (190)
|+ ||+++|++++|++.+ +++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..
T Consensus 1 M~-~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 1 MV-RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp CC-CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSC
T ss_pred Cc-EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECcccccccCC
Confidence 54 789999999999888 999999999999999999999999999999999977 7889999999987632
Q ss_pred ccccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613 72 GLNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 72 ~~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~ 126 (190)
..+..++|.+++ ..+++.. -..+..++...++.. .+..||+||+|| ++|||++.+
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 112234444332 2222211 123344555566543 478899999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||+..++.+.+.+++.
T Consensus 159 P~lL--LLDEP~s~LD~~~r~~l~~~l~~l 186 (353)
T 1oxx_K 159 PSLL--LLDEPFSNLDARMRDSARALVKEV 186 (353)
T ss_dssp CSEE--EEESTTTTSCGGGHHHHHHHHHHH
T ss_pred CCEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence 9999 999999999999999999888753
No 13
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.98 E-value=2.3e-33 Score=229.03 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=118.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc--c----cccccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR--H----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~--~----~~~~~i 77 (190)
|++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++. . ..+..+
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE-PATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 689999999999888999999999999999999999999999999999987 788999999997764 1 112233
Q ss_pred CCChhh----------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613 78 GFSAED----------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 78 ~~~~~~----------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~ 126 (190)
+|.+++ ..+++.. ...+..++...++.. .+..||+||||| ++|||++.+
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~ 179 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ 179 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence 443332 1122110 112334555566543 377899999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|+++ +|||||++||+..++.+++.+++.
T Consensus 180 p~lL--lLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 180 PQVL--ILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp CSEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCEE--EEeCCccccCHHHHHHHHHHHHHH
Confidence 9999 999999999999999999888764
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.98 E-value=3.6e-33 Score=234.85 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=119.3
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccC
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLG 78 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~ 78 (190)
|+ +++++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. .....++
T Consensus 1 M~-~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig 78 (359)
T 2yyz_A 1 MP-SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-KPTSGEIYFDDVLVNDIPPKYREVG 78 (359)
T ss_dssp -C-CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEE
T ss_pred Cc-EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC-CCCccEEEECCEECCCCChhhCcEE
Confidence 54 689999999999889999999999999999999999999999999999977 7889999999987642 1112233
Q ss_pred CChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 79 FSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
|.+++ ..+++.. -..+..++...++.. .+..||+||+|| ++|||++.+|+++ +
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lL--L 156 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVL--L 156 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE--E
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--E
Confidence 33332 2232211 012344555566543 478899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHc
Q 029613 134 MNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~ 155 (190)
|||||++||+..++.+.+.+++
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 157 FDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999998888765
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.98 E-value=6.2e-33 Score=232.98 Aligned_cols=150 Identities=17% Similarity=0.186 Sum_probs=120.2
Q ss_pred cccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCC
Q 029613 3 TVGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGF 79 (190)
Q Consensus 3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~ 79 (190)
++|+++|++++| ++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. ..+..++|
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE-RPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECCcCChhhCcEEE
Confidence 478999999999 8888999999999999999999999999999999999977 7899999999987642 11223444
Q ss_pred Chhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613 80 SAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM 134 (190)
Q Consensus 80 ~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll 134 (190)
.+++ ..+++.. -..+..++...++.. .+..||+||+|| ++|||++.+|+++ +|
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL--LL 169 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL--LF 169 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE--EE
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE--EE
Confidence 4433 2233221 112344555666543 478899999999 6999999999999 99
Q ss_pred eCCchhhhhcChHHHHHHHHc
Q 029613 135 NMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 135 DEP~~~ld~~~~~~~~~~~~~ 155 (190)
||||++||+..++.+.+.+++
T Consensus 170 DEP~s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 170 DEPFAAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp ESTTCCSSHHHHHHHHHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHH
Confidence 999999999999998888775
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.98 E-value=4.4e-33 Score=234.49 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=120.7
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccC
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLG 78 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~ 78 (190)
|+ +++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. .....++
T Consensus 1 m~-~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig 78 (362)
T 2it1_A 1 MV-EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY-KPTSGKIYFDEKDVTELPPKDRNVG 78 (362)
T ss_dssp CC-CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEE
T ss_pred Cc-EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHhHCcEE
Confidence 54 689999999999888999999999999999999999999999999999977 7889999999987642 1122334
Q ss_pred CChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613 79 FSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF 133 (190)
Q Consensus 79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl 133 (190)
|.+++ ..+++.. -..+.+++...++.. .+..||+||+|| ++|||++.+|+++ +
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL--L 156 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVL--L 156 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEE--E
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEE--E
Confidence 43332 2233221 112344555566543 478899999999 6999999999999 9
Q ss_pred eeCCchhhhhcChHHHHHHHHcC
Q 029613 134 MNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 134 lDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||||++||+..++.+.+.+++.
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 157 LDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp EESGGGGSCHHHHHHHHHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999988888753
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.98 E-value=1.3e-33 Score=229.14 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=117.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----cccccCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNLGF 79 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i~~ 79 (190)
|++++|++++|++.++|+++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... ....++|
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS-CCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 689999999999999999999999999999999999999999999999977 78899999999876421 1111121
Q ss_pred Chh--------hHHHHHHH----------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCC------CCCeE
Q 029613 80 SAE--------DRTENIRR----------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLP------DSNFI 130 (190)
Q Consensus 80 ~~~--------~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~------~~~il 130 (190)
.++ ...+++.. ...+..++...++. ..+..||+||+|| .+|||++. +|+++
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lL 169 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWL 169 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEE
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 111 12222211 11233445555543 2477899999999 69999999 99999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..+..+++.+++.
T Consensus 170 --llDEPts~LD~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 170 --FLDEPTSALDLYHQQHTLRLLRQL 193 (266)
T ss_dssp --EECCCCSSCCHHHHHHHHHHHHHH
T ss_pred --EEeCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.98 E-value=3e-33 Score=223.76 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=116.5
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL 77 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i 77 (190)
+|++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... .+..+
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCCHHHHHhCCE
Confidence 3799999999999888999999999999999999999999999999999977 78899999999776321 11123
Q ss_pred CCChhh--------HHHHHHH-----------HHHHHHHHHHcC-c----ceeecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 78 GFSAED--------RTENIRR-----------VGEVAKLFADAG-L----ICIASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 78 ~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~-~----~~~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
+|.+++ ..+++.. ...+..++..++ + ...+..||+||+|| .+||+++.+|+++
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll-- 161 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL-- 161 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE--
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--
Confidence 333321 1222211 011222333332 3 23477899999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+++.+++-
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~ 185 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=4.5e-33 Score=235.35 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=119.7
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------c
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------G 72 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~ 72 (190)
|+ ||+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. .
T Consensus 1 M~-~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 1 MA-GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp CE-EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEEEGGGTEECCG
T ss_pred CC-EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC-CCCccEEEECCEECccccccccCCH
Confidence 54 689999999999889999999999999999999999999999999999977 7889999999987643 1
Q ss_pred cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCC
Q 029613 73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~ 127 (190)
....++|.+++ ..+++.. -..+..++...++. ..+..||+||+|| ++|||++.+|
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 12234443332 2232221 01233445555553 3478899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+++ +|||||++||+..++.+.+.+++
T Consensus 159 ~lL--LLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 159 QVF--LMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp SEE--EEECTTTTSCHHHHHHHHHHHHH
T ss_pred CEE--EECCCCccCCHHHHHHHHHHHHH
Confidence 999 99999999999999988888765
No 20
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=6.9e-33 Score=234.07 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=118.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~ 81 (190)
+++++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. .....++|.+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECCCCChhhCcEEEEe
Confidence 589999999999888999999999999999999999999999999999977 7899999999987642 1122344444
Q ss_pred hh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613 82 ED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM 136 (190)
Q Consensus 82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE 136 (190)
++ ..+++.. -..+..++...++.. .+..||+||+|| ++|||++.+|+++ +|||
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL--LLDE 167 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL--LMDE 167 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE--EEES
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcC
Confidence 33 1222211 112344555566543 478899999999 6999999999999 9999
Q ss_pred CchhhhhcChHHHHHHHHc
Q 029613 137 PLELCEARDPKGLYKLARA 155 (190)
Q Consensus 137 P~~~ld~~~~~~~~~~~~~ 155 (190)
||++||+..++.+.+.+++
T Consensus 168 P~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHH
Confidence 9999999999998888875
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=8.9e-33 Score=231.64 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=118.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~ 81 (190)
|++++|++++|++. +++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. ..+..++|.+
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC-CCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 47899999999888 999999999999999999999999999999999977 7899999999987642 1122344443
Q ss_pred hh--------HHHHHHHH---------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 82 ED--------RTENIRRV---------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 82 ~~--------~~~~~~~~---------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
++ ..+++... ..+..++...++. ..+..||+||+|| ++|||++.+|+++ +|||||+
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lL--LLDEP~s 156 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL--LLDEPLS 156 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE--EEESSST
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEECccc
Confidence 32 23333221 2344455556554 3478899999999 6999999999999 9999999
Q ss_pred hhhhcChHHHHHHHHc
Q 029613 140 LCEARDPKGLYKLARA 155 (190)
Q Consensus 140 ~ld~~~~~~~~~~~~~ 155 (190)
+||+..++.+.+.+++
T Consensus 157 ~LD~~~~~~l~~~l~~ 172 (348)
T 3d31_A 157 ALDPRTQENAREMLSV 172 (348)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999998888875
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=7.2e-33 Score=222.76 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=115.7
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc-----cc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG-----LN 74 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~-----~~ 74 (190)
|+ |++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ .++.+|.|.++|.++... .+
T Consensus 1 M~-~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 1 MS-QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp -C-EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred Cc-eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 54 789999999999888999999999999999999999999999999999972 267899999999876321 11
Q ss_pred cccCCChhh--------HHHHHHH---------------HHHHHHHHHHcCc-ce----eecc-cCccHHHH-HHHHHhC
Q 029613 75 KNLGFSAED--------RTENIRR---------------VGEVAKLFADAGL-IC----IASL-ISPYRKDR-DACRAML 124 (190)
Q Consensus 75 ~~i~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~-~~----~~~~-lS~g~kqr-~iarall 124 (190)
..++|.+++ ..+++.. ...+..++...++ .. .+.. ||+||+|| .+||+++
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~ 159 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV 159 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 223443332 1122211 1123344455555 22 3566 99999999 6999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
.+|+++ +|||||++||+..++.+.+.+++....|
T Consensus 160 ~~p~ll--lLDEPts~LD~~~~~~l~~~l~~l~~~g 193 (250)
T 2d2e_A 160 LEPTYA--VLDETDSGLDIDALKVVARGVNAMRGPN 193 (250)
T ss_dssp HCCSEE--EEECGGGTTCHHHHHHHHHHHHHHCSTT
T ss_pred cCCCEE--EEeCCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 999999 9999999999999999999998753334
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=3.5e-32 Score=217.60 Aligned_cols=147 Identities=15% Similarity=0.149 Sum_probs=115.8
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA 81 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~ 81 (190)
|++++|++++|+. +++++||++++ ++++|+||||||||||+|+|+|++ +|.+|.|.++|.++.. ..+..++|.+
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCchhhCcEEEEc
Confidence 4789999999976 49999999999 999999999999999999999987 7889999999977632 1222344444
Q ss_pred hh--------HHHHHHH----------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 82 ED--------RTENIRR----------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 82 ~~--------~~~~~~~----------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
++ ..+++.. -..+..++...++.. .+..||+||+|| .+||+++.+|+++ +|||||
T Consensus 77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll--lLDEPt 154 (240)
T 2onk_A 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL--LLDEPL 154 (240)
T ss_dssp SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB--EEESTT
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEeCCc
Confidence 32 1222211 122344555566533 477899999999 6999999999999 999999
Q ss_pred hhhhhcChHHHHHHHHcC
Q 029613 139 ELCEARDPKGLYKLARAG 156 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~~ 156 (190)
++||+..++.+++.+++.
T Consensus 155 s~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999888753
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=3.1e-32 Score=220.96 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=117.4
Q ss_pred ccccCcceeccC--c---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-cccccc
Q 029613 4 VGNSTNIFWQES--P---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~--~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-~~~~~i 77 (190)
|++++|++++|+ . +++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. ..+..+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-EPTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEECchHHhhhhE
Confidence 689999999997 4 57999999999999999999999999999999999977 7889999999976532 111222
Q ss_pred CCChhh---------HHHHHHH-----------HHHHHHHHHHcCcc--e----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 78 GFSAED---------RTENIRR-----------VGEVAKLFADAGLI--C----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 78 ~~~~~~---------~~~~~~~-----------~~~~~~~~~~~~~~--~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
+|.+++ ..+++.. ...+..++...++. . .+..||+||+|| .+||+++.+|+++
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 332221 2222221 01234455556654 3 377899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+.+.+++-
T Consensus 161 --lLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 161 --ILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp --EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred --EEcCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=2.9e-32 Score=221.71 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=115.9
Q ss_pred cccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----ccc
Q 029613 3 TVGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNK 75 (190)
Q Consensus 3 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~ 75 (190)
.||+++|++++|++ ..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++... .+.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-QPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEcccCCHHHHhc
Confidence 37899999999986 78999999999999999999999999999999999977 78899999999876321 111
Q ss_pred ccCCChhh-------HHHHHHH----------H------HHHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCC
Q 029613 76 NLGFSAED-------RTENIRR----------V------GEVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLP 125 (190)
Q Consensus 76 ~i~~~~~~-------~~~~~~~----------~------~~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~ 125 (190)
.++|.+++ ..+++.. + ..+..++... ++. ..+..||+||+|| .+||+++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 22332221 2222211 0 0112233333 232 3367899999999 69999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|+++ +|||||++||+..++.+.+.+++.
T Consensus 174 ~p~ll--lLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 174 KPRLL--ILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp CCSEE--EEESTTTTCCHHHHHHHHHHHHHC
T ss_pred CCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999875
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=2.3e-32 Score=220.26 Aligned_cols=149 Identities=12% Similarity=0.045 Sum_probs=111.0
Q ss_pred CCcccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------
Q 029613 1 MATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------- 71 (190)
Q Consensus 1 m~~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------- 71 (190)
|++|++++|++++|+ +..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.+.. .+..
T Consensus 1 M~~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~~-~i~~v~q~~~~~ 78 (253)
T 2nq2_C 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH-RPIQGKIEVYQ-SIGFVPQFFSSP 78 (253)
T ss_dssp -CEEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS-CCSEEEEEECS-CEEEECSCCCCS
T ss_pred CCceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEec-cEEEEcCCCccC
Confidence 667899999999998 888999999999999999999999999999999999987 78889886421 1100
Q ss_pred ---ccccccCCChh--------hHHHHHHHHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613 72 ---GLNKNLGFSAE--------DRTENIRRVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN 135 (190)
Q Consensus 72 ---~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD 135 (190)
....++.+... ...+.. ..+..++...++.. .+..||+||+|| .+||+++.+|+++ +||
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll--lLD 153 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDY---QVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLI--LLD 153 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHH---HHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEE--EES
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHH---HHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEe
Confidence 00000000000 000001 12333445555533 377899999999 6999999999999 999
Q ss_pred CCchhhhhcChHHHHHHHHcC
Q 029613 136 MPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 136 EP~~~ld~~~~~~~~~~~~~~ 156 (190)
|||++||+..++.+.+.+++-
T Consensus 154 EPts~LD~~~~~~l~~~l~~l 174 (253)
T 2nq2_C 154 EPTSALDLANQDIVLSLLIDL 174 (253)
T ss_dssp SSSTTSCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999888763
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=1.3e-32 Score=220.44 Aligned_cols=150 Identities=16% Similarity=0.181 Sum_probs=114.2
Q ss_pred ccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 4 VGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
|++++|++++| ++.++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 47899999999 6678999999999999999999999999999999999977 7889999999976532 1122334
Q ss_pred CChhh-------HHHHHHH-------HHHHHHHHHHcCcce---------------eecccCccHHHH-HHHHHhCCCCC
Q 029613 79 FSAED-------RTENIRR-------VGEVAKLFADAGLIC---------------IASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 79 ~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~~---------------~~~~lS~g~kqr-~iarall~~~~ 128 (190)
|.+++ ..+++.. -..+...+...++.. .+..||+||+|| .+||+++.+|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 33332 2222211 011222222222211 246799999999 69999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ +|||||++||+..++.+.+.+++-
T Consensus 160 ll--lLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 160 IL--MLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp EE--EEECCSCSSCSSSCCHHHHHHHHH
T ss_pred EE--EEECCcccCCHHHHHHHHHHHHHh
Confidence 99 999999999999999999988764
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=5e-32 Score=219.84 Aligned_cols=157 Identities=14% Similarity=0.018 Sum_probs=118.7
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc----c-ccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG----L-NKN 76 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~----~-~~~ 76 (190)
+|++++|++++|+++++++++||++++|++++|+||||||||||+|+|+|++ .++.+|.|.++|.++... . +..
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 3789999999999889999999999999999999999999999999999974 257789999999876321 0 111
Q ss_pred cCCChhh--------HHHHHHH-------------------HHHHHHHHHHcCcc-e----eec-ccCccHHHH-HHHHH
Q 029613 77 LGFSAED--------RTENIRR-------------------VGEVAKLFADAGLI-C----IAS-LISPYRKDR-DACRA 122 (190)
Q Consensus 77 i~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~-~----~~~-~lS~g~kqr-~iara 122 (190)
++|.+++ ..+++.. ...+..++...++. . .+. .||+||||| ++|||
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAra 178 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 178 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 2332221 1111110 11233455555553 1 244 499999999 69999
Q ss_pred hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGL 161 (190)
Q Consensus 123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~ 161 (190)
++.+|+++ +|||||++||+..++.+.+.+++...+|.
T Consensus 179 L~~~p~lL--lLDEPts~LD~~~~~~l~~~l~~l~~~g~ 215 (267)
T 2zu0_C 179 AVLEPELC--ILDESDSGLDIDALKVVADGVNSLRDGKR 215 (267)
T ss_dssp HHHCCSEE--EEESTTTTCCHHHHHHHHHHHHTTCCSSC
T ss_pred HHhCCCEE--EEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999 99999999999999999999987644443
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=2.8e-32 Score=219.05 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=112.0
Q ss_pred cccCcceecc--CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 5 GNSTNIFWQE--SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 5 l~~~~l~~~~--~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
++++|++++| +...+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. ..+..++
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 6789999999 4678999999999999999999999999999999999977 7889999999977532 1112223
Q ss_pred CChhh-------HHHHHHH------HHHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIRR------VGEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
|.+++ ..+++.. ...+...+...++. ..+..||+||+|| ++||+++.+|++
T Consensus 87 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l 166 (247)
T 2ff7_A 87 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 166 (247)
T ss_dssp EECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 32221 2222211 01111222222221 1246799999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+..++.+.+.+++-
T Consensus 167 l--lLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 167 L--IFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp E--EECCCCSCCCHHHHHHHHHHHHHH
T ss_pred E--EEeCCcccCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999988764
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=4.1e-32 Score=218.32 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=114.8
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
|++|++++|++++ ++++++||++++|++++|+||||||||||+|+|+|++ ++. |.|.++|.++.. ..+..
T Consensus 1 M~~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~-G~i~~~g~~~~~~~~~~~~~~ 74 (249)
T 2qi9_C 1 MSIVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGK-GSIQFAGQPLEAWSATKLALH 74 (249)
T ss_dssp -CEEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCE-EEEEETTEEGGGSCHHHHHHH
T ss_pred CCcEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCC-eEEEECCEECCcCCHHHHhce
Confidence 6778999999988 6999999999999999999999999999999999987 677 999999987632 11112
Q ss_pred cCCChhh--------HHHHHHH-------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCC-------e
Q 029613 77 LGFSAED--------RTENIRR-------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSN-------F 129 (190)
Q Consensus 77 i~~~~~~--------~~~~~~~-------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~-------i 129 (190)
++|.+++ ..+++.. ...+..++...++.. .+..||+||+|| .+||+++.+|+ +
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp EEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred EEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 2322221 2233221 122344555556543 377899999999 69999999999 9
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+..++.+.+.+++-
T Consensus 155 l--lLDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 155 L--LLDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp E--EESSTTTTCCHHHHHHHHHHHHHH
T ss_pred E--EEECCcccCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999888764
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=5.8e-32 Score=223.21 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=113.8
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~ 78 (190)
.|+++|++++|+ +..+|+++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .++..++
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-DISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-CCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCcEEEECCEEcccCCHHHHhcceE
Confidence 478999999995 578999999999999999999999999999999999977 7899999999987643 1223344
Q ss_pred CChhh-------HHHHHHH---------HHHH------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613 79 FSAED-------RTENIRR---------VGEV------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 79 ~~~~~-------~~~~~~~---------~~~~------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i 129 (190)
|.+++ ..+++.. +... ...+... ++. ..+..|||||||| +||||++.+|++
T Consensus 132 ~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 132 VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 44332 2222211 1111 1111111 221 1246799999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+...+.+.+.+++.
T Consensus 212 L--lLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 212 I--LLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp E--EEECCSSCCCHHHHHHHHHHHHHH
T ss_pred E--EEECCcccCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999888763
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=4.3e-31 Score=213.91 Aligned_cols=149 Identities=17% Similarity=0.065 Sum_probs=119.0
Q ss_pred ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccC
Q 029613 4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~ 78 (190)
|++++|++++|++ ..+++++||+++ |++++|+||||||||||+|+|+|++ |.+|.|.++|.++... .+..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheE
Confidence 4789999999987 789999999999 9999999999999999999999966 7899999999766421 122355
Q ss_pred -CChhh------HHHHHHHH--------HHHHHHHHHcCcc-e----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 79 -FSAED------RTENIRRV--------GEVAKLFADAGLI-C----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 79 -~~~~~------~~~~~~~~--------~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
|.+++ ..+++... ..+..++...++. . .+..||+||+|| .+||+++.+|+++ +||||
T Consensus 78 ~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll--lLDEP 155 (263)
T 2pjz_A 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIV--GLDEP 155 (263)
T ss_dssp ECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEE--EEECT
T ss_pred EEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEECC
Confidence 55543 23333221 1234455556654 3 377899999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHHcCC
Q 029613 138 LELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~~~~ 157 (190)
|++||+..++.+++.+++-.
T Consensus 156 ts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 156 FENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp TTTCCHHHHHHHHHHHHHSC
T ss_pred ccccCHHHHHHHHHHHHHhc
Confidence 99999999999999998753
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.97 E-value=3.5e-31 Score=210.35 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=107.0
Q ss_pred CCcccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccC
Q 029613 1 MATVGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLG 78 (190)
Q Consensus 1 m~~~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~ 78 (190)
|+.+++++|++++|+ ..++++++||++++|++++|+||||||||||+|+|+|++ ++.+|+|.++|.--.. .+...
T Consensus 3 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~i~~v--~q~~~ 79 (229)
T 2pze_A 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRISFC--SQFSW 79 (229)
T ss_dssp CCEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEECSCEEEE--CSSCC
T ss_pred ccceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCccEEEECCEEEEE--ecCCc
Confidence 556899999999995 478999999999999999999999999999999999987 7889999998741100 00000
Q ss_pred CChhhHHHHHHH--------HHH------HHHHHHHcCc------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 79 FSAEDRTENIRR--------VGE------VAKLFADAGL------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 79 ~~~~~~~~~~~~--------~~~------~~~~~~~~~~------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+.+....+++.. ... +...+..... ...+..||+||||| .+||+++.+|+++ +||||
T Consensus 80 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll--lLDEP 157 (229)
T 2pze_A 80 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY--LLDSP 157 (229)
T ss_dssp CCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE--EEEST
T ss_pred ccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEECc
Confidence 000011111110 001 1111111111 01246899999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHH
Q 029613 138 LELCEARDPKGLYKLA 153 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~ 153 (190)
|++||+..++.+.+.+
T Consensus 158 ts~LD~~~~~~i~~~l 173 (229)
T 2pze_A 158 FGYLDVLTEKEIFESC 173 (229)
T ss_dssp TTTSCHHHHHHHHHHC
T ss_pred ccCCCHHHHHHHHHHH
Confidence 9999999999999864
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.97 E-value=4.7e-32 Score=216.47 Aligned_cols=148 Identities=20% Similarity=0.217 Sum_probs=107.7
Q ss_pred CCcccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccC
Q 029613 1 MATVGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLG 78 (190)
Q Consensus 1 m~~~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~ 78 (190)
|+ +++++|++++|+ +.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.- .. +.+...
T Consensus 1 M~-~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~i-~~-v~Q~~~ 76 (237)
T 2cbz_A 1 MN-SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVAIKGSV-AY-VPQQAW 76 (237)
T ss_dssp -C-CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS-EEEEEEEEECSCE-EE-ECSSCC
T ss_pred CC-eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEE-EE-EcCCCc
Confidence 54 789999999997 578999999999999999999999999999999999987 7789999998741 10 000000
Q ss_pred CChhhHHHHH-----------HHHHHHHHHHHHcCc---------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613 79 FSAEDRTENI-----------RRVGEVAKLFADAGL---------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP 137 (190)
Q Consensus 79 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~---------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP 137 (190)
+......+++ ..+.+...+....+. ...+..||+||+|| .+||+++.+|+++ +||||
T Consensus 77 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll--lLDEP 154 (237)
T 2cbz_A 77 IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY--LFDDP 154 (237)
T ss_dssp CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE--EEEST
T ss_pred CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE--EEeCc
Confidence 0000111111 111111111111111 22367899999999 6999999999999 99999
Q ss_pred chhhhhcChHHHHHHHH
Q 029613 138 LELCEARDPKGLYKLAR 154 (190)
Q Consensus 138 ~~~ld~~~~~~~~~~~~ 154 (190)
|++||+..++.+++.+.
T Consensus 155 ts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 155 LSAVDAHVGKHIFENVI 171 (237)
T ss_dssp TTTSCHHHHHHHHHHTT
T ss_pred ccccCHHHHHHHHHHHH
Confidence 99999999999998885
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=2.7e-31 Score=214.75 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=112.8
Q ss_pred ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613 4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN 76 (190)
Q Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~ 76 (190)
+++++|++++|++ .++++++||++++|++++|+||||||||||+|+|+|++ ++ +|.|.++|.++.. ..+..
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY-DA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC-CC-CeEEEECCEEhhhcCHHHHhcc
Confidence 6899999999975 46999999999999999999999999999999999987 55 7999999987632 11222
Q ss_pred cCCChhh-------HHHHHHH------HHHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCC
Q 029613 77 LGFSAED-------RTENIRR------VGEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 77 i~~~~~~-------~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~ 127 (190)
++|.+++ ..+++.. -.++...+...++. ..+..||+||+|| .+||+++.+|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 3333332 2233211 01112222222221 2356899999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+..++.+.+.+++.
T Consensus 175 ~ll--lLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 175 KIV--IFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp SEE--EEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CEE--EEECccccCCHHHHHHHHHHHHHh
Confidence 999 999999999999999999988764
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.8e-31 Score=224.66 Aligned_cols=149 Identities=18% Similarity=0.177 Sum_probs=115.4
Q ss_pred ccccCcceecc--CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQE--SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~--~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
.|+++|++++| ++..+++++||++++||+++|+||||||||||+|+|+|++ + .+|.|.++|.++.. ..+..+
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-E-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-C-CCeEEEECCEECCcCChHHHhCCE
Confidence 58999999999 6678999999999999999999999999999999999977 5 78999999987643 112233
Q ss_pred CCChhh-------HHHHHHH-----HHHHHHHHHHcCcce----eecc-----------cCccHHHH-HHHHHhCCCCCe
Q 029613 78 GFSAED-------RTENIRR-----VGEVAKLFADAGLIC----IASL-----------ISPYRKDR-DACRAMLPDSNF 129 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~----~~~~-----------lS~g~kqr-~iarall~~~~i 129 (190)
+|.+|+ ..+++.. -..+...+...++.. .+.. |||||+|| ++|||++.+|++
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 443332 2333210 012233344444432 2334 99999999 699999999999
Q ss_pred EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 130 IEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 130 l~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+ +|||||++||+..++.+.+.+++.
T Consensus 177 L--LLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 177 L--LLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp E--EEESHHHHSCHHHHHHHHHHHHTT
T ss_pred E--EEeCCccCCCHHHHHHHHHHHHHH
Confidence 9 999999999999999999999864
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=2.5e-29 Score=223.44 Aligned_cols=150 Identities=18% Similarity=0.229 Sum_probs=116.2
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
+++++|++++|++ .++++++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++|.++.. ..+..+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 5889999999974 67999999999999999999999999999999999977 7889999999987642 223344
Q ss_pred CCChhh-------HHHHHHHH-------HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCC
Q 029613 78 GFSAED-------RTENIRRV-------GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~ 127 (190)
++.+|+ ..+++... .++...+...++. ..+..|||||||| ++|||++.+|
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p 499 (582)
T 3b5x_A 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499 (582)
T ss_pred EEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 554443 22322210 1122222222221 1246799999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+...+.+.+.+++.
T Consensus 500 ~il--llDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 500 PVL--ILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred CEE--EEECccccCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999988864
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.95 E-value=2.5e-29 Score=223.44 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=114.7
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
+++++|++++|++ .++++++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++|.++.. ..+..+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-CCCCCeEEECCEEccccCHHHHHhhC
Confidence 5889999999974 67999999999999999999999999999999999977 7899999999987642 122233
Q ss_pred CCChhh-------HHHHHHHH-------HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCC
Q 029613 78 GFSAED-------RTENIRRV-------GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDS 127 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~ 127 (190)
+|.+|+ ..+++... .++...+...++. ..+..|||||||| ++||+++.+|
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p 499 (582)
T 3b60_A 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_dssp EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 333332 22333210 1122222222221 1246799999999 6999999999
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+++ +|||||++||+...+.+.+.+++.
T Consensus 500 ~il--llDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b60_A 500 PIL--ILDEATSALDTESERAIQAALDEL 526 (582)
T ss_dssp SEE--EEETTTSSCCHHHHHHHHHHHHHH
T ss_pred CEE--EEECccccCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999888764
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=6e-29 Score=221.27 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=114.2
Q ss_pred ccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
.++++|++++|+ ..++++++||++++||+++|+||||||||||+++|+|++ ++.+|+|.++|.++.. .++..+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-DPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-CCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEECCEEcccCCHHHHHhhe
Confidence 478999999994 467999999999999999999999999999999999977 7899999999988753 122333
Q ss_pred CCChhh-------HHHHHHH---------HHH------HHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRR---------VGE------VAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
+|.+|+ ..+++.. +.+ +...+... ++. ..+..|||||||| .+|||++.+|+
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 443332 2222210 111 11112111 222 2256799999999 69999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ +|||||++||+...+.+.+.+++.
T Consensus 500 il--llDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 500 VL--ILDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp EE--EEESCCTTSCHHHHHHHHHHHHHH
T ss_pred EE--EEECCcccCCHHHHHHHHHHHHHh
Confidence 99 999999999999999999988763
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.95 E-value=4.9e-29 Score=222.13 Aligned_cols=148 Identities=21% Similarity=0.251 Sum_probs=112.4
Q ss_pred cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
++++|++++|++ .++++++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++|.++.. ..+..+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY-DPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS-CCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCEEhhhCCHHHHHhce
Confidence 789999999974 36999999999999999999999999999999999977 7899999999987642 122223
Q ss_pred CCChhh-------HHHHHHH---------HHHHHHHHHHcCc-----------ce----eecccCccHHHH-HHHHHhCC
Q 029613 78 GFSAED-------RTENIRR---------VGEVAKLFADAGL-----------IC----IASLISPYRKDR-DACRAMLP 125 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~---------~~~~~~~~~~~~~-----------~~----~~~~lS~g~kqr-~iarall~ 125 (190)
++.+++ ..+++.. -.++.+.+...++ .. .+..|||||||| ++|||++.
T Consensus 421 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 333322 2233211 0112222222222 11 236799999999 69999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+|+++ +|||||++||+...+.+.+.+++
T Consensus 501 ~p~il--llDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 501 NPKIL--LLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp CCSEE--EEECCCSSCCHHHHHHHHHHHHH
T ss_pred CCCEE--EEECcccCCCHHHHHHHHHHHHH
Confidence 99999 99999999999999999888876
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=7.7e-29 Score=220.20 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=113.1
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
.++++|++++|++ .++++|+||++++|++++|+||||||||||+++|+|++ +|.+|+|.++|.++.. ..+..+
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 3789999999964 57999999999999999999999999999999999977 7899999999987643 122334
Q ss_pred CCChhh-------HHHHHHH------HHHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRR------VGEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~------~~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
+|.+|+ ..+++.. -.++.+..... +.. ..+..+||||||| ++|||++.+|+
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 444332 2233211 01111111111 111 1245799999999 69999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
++ +|||||++||+...+.+.+.+++.
T Consensus 498 il--llDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 498 IL--ILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp EE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred EE--EEECccccCCHHHHHHHHHHHHHH
Confidence 99 999999999999988888888653
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=9.5e-29 Score=220.39 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=113.3
Q ss_pred cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613 5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~ 79 (190)
++++|++++|++ .++++|+||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .++..+++
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-DVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-CCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 789999999964 67999999999999999999999999999999999977 8899999999988753 12233444
Q ss_pred Chhh-------HHHHHHHH------HHHHHHHHHcCc-----------c----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 80 SAED-------RTENIRRV------GEVAKLFADAGL-----------I----CIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 80 ~~~~-------~~~~~~~~------~~~~~~~~~~~~-----------~----~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+|+ ..+++..- .++.......++ . .....+||||||| ++|||++.+|+++
T Consensus 434 v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 434 VLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp ECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred EeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4433 23333210 011111111111 1 1135799999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+...+.+.+.+++.
T Consensus 514 --llDEpts~LD~~~~~~i~~~l~~~ 537 (598)
T 3qf4_B 514 --ILDEATSNVDTKTEKSIQAAMWKL 537 (598)
T ss_dssp --EECCCCTTCCHHHHHHHHHHHHHH
T ss_pred --EEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998888763
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.94 E-value=6.5e-28 Score=197.72 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=92.8
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~ 83 (190)
+++++|+++.+ .++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.- .. +.+...+.+..
T Consensus 40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~i-~~-v~Q~~~l~~~t 114 (290)
T 2bbs_A 40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRI-SF-CSQNSWIMPGT 114 (290)
T ss_dssp ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS-CEEEEEEECCSCE-EE-ECSSCCCCSSB
T ss_pred eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEE-EE-EeCCCccCccc
Confidence 58899999863 67999999999999999999999999999999999977 7789999998741 10 00000000001
Q ss_pred HHHHHH-------HHHH------HHHHHHHcCc------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613 84 RTENIR-------RVGE------VAKLFADAGL------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA 143 (190)
Q Consensus 84 ~~~~~~-------~~~~------~~~~~~~~~~------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~ 143 (190)
..+++. .... +...+..... ...+..||+||+|| .+||+++.+|+++ +|||||++||+
T Consensus 115 v~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll--lLDEPts~LD~ 192 (290)
T 2bbs_A 115 IKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY--LLDSPFGYLDV 192 (290)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE--EEESTTTTCCH
T ss_pred HHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE--EEECCcccCCH
Confidence 122211 0001 1111111111 11246899999999 6999999999999 99999999999
Q ss_pred cChHHHHHHH
Q 029613 144 RDPKGLYKLA 153 (190)
Q Consensus 144 ~~~~~~~~~~ 153 (190)
..++.+++.+
T Consensus 193 ~~~~~i~~~l 202 (290)
T 2bbs_A 193 LTEKEIFESC 202 (290)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=6.6e-27 Score=223.67 Aligned_cols=154 Identities=17% Similarity=0.200 Sum_probs=117.0
Q ss_pred cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
|+++|++++|++ .++|+|+||++++||.++|+|+||||||||+++|.|++ +|.+|.|.+||.++.. .++..+
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 789999999954 46999999999999999999999999999999999977 8899999999988753 234444
Q ss_pred CCChhh-------HHHHHHH--------HHHHHHHHHHc-----------Cccee----ecccCccHHHH-HHHHHhCCC
Q 029613 78 GFSAED-------RTENIRR--------VGEVAKLFADA-----------GLICI----ASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~--------~~~~~~~~~~~-----------~~~~~----~~~lS~g~kqr-~iarall~~ 126 (190)
++.+|+ .++|+.. -.++.+.+... |+... ...||+||||| ++|||++++
T Consensus 1156 ~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~ 1235 (1321)
T 4f4c_A 1156 AIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN 1235 (1321)
T ss_dssp EEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSC
T ss_pred EEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhC
Confidence 444443 2333210 01122222222 22111 45699999999 799999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
|+++ +||||||+||....+.+.+.+++ ..++.|
T Consensus 1236 ~~IL--iLDEaTSaLD~~tE~~Iq~~l~~-~~~~~T 1268 (1321)
T 4f4c_A 1236 PKIL--LLDEATSALDTESEKVVQEALDR-AREGRT 1268 (1321)
T ss_dssp CSEE--EEESCCCSTTSHHHHHHHHHHTT-TSSSSE
T ss_pred CCEE--EEeCccccCCHHHHHHHHHHHHH-HcCCCE
Confidence 9999 99999999999998889888875 445555
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=3.1e-26 Score=201.78 Aligned_cols=148 Identities=12% Similarity=0.061 Sum_probs=108.6
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~ 83 (190)
+++++++++.|++. .++..||++++||+++|+||||||||||+|+|+|++ ++.+|.|.+++..+..............
T Consensus 269 ~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~i~~~~q~~~~~~~~t 346 (538)
T 3ozx_A 269 KMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI-TADEGSVTPEKQILSYKPQRIFPNYDGT 346 (538)
T ss_dssp EEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSBCCEESSCCCEEEECSSCCCCCSSB
T ss_pred eEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCeeeEeechhcccccCCC
Confidence 57788999999864 577789999999999999999999999999999977 7889999888766532110000000011
Q ss_pred HHHHHHHH---------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613 84 RTENIRRV---------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGL 149 (190)
Q Consensus 84 ~~~~~~~~---------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~ 149 (190)
..+++... .....++...++. ..+..|||||+|| .|||+++.+|+++ +|||||++||...+..+
T Consensus 347 v~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lL--lLDEPT~gLD~~~~~~i 424 (538)
T 3ozx_A 347 VQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLY--VLDQPSSYLDVEERYIV 424 (538)
T ss_dssp HHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEE--EEESTTTTCCHHHHHHH
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEeCCccCCCHHHHHHH
Confidence 11222111 0112233334443 3478899999999 6999999999999 99999999999999999
Q ss_pred HHHHHc
Q 029613 150 YKLARA 155 (190)
Q Consensus 150 ~~~~~~ 155 (190)
++.+++
T Consensus 425 ~~~l~~ 430 (538)
T 3ozx_A 425 AKAIKR 430 (538)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=4.4e-26 Score=218.05 Aligned_cols=177 Identities=19% Similarity=0.160 Sum_probs=127.0
Q ss_pred cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
++++|++++|++ .++|+|+||++++|+.++|+||||||||||+++|.|.+ ++.+|.|.+||.++.. .++..+
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-ccccCcccCCCccchhccHHHHhhcc
Confidence 789999999963 57999999999999999999999999999999999977 8899999999987653 233444
Q ss_pred CCChhh-------HHHHHH---------HHHHHH------HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIR---------RVGEVA------KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~---------~~~~~~------~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
+|.+|+ .++|+. .+.+.+ ..+..+ |.. +-...|||||||| ++|||++.+|+
T Consensus 495 ~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~ 574 (1321)
T 4f4c_A 495 AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574 (1321)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred cccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence 555443 223321 111111 112211 221 1246799999999 79999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc--cccccccCCCCCCceEEecCCccc
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL--SIFSFCYYEKLIPRTCKKKISATT 186 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~p~~~~~~~~~~~ 186 (190)
++ +||||||+||.+..+.+.+.+++ ..+|.| -+.+. ...-.+.|.++--.++-+
T Consensus 575 Il--iLDE~tSaLD~~te~~i~~~l~~-~~~~~T~iiiaHr-ls~i~~aD~Iivl~~G~i 630 (1321)
T 4f4c_A 575 IL--LLDEATSALDAESEGIVQQALDK-AAKGRTTIIIAHR-LSTIRNADLIISCKNGQV 630 (1321)
T ss_dssp EE--EEESTTTTSCTTTHHHHHHHHHH-HHTTSEEEEECSC-TTTTTTCSEEEEEETTEE
T ss_pred EE--EEecccccCCHHHHHHHHHHHHH-HhCCCEEEEEccc-HHHHHhCCEEEEeeCCee
Confidence 99 99999999999987777777764 223444 45555 555566665544344433
No 47
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.92 E-value=1.7e-24 Score=167.75 Aligned_cols=175 Identities=67% Similarity=1.138 Sum_probs=145.1
Q ss_pred CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHH
Q 029613 8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87 (190)
Q Consensus 8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~ 87 (190)
+|++|.++...+.+++++..++|++++|+|+|||||||++++|++.+...|...++++++++...+...+++.+++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~ 82 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAEN 82 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHH
Confidence 68899999999999999999999999999999999999999999988544444459999988766666678888887777
Q ss_pred HHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccc
Q 029613 88 IRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSF 167 (190)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (190)
+..+..+...+...+...++...++....|..+++++....++.|+||.|...+-.|..+++++..+.+++..+.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~~~ 162 (200)
T 3uie_A 83 IRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDP 162 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBC
T ss_pred HHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCCCc
Confidence 77777777777777777777778888888888899998878877799999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEecCC
Q 029613 168 CYYEKLIPRTCKKKIS 183 (190)
Q Consensus 168 ~~~~p~~p~~~~~~~~ 183 (190)
|++|..|++++|--+
T Consensus 163 -~~~~~~~~~~idt~~ 177 (200)
T 3uie_A 163 -YEPPLNCEISLGREG 177 (200)
T ss_dssp -CCCCSSCSEEECCSS
T ss_pred -CcCCCCCCEEEecCC
Confidence 999999999998643
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=5.2e-26 Score=200.45 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=105.0
Q ss_pred CcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE---------EEcCcccccc-----
Q 029613 8 TNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY---------ILDGDNLRHG----- 72 (190)
Q Consensus 8 ~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i---------~~~g~~~~~~----- 72 (190)
+|++++|++. .+++++| ++++||+++|+||||||||||+|+|+|++ +|.+|.+ .++|.++...
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~-~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL-IPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 6899999876 4899999 99999999999999999999999999977 6667764 3455443210
Q ss_pred -cccccCCC-------hh----hHHHHHHHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 73 -LNKNLGFS-------AE----DRTENIRRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 73 -~~~~i~~~-------~~----~~~~~~~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
....+++. +. ...+++... ..+..++..+++.. .+..||+||+|| +|||+++.+|+++
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lL-- 180 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFY-- 180 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEE--
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence 00011110 00 112222110 12334555555532 477899999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..++.+.+.+++.
T Consensus 181 lLDEPTs~LD~~~~~~l~~~L~~l 204 (538)
T 1yqt_A 181 FFDEPSSYLDIRQRLNAARAIRRL 204 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999988888763
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=2.3e-26 Score=205.05 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=105.4
Q ss_pred CcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE---------EEcCcccccc----c
Q 029613 8 TNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY---------ILDGDNLRHG----L 73 (190)
Q Consensus 8 ~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i---------~~~g~~~~~~----~ 73 (190)
+|++++|++. .+++++| ++++|++++|+||||||||||+|+|+|++ .|.+|.+ .++|.++... .
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll-~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL-IPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS-CCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC-CCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 8999999876 4899999 99999999999999999999999999987 6777764 3455543210 0
Q ss_pred --ccccCCChh-----------hHHHHHHHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613 74 --NKNLGFSAE-----------DRTENIRRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV 132 (190)
Q Consensus 74 --~~~i~~~~~-----------~~~~~~~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v 132 (190)
...+++..+ ...+++... ..+..++..+++.. .+..||+||+|| +|||+++.+|+++
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL-- 250 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY-- 250 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE--
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence 000111000 112222110 12334555555532 377899999999 6999999999999
Q ss_pred EeeCCchhhhhcChHHHHHHHHcC
Q 029613 133 FMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 133 llDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+|||||++||+..+..+.+.+++.
T Consensus 251 lLDEPTs~LD~~~~~~l~~~L~~l 274 (607)
T 3bk7_A 251 FFDEPSSYLDIRQRLKVARVIRRL 274 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999888888763
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=4.7e-26 Score=217.36 Aligned_cols=148 Identities=19% Similarity=0.221 Sum_probs=111.3
Q ss_pred cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .++..+
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-DPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-CCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 688999999964 46999999999999999999999999999999999977 7899999999987643 122334
Q ss_pred CCChhh-------HHHHHHHH------HHHH---------HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613 78 GFSAED-------RTENIRRV------GEVA---------KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 78 ~~~~~~-------~~~~~~~~------~~~~---------~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
++.+|+ ..+++..- .++. ..+... +.. ..+..|||||||| ++|||++.+|+
T Consensus 467 ~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ 546 (1284)
T 3g5u_A 467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546 (1284)
T ss_dssp EEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 444433 23333211 1111 111111 111 2256799999999 69999999999
Q ss_pred eEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 129 FIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 129 il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
++ +|||||++||+...+.+.+.+++
T Consensus 547 il--iLDEpts~LD~~~~~~i~~~l~~ 571 (1284)
T 3g5u_A 547 IL--LLDEATSALDTESEAVVQAALDK 571 (1284)
T ss_dssp EE--EEESTTCSSCHHHHHHHHHHHHH
T ss_pred EE--EEECCCCCCCHHHHHHHHHHHHH
Confidence 99 99999999999988777777654
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=1.6e-25 Score=199.69 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=106.6
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~ 80 (190)
+++++|+++.|++. .++.+||++++||+++|+||||||||||+|+|+|++ ++.+|.|.+.. .+.. .......++
T Consensus 357 ~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~~-~i~~v~Q~~~~~~~~t 433 (607)
T 3bk7_A 357 LVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKVEWDL-TVAYKPQYIKAEYEGT 433 (607)
T ss_dssp EEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBSCCCCCC-CEEEECSSCCCCCSSB
T ss_pred EEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEEee-EEEEEecCccCCCCCc
Confidence 68899999999865 689999999999999999999999999999999977 77788776521 1110 000001112
Q ss_pred hhhHHHHH--HHH---HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613 81 AEDRTENI--RRV---GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLY 150 (190)
Q Consensus 81 ~~~~~~~~--~~~---~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~ 150 (190)
..+..... ... ..+..++...++. ..+..|||||+|| .+||+++.+|+++ +|||||++||...+..++
T Consensus 434 v~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lL--lLDEPt~~LD~~~~~~l~ 511 (607)
T 3bk7_A 434 VYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY--LLDEPSAYLDVEQRLAVS 511 (607)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEE--EEECTTTTCCHHHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEeCCccCCCHHHHHHHH
Confidence 22211111 000 1123344444443 2377899999999 6999999999999 999999999999999999
Q ss_pred HHHHc
Q 029613 151 KLARA 155 (190)
Q Consensus 151 ~~~~~ 155 (190)
+.+++
T Consensus 512 ~~l~~ 516 (607)
T 3bk7_A 512 RAIRH 516 (607)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=4.4e-26 Score=217.52 Aligned_cols=148 Identities=19% Similarity=0.244 Sum_probs=112.4
Q ss_pred cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613 5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL 77 (190)
Q Consensus 5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i 77 (190)
++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .++..+
T Consensus 1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-DPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp EEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-CCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred EEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEcccCCHHHHHhce
Confidence 688999999974 36999999999999999999999999999999999977 8899999999988643 223334
Q ss_pred CCChhh-------HHHHHH-----------HHHHH------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCC
Q 029613 78 GFSAED-------RTENIR-----------RVGEV------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPD 126 (190)
Q Consensus 78 ~~~~~~-------~~~~~~-----------~~~~~------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~ 126 (190)
++.+|+ ..+++. .+.+. ....... ++. +.+..|||||||| ++||+++.+
T Consensus 1110 ~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A 1110 GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp EEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence 444443 222221 01111 1111111 111 1245799999999 699999999
Q ss_pred CCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 127 SNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
|+++ +|||||++||....+.+++.+++
T Consensus 1190 p~iL--iLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1190 PHIL--LLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp CSSE--EEESCSSSCCHHHHHHHHHHHHH
T ss_pred CCEE--EEeCCcccCCHHHHHHHHHHHHH
Confidence 9999 99999999999999999988876
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=1.8e-25 Score=197.02 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=105.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS 80 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~ 80 (190)
+++++|+++.|++. .++.+||++++||+++|+||||||||||+|+|+|++ ++.+|.|.+.. .+.. ........+
T Consensus 287 ~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~~-~i~~v~Q~~~~~~~~t 363 (538)
T 1yqt_A 287 LVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKIEWDL-TVAYKPQYIKADYEGT 363 (538)
T ss_dssp EEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBCCCCCCC-CEEEECSSCCCCCSSB
T ss_pred EEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECc-eEEEEecCCcCCCCCc
Confidence 67899999999765 689999999999999999999999999999999977 77788776521 1110 000001112
Q ss_pred hhhHHHHH--HHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613 81 AEDRTENI--RRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLY 150 (190)
Q Consensus 81 ~~~~~~~~--~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~ 150 (190)
..+..... ... ..+..++..+++.. .+..|||||+|| .+||+++.+|+++ +|||||++||...+..++
T Consensus 364 v~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lL--lLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 364 VYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIY--LLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEE--EEECTTTTCCHHHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEeCCcccCCHHHHHHHH
Confidence 21111111 000 11223344444432 377899999999 5999999999999 999999999999999999
Q ss_pred HHHHc
Q 029613 151 KLARA 155 (190)
Q Consensus 151 ~~~~~ 155 (190)
+.+++
T Consensus 442 ~~l~~ 446 (538)
T 1yqt_A 442 RAIRH 446 (538)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.91 E-value=5.5e-25 Score=203.63 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=57.6
Q ss_pred ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
|++++|++++|++ +++++++||++.+|++++|+||||||||||+|+|+|++ .+.+|.|.+++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll-~P~sG~I~~~~ 734 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS-CCSEEEEEECT
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEcC
Confidence 7899999999965 67999999999999999999999999999999999977 78899999875
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.1e-24 Score=191.24 Aligned_cols=149 Identities=14% Similarity=0.154 Sum_probs=102.5
Q ss_pred CcceeccCccc-cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE-----------EEcCcccccc---
Q 029613 8 TNIFWQESPIG-RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-----------ILDGDNLRHG--- 72 (190)
Q Consensus 8 ~~l~~~~~~~~-~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i-----------~~~g~~~~~~--- 72 (190)
++++++|+... .+++++ .+++|++++|+||||||||||+|+|+|++ +|.+|.| ++.|..+...
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll-~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQ-KPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCC-CCCCceEecccchhhhhheecChhhhhhhhH
Confidence 46888897653 566666 68999999999999999999999999977 7778876 2333332110
Q ss_pred -ccccc------CCChh----------hHHHHHHH-----HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCC
Q 029613 73 -LNKNL------GFSAE----------DRTENIRR-----VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLP 125 (190)
Q Consensus 73 -~~~~i------~~~~~----------~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~ 125 (190)
....+ .+... ...+.+.. -..+..++..+++.. .+..||+||+|| +|||+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 00000 00000 01111100 012334444555432 378899999999 69999999
Q ss_pred CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
+|+++ +|||||++||+..+..+.+.+++....|
T Consensus 239 ~p~ll--llDEPts~LD~~~~~~l~~~l~~l~~~g 271 (608)
T 3j16_B 239 EADVY--MFDEPSSYLDVKQRLNAAQIIRSLLAPT 271 (608)
T ss_dssp CCSEE--EEECTTTTCCHHHHHHHHHHHHGGGTTT
T ss_pred CCCEE--EEECcccCCCHHHHHHHHHHHHHHHhCC
Confidence 99999 9999999999999999999998754444
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.89 E-value=6.7e-24 Score=191.30 Aligned_cols=139 Identities=20% Similarity=0.205 Sum_probs=87.5
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHH---------------------HHHHHHHhhCC-------CcEEEEcCc
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLA---------------------FSVNKELYSRG-------KLSYILDGD 67 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLl---------------------r~l~g~l~~~~-------~g~i~~~g~ 67 (190)
...+|+++||++++|++++|+||||||||||+ +++.++. .++ .+.+.+++.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~-~~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQME-KPDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccc-cCCccceeccccceEecCc
Confidence 46789999999999999999999999999998 7777765 555 344556554
Q ss_pred ccccccccccCCChh---------------------------hHHHHHHH--------------------HHHHHHHHHH
Q 029613 68 NLRHGLNKNLGFSAE---------------------------DRTENIRR--------------------VGEVAKLFAD 100 (190)
Q Consensus 68 ~~~~~~~~~i~~~~~---------------------------~~~~~~~~--------------------~~~~~~~~~~ 100 (190)
+........+++..+ ...+++.. +.....++..
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp C-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 432111100000000 00011000 0011122444
Q ss_pred cCcc-----eeecccCccHHHH-HHHHHhCCCCC--eEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 101 AGLI-----CIASLISPYRKDR-DACRAMLPDSN--FIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 101 ~~~~-----~~~~~lS~g~kqr-~iarall~~~~--il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
.++. ..+..||+||+|| +||||++.+|+ ++ +|||||++||+..++.+.+.+++.+
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lL--lLDEPtsgLD~~~~~~l~~~l~~l~ 251 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY--VLDEPSIGLHQRDNDRLIATLKSMR 251 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEE--EEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEE--EEECCccCCCHHHHHHHHHHHHHHH
Confidence 4442 3478899999999 69999999988 99 9999999999999999998887643
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.4e-23 Score=184.60 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=96.8
Q ss_pred CcceeccCc-cccccccccccCCc-----cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC-
Q 029613 8 TNIFWQESP-IGRLERQKLLNQKG-----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS- 80 (190)
Q Consensus 8 ~~l~~~~~~-~~~l~~~sl~i~~G-----eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~- 80 (190)
++++++|+. ..+++++||++.+| |+++|+||||||||||+|+|+|++ ++.+|.. +....+.. ..+.....
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~-~p~~G~~-~~~~~i~~-~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL-KPDEGQD-IPKLNVSM-KPQKIAPKF 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS-CCSBCCC-CCSCCEEE-ECSSCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC-CCCCCcC-ccCCcEEE-ecccccccC
Confidence 567778865 46899999999998 789999999999999999999977 6666642 11111100 00000000
Q ss_pred hhhHHHHHHH--------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613 81 AEDRTENIRR--------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK 147 (190)
Q Consensus 81 ~~~~~~~~~~--------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~ 147 (190)
.....+++.. -.....++...++. ..+..|||||+|| ++||+++.+|+++ +|||||++||...+.
T Consensus 427 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lL--lLDEPT~gLD~~~~~ 504 (608)
T 3j16_B 427 PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIY--LIDEPSAYLDSEQRI 504 (608)
T ss_dssp CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEE--EECCTTTTCCHHHHH
T ss_pred CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEECCCCCCCHHHHH
Confidence 0000111100 00112233333432 3478899999999 6999999999999 999999999999999
Q ss_pred HHHHHHHc
Q 029613 148 GLYKLARA 155 (190)
Q Consensus 148 ~~~~~~~~ 155 (190)
.+++.+++
T Consensus 505 ~i~~ll~~ 512 (608)
T 3j16_B 505 ICSKVIRR 512 (608)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888775
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=2.2e-23 Score=192.89 Aligned_cols=142 Identities=14% Similarity=0.140 Sum_probs=99.5
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHH-Hh--h-CCC-cEEEEcCcccccccccccCC
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE-LY--S-RGK-LSYILDGDNLRHGLNKNLGF 79 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~-l~--~-~~~-g~i~~~g~~~~~~~~~~i~~ 79 (190)
+...|++++|+++.+++++||++.+|++++|+||||||||||+|+|+|- +. + ... ..+++. .+... .+
T Consensus 436 L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~-q~~~~------~~ 508 (986)
T 2iw3_A 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVE-HDIDG------TH 508 (986)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETT-CCCCC------CC
T ss_pred eEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEc-ccccc------cc
Confidence 3455899999999999999999999999999999999999999999952 10 0 000 111111 11000 00
Q ss_pred ChhhHHHHHHH-----HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHH
Q 029613 80 SAEDRTENIRR-----VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKG 148 (190)
Q Consensus 80 ~~~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~ 148 (190)
......+++.. -..+...+...++. ..+..||+||||| .+||+++.+|+++ +|||||++||+..++.
T Consensus 509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lL--LLDEPTs~LD~~~~~~ 586 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADIL--LLDEPTNHLDTVNVAW 586 (986)
T ss_dssp TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEE--EEESTTTTCCHHHHHH
T ss_pred cCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE--EEECCccCCCHHHHHH
Confidence 00001111110 12233445555552 2467899999999 6999999999999 9999999999999999
Q ss_pred HHHHHHc
Q 029613 149 LYKLARA 155 (190)
Q Consensus 149 ~~~~~~~ 155 (190)
+.+.+++
T Consensus 587 l~~~L~~ 593 (986)
T 2iw3_A 587 LVNYLNT 593 (986)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.87 E-value=4.5e-23 Score=181.63 Aligned_cols=146 Identities=13% Similarity=0.165 Sum_probs=99.5
Q ss_pred CcceeccCcccccccccccc-CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE-----------EEcCcccccc---
Q 029613 8 TNIFWQESPIGRLERQKLLN-QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-----------ILDGDNLRHG--- 72 (190)
Q Consensus 8 ~~l~~~~~~~~~l~~~sl~i-~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i-----------~~~g~~~~~~--- 72 (190)
++...+|+... ++-.++.+ ++|++++|+||||||||||+|+|+|++ .|..|.+ .++|.++...
T Consensus 3 ~~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~-~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 3 GEVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI-IPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CCEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS-CCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 45778887432 33334444 589999999999999999999999977 7778876 4566544210
Q ss_pred -------cccccCCChh-------hHHHHHHHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613 73 -------LNKNLGFSAE-------DRTENIRRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 73 -------~~~~i~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il 130 (190)
....+.+... ...+.+... .....++..+++.. .+..||+||+|| +||||++.+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 0001111111 011111110 11233444455432 377899999999 6999999999999
Q ss_pred EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 131 EVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 131 ~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|||||++||+..+..+++.+++..
T Consensus 161 --llDEPts~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 161 --IFDQPSSYLDVRERMNMAKAIRELL 185 (538)
T ss_dssp --EEESTTTTCCHHHHHHHHHHHHHHC
T ss_pred --EEECCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988753
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=8.6e-23 Score=154.77 Aligned_cols=101 Identities=20% Similarity=0.205 Sum_probs=67.4
Q ss_pred ccccccCCccEEEEECCCCCcHHHHHH------------HHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHH
Q 029613 22 RQKLLNQKGCVVWITGLSGSGKSTLAF------------SVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIR 89 (190)
Q Consensus 22 ~~sl~i~~Geii~L~G~nGsGKSTLlr------------~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~ 89 (190)
++||++++|++++|+||||||||||++ .+.|.+ .+..+...+ .....+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~-~~~~~~~~~----------------~~~~~~--- 60 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLM-SDDENDQTV----------------TGAAFD--- 60 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHH-CSSTTCGGG----------------HHHHHH---
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHh-cCcccchhh----------------HHHHHH---
Confidence 589999999999999999999999999 444444 221111000 000111
Q ss_pred HHHHHHHHHHHcCcce---eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613 90 RVGEVAKLFADAGLIC---IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 90 ~~~~~~~~~~~~~~~~---~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~ 144 (190)
.+..........+... .....|++++|| .+||+++.+|+++ +|||||++||++
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~l--llDEPt~~Ld~~ 117 (171)
T 4gp7_A 61 VLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAV--VFNLPEKVCQER 117 (171)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEE--EECCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEE--EEeCCHHHHHHH
Confidence 1111111122233322 234468999999 6999999999999 999999999998
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.83 E-value=4e-21 Score=173.20 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=45.5
Q ss_pred eecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 106 IASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 106 ~~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
.+..|||||+|| +|||+++.+| +++ +|||||++||+.....+.+.+++....|
T Consensus 540 ~~~~LSgG~~qrv~iAraL~~~p~~p~ll--llDEPt~~LD~~~~~~i~~~l~~l~~~g 596 (670)
T 3ux8_A 540 PATTLSGGEAQRVKLAAELHRRSNGRTLY--ILDEPTTGLHVDDIARLLDVLHRLVDNG 596 (670)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCCCSCEEE--EEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CchhCCHHHHHHHHHHHHHhhCCCCCcEE--EEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 478899999999 6999999876 499 9999999999999999998887643334
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-23 Score=181.40 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=97.4
Q ss_pred cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc-E-EEEcCcccccccccccCCC
Q 029613 3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL-S-YILDGDNLRHGLNKNLGFS 80 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g-~-i~~~g~~~~~~~~~~i~~~ 80 (190)
+|++++|++++|+ ++||++++|++++|+||||||||||+|+|+|++ .+.+| . |+++++. . ..+++.
T Consensus 117 ~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~-~p~~G~~pI~vdg~~-~----~~i~~v 184 (460)
T 2npi_A 117 TMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA-LKFNAYQPLYINLDP-Q----QPIFTV 184 (460)
T ss_dssp THHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT-HHHHCCCCEEEECCT-T----SCSSSC
T ss_pred chhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc-cccCCceeEEEcCCc-c----CCeeee
Confidence 4788889988885 799999999999999999999999999999977 56678 7 8888742 1 111222
Q ss_pred hhhH-----------HHHHHHH----------HHHHHHHHHcCccee--ecccCccHHHH-HHHHH--hCCCCCe----E
Q 029613 81 AEDR-----------TENIRRV----------GEVAKLFADAGLICI--ASLISPYRKDR-DACRA--MLPDSNF----I 130 (190)
Q Consensus 81 ~~~~-----------~~~~~~~----------~~~~~~~~~~~~~~~--~~~lS~g~kqr-~iara--ll~~~~i----l 130 (190)
++.. .+++ .. ..+..++...++... +..||+||+|| ++||+ ++.+|++ +
T Consensus 185 pq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGL 263 (460)
T 2npi_A 185 PGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGC 263 (460)
T ss_dssp SSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred ccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence 2110 0000 00 000011111222111 56799999999 69999 9999999 9
Q ss_pred EEEeeC-CchhhhhcChHHHHHHHHc
Q 029613 131 EVFMNM-PLELCEARDPKGLYKLARA 155 (190)
Q Consensus 131 ~vllDE-P~~~ld~~~~~~~~~~~~~ 155 (190)
+||| ||++||.. .+.+.+.+++
T Consensus 264 --lLDEpPts~LD~~-~~~l~~l~~~ 286 (460)
T 2npi_A 264 --IVDTPSISQLDEN-LAELHHIIEK 286 (460)
T ss_dssp --EEECCCGGGSCSS-CHHHHHHHHH
T ss_pred --EEeCCcccccChh-HHHHHHHHHH
Confidence 9999 99999999 7777777765
No 63
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.82 E-value=2.7e-22 Score=156.98 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=84.1
Q ss_pred eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---cccccccCCChhhHHHHH
Q 029613 12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---HGLNKNLGFSAEDRTENI 88 (190)
Q Consensus 12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---~~~~~~i~~~~~~~~~~~ 88 (190)
++|+.+.+++++ ++|++++|+||||||||||+++|+|+ ++.+|.|.. .++. ...+..++|.+++..+++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl 79 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKI 79 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH--HHHTTSCSE--EEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC--CCcCCeeee--EEecCCchhhhcceEEecCCHHHHH
Confidence 467778899986 89999999999999999999999997 455666532 1111 122345677777654443
Q ss_pred -HHHHHHHHHHHH-cC---cceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 89 -RRVGEVAKLFAD-AG---LICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 89 -~~~~~~~~~~~~-~~---~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.........+.. .. +...... ..||+|| .+||+++.+|+++ +|||||++ .++.+.+.+++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~ll--lLDEPts~----~~~~l~~~l~~l 146 (208)
T 3b85_A 80 DPYLRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFV--ILDEAQNT----TPAQMKMFLTRL 146 (208)
T ss_dssp CTTTHHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEE--EECSGGGC----CHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEE--EEeCCccc----cHHHHHHHHHHh
Confidence 111100000000 00 0011111 3499999 6999999999999 99999999 778888888764
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.80 E-value=2.2e-20 Score=171.14 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=50.0
Q ss_pred HHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCC---CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 94 VAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPD---SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 94 ~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~---~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
...++..+++. ..+..||+||+|| .+|++++.+ |+++ +|||||++||..+.+.+++.+++.
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--ILDEPTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVY--VLDEPTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEE--EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence 34455555553 2367899999999 699999996 6999 999999999999999999888764
No 65
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.79 E-value=2.1e-21 Score=159.90 Aligned_cols=127 Identities=15% Similarity=0.039 Sum_probs=89.9
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc---c-cccccc-ccC
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN---L-RHGLNK-NLG 78 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~---~-~~~~~~-~i~ 78 (190)
+|+++|++++|+ .++|+++||++++|++++|+||||||||||+++|+|++ +|.|...+.. + ...+.. ++.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q~~~lf~~ti~~~ni~ 175 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANHKSHFWLASLADTRAA 175 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGTTSGGGGGGGTTCSCE
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecCccccccccHHHHhhc
Confidence 478899999998 77999999999999999999999999999999999977 6777653321 1 111221 333
Q ss_pred CChhhHHHHHHHHHHHHHH-HHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613 79 FSAEDRTENIRRVGEVAKL-FADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLY 150 (190)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~ 150 (190)
+.++.. + .+...... +. .++. +..||+||||| ||+++.+|+++ + |++||+...+.+.
T Consensus 176 ~~~~~~-~---~~~~~i~~~L~-~gld--g~~LSgGqkQR--ARAll~~p~iL--l----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 176 LVDDAT-H---ACWRYFDTYLR-NALD--GYPVSIDRKHK--AAVQIKAPPLL--V----TSNIDVQAEDRYL 233 (305)
T ss_dssp EEEEEC-H---HHHHHHHHTTT-GGGG--TCCEECCCSSC--CCCEECCCCEE--E----EESSCSTTCGGGG
T ss_pred cCcccc-H---HHHHHHHHHhH-ccCC--ccCcCHHHHHH--HHHHhCCCCEE--E----ECCCCHHHHHHHH
Confidence 321111 1 11111111 11 1221 66799999999 99999999997 6 9999998877765
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.78 E-value=1.6e-19 Score=153.59 Aligned_cols=46 Identities=4% Similarity=-0.180 Sum_probs=42.9
Q ss_pred cCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 110 ISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 110 lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+|+||+|| .+|++++.+| +++ +|||||++||......+.+.+++-.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~L--lLDEpt~~LD~~~~~~l~~~L~~l~ 344 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSV--VFDEVDAGIGGAAAIAVAEQLSRLA 344 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEE--EESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHHh
Confidence 79999999 6999999999 999 9999999999999999999998743
No 67
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=3.1e-20 Score=145.92 Aligned_cols=133 Identities=12% Similarity=0.029 Sum_probs=80.5
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHH
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRR 90 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~ 90 (190)
....|+++||++++|++++|+||||||||||+++|+|++ + |.+.+ |.++... ....++|.+++.......
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 356799999999999999999999999999999999976 3 66777 5544211 122344444332211110
Q ss_pred H--------------------HHHHHHHHHcCcceeecccCccHHHH-HH-----HHHhCCCCCeEEEEeeCCchhhhhc
Q 029613 91 V--------------------GEVAKLFADAGLICIASLISPYRKDR-DA-----CRAMLPDSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 91 ~--------------------~~~~~~~~~~~~~~~~~~lS~g~kqr-~i-----arall~~~~il~vllDEP~~~ld~~ 144 (190)
. ..+..++...........+|+|++|| .+ +++++..|+++ +||||++.+|..
T Consensus 84 ~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~--~Lde~~~~~d~~ 161 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTD--VLLSRLLTRNTE 161 (218)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHH--HHHHHHHHTCCC
T ss_pred hhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHH--HHHHHHHhcCCC
Confidence 0 11222333322222345689999999 48 78899899998 999999999998
Q ss_pred ChHHHHHHHHc
Q 029613 145 DPKGLYKLARA 155 (190)
Q Consensus 145 ~~~~~~~~~~~ 155 (190)
..+.+.+.+.+
T Consensus 162 ~~~~i~~~l~~ 172 (218)
T 1z6g_A 162 NQEQIQKRMEQ 172 (218)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88777776653
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.76 E-value=5.4e-19 Score=162.96 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=49.6
Q ss_pred HHHHHHcCcce-----eecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 95 AKLFADAGLIC-----IASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 95 ~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
...+..+++.. .+..||+||+|| .+|++++.+| +++ +|||||++||..+++.+++.+++.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--ILDEPTsGLD~~~~~~l~~lL~~L 894 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY--ILDEPTTGLHVDDIARLLDVLHRL 894 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEE--EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence 34555666543 367899999999 6999999875 899 999999999999999999888764
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.76 E-value=1e-20 Score=161.63 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=90.6
Q ss_pred cccccccccccCCcc--------------------EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----
Q 029613 17 IGRLERQKLLNQKGC--------------------VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----- 71 (190)
Q Consensus 17 ~~~l~~~sl~i~~Ge--------------------ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----- 71 (190)
..+++++||++++|+ +++|+||||||||||+++|+|++ ++.+|.+.+++.++..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~-~p~~GsI~~~g~~~t~~~~v~ 114 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG-NEEEGAAKTGVVEVTMERHPY 114 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC-TTSTTSCCCCC----CCCEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC-CccCceEEECCeecceeEEec
Confidence 468999999999999 99999999999999999999977 6778888777754311
Q ss_pred --------ccccccCCChhhHHHHHHHHHHHHHHHHHcCcc---eeecccCcc--HHHH-HHHHHhCC----------CC
Q 029613 72 --------GLNKNLGFSAEDRTENIRRVGEVAKLFADAGLI---CIASLISPY--RKDR-DACRAMLP----------DS 127 (190)
Q Consensus 72 --------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lS~g--~kqr-~iarall~----------~~ 127 (190)
......++.... . .+...+...++. .... +|+| ++|| .+|++++. +|
T Consensus 115 q~~~~~~ltv~D~~g~~~~~-----~---~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 115 KHPNIPNVVFWDLPGIGSTN-----F---PPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp ECSSCTTEEEEECCCGGGSS-----C---CHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred cccccCCeeehHhhcccchH-----H---HHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 001111221100 0 111222222222 2233 8888 9999 59999999 99
Q ss_pred CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 128 NFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 128 ~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+++ ++||||++||+..++.+.+.+++
T Consensus 186 dll--lLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 186 DSD--ITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp HHH--HHHHHTTCCTTCCHHHHHHHHHH
T ss_pred ccc--ccCcccccCCHHHHHHHHHHHHH
Confidence 998 99999999999999988877765
No 70
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.75 E-value=1.1e-18 Score=161.42 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=48.9
Q ss_pred HHHHHcCcce-----eecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 96 KLFADAGLIC-----IASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 96 ~~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
..+..+++.. .+..||+||+|| .+|++++.+| +++ +|||||++||..+++.+++.+++.
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--ILDEPTsGLD~~~~~~l~~lL~~L 912 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVY--ILDEPTTGLHFDDIRKLLNVINGL 912 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence 4455555533 367899999999 6999999875 899 999999999999999999888754
No 71
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.74 E-value=1.2e-17 Score=147.34 Aligned_cols=155 Identities=39% Similarity=0.582 Sum_probs=90.6
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc-EE-EEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL-SY-ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG 102 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g-~i-~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (190)
..+++|++++|+|+||||||||+++|++.+ .+..| .+ +++++++...+...+++...++..+.+++..+.+.+...+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L-~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~ 442 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARL-MEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNR 442 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHH-HTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhh-cccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999999998 44454 55 5899887654445567777666556666655555444444
Q ss_pred cceeecccCccHHHHHHHHHhCCCC-CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEec
Q 029613 103 LICIASLISPYRKDRDACRAMLPDS-NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK 181 (190)
Q Consensus 103 ~~~~~~~lS~g~kqr~iarall~~~-~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~ 181 (190)
...+....+++...+..++.++... ++++|+||.|...|..|+++.+|...+.+.++++.+...+ |+.|..||+++|-
T Consensus 443 ~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~-~e~P~~adl~Idt 521 (552)
T 3cr8_A 443 GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDP-YEVPETPELAIDT 521 (552)
T ss_dssp CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CC-CCCCSSCSEEECC
T ss_pred CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhcccc-ccCCCCCCEEEEC
Confidence 4444444444455555566666543 4777899999999999999999987777889999999999 9999999999974
No 72
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=7.4e-18 Score=155.67 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=49.8
Q ss_pred HHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 94 VAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 94 ~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
....+...++. ..+..|||||+|| .+||+|+.+| +++ +|||||++||+.+.+.+++.+++.
T Consensus 785 ~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL--ILDEPTsGLD~~~~~~L~~lL~~L 854 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY--ILDEPTVGLHFEDVRKLVEVLHRL 854 (916)
T ss_dssp HHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence 34455566653 3467899999999 6999999875 699 999999999999999999888764
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.71 E-value=1.4e-18 Score=144.68 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=72.2
Q ss_pred ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHH
Q 029613 18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKL 97 (190)
Q Consensus 18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 97 (190)
.+++++++.+++|++++|+||||||||||+++|+|++ ++.+|.|.++|.+... ... ..
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~~~~g~i~i~~~~e~~-------~~~--~~------------ 216 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIEDTEEIV-------FKH--HK------------ 216 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-CTTSCEEEEESSCCCC-------CSS--CS------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcEEEECCeeccc-------ccc--ch------------
Confidence 4789999999999999999999999999999999987 6789999998864211 000 00
Q ss_pred HHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 98 FADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 98 ~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
....++. .+|++|| .+++++..+|+++ +||||++
T Consensus 217 ----~~i~~~~--ggg~~~r~~la~aL~~~p~il--ildE~~~ 251 (330)
T 2pt7_A 217 ----NYTQLFF--GGNITSADCLKSCLRMRPDRI--ILGELRS 251 (330)
T ss_dssp ----SEEEEEC--BTTBCHHHHHHHHTTSCCSEE--EECCCCS
T ss_pred ----hEEEEEe--CCChhHHHHHHHHhhhCCCEE--EEcCCCh
Confidence 0000110 1789999 5999999999999 9999998
No 74
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.71 E-value=3.3e-19 Score=147.37 Aligned_cols=131 Identities=14% Similarity=0.016 Sum_probs=84.7
Q ss_pred ccccCcceeccCccccccccccc-----------------------cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLL-----------------------NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~-----------------------i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g 60 (190)
+|++++|++.|+ ++++++++. +++|++++|+||||||||||+++|+|++. +..|
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~~G 119 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA-RWDH 119 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-TSTT
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-ccCC
Confidence 578899999995 566666654 89999999999999999999999999884 4322
Q ss_pred ----EEEEcCccccc-ccccccCCC-----hhhHHHHHHHHHHHHHHHHHcCcc-eeecccCccHHHH-HHHHHhCCCCC
Q 029613 61 ----SYILDGDNLRH-GLNKNLGFS-----AEDRTENIRRVGEVAKLFADAGLI-CIASLISPYRKDR-DACRAMLPDSN 128 (190)
Q Consensus 61 ----~i~~~g~~~~~-~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lS~g~kqr-~iarall~~~~ 128 (190)
.+...+..+.. ....++.+. +.. .....+.+....+. .+.. ..+..+|+|++|| .+|++++.+|+
T Consensus 120 ~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~--~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ 196 (312)
T 3aez_A 120 HPRVDLVTTDGFLYPNAELQRRNLMHRKGFPES--YNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPD 196 (312)
T ss_dssp CCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG--BCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred CCeEEEEecCccCCcccHHHHHHHHHhcCCChH--HHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCC
Confidence 12222111110 111111110 110 00112222333333 2332 4467899999999 59999999999
Q ss_pred eEEEEeeCCchhhh
Q 029613 129 FIEVFMNMPLELCE 142 (190)
Q Consensus 129 il~vllDEP~~~ld 142 (190)
++ +||||+..+|
T Consensus 197 il--IlDep~~~~d 208 (312)
T 3aez_A 197 IL--ILEGLNVLQT 208 (312)
T ss_dssp EE--EEECTTTTCC
T ss_pred EE--EECCccccCC
Confidence 99 9999999874
No 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.69 E-value=6e-18 Score=129.14 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=72.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCChhhHH--HHHHHHHHHHHHHHH-cCcc
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFSAEDRT--ENIRRVGEVAKLFAD-AGLI 104 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~-~~~~ 104 (190)
.++|+||||||||||+++|+|++. +.++|.+... .....++|..++.. +++ +.... +.. ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~--~~~~~--~~~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI--FSSKF--FTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETTCCEEE--EEETT--CCCSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCcHHHHH--HHhhc--CCcccccc
Confidence 589999999999999999999873 2233322111 11122333332210 000 00000 000 0112
Q ss_pred eeecccCccHHHH-HHHHH-----hCCCCCeEEEEeeC--CchhhhhcChHHHHHHHHc
Q 029613 105 CIASLISPYRKDR-DACRA-----MLPDSNFIEVFMNM--PLELCEARDPKGLYKLARA 155 (190)
Q Consensus 105 ~~~~~lS~g~kqr-~iara-----ll~~~~il~vllDE--P~~~ld~~~~~~~~~~~~~ 155 (190)
..+..+|+||+|| .+|++ ++.+|+++ +||| |++++|+...+.+.+.+++
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~~p~ll--ilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKDRRKVI--IIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEE--EECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ccccCcCHHHHHHHHHHhhccccccccCCCEE--EEeCCCCcccCCHHHHHHHHHHHhc
Confidence 3466799999999 69996 99999999 9999 9999999999999988876
No 76
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.69 E-value=2.3e-17 Score=133.15 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=79.9
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-CcEEEEcCcccccccccccCCChh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-KLSYILDGDNLRHGLNKNLGFSAE 82 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-~g~i~~~g~~~~~~~~~~i~~~~~ 82 (190)
++.++++.+. ++++++| +++|++++|+||||||||||+++|+|++ ++. +|.|.++|+++........++..+
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g~~i~~~~~~~~~~v~q 77 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIEYVFKHKKSIVNQ 77 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcCCcceeecCCcceeeeH
Confidence 5678888764 6899999 8999999999999999999999999988 454 789999888764211111111100
Q ss_pred hHHHHHHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 83 DRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
. ..++ ....-...+++++..+|+++ ++|||+ |+.....+.+.+..|
T Consensus 78 ~----------------~~gl-------~~~~l~~~la~aL~~~p~il--llDEp~---D~~~~~~~l~~~~~g 123 (261)
T 2eyu_A 78 R----------------EVGE-------DTKSFADALRAALREDPDVI--FVGEMR---DLETVETALRAAETG 123 (261)
T ss_dssp E----------------EBTT-------TBSCHHHHHHHHHHHCCSEE--EESCCC---SHHHHHHHHHHHHTT
T ss_pred H----------------HhCC-------CHHHHHHHHHHHHhhCCCEE--EeCCCC---CHHHHHHHHHHHccC
Confidence 0 0111 11111236999999999999 999999 554444444444433
No 77
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.68 E-value=7.5e-17 Score=135.82 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=47.1
Q ss_pred eecccCccHHHH-HHHHHhC------CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 106 IASLISPYRKDR-DACRAML------PDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 106 ~~~~lS~g~kqr-~iarall------~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
.+..||+||+|| .+|++++ .+|+++ +|||||++||+.....+.+.+++....|.+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~l--llDEpt~~LD~~~~~~~~~~l~~l~~~g~t 337 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAF--FIDEGFSSLDTENKEKIASVLKELERLNKV 337 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEE--EEESCCTTSCHHHHHHHHHHHHGGGGSSSE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEE--EEeCCCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 356799999999 6999998 799999 999999999999999999999875444433
No 78
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.68 E-value=1.1e-16 Score=132.54 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=43.0
Q ss_pred ecccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 107 ASLISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 107 ~~~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+..+|+||+|| ++|++++ .+|+++ +|||||++||+...+.+.+.+++.
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~l--llDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFY--VLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEE--EEESCCSSCCHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEE--EEeCCCCCCCHHHHHHHHHHHHHh
Confidence 46799999999 6999985 678999 999999999999999999988764
No 79
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.68 E-value=2.6e-17 Score=135.40 Aligned_cols=126 Identities=10% Similarity=0.074 Sum_probs=79.1
Q ss_pred cCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--------c--ccccCCChhh
Q 029613 14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--------L--NKNLGFSAED 83 (190)
Q Consensus 14 ~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--------~--~~~i~~~~~~ 83 (190)
++...+++.+||++++|++++|+|||||||||+++.|+|++ .+.+|.|.+.+.++... . +..+++.+++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~ 162 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE 162 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEec
Confidence 33333346789999999999999999999999999999988 55678899988775321 0 1123333322
Q ss_pred HH---HHHHHHHHHHHH-HHH--------cCcce----eecccCccHHHH-HHHHHhCCCCC--eEEEEeeCCchhhhhc
Q 029613 84 RT---ENIRRVGEVAKL-FAD--------AGLIC----IASLISPYRKDR-DACRAMLPDSN--FIEVFMNMPLELCEAR 144 (190)
Q Consensus 84 ~~---~~~~~~~~~~~~-~~~--------~~~~~----~~~~lS~g~kqr-~iarall~~~~--il~vllDEP~~~ld~~ 144 (190)
.. ........+... ... .+... .+..+| +|| .+||+++.+|+ ++ +|| ||+++|..
T Consensus 163 ~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL--vLD-ptsglD~~ 236 (302)
T 3b9q_A 163 GDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL--VLD-GNTGLNML 236 (302)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEE--EEE-GGGGGGGH
T ss_pred CCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEE--EEe-CCCCcCHH
Confidence 11 000000111100 000 11111 123355 677 69999999999 88 999 99999876
Q ss_pred Ch
Q 029613 145 DP 146 (190)
Q Consensus 145 ~~ 146 (190)
..
T Consensus 237 ~~ 238 (302)
T 3b9q_A 237 PQ 238 (302)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 80
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.66 E-value=3e-15 Score=113.26 Aligned_cols=154 Identities=55% Similarity=0.933 Sum_probs=106.9
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA 107 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (190)
.+|++++|+|++||||||++++|++.+.+.+...+.++++.+...+....++..++....+.++...+..+...+.....
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT 82 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 47999999999999999999999998854344477778877765444445676666666666655544455455554444
Q ss_pred cccCccHHHHHHHHHhCC--CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613 108 SLISPYRKDRDACRAMLP--DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI 182 (190)
Q Consensus 108 ~~lS~g~kqr~iarall~--~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~ 182 (190)
..+++...++...+.++. ....++++||.|...+-.|..+.++...+.+++......... |+.|..+++++|--
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ad~vid~~ 158 (179)
T 2pez_A 83 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSE-YEKPEAPELVLKTD 158 (179)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBC-CCCCSSCSEEEETT
T ss_pred ecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccccccCCcc-ccCCCCCcEEEECC
Confidence 556666554533333321 123345699999999988877777777777777776666777 89899999988753
No 81
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.65 E-value=2.4e-15 Score=134.07 Aligned_cols=174 Identities=52% Similarity=0.888 Sum_probs=122.4
Q ss_pred CcceeccCccccccccccccC----CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613 8 TNIFWQESPIGRLERQKLLNQ----KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED 83 (190)
Q Consensus 8 ~~l~~~~~~~~~l~~~sl~i~----~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~ 83 (190)
.|+.|.-..++.-++....-+ +|.+++|+|.+||||||+++.|+..+...+...+.++++.+...+....++...+
T Consensus 26 ~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~d 105 (630)
T 1x6v_B 26 TNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED 105 (630)
T ss_dssp --------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHH
T ss_pred ccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhh
Confidence 456665555554455554444 7889999999999999999999998855566677888887766554445577667
Q ss_pred HHHHHHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613 84 RTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGL 161 (190)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~ 161 (190)
+.++++++..++..+...+...+....++.+..|..++.++.+. +++.|+||.|...+-.|..+.+|+..+++++..+
T Consensus 106 ree~~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~ 185 (630)
T 1x6v_B 106 REENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF 185 (630)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----C
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHH
Confidence 77777777666665556676666555666665666566655432 4666799999999999998899988888888889
Q ss_pred ccccccccCCCCCCceEEecC
Q 029613 162 LSIFSFCYYEKLIPRTCKKKI 182 (190)
Q Consensus 162 ~~~~~~~~~~p~~p~~~~~~~ 182 (190)
.+.... |+.|..|++++|--
T Consensus 186 ~~~~~~-Ye~p~~~dlvIDts 205 (630)
T 1x6v_B 186 TGIDSE-YEKPEAPELVLKTD 205 (630)
T ss_dssp BTTTBC-CCCCSSCSEEEETT
T ss_pred HHhhhh-hcccCCCcEEEECC
Confidence 999999 99999999999864
No 82
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.63 E-value=1e-14 Score=110.91 Aligned_cols=158 Identities=35% Similarity=0.590 Sum_probs=105.8
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCc
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGL 103 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (190)
.+...+|.+++|+|++||||||+++.|+..+...+.-.++++++.+...+....++...++...+..+..++..+...+.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~ 86 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGV 86 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCC
Confidence 45567899999999999999999999999885444434567777765544444556666655555444444444334454
Q ss_pred ceeecccCccHHHHHHHHHhCCC--CCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEec
Q 029613 104 ICIASLISPYRKDRDACRAMLPD--SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK 181 (190)
Q Consensus 104 ~~~~~~lS~g~kqr~iarall~~--~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~ 181 (190)
..+....+..+..|...+.++.. .+.+.|+||.|...+-.|..+.++...+...+..+..+... |++|..+++++|.
T Consensus 87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~Id~ 165 (186)
T 2yvu_A 87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDP-YEPPENPQLVLDT 165 (186)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSC-CCCCSSCSEEEET
T ss_pred EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhc-ccCCCCCcEEEEC
Confidence 44444455555555444444332 23445699999999988887776666556666666667777 9988888999986
Q ss_pred C
Q 029613 182 I 182 (190)
Q Consensus 182 ~ 182 (190)
-
T Consensus 166 ~ 166 (186)
T 2yvu_A 166 E 166 (186)
T ss_dssp T
T ss_pred C
Confidence 3
No 83
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.63 E-value=3.6e-15 Score=115.94 Aligned_cols=173 Identities=52% Similarity=0.819 Sum_probs=113.7
Q ss_pred cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccccccccCCChhhHHHH
Q 029613 9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87 (190)
Q Consensus 9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~ 87 (190)
+..|.-+..+...+-.+.+++|.+++|+|++||||||+++.|++.+. ..|...++++++.+...+.....+...++.+.
T Consensus 4 ~~~~~~~~~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~ 83 (211)
T 1m7g_A 4 NITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN 83 (211)
T ss_dssp CCCHHHHCCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHH
T ss_pred cccccccccCHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHH
Confidence 34444445566677778899999999999999999999999999884 22323788888776544433334554555555
Q ss_pred HHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCC--------CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCC
Q 029613 88 IRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLP--------DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIK 159 (190)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~--------~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~ 159 (190)
+..+..........+...+....+..+..+..++.+.. ..+.+.|+||.|...+-.|..+.++...+++...
T Consensus 84 ~~~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~ 163 (211)
T 1m7g_A 84 IRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIK 163 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchh
Confidence 54443332222233443444444444444544444322 1223456999999999888767777777777766
Q ss_pred CcccccccccCCCCCCceEEecC
Q 029613 160 GLLSIFSFCYYEKLIPRTCKKKI 182 (190)
Q Consensus 160 ~~~~~~~~~~~~p~~p~~~~~~~ 182 (190)
........ |+.|..|++++|.-
T Consensus 164 ~~~~~~~~-y~~~~~~~~~IDt~ 185 (211)
T 1m7g_A 164 EFTGISAP-YEAPANPEVHVKNY 185 (211)
T ss_dssp SCBTTTBC-CCCCSSCSEEEECS
T ss_pred hhhhhhhh-ccCCCCCeEEEECC
Confidence 66677777 99888899998853
No 84
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.62 E-value=4.5e-15 Score=131.57 Aligned_cols=155 Identities=34% Similarity=0.550 Sum_probs=126.0
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-CcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcce
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-KLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLIC 105 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (190)
-+.|.+++|+|++||||||+++.|+..+...| ...+.++++.+...+....++...++.++++++..+...+...+...
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~V 472 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV 472 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999999884333 44678888887766655667787777777877777777776777777
Q ss_pred eecccCccHHHHHHHHHhCCCC-CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613 106 IASLISPYRKDRDACRAMLPDS-NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI 182 (190)
Q Consensus 106 ~~~~lS~g~kqr~iarall~~~-~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~ 182 (190)
+...+++.+..|..++.++.+. .++.|+||.|...|..|..+.+++..+.+.++.+++...+ |+.|..|++++|--
T Consensus 473 I~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~-~~~p~~~dl~IDts 549 (573)
T 1m8p_A 473 IAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDP-YETPEKADLVVDFS 549 (573)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBC-CCCCSSCSEEECTT
T ss_pred EEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhcccc-ccccCCCCEEEECC
Confidence 7777888887787777776653 4566799999999999999999988888889999999999 99999999999853
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.61 E-value=5.3e-16 Score=130.32 Aligned_cols=118 Identities=12% Similarity=0.150 Sum_probs=76.8
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--------c--ccccCCChhh-------
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--------L--NKNLGFSAED------- 83 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--------~--~~~i~~~~~~------- 83 (190)
+.+||++++|++++|+|||||||||+++.|+|++ .+.+|.|.+.+.++... . +..+++.+++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 4689999999999999999999999999999988 55678899988775321 0 1123332221
Q ss_pred --HHHHHHHHHHHHH----HHHHcCcce----eecccCccHHHH-HHHHHhCCCCC--eEEEEeeCCchhhhhcCh
Q 029613 84 --RTENIRRVGEVAK----LFADAGLIC----IASLISPYRKDR-DACRAMLPDSN--FIEVFMNMPLELCEARDP 146 (190)
Q Consensus 84 --~~~~~~~~~~~~~----~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~--il~vllDEP~~~ld~~~~ 146 (190)
..+++... .... +++..+... .+..|| +|| .+||+++.+|+ ++ +|| ||+++|....
T Consensus 227 ~tv~e~l~~~-~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL--vLD-pttglD~~~~ 295 (359)
T 2og2_A 227 TVLSKAVKRG-KEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL--VLD-GNTGLNMLPQ 295 (359)
T ss_dssp HHHHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEE--EEE-GGGGGGGHHH
T ss_pred hhHHHHHHHH-HhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEE--EEc-CCCCCCHHHH
Confidence 11111110 0000 000011111 123355 677 69999999999 88 999 9999987654
No 86
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.60 E-value=8.5e-16 Score=132.26 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=98.5
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc---cccc--------
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD---NLRH-------- 71 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~---~~~~-------- 71 (190)
+++++++++.|+ +..+++++ |.+.+|++++|+||||||||||+++|+|++ +++.|.|.++|. ++..
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT-RADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEeceecHHHHHHHHhhccc
Confidence 689999999997 68899999 999999999999999999999999999987 788999999987 4432
Q ss_pred -ccccccCCChhh---HHHHHHH---HHHHHHHHHHcCc--c---eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613 72 -GLNKNLGFSAED---RTENIRR---VGEVAKLFADAGL--I---CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 72 -~~~~~i~~~~~~---~~~~~~~---~~~~~~~~~~~~~--~---~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~ 138 (190)
.+...+++..+. ...++.. +...++.+...+. . .....+|+|+ || .+| +.+|++ |
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~--------t 276 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA--------T 276 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC--------S
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc--------c
Confidence 122233343331 1111111 1112222322121 1 1245578888 55 466 888876 8
Q ss_pred hhhhhcChHHHHHHHHcCC
Q 029613 139 ELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 139 ~~ld~~~~~~~~~~~~~~~ 157 (190)
+++|+.....+.+.+++..
T Consensus 277 ~glD~~~~~~l~~ll~r~~ 295 (438)
T 2dpy_A 277 KGYPPSVFAKLPALVERAG 295 (438)
T ss_dssp SSCCTTHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 9999999999998887653
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.60 E-value=5.5e-16 Score=136.10 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=96.2
Q ss_pred cccccCcceeccCcccccccccc-ccCCccEEEEECCCCCcHHHHHHH--HHHHHhhCCCcEEEEcCcccccc---cccc
Q 029613 3 TVGNSTNIFWQESPIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFS--VNKELYSRGKLSYILDGDNLRHG---LNKN 76 (190)
Q Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~--l~g~l~~~~~g~i~~~g~~~~~~---~~~~ 76 (190)
.+++.+++.+-.++.++|+++++ .+.+|++++|+||||||||||+++ ++|++ ++++|.+++++.+.... ....
T Consensus 11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~-~~~~g~i~v~g~~~~~~~~~~~~~ 89 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-EFDEPGVFVTFEETPQDIIKNARS 89 (525)
T ss_dssp ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSCHHHHHHHHGG
T ss_pred CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEEEEeCCHHHHHHHHHH
Confidence 35777888777778999999999 999999999999999999999999 68977 66889999998774321 1223
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHcCc------ceeecccCccHHHHHHHHHhC-CCCCeEEEEeeCCchh-----hhhc
Q 029613 77 LGFSAEDRTENIRRVGEVAKLFADAGL------ICIASLISPYRKDRDACRAML-PDSNFIEVFMNMPLEL-----CEAR 144 (190)
Q Consensus 77 i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lS~g~kqr~iarall-~~~~il~vllDEP~~~-----ld~~ 144 (190)
+++..++.... .. +..... ......+........++.++. .+|+++ +||||++. +|+.
T Consensus 90 ~g~~~q~~~~~----~~----l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~l--ilDe~t~~~~~~~lD~~ 159 (525)
T 1tf7_A 90 FGWDLAKLVDE----GK----LFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRV--SIDSVTSVFQQYDASSV 159 (525)
T ss_dssp GTCCHHHHHHT----TS----EEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEE--EEECSTTTSTTTCCHHH
T ss_pred cCCChHHhhcc----Cc----EEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEE--EECCHHHHHHhcCCHHH
Confidence 45555543210 00 000000 000111222222224666664 578998 99999985 4777
Q ss_pred ChHHHHHHHHcCCCCCcc
Q 029613 145 DPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ 162 (190)
.++.+++.++..+..|.+
T Consensus 160 ~~~~l~~ll~~l~~~g~t 177 (525)
T 1tf7_A 160 VRRELFRLVARLKQIGAT 177 (525)
T ss_dssp HHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHCCCE
Confidence 788888777754334433
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.59 E-value=1.8e-15 Score=132.89 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=82.6
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccc---ccCCChhhHHHHHHHHHHHHHHHHH
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNK---NLGFSAEDRTENIRRVGEVAKLFAD 100 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
+..+.+|++++|+|+||||||||++.++|...+.+...+++..++....+.. .+++. ... +..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~-------------~~~-~~~ 340 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD-------------FEE-MER 340 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC-------------HHH-HHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC-------------HHH-HHh
Confidence 5589999999999999999999999999987433332345544432111000 01111 011 112
Q ss_pred cCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhc-----ChHHHHHHHHcCCCCCc
Q 029613 101 AGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEAR-----DPKGLYKLARAGKIKGL 161 (190)
Q Consensus 101 ~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~-----~~~~~~~~~~~~~~~~~ 161 (190)
.+... .+..+|+|++|| .+++++..+|+++ ++| |+++||.. .++.+++.++..+..|.
T Consensus 341 ~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll--ilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 341 QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI--AID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE--EEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE--EEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 33332 256799999999 5999999999999 999 99999998 77777777765433443
No 89
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.58 E-value=1.2e-15 Score=117.50 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=82.5
Q ss_pred CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh----hCCCcEEEE------cC-ccc
Q 029613 1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY----SRGKLSYIL------DG-DNL 69 (190)
Q Consensus 1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~----~~~~g~i~~------~g-~~~ 69 (190)
|+ +++++|+++.|+ ..++++ |.+.+|..++|+|+||||||||++.|+|... .+..|.+.+ ++ ..+
T Consensus 1 m~-~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 1 MT-NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp -----------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred Cc-chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 54 689999999997 467877 8999999999999999999999999998541 234444322 11 111
Q ss_pred ccccccccCCCh--------hhHHHHHHHH------------------------HHHHHHHHHcCcce-----eecccCc
Q 029613 70 RHGLNKNLGFSA--------EDRTENIRRV------------------------GEVAKLFADAGLIC-----IASLISP 112 (190)
Q Consensus 70 ~~~~~~~i~~~~--------~~~~~~~~~~------------------------~~~~~~~~~~~~~~-----~~~~lS~ 112 (190)
.. ..|+.. +........+ .++..++...+... ....+|+
T Consensus 77 ~D----t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 77 VD----LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp EE----CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred EE----CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 10 001100 0000000000 01222222333321 2455899
Q ss_pred cHHHH--HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 113 YRKDR--DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 113 g~kqr--~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+++|+ ..+++++.++..+ ++|||+|++|....+.+++.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~--~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGD--VQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSC--EEEEECBTTTTBSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCC--CceEEEeecCCCCHHHHHHHHHH
Confidence 99988 4888988888877 89999999999999999988875
No 90
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.57 E-value=4.8e-15 Score=124.02 Aligned_cols=140 Identities=19% Similarity=0.036 Sum_probs=94.4
Q ss_pred ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----------
Q 029613 4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---------- 72 (190)
Q Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---------- 72 (190)
+++.+++++.|+ +..+++++ |.+.+|++++|+|+||||||||+++|+|.+ .++.|.+.+.|++....
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA-SADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC-CCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 689999999997 78899999 999999999999999999999999999987 67888888887652110
Q ss_pred -cccccCC------ChhhHHHHHHHHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613 73 -LNKNLGF------SAEDRTENIRRVGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 73 -~~~~i~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~ 139 (190)
+...+.+ .+..+.........+++.+...+.. ..+..+|+++ |+ .+| +.+|++ ++
T Consensus 123 ~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--------t~ 190 (347)
T 2obl_A 123 TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--------RG 190 (347)
T ss_dssp HHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--------BT
T ss_pred hhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--------cc
Confidence 0000111 1111111111111223333322221 2255678888 55 455 577765 88
Q ss_pred hhhhcChHHHHHHHHcCC
Q 029613 140 LCEARDPKGLYKLARAGK 157 (190)
Q Consensus 140 ~ld~~~~~~~~~~~~~~~ 157 (190)
++|+.....+.+.+++..
T Consensus 191 Gldp~~~~~l~~ller~~ 208 (347)
T 2obl_A 191 GFPPSVFSSLPKLLERAG 208 (347)
T ss_dssp TBCHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999998887754
No 91
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.56 E-value=2.7e-16 Score=117.86 Aligned_cols=64 Identities=17% Similarity=0.043 Sum_probs=57.3
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
+...+++++|+...+++++||++++|++++|+||||||||||+|+|+|.+ +.+|.|.++|.++.
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV 71 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence 45667889998888999999999999999999999999999999999987 56788888887764
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.56 E-value=5.9e-15 Score=116.47 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=44.4
Q ss_pred ccccCcceeccCcccccccccc-ccCCccEEEEECCCCCcHHHHHHHHH--HHHhhCCCcEEEEcCccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFSVN--KELYSRGKLSYILDGDNL 69 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~l~--g~l~~~~~g~i~~~g~~~ 69 (190)
|+++++++..+. .++.+-- .+++|++++|+||||||||||+++|+ +.+ .++.+.+++.++..
T Consensus 6 ~~~~~~i~tg~~---~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 6 YQPVRRVKSGIP---GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEER 70 (251)
T ss_dssp --CCCEECCSCT---TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSC
T ss_pred ccccceeecCCH---hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEccCC
Confidence 567777766654 3444411 78999999999999999999999999 543 45566677766543
No 93
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.54 E-value=1.2e-15 Score=121.46 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=62.6
Q ss_pred ccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-----CCcEEEEcCccccccc------c---cccC
Q 029613 13 QESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-----GKLSYILDGDNLRHGL------N---KNLG 78 (190)
Q Consensus 13 ~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-----~~g~i~~~g~~~~~~~------~---~~i~ 78 (190)
+.+.+.+++++||++++|++++|+||||||||||+++|+|.+... .....++..+.+...+ . ....
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~ 87 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYN 87 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCC
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCC
Confidence 345678999999999999999999999999999999999976211 0111133322332110 0 0011
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhh
Q 029613 79 FSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCE 142 (190)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld 142 (190)
+...+.. ....+.+....+. ......+..+|+|++||. + ++++.+|+++ ++|||....+
T Consensus 88 ~~~~~~~-~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~l--ilDg~~~~~~ 147 (245)
T 2jeo_A 88 FDHPDAF-DNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVV--LFEGILVFYS 147 (245)
T ss_dssp TTSGGGB-CHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEE--EEECTTTTTS
T ss_pred CCCcccc-cHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEE--EEeCcccccc
Confidence 1111100 0111111111121 233345677999999984 5 5778889999 9999987643
No 94
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.54 E-value=5.7e-17 Score=131.40 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=57.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccCCChhhH--------------------HHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLGFSAEDR--------------------TENIRR 90 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~~~~~~~--------------------~~~~~~ 90 (190)
.++|+||||||||||+++|+|+. .+.+|.+.++|.++... ....+++..++. ......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~-~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ-VSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-C------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 58999999999999999999987 77889998888654221 011112222110 000001
Q ss_pred HHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613 91 VGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGL 149 (190)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~ 149 (190)
+.. .....-....+..+|+||+|| .+||+++. ++ +||||+++|++.+.+.+
T Consensus 83 i~~---~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---ll--lldep~~gL~~lD~~~l 134 (270)
T 3sop_A 83 IEK---YINEQYEKFLKEEVNIARKKRIPDTRVHCC---LY--FISPTGHSLRPLDLEFM 134 (270)
T ss_dssp HHH---HHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EE--EECCCSSSCCHHHHHHH
T ss_pred HHH---HHHHHHHhhhHHhcCcccchhhhhheeeee---eE--EEecCCCcCCHHHHHHH
Confidence 111 111000112345799999999 59998764 77 99999999988774433
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.51 E-value=7.4e-15 Score=133.84 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=76.9
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHH
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEV 94 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 94 (190)
++..++++++|+ |++++|+|||||||||++|+|+|+...+..|.+.- .. ...+++.++
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-a~------~~~i~~v~~------------ 621 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-AE------EAHLPLFDG------------ 621 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-SS------EEEECCCSE------------
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-hh------ccceeeHHH------------
Confidence 345688999999 99999999999999999999999863234443221 10 111233221
Q ss_pred HHHHHHcCcce-eecccCccHHHH-HHHHHh--CCCCCeEEEEeeCC---chhhhhcCh-HHHHHHHHc
Q 029613 95 AKLFADAGLIC-IASLISPYRKDR-DACRAM--LPDSNFIEVFMNMP---LELCEARDP-KGLYKLARA 155 (190)
Q Consensus 95 ~~~~~~~~~~~-~~~~lS~g~kqr-~iaral--l~~~~il~vllDEP---~~~ld~~~~-~~~~~~~~~ 155 (190)
++...++.+ +...+|.+++++ .+++++ +.+|+++ +|||| |+++|.... ..+.+.+.+
T Consensus 622 --i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~Ll--LLDEpgrGTs~lD~~~~~~~i~~~L~~ 686 (765)
T 1ewq_A 622 --IYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLV--LLDEVGRGTSSLDGVAIATAVAEALHE 686 (765)
T ss_dssp --EEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEE--EEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred --hhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEE--EEECCCCCCCCcCHHHHHHHHHHHHHh
Confidence 011112111 122367788888 588888 9999999 99999 999998765 457766665
No 96
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.50 E-value=1.7e-14 Score=117.52 Aligned_cols=123 Identities=14% Similarity=0.031 Sum_probs=70.0
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc--EEEEcCcccccccccc-----cCCChhh---HH
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL--SYILDGDNLRHGLNKN-----LGFSAED---RT 85 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g--~i~~~g~~~~~~~~~~-----i~~~~~~---~~ 85 (190)
+.++|+++++.+++|++++|+|+||||||||++.|++.+. +.+| .+++.++.-....... .+..... ..
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~ 99 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLK 99 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccc
Confidence 3568999999999999999999999999999999999884 3334 4455543211100000 0111000 00
Q ss_pred -HHHH--HHHHH-HHHHHHcCc--ceeecccCccH-HHHHHHHHhCCCCCeEEEEeeCCchhh
Q 029613 86 -ENIR--RVGEV-AKLFADAGL--ICIASLISPYR-KDRDACRAMLPDSNFIEVFMNMPLELC 141 (190)
Q Consensus 86 -~~~~--~~~~~-~~~~~~~~~--~~~~~~lS~g~-kqr~iarall~~~~il~vllDEP~~~l 141 (190)
..+. ...+. ..++....+ ...+..++.++ +|+..++++..+|+++ ++|||++.+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~ll--ilDept~~~ 160 (296)
T 1cr0_A 100 REIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVI--ILDHISIVV 160 (296)
T ss_dssp HHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEE--EEEEEC---
T ss_pred cCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEE--EEcCccccC
Confidence 0000 00111 111211122 11123466666 5555688899999999 999999944
No 97
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.50 E-value=6.1e-15 Score=137.98 Aligned_cols=129 Identities=13% Similarity=-0.051 Sum_probs=80.4
Q ss_pred ccccCc-----ceecc-CccccccccccccCC-------ccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcc-
Q 029613 4 VGNSTN-----IFWQE-SPIGRLERQKLLNQK-------GCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDN- 68 (190)
Q Consensus 4 ~l~~~~-----l~~~~-~~~~~l~~~sl~i~~-------Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~- 68 (190)
+|++++ +++.| ++..++++++|.+.+ |++++|+|||||||||++|++ |++.. ...|.+......
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~ 828 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCR 828 (1022)
T ss_dssp CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEE
T ss_pred eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCC
Confidence 678888 88888 667899999999987 999999999999999999999 87731 123322222110
Q ss_pred --cccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcCh
Q 029613 69 --LRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDP 146 (190)
Q Consensus 69 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~ 146 (190)
+...+...++.. +.+. .-...++.++++..+|++++.+|+++ +||||++++|+.+.
T Consensus 829 l~v~d~I~~rig~~-----d~~~---------------~~~stf~~em~~~a~al~la~~~sLl--LLDEp~~Gtd~~dg 886 (1022)
T 2o8b_B 829 LTPIDRVFTRLGAS-----DRIM---------------SGESTFFVELSETASILMHATAHSLV--LVDELGRGTATFDG 886 (1022)
T ss_dssp ECCCSBEEEECC-----------------------------CHHHHHHHHHHHHHHHCCTTCEE--EEECTTTTSCHHHH
T ss_pred CCHHHHHHHHcCCH-----HHHh---------------hchhhhHHHHHHHHHHHHhCCCCcEE--EEECCCCCCChHHH
Confidence 000000011110 0000 01123456666667999999999999 99999999998874
Q ss_pred -HHHHHHHHc
Q 029613 147 -KGLYKLARA 155 (190)
Q Consensus 147 -~~~~~~~~~ 155 (190)
..+++.++.
T Consensus 887 ~~~~~~il~~ 896 (1022)
T 2o8b_B 887 TAIANAVVKE 896 (1022)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 334555543
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.49 E-value=2.8e-14 Score=111.17 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=43.6
Q ss_pred cccCcceeccCccccccccc-cccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C-----CCcEEEEcCcc
Q 029613 5 GNSTNIFWQESPIGRLERQK-LLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R-----GKLSYILDGDN 68 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~s-l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~-----~~g~i~~~g~~ 68 (190)
++++.++..+. .|+.+- =.+++|++++|+||||||||||+++|+|.+.. + +.+.++++++.
T Consensus 2 ~~~~~i~tG~~---~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 2 ATIGRISTGSK---SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp CCCCEECCSCH---HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcCCccCCCCh---hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 45666655443 333322 37899999999999999999999999997632 2 34477777654
No 99
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.49 E-value=4e-15 Score=115.42 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=25.5
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+++++ .++++|++++|+||||||||||+|+|+|++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456777 799999999999999999999999999987
No 100
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.49 E-value=1.1e-13 Score=116.19 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=44.4
Q ss_pred ec-ccCccHHHH-HHHHHhC---------CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 107 AS-LISPYRKDR-DACRAML---------PDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 107 ~~-~lS~g~kqr-~iarall---------~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+. .+|+||+|+ .+|++++ .+|+++ +|||||++||+..++.+++.+.+..
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iL--LLDEp~s~LD~~~~~~l~~~l~~~~ 321 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVL--LLDDFTAELDPHRRQYLLDLAASVP 321 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEE--EECCGGGCCCHHHHHHHHHHHHHSS
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEE--EEeCccccCCHHHHHHHHHHHHhcC
Confidence 44 699999999 6999999 899999 9999999999999999999998743
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.48 E-value=6.8e-15 Score=136.11 Aligned_cols=115 Identities=15% Similarity=0.063 Sum_probs=73.5
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----cccccCCChhhHHHHHHHH
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNLGFSAEDRTENIRRV 91 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i~~~~~~~~~~~~~~ 91 (190)
+..++++++|++++|++++|+|||||||||++|+++++......|. ++........ +-..++ ..+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-~vpa~~~~i~~~d~i~~~ig-----~~d~---- 728 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS-YVPAEEATIGIVDGIFTRMG-----AADN---- 728 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-CBSSSEEEEECCSEEEEEC--------------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc-cccchhhhhhHHHHHHHhCC-----hHHH----
Confidence 4568899999999999999999999999999999987642111111 1111100000 000000 0000
Q ss_pred HHHHHHHHHcCcceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHH-HHHH
Q 029613 92 GEVAKLFADAGLICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLY-KLAR 154 (190)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~-~~~~ 154 (190)
+......+|++++|+. ++++ +.+|+++ +||||++++|+.+...+. +.++
T Consensus 729 -----------l~~~~stfs~em~~~~~il~~-a~~p~Ll--LLDEP~~GlD~~~~~~i~~~il~ 779 (918)
T 3thx_B 729 -----------IYKGRSTFMEELTDTAEIIRK-ATSQSLV--ILDELGRGTSTHDGIAIAYATLE 779 (918)
T ss_dssp ----------------CCHHHHHHHHHHHHHH-CCTTCEE--EEESTTTTSCHHHHHHHHHHHHH
T ss_pred -----------HHHhHHHhhHHHHHHHHHHHh-ccCCCEE--EEeCCCCCCCHHHHHHHHHHHHH
Confidence 0011345678888885 6666 8899999 999999999999877765 4443
No 102
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.47 E-value=3.9e-13 Score=111.89 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=43.6
Q ss_pred ecccCccHHH------H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 107 ASLISPYRKD------R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 107 ~~~lS~g~kq------r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+..+|+||+| | ++|++++.+|+++ +|||||++||+..+..+++.+++-.
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~l--llDEp~~~LD~~~~~~l~~~l~~~~ 301 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLL--ILDEPTPYLDEERRRKLITIMERYL 301 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEE--EEECCCTTCCHHHHHHHHHHHHHTG
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEE--EEECCCCCCCHHHHHHHHHHHHHHH
Confidence 5679999999 4 5889999999999 9999999999999999999887643
No 103
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.45 E-value=1.6e-12 Score=114.66 Aligned_cols=154 Identities=43% Similarity=0.706 Sum_probs=110.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA 107 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (190)
+.+.+++|+|++||||||+++.|+..+...|....+++++.+...+....+|...++..++..+..+...+...+...+.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~ 449 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVIC 449 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45789999999999999999999987755555567888887765554445666666665555555444444455655555
Q ss_pred cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613 108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI 182 (190)
Q Consensus 108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~ 182 (190)
...+..+..|..++.++.+++++.|+||.|...+-.|..+..+...+.+.++.+.++... |++|..|+++||--
T Consensus 450 d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~-~e~~~~adivIDts 523 (546)
T 2gks_A 450 ALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDP-YEPPVAPEVRVDTT 523 (546)
T ss_dssp ECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBC-CCCCSSCSEEEETT
T ss_pred EcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhc-cccccCCcEEEECC
Confidence 555666777777888887777666799999999998887777765445667777788888 99888999999863
No 104
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.44 E-value=2e-13 Score=114.60 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=68.6
Q ss_pred cccccccc-------ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHH
Q 029613 18 GRLERQKL-------LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRR 90 (190)
Q Consensus 18 ~~l~~~sl-------~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 90 (190)
..++++++ ...+|++++|+||||||||||+++|+|.+.+...+.+...++++........++..+.
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~------- 176 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQR------- 176 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE-------
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeee-------
Confidence 44566665 6788899999999999999999999998854435656554444321111000000000
Q ss_pred HHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 91 VGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
... .....-...++++|..+|+++ ++|||+ |....+.+.+....|+
T Consensus 177 --------------~~~--~~~~~~~~~La~aL~~~Pdvi--llDEp~---d~e~~~~~~~~~~~G~ 222 (356)
T 3jvv_A 177 --------------EVH--RDTLGFSEALRSALREDPDII--LVGEMR---DLETIRLALTAAETGH 222 (356)
T ss_dssp --------------EBT--TTBSCHHHHHHHHTTSCCSEE--EESCCC---SHHHHHHHHHHHHTTC
T ss_pred --------------eec--cccCCHHHHHHHHhhhCcCEE--ecCCCC---CHHHHHHHHHHHhcCC
Confidence 000 000011127999999999999 999999 3444455555555544
No 105
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.43 E-value=7.1e-14 Score=129.63 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=68.0
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA 95 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 95 (190)
...++++++|++.+|++++|+|||||||||++|+++....-...|.. +...... ++....
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~-vpa~~~~------~~~~d~------------- 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF-VPCESAE------VSIVDC------------- 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC-BSEEEEE------EECCSE-------------
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc-ccccccc------chHHHH-------------
Confidence 34678899999999999999999999999999999544321111110 0000000 000000
Q ss_pred HHHHHcCcc-eeecccCccHHHH-HHHHHh--CCCCCeEEEEeeCCchhhhhcChHHH-HHHHH
Q 029613 96 KLFADAGLI-CIASLISPYRKDR-DACRAM--LPDSNFIEVFMNMPLELCEARDPKGL-YKLAR 154 (190)
Q Consensus 96 ~~~~~~~~~-~~~~~lS~g~kqr-~iaral--l~~~~il~vllDEP~~~ld~~~~~~~-~~~~~ 154 (190)
++...+.. .....+|.++.++ .+++++ +.+|+++ +||||++++|+.+...+ ++.++
T Consensus 708 -i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLl--LLDEp~~GlD~~~~~~i~~~il~ 768 (934)
T 3thx_A 708 -ILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLI--IIDELGRGTSTYDGFGLAWAISE 768 (934)
T ss_dssp -EEEECC---------CHHHHHHHHHHHHHHHCCTTCEE--EEESCSCSSCHHHHHHHHHHHHH
T ss_pred -HHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEE--EEeCCCCCCCHHHHHHHHHHHHH
Confidence 00001110 0112345655555 355555 8999999 99999999999887666 44433
No 106
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.40 E-value=3.7e-14 Score=121.35 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=53.6
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.+.++++.+.|+...+++++ +. .+|++++|+||||||||||+++|+|.+ .+.+|.|.+.++++
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPI 205 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSC
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEecccc
Confidence 46778888888777789998 54 899999999999999999999999988 56678888877665
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.39 E-value=4.2e-13 Score=104.34 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=40.1
Q ss_pred cccccccccc-ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 16 PIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 16 ~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
+.+.|+++.. .+.+|++++|+||||||||||++.|++.+.+.+...++++
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4678899998 8999999999999999999999999987743333333443
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.39 E-value=1.1e-14 Score=112.13 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=70.7
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChhhHHHHHHHHHHHHHHHHHc------
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAEDRTENIRRVGEVAKLFADA------ 101 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 101 (190)
|++++|+||||||||||+++|+|.+ + .+| +.++|..... .....+++..++.......+..+ .+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~-~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~--~~~~~~~~~~~ 75 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL-K-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV--GLEPPPGKREC 75 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH-H-HTT-CCCEEEECCEEETTSSEEEEEEEETTSCEEEEEEC--CCCCCSSSCCE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc-c-cCC-EEEcCEecchhHhhhceEEEEEEecccceehhhcc--cccCCcccccc
Confidence 7899999999999999999999988 4 567 7777654421 11222333333210000000000 00000
Q ss_pred CcceeecccCccHHHH--HHHH---HhCCCCCeEEEEeeC--CchhhhhcChHHHHHHHHc
Q 029613 102 GLICIASLISPYRKDR--DACR---AMLPDSNFIEVFMNM--PLELCEARDPKGLYKLARA 155 (190)
Q Consensus 102 ~~~~~~~~lS~g~kqr--~iar---all~~~~il~vllDE--P~~~ld~~~~~~~~~~~~~ 155 (190)
.+..+...+|++++++ .+.+ |++.+|+++ +||| |++.+|....+.+.+.+..
T Consensus 76 ~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvl--ilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 76 RVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVC--VIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp ESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCE--EECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred ccceEEEcchHHHHHHHHHHhhhhHhhccCCCEE--EEeCCCccccccHHHHHHHHHHHhC
Confidence 0111233467777766 2344 578899999 9999 8888877766777766664
No 109
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.37 E-value=5.7e-13 Score=112.41 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=62.2
Q ss_pred cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHH
Q 029613 19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLF 98 (190)
Q Consensus 19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (190)
++++++ +++|++++|+|||||||||++++|+|.+.+..+|.|.+.++++.......+++..+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--------------- 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--------------- 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence 455544 789999999999999999999999998843337888766655432122222222221
Q ss_pred HHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCc
Q 029613 99 ADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPL 138 (190)
Q Consensus 99 ~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~ 138 (190)
..+.. +..+ ...+++++..+|+++ ++|||+
T Consensus 190 -~~g~~--~~~~-----~~~l~~~L~~~pd~i--lldE~~ 219 (372)
T 2ewv_A 190 -EVGED--TKSF-----ADALRAALREDPDVI--FVGEMR 219 (372)
T ss_dssp -EBTTT--BSCS-----HHHHHHHTTSCCSEE--EESCCC
T ss_pred -ecCCC--HHHH-----HHHHHHHhhhCcCEE--EECCCC
Confidence 01110 1111 236899999999999 999998
No 110
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.37 E-value=2.9e-13 Score=123.94 Aligned_cols=115 Identities=15% Similarity=0.060 Sum_probs=70.0
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh-----hHHHHHH
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE-----DRTENIR 89 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~-----~~~~~~~ 89 (190)
+...++++++|+ ++|++++|+|||||||||++|+|+|+......|.. +.... ..+++..+ ...+++.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~------~~i~~~~~i~~~~~~~d~l~ 664 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQK------VEIGPIDRIFTRVGAADDLA 664 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSE------EEECCCCEEEEEEC------
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhc------ccceeHHHHHhhCCHHHHHH
Confidence 345688999999 99999999999999999999999997532222211 11110 01111111 0011110
Q ss_pred HHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHH-HHHHH
Q 029613 90 RVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGL-YKLAR 154 (190)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~-~~~~~ 154 (190)
. + ...++.++++...+...+.+|+++ +||||++++|+.+...+ ++.++
T Consensus 665 ~-----------~----~stf~~e~~~~~~il~~a~~psLl--LLDEp~~Gtd~~d~~~i~~~ll~ 713 (800)
T 1wb9_A 665 S-----------G----RSTFMVEMTETANILHNATEYSLV--LMDEIGRGTSTYDGLSLAWACAE 713 (800)
T ss_dssp --------------------CHHHHHHHHHHHHHCCTTEEE--EEESCCCCSSSSHHHHHHHHHHH
T ss_pred h-----------h----hhhhhHHHHHHHHHHHhccCCCEE--EEECCCCCCChhHHHHHHHHHHH
Confidence 0 0 112345555555555668999999 99999888888776654 44444
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.9e-14 Score=121.96 Aligned_cols=47 Identities=23% Similarity=0.015 Sum_probs=38.2
Q ss_pred CcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 2 ATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+++++|+++.|+.+.++++++|.+ +|+|+||||||||+++|+|..
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCC
T ss_pred cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCC
Confidence 34789999999999999999999997 999999999999999999965
No 112
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.33 E-value=2.2e-14 Score=117.72 Aligned_cols=51 Identities=24% Similarity=0.102 Sum_probs=22.2
Q ss_pred CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHH-HhhCCCcEEEEcC
Q 029613 8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE-LYSRGKLSYILDG 66 (190)
Q Consensus 8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~-l~~~~~g~i~~~g 66 (190)
+|+++.|+.+.++++++|++ +|+|+||||||||++.|.|. + .+.+| +.++|
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g 53 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERV-ISGAA 53 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC---------------
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCC
Confidence 57899999999999999988 99999999999999999986 4 34444 44333
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.32 E-value=5.1e-13 Score=112.12 Aligned_cols=125 Identities=14% Similarity=0.017 Sum_probs=71.4
Q ss_pred cccccccccCC--ccEEEEECCCCCcHHHHHHHHHHHHhhCCC----cEEEEc----CcccccccccccCCChhhHHHHH
Q 029613 19 RLERQKLLNQK--GCVVWITGLSGSGKSTLAFSVNKELYSRGK----LSYILD----GDNLRHGLNKNLGFSAEDRTENI 88 (190)
Q Consensus 19 ~l~~~sl~i~~--Geii~L~G~nGsGKSTLlr~l~g~l~~~~~----g~i~~~----g~~~~~~~~~~i~~~~~~~~~~~ 88 (190)
+.+.+++.+.+ |+.++|+|+||||||||+++|+|++ .+.. |.++++ +.++ .+...+. ..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~-~~~~~~e~G~i~i~~~~~~~~~--------~~~~~~~-~~I 226 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF-NTTSAWEYGREFVFEKLGGDEQ--------AMQYSDY-PQM 226 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT-TCEEECCTTHHHHHHSSSSCTT--------SSCTTTH-HHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh-CCCcchhhHHHHHHhhcCCCcc--------cCChhHH-HHH
Confidence 35679999999 9999999999999999999999987 5555 555542 2221 1222222 122
Q ss_pred HHHHHHHHHHHH--cCccee---------ecccCccHHHHH-HHHHh-CCCCCeEEEEeeC---Cc------hhhhhcCh
Q 029613 89 RRVGEVAKLFAD--AGLICI---------ASLISPYRKDRD-ACRAM-LPDSNFIEVFMNM---PL------ELCEARDP 146 (190)
Q Consensus 89 ~~~~~~~~~~~~--~~~~~~---------~~~lS~g~kqr~-iaral-l~~~~il~vllDE---P~------~~ld~~~~ 146 (190)
..+.+-...+.. .....+ +...+.+.+++. +++++ ..+|+++ +||| |+ .++|++.+
T Consensus 227 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ll--lLdE~~~p~~~~g~~~sld~~~r 304 (365)
T 1lw7_A 227 ALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVT--ILLKNNTEWVDDGLRSLGSQKQR 304 (365)
T ss_dssp HHHHHHHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEE--EEEECCCC-----------CCSH
T ss_pred HHHHHHHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEE--EECCCCCCcccCCCcCCccHHHH
Confidence 222211111111 111111 111223334444 55544 3588998 9999 65 47899999
Q ss_pred HHHHHHHHc
Q 029613 147 KGLYKLARA 155 (190)
Q Consensus 147 ~~~~~~~~~ 155 (190)
..+...+++
T Consensus 305 ~~l~~~l~~ 313 (365)
T 1lw7_A 305 QQFQQLLKK 313 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888743
No 114
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=6.3e-12 Score=107.51 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=83.2
Q ss_pred cccCcceeccCccccccccccccCCccE--EEEECCCCCcHHHHHHHHHHHHh---hCC---Cc------EEEEcCcccc
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCV--VWITGLSGSGKSTLAFSVNKELY---SRG---KL------SYILDGDNLR 70 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Gei--i~L~G~nGsGKSTLlr~l~g~l~---~~~---~g------~i~~~g~~~~ 70 (190)
+++++ ++.|++.+ ++++||++++|++ ++|+|+||||||||+++|+|... ... .+ .+.+....+.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CE
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccc
Confidence 56777 89998888 9999999999999 99999999999999999999631 000 11 0111211111
Q ss_pred --cccccccCCChh--h---HHHHHHHHH-HHHHHHHHc-Ccc------------eeeccc-----CccHHHHHHHHHhC
Q 029613 71 --HGLNKNLGFSAE--D---RTENIRRVG-EVAKLFADA-GLI------------CIASLI-----SPYRKDRDACRAML 124 (190)
Q Consensus 71 --~~~~~~i~~~~~--~---~~~~~~~~~-~~~~~~~~~-~~~------------~~~~~l-----S~g~kqr~iarall 124 (190)
..+...+++... . .......+. ++...+... +.. ..+..+ +....+.++++++.
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~ 174 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD 174 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 111122233211 0 111111111 222222222 111 011111 12223457999999
Q ss_pred CCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 125 PDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
...+++ ++|+|++.|.+.....+.+.+++
T Consensus 175 ~~~~vI--~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 175 SKVNII--PIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp SCSEEE--EEESCGGGSCHHHHHHHHHHHHH
T ss_pred hCCCEE--EEEcchhccchHHHHHHHHHHHH
Confidence 888998 99999999988888888888875
No 115
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.31 E-value=5.5e-14 Score=125.48 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=69.3
Q ss_pred ccccCcceeccCcc--cccccc----------ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 4 VGNSTNIFWQESPI--GRLERQ----------KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 4 ~l~~~~l~~~~~~~--~~l~~~----------sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
++++.|+++.|+.. ++++.+ +++++. ++|+|+||||||||+++|+|++.+.++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 46788999999642 344333 355544 999999999999999999997633379999999877521
Q ss_pred -------ccccccCCChhhH-----HHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC-
Q 029613 72 -------GLNKNLGFSAEDR-----TENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP- 137 (190)
Q Consensus 72 -------~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP- 137 (190)
..+..++|.+++. ......+......+...+. ..| ++. .++.+....|+++ ++|||
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~-----~~s---~~~i~l~i~~~~~p~Ll--LlDePG 156 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGM-----GIS---HELITLEISSRDVPDLT--LIDLPG 156 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSS-----CCC---SCCEEEEEEESSSCCEE--EEECCC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCcc-----ccc---hHHHHHHhcCCCCCcee--EeeCCC
Confidence 2334456655431 0101111111111111110 001 011 1223334578888 99999
Q ss_pred -----chhhhhcChHHHHHHHHc
Q 029613 138 -----LELCEARDPKGLYKLARA 155 (190)
Q Consensus 138 -----~~~ld~~~~~~~~~~~~~ 155 (190)
|+++|+...+.+.+++++
T Consensus 157 i~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 157 ITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp ------CCSSCSHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHH
Confidence 999999888888888776
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.31 E-value=7e-13 Score=111.38 Aligned_cols=123 Identities=13% Similarity=0.010 Sum_probs=78.9
Q ss_pred ccCcceec---cCc--cccc---------cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-cc
Q 029613 6 NSTNIFWQ---ESP--IGRL---------ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LR 70 (190)
Q Consensus 6 ~~~~l~~~---~~~--~~~l---------~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~ 70 (190)
++++++++ |+. ..++ ++++|.+++|++++|+||||||||||+++|+|++ ++.+|.|.++|.. +.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~~e~~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDVPELF 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESSSCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCccccC
Confidence 67788877 753 2344 9999999999999999999999999999999977 6789999998642 11
Q ss_pred cc-cccccCCCh-hhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613 71 HG-LNKNLGFSA-EDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK 147 (190)
Q Consensus 71 ~~-~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~ 147 (190)
.. ....+++.. ++.. . ..+++..++ .++.++...|+.+ +++|+.... ..
T Consensus 216 ~~~~~~~v~~v~~q~~~--~--------------------~~~~~~t~~~~i~~~l~~~pd~~--l~~e~r~~~----~~ 267 (361)
T 2gza_A 216 LPDHPNHVHLFYPSEAK--E--------------------EENAPVTAATLLRSCLRMKPTRI--LLAELRGGE----AY 267 (361)
T ss_dssp CTTCSSEEEEECC--------------------------------CCHHHHHHHHTTSCCSEE--EESCCCSTH----HH
T ss_pred ccccCCEEEEeecCccc--c--------------------ccccccCHHHHHHHHHhcCCCEE--EEcCchHHH----HH
Confidence 10 111122222 1100 0 001233455 4777777888888 899987531 22
Q ss_pred HHHHHHHcCC
Q 029613 148 GLYKLARAGK 157 (190)
Q Consensus 148 ~~~~~~~~~~ 157 (190)
.+.+.+..|+
T Consensus 268 ~~l~~l~~g~ 277 (361)
T 2gza_A 268 DFINVAASGH 277 (361)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 3444455554
No 117
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.31 E-value=3.3e-13 Score=112.44 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=58.5
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
+++++++++.|+...++++++|++.+|++++|+|+||||||||+++|+|.+ .+..|.+.+.+.++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEEECG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEEEEcC
Confidence 578999999998888999999999999999999999999999999999988 55677888777655
No 118
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.31 E-value=1.5e-11 Score=99.29 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=64.0
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC----------Cc-EEEEcCcccccccccccCCChhhHHHHHHHHH--
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG----------KL-SYILDGDNLRHGLNKNLGFSAEDRTENIRRVG-- 92 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~----------~g-~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~-- 92 (190)
.+.+|++++|+||||||||||++.+++.+ ..+ .+ .+++..++.. ......+..+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~-~~g~~~~g~~~~~~~~v~~~~~e~~~-----------~~~~~r~~~~g~~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI-AGGPDLLEVGELPTGPVIYLPAEDPP-----------TAIHHRLHALGAH 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH-HTCCCTTCCCCCCCCCEEEEESSSCH-----------HHHHHHHHHHHTT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH-hcCCCcCCCccCCCccEEEEECCCCH-----------HHHHHHHHHHHhh
Confidence 57899999999999999999999999977 443 11 2233322211 11111111111
Q ss_pred ----HHHHHHHHcCcce----eecccCccHHHHHHHHHhCCCCCeEEEEeeCCch--hhhhcCh
Q 029613 93 ----EVAKLFADAGLIC----IASLISPYRKDRDACRAMLPDSNFIEVFMNMPLE--LCEARDP 146 (190)
Q Consensus 93 ----~~~~~~~~~~~~~----~~~~lS~g~kqr~iarall~~~~il~vllDEP~~--~ld~~~~ 146 (190)
....++....+.. .+..+|+++.++ +++++.+|+++ ++|||++ ++|....
T Consensus 94 ~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~--i~~l~~~~~li--vlDe~~~~~~~d~~~~ 153 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQPLIGSLPNIMAPEWFDG--LKRAAEGRRLM--VLDTLRRFHIEEENAS 153 (279)
T ss_dssp SCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHH--HHHHHTTCSEE--EEECGGGGCCSCTTCH
T ss_pred cChhhhhhccCceEEeecCCCCcccCCHHHHHH--HHHhcCCCCEE--EECCHHHhcCCCcCch
Confidence 0111223333322 255678887554 56677789999 9999999 7876554
No 119
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.31 E-value=4.1e-12 Score=103.98 Aligned_cols=125 Identities=18% Similarity=0.094 Sum_probs=79.4
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHH
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRT 85 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~ 85 (190)
..+++++.|+... ++++|+ +|++++++|+||+||||+++.|++.+. +..+.+.+.+.++.... ..
T Consensus 78 ~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~~~~----------~~ 142 (295)
T 1ls1_A 78 VYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPA----------AR 142 (295)
T ss_dssp HHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSSCHH----------HH
T ss_pred HHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcccHh----------HH
Confidence 3456777776543 788888 999999999999999999999999884 44566666655543211 00
Q ss_pred HHHHHHHHHHHHHHHcCcceeec--ccCccHHHH-HHHHHhCCCCCeEEEEeeCC-chhhhhcChHHHHHHH
Q 029613 86 ENIRRVGEVAKLFADAGLICIAS--LISPYRKDR-DACRAMLPDSNFIEVFMNMP-LELCEARDPKGLYKLA 153 (190)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~--~lS~g~kqr-~iarall~~~~il~vllDEP-~~~ld~~~~~~~~~~~ 153 (190)
+.+. ......++..++. ...+..-++ .++.+...+++++ ++|+| +.++|......+.+..
T Consensus 143 ~ql~------~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~v--iiDtpp~~~~d~~~~~~l~~~~ 206 (295)
T 1ls1_A 143 EQLR------LLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLI--LVDTAGRLQIDEPLMGELARLK 206 (295)
T ss_dssp HHHH------HHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEE--EEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHH------HhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEE--EEeCCCCccccHHHHHHHHHHh
Confidence 1111 1122334433322 233444455 4666666788999 99999 8888655444444433
No 120
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.30 E-value=1.9e-11 Score=94.02 Aligned_cols=114 Identities=26% Similarity=0.287 Sum_probs=63.9
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCChhh--HHHHHHHHHHHHHHH
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSAED--RTENIRRVGEVAKLF 98 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~~~--~~~~~~~~~~~~~~~ 98 (190)
.+..++|++++|+|+|||||||++++|++.+ |.++++++++... .....++..++ ....+..+.......
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 3566789999999999999999999999976 5688998876431 11122333332 223333333332222
Q ss_pred HHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613 99 ADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 99 ~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~ 144 (190)
...+...++.........+..++.+... +..|+||.|...+-.|
T Consensus 98 ~~~g~~viid~~~~~~~~~~~l~~~~~~--~~vv~l~~~~e~l~~R 141 (200)
T 4eun_A 98 ADAGVSTIITCSALKRTYRDVLREGPPS--VDFLHLDGPAEVIKGR 141 (200)
T ss_dssp HHTTCCEEEEECCCCHHHHHHHTTSSSC--CEEEEEECCHHHHHHH
T ss_pred HhcCCCEEEEchhhhHHHHHHHHHhCCc--eEEEEEeCCHHHHHHH
Confidence 2233222322222334555556555443 3334999998887544
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.29 E-value=5.8e-12 Score=95.64 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=64.3
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc--ccccCCChhhHHHHHH---HHHHHHHHHHH
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL--NKNLGFSAEDRTENIR---RVGEVAKLFAD 100 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~--~~~i~~~~~~~~~~~~---~~~~~~~~~~~ 100 (190)
.+++|++++|+|||||||||++++|++. ++.|.++++++++.... ...+++.++....... .+.........
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 81 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAK 81 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999994 56788999998764321 1123455443221111 11111111111
Q ss_pred cCc-------------------ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613 101 AGL-------------------ICIASLISPYRKDR-DACRAMLPDSNFI 130 (190)
Q Consensus 101 ~~~-------------------~~~~~~lS~g~kqr-~iarall~~~~il 130 (190)
.+. ...+..+|.+++|+ .++|++..+|+++
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 82 EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 110 00134588899999 5999999998864
No 122
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.29 E-value=1e-13 Score=107.16 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=69.4
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc-------ccccCCChhhHHHHHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL-------NKNLGFSAEDRTENIRRVGEVAKLFA 99 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
.++|++++|+|+||||||||+++|+|++. +. ..+++.+...... ...+.+..... .....+.+....+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~~--i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 78 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-ER--VALLPMDHYYKDLGHLPLEERLRVNYDHPDA-FDLALYLEHAQALL 78 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-GG--EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGG-BCHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-CC--eEEEecCccccCcccccHHHhcCCCCCChhh-hhHHHHHHHHHHHH
Confidence 57899999999999999999999999873 21 1233322221100 00011110000 00111222222222
Q ss_pred HcCcc-eeecccCccHH----HH-HHHHHhCCCCCeEEEEeeCCchh-------hhhcChHHHHHHHHc
Q 029613 100 DAGLI-CIASLISPYRK----DR-DACRAMLPDSNFIEVFMNMPLEL-------CEARDPKGLYKLARA 155 (190)
Q Consensus 100 ~~~~~-~~~~~lS~g~k----qr-~iarall~~~~il~vllDEP~~~-------ld~~~~~~~~~~~~~ 155 (190)
..... ..+..+|.|++ || .++++++.++.++ ++|||+++ ||......+...+++
T Consensus 79 ~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll--~~de~~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 79 RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILV--LYPKELRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTT--TSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhh--ccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 22222 22445777764 44 4788999999998 99999999 887766666665543
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.29 E-value=1.1e-11 Score=95.72 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=69.4
Q ss_pred cccccccccc-ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHH-H
Q 029613 16 PIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVG-E 93 (190)
Q Consensus 16 ~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~-~ 93 (190)
+.+.|+++.. .+++|++++|+|+||||||||++.+++ ..+.+.++++.+.- +......+...... .
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~---------~~~~~~~~~~~~~~~~ 72 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGG---------FSPERLVQMAETRGLN 72 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCC---------CCHHHHHHHHHTTTCC
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCC---------CCHHHHHHHHHhcCCC
Confidence 3567778776 799999999999999999999999999 34566677765531 11111111111000 0
Q ss_pred HHHHHHHcCcceeecccCccHH--HH-HHHHHhCCC-CCeEEEEeeCCchhhhhc
Q 029613 94 VAKLFADAGLICIASLISPYRK--DR-DACRAMLPD-SNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 94 ~~~~~~~~~~~~~~~~lS~g~k--qr-~iarall~~-~~il~vllDEP~~~ld~~ 144 (190)
...+.... .+...+.++. ++ +.+++++.+ |+++ ++|||++.++..
T Consensus 73 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~ll--iiD~~~~~l~~~ 121 (220)
T 2cvh_A 73 PEEALSRF----ILFTPSDFKEQRRVIGSLKKTVDSNFALV--VVDSITAHYRAE 121 (220)
T ss_dssp HHHHHHHE----EEECCTTTSHHHHHHHHHHHHCCTTEEEE--EEECCCCCTTGG
T ss_pred hHHHhhcE----EEEecCCHHHHHHHHHHHHHHhhcCCCEE--EEcCcHHHhhhc
Confidence 00111111 1223444443 34 578889886 8888 999999998763
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.28 E-value=4.9e-12 Score=105.77 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=70.9
Q ss_pred ccccccc-ccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCC----CcE-EEEcCcccccccccccCCChhhHHHHHH
Q 029613 17 IGRLERQ-KLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRG----KLS-YILDGDNLRHGLNKNLGFSAEDRTENIR 89 (190)
Q Consensus 17 ~~~l~~~-sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~----~g~-i~~~g~~~~~~~~~~i~~~~~~~~~~~~ 89 (190)
.+.|+.+ ++.+++|+++.|+||||||||||++.+++... ++. .|. +++++++.. .++ .+.
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---------~~~----~i~ 183 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---------RPE----RIR 183 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---------CHH----HHH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---------CHH----HHH
Confidence 4556666 78999999999999999999999999999763 222 245 888876541 111 111
Q ss_pred HHHHH-----HHHHHHcCcceeecc-cCccHHHH-HHHHHhC-------CCCCeEEEEeeCCchhhhhc
Q 029613 90 RVGEV-----AKLFADAGLICIASL-ISPYRKDR-DACRAML-------PDSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 90 ~~~~~-----~~~~~~~~~~~~~~~-lS~g~kqr-~iarall-------~~~~il~vllDEP~~~ld~~ 144 (190)
.+.+- ..+.+. ..+... .+.++.|+ .++++++ .+|+++ ++|||++.+|+.
T Consensus 184 ~i~q~~~~~~~~v~~n---i~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll--IlDs~ta~ld~~ 247 (349)
T 1pzn_A 184 EIAQNRGLDPDEVLKH---IYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL--IVDSLTSHFRSE 247 (349)
T ss_dssp HHHHTTTCCHHHHGGG---EEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEE--EEETSSTTHHHH
T ss_pred HHHHHcCCCHHHHhhC---EEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEE--EEeCchHhhhhh
Confidence 11110 011111 112222 23455666 5777777 678999 999999999875
No 125
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.27 E-value=7.6e-13 Score=108.77 Aligned_cols=63 Identities=19% Similarity=-0.018 Sum_probs=55.4
Q ss_pred ccccCcceeccCcccccccccccc-------------------CCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEE
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLN-------------------QKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSY 62 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i-------------------~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i 62 (190)
+|+++++++.|. ++++++++.+ .+|++++|+|+||||||||+++|+|++ . +.+|.+
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l-~~~~~~G~i 113 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL-SRWPEHRRV 113 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH-TTSTTCCCE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-hhCCCCCeE
Confidence 688999999994 7899999988 899999999999999999999999988 5 678888
Q ss_pred EE---cCccc
Q 029613 63 IL---DGDNL 69 (190)
Q Consensus 63 ~~---~g~~~ 69 (190)
.+ +|...
T Consensus 114 ~vi~~d~~~~ 123 (308)
T 1sq5_A 114 ELITTDGFLH 123 (308)
T ss_dssp EEEEGGGGBC
T ss_pred EEEecCCccC
Confidence 87 76553
No 126
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.27 E-value=7e-12 Score=109.78 Aligned_cols=46 Identities=4% Similarity=-0.178 Sum_probs=41.9
Q ss_pred cc-CccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 109 LI-SPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 109 ~l-S~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+ |||++|| .+|++++.+| +++ +|||||++||......+++.+++.
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~l--ilDEp~~gld~~~~~~i~~~l~~~ 445 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSV--VFDEVDAGIGGAAAIAVAEQLSRL 445 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEE--EECSCSSSCCTHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEE--EEeCCcCCCCHHHHHHHHHHHHHH
Confidence 35 9999999 6999999999 999 999999999999999999888763
No 127
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.26 E-value=1.1e-11 Score=101.87 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=37.2
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
+|++++|+|||||||||++++|+|++ .+.+|.|.+.+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeecCC
Confidence 79999999999999999999999988 677889999887764
No 128
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.24 E-value=2.5e-12 Score=111.62 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=48.7
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
.+..+++++||++++ ++++|+||||||||||+++|+|++ ++.+|.|.++|.++.
T Consensus 15 ~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 15 INWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL-IPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH-CCCTTTCCCCCTTSC
T ss_pred eccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEEcc
Confidence 346789999999999 999999999999999999999988 788999999987653
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.20 E-value=2e-11 Score=90.18 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=54.9
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeec
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIAS 108 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (190)
+|+.++|+||||||||||+++|++.+.+.+...+++++.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------------------------------ 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------------------------------ 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------------------------------
Confidence 89999999999999999999999988443222677776654320
Q ss_pred ccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 109 LISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 109 ~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
+++.+++++ ++|||+. ++....+.+++.+.+
T Consensus 79 -------------~~~~~~~lL--ilDE~~~-~~~~~~~~l~~li~~ 109 (149)
T 2kjq_A 79 -------------DAAFEAEYL--AVDQVEK-LGNEEQALLFSIFNR 109 (149)
T ss_dssp -------------GGGGGCSEE--EEESTTC-CCSHHHHHHHHHHHH
T ss_pred -------------HHHhCCCEE--EEeCccc-cChHHHHHHHHHHHH
Confidence 124568999 9999987 444346777776653
No 130
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.19 E-value=2.4e-13 Score=105.39 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=36.8
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCcccc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLR 70 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~ 70 (190)
.++|++++|+||||||||||+++|+|++.+ +..|.+.+++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 578999999999999999999999998853 24677888776553
No 131
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.19 E-value=9.4e-12 Score=97.69 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=65.6
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLI 104 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (190)
..++|++++|+||||||||||+++|+|.+++ ...|.+.+.+++........++|.+++... +.. ....-...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~-f~~------~~~~~~f~ 84 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE-FKE------MISRDAFL 84 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH-HHH------HHHTTCEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH-HHH------HHhcCHHH
Confidence 4579999999999999999999999997732 246677777766543333445666654432 111 11100111
Q ss_pred eee---cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613 105 CIA---SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLAR 154 (190)
Q Consensus 105 ~~~---~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~ 154 (190)
... ..+.+..+ ..+..++..++++ +|| ||+...+.+.+.+.
T Consensus 85 E~~~~~~~~yg~~~--~~v~~~l~~G~il--lLD-----LD~~~~~~i~~~l~ 128 (219)
T 1s96_A 85 EHAEVFGNYYGTSR--EAIEQVLATGVDV--FLD-----IDWQGAQQIRQKMP 128 (219)
T ss_dssp EEEEETTEEEEEEH--HHHHHHHTTTCEE--EEE-----CCHHHHHHHHHHCT
T ss_pred HHHHHHhccCCCCH--HHHHHHHhcCCeE--EEE-----ECHHHHHHHHHHcc
Confidence 111 11111112 2345555667888 999 77777777776654
No 132
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.18 E-value=2.2e-10 Score=85.76 Aligned_cols=110 Identities=23% Similarity=0.309 Sum_probs=61.9
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cc-cccCCChh--hHHHHHHHHHHHHHHHHHcC
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LN-KNLGFSAE--DRTENIRRVGEVAKLFADAG 102 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~-~~i~~~~~--~~~~~~~~~~~~~~~~~~~~ 102 (190)
.+|++++|+|+|||||||++++|++.+ |.++++++++... .. ...++..+ .....+..+......+...+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN 80 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999965 4678888776431 10 11233322 22222333333222221222
Q ss_pred cceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613 103 LICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 103 ~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~ 144 (190)
...++..-.....++..++... +++..|+||.|...+..|
T Consensus 81 ~~~vi~~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R 120 (175)
T 1knq_A 81 KVSLIVCSALKKHYRDLLREGN--PNLSFIYLKGDFDVIESR 120 (175)
T ss_dssp SEEEEECCCCSHHHHHHHHTTC--TTEEEEEEECCHHHHHHH
T ss_pred CcEEEEeCchHHHHHHHHHhcC--CCEEEEEEECCHHHHHHH
Confidence 2222222122344455555433 344445999999887655
No 133
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.18 E-value=4e-12 Score=101.75 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=41.3
Q ss_pred cccccCcc-eecc-CccccccccccccCC---ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 3 TVGNSTNI-FWQE-SPIGRLERQKLLNQK---GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 3 ~~l~~~~l-~~~~-~~~~~l~~~sl~i~~---Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
++++++|+ +++| ++..+++++||++.+ |++++|+|++||||||++++|++.+. ..+++.+.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg-----~~~~d~d~~ 82 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG-----YTFFDCDTL 82 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC-----CcEEeCcHH
Confidence 37899999 9999 778899999999999 99999999999999999999999772 235665443
No 134
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.17 E-value=9.9e-11 Score=96.25 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=65.8
Q ss_pred ccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHc
Q 029613 22 RQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADA 101 (190)
Q Consensus 22 ~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 101 (190)
.+++...+|++++|+|+|||||||+++.|++.+. +..+.+.+.+.+... .. .. .++..+....
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~r---------~~-a~------eqL~~~~~~~ 158 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFR---------AA-AI------EQLKIWGERV 158 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTC---------HH-HH------HHHHHHHHHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEcccccc---------HH-HH------HHHHHHHHHc
Confidence 4567778999999999999999999999999884 445556655444321 10 11 1122222333
Q ss_pred CcceeecccCccHHHH----HHHHHhCCCCCeEEEEeeCCch
Q 029613 102 GLICIASLISPYRKDR----DACRAMLPDSNFIEVFMNMPLE 139 (190)
Q Consensus 102 ~~~~~~~~lS~g~kqr----~iarall~~~~il~vllDEP~~ 139 (190)
++.. ....++++.++ .+++++..+++++ ++|+|..
T Consensus 159 gl~~-~~~~s~~~~~~v~~~al~~a~~~~~dvv--IiDtpg~ 197 (306)
T 1vma_A 159 GATV-ISHSEGADPAAVAFDAVAHALARNKDVV--IIDTAGR 197 (306)
T ss_dssp TCEE-ECCSTTCCHHHHHHHHHHHHHHTTCSEE--EEEECCC
T ss_pred CCcE-EecCCccCHHHHHHHHHHHHHhcCCCEE--EEECCCc
Confidence 4332 33456777665 4788888999999 9999963
No 135
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.16 E-value=6.4e-12 Score=96.84 Aligned_cols=27 Identities=37% Similarity=0.352 Sum_probs=23.3
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++|++++|+||||||||||+++|+|.+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999999999977
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.15 E-value=1.8e-11 Score=92.40 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=58.9
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG 102 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (190)
++.+.+|+.++|+||||||||||+++|++.+. ..+...++++ ..+. .. .+...+....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~---------------~~~~---~~---~~~~~~~~~~ 90 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD---------------TKDL---IF---RLKHLMDEGK 90 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE---------------HHHH---HH---HHHHHHHHTC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE---------------HHHH---HH---HHHHHhcCch
Confidence 67778899999999999999999999999884 2232222221 1111 11 1111111111
Q ss_pred cceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCch-hhhhcChHHHHHHHHc
Q 029613 103 LICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLE-LCEARDPKGLYKLARA 155 (190)
Q Consensus 103 ~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~-~ld~~~~~~~~~~~~~ 155 (190)
. . .+...+.+|+++ +||||++ ++|+...+.+++.+.+
T Consensus 91 ~---------~-----~~~~~~~~~~ll--ilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 91 D---------T-----KFLKTVLNSPVL--VLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp C---------S-----HHHHHHHTCSEE--EEETCSSSCCCHHHHHHHHHHHHH
T ss_pred H---------H-----HHHHHhcCCCEE--EEeCCCCCcCCHHHHHHHHHHHHH
Confidence 0 0 112223478999 9999985 7887777777777654
No 137
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.12 E-value=3.2e-10 Score=98.46 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=42.9
Q ss_pred ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.+++||++.+|++++|+|+||||||||+++|+|++ .+.+|.|.+.+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcc
Confidence 36899999999999999999999999999999988 55678888875544
No 138
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.10 E-value=7.5e-12 Score=94.70 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=66.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEEcCccccc-------ccc-cccC----CChhhH--------HHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYILDGDNLRH-------GLN-KNLG----FSAEDR--------TENI 88 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~~g~~~~~-------~~~-~~i~----~~~~~~--------~~~~ 88 (190)
++++|+|+||||||||+++|.+++.+.+ .|.|.+++.++.. ..+ ..++ +..++. .+ .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~-~ 81 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEE-E 81 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHH-H
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChh-h
Confidence 5899999999999999999999884432 7899998876321 111 1223 111110 11 0
Q ss_pred HHHHHHHHHHHH-c-Ccc-eeecccCccHHHH-HHHHHhCCCCCeE-----EEEeeCCch---hhhhcChHHHHHHH
Q 029613 89 RRVGEVAKLFAD-A-GLI-CIASLISPYRKDR-DACRAMLPDSNFI-----EVFMNMPLE---LCEARDPKGLYKLA 153 (190)
Q Consensus 89 ~~~~~~~~~~~~-~-~~~-~~~~~lS~g~kqr-~iarall~~~~il-----~vllDEP~~---~ld~~~~~~~~~~~ 153 (190)
...+..++.. . ++. .+...+|+|++|| ++||+++.+|++. -+.=|.|.. .++..+.+.+.+.+
T Consensus 82 --~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i 156 (171)
T 2f1r_A 82 --GNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFI 156 (171)
T ss_dssp --HTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHH
T ss_pred --hhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHH
Confidence 0112222222 1 332 2344599999999 6999999998763 223355532 22334555555444
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.04 E-value=5.1e-11 Score=97.27 Aligned_cols=114 Identities=14% Similarity=0.061 Sum_probs=63.5
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEE-cCcccccc--cccccC--------C----ChhhHHHHH
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYIL-DGDNLRHG--LNKNLG--------F----SAEDRTENI 88 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~-~g~~~~~~--~~~~i~--------~----~~~~~~~~~ 88 (190)
.-.++.+++|+|++|||||||++.|.+.+...+ ...+.+ ..++.... ....+. + .++... .
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d--~ 104 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHD--M 104 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBC--H
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhH--H
Confidence 346789999999999999999999999884322 111222 33322110 000000 0 011000 1
Q ss_pred HHHHHHHHHHHHc------C---cceeecccCccHHHH-HHH--HHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 89 RRVGEVAKLFADA------G---LICIASLISPYRKDR-DAC--RAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 89 ~~~~~~~~~~~~~------~---~~~~~~~lS~g~kqr-~ia--rall~~~~il~vllDEP~~~ld~~~ 145 (190)
..+.+....+..- . +-.+...+|+||+|| .+| +++ +|+++ |+||+++++|+..
T Consensus 105 ~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~Il--IlEG~~~~ld~~~ 169 (290)
T 1odf_A 105 KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIF--ILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEE--EEEESSTTCCCCC
T ss_pred HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEE--EEeCccccCCccc
Confidence 1111111111111 0 112345689999998 455 555 78999 9999999998864
No 140
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.03 E-value=1.3e-11 Score=97.91 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=27.9
Q ss_pred CccEEEEECCCCCcHHHHHHHHH---HHHhhCCCcEEEEc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVN---KELYSRGKLSYILD 65 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~---g~l~~~~~g~i~~~ 65 (190)
++++++|+|+|||||||++++|+ |+. .+..|.+.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~-~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ-HLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC-CEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe-EecHHHHHHH
Confidence 47999999999999999999999 543 3444544444
No 141
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.01 E-value=7.1e-10 Score=86.77 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=39.5
Q ss_pred cccccccc-cccCCccEEEEECCCCCcHHHHHHHHHHHHh-h-----CCCcEEEEcCcc
Q 029613 17 IGRLERQK-LLNQKGCVVWITGLSGSGKSTLAFSVNKELY-S-----RGKLSYILDGDN 68 (190)
Q Consensus 17 ~~~l~~~s-l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~-----~~~g~i~~~g~~ 68 (190)
.+.|+.+- =-+++|++++|+||||||||||++.|++... + .+.+.++++++.
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 33444442 3578999999999999999999999999531 2 257788888765
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=2e-10 Score=88.18 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=25.3
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+++++||++.+|++++|+|++||||||+++.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999977
No 143
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.96 E-value=6.8e-11 Score=99.09 Aligned_cols=45 Identities=20% Similarity=0.044 Sum_probs=33.9
Q ss_pred cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEc
Q 029613 19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILD 65 (190)
Q Consensus 19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~ 65 (190)
-++++++.+ +|++++|+|+||||||||+++|+|.+ . +..|.|.+.
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~~G~I~~~ 250 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQ-NEILTNDVSNV 250 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCS-SCCCCC-----
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccc-cccccCCcccc
Confidence 356666654 79999999999999999999999977 5 777887765
No 144
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.96 E-value=1.1e-11 Score=97.90 Aligned_cols=57 Identities=16% Similarity=-0.029 Sum_probs=39.7
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.|+++|+...++. ++++.+ ++++|+||||||||||+++|+|.+ .+.+|.|.++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~-~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTAL-IPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHH-SCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhccc-ccCCCeEEECCEEc
Confidence 3677777655542 345555 899999999999999999999988 67788899988776
No 145
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.95 E-value=1.3e-09 Score=90.36 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=38.4
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
..++|++++|+|||||||||+++.|+|.+ .+..|.|.+.+.++.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l-~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWL-KNHGFSVVIAASDTF 168 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEECCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCEEEEEeeccc
Confidence 45789999999999999999999999988 566788988887754
No 146
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.94 E-value=2.1e-10 Score=89.91 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=22.9
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHH-HHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVN-KEL 54 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~-g~l 54 (190)
.+-.+++||++++|++++|+||||||||||+++|+ |++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999 976
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.92 E-value=5.5e-10 Score=85.38 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=31.0
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
|++..+|++++|+||||||||||+++|+|++ + .+.+.+..+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~ 41 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHT 41 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceec
Confidence 5677899999999999999999999999975 2 356666544
No 148
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.88 E-value=2.3e-08 Score=74.66 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.4
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.|.+++|+|++||||||+++.|+..+
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999999866
No 149
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.87 E-value=1.5e-08 Score=76.64 Aligned_cols=38 Identities=32% Similarity=0.361 Sum_probs=32.1
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
|++++|+|||||||||++++|++. ..|.++++++++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhh
Confidence 789999999999999999999872 35778898877643
No 150
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.86 E-value=3.1e-11 Score=103.11 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=66.9
Q ss_pred ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh----------hCCCcEEEEcC-cccccccccccCCCh--hh---
Q 029613 20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY----------SRGKLSYILDG-DNLRHGLNKNLGFSA--ED--- 83 (190)
Q Consensus 20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~----------~~~~g~i~~~g-~~~~~~~~~~i~~~~--~~--- 83 (190)
.++++|+++.|+.++|+|+||||||||+++|++... .+..|.+.+++ ..+. +....++.. ..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~--l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFT--LADIPGIIEGASEGKG 224 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEE--EEECCCCCCCGGGSCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEE--EEeccccccchhhhhh
Confidence 478999999999999999999999999999998621 23334455543 2211 001111110 00
Q ss_pred H-HHHHHHHHHHHHHHHHcCc-ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcCh
Q 029613 84 R-TENIRRVGEVAKLFADAGL-ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDP 146 (190)
Q Consensus 84 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~ 146 (190)
. ...++.+.....++...++ ...+..+|.+++|+ .++++++..|.++ ++ +.+|....
T Consensus 225 L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~IL--Vl----NKlDl~~~ 284 (416)
T 1udx_A 225 LGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV--AL----NKVDLLEE 284 (416)
T ss_dssp SCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEE--EE----ECCTTSCH
T ss_pred hhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEE--EE----ECCChhhH
Confidence 0 0111110000000000111 12234578888998 5999999999988 66 55555443
No 151
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.85 E-value=2.3e-08 Score=76.46 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=59.8
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCcc
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGLI 104 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (190)
..+++|+|++||||||+++.|++.+ |..+++++.+... ......+........+.. +...+ ..+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~---l~~~~-~~~~~ 88 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAA---IGERL-ASREP 88 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHH---HHHHH-TSSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHH---HHHHH-hcCCC
Confidence 5689999999999999999999876 2446777665321 111122333223332322 22222 22222
Q ss_pred eeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613 105 CIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144 (190)
Q Consensus 105 ~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~ 144 (190)
.++........++..++.+...|. +.++||.|...+-.|
T Consensus 89 vivd~~~~~~~~~~~l~~~~~~~~-~vi~l~~~~e~~~~R 127 (202)
T 3t61_A 89 VVVSCSALKRSYRDKLRESAPGGL-AFVFLHGSESVLAER 127 (202)
T ss_dssp CEEECCCCSHHHHHHHHHTSTTCC-EEEEEECCHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHhcCCCe-EEEEEeCCHHHHHHH
Confidence 233332334555666666665443 335999999887555
No 152
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.83 E-value=5.1e-10 Score=97.96 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=45.5
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
..+++++++.+++|++++|+|||||||||++++|+|++ +++.|.+.++|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCcc
Confidence 35778999999999999999999999999999999988 7788988887754
No 153
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.82 E-value=8.7e-10 Score=98.19 Aligned_cols=61 Identities=18% Similarity=0.050 Sum_probs=49.8
Q ss_pred cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
+++.-|+...+++++++.+.+|+.+.|+||||+|||||+++|++.+.....+.+.+.+...
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 3444567778999999999999999999999999999999999987433346777766554
No 154
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.80 E-value=5.4e-09 Score=84.41 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=45.0
Q ss_pred eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
+.+....+++++++.+.+| ++|+||||||||||+++|++.+ . .+.+.++|.++.
T Consensus 28 ~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~-~--~~~i~i~g~~l~ 81 (274)
T 2x8a_A 28 APVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES-G--LNFISVKGPELL 81 (274)
T ss_dssp HHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT-T--CEEEEEETTTTC
T ss_pred HHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc-C--CCEEEEEcHHHH
Confidence 3445567889999999999 9999999999999999999976 3 367888887664
No 155
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=2.9e-09 Score=88.01 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=26.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
..+.|+||||+||||++++|++.+..++.|.+.+++.++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 348999999999999999999955467778888777554
No 156
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.79 E-value=2.5e-09 Score=78.93 Aligned_cols=49 Identities=6% Similarity=0.091 Sum_probs=43.6
Q ss_pred ecccCccHHHH-HHH------HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613 107 ASLISPYRKDR-DAC------RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK 157 (190)
Q Consensus 107 ~~~lS~g~kqr-~ia------rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~ 157 (190)
+..+|+||+|| .+| |+++.+|+++ +|||||++||+..++.+.+.+++-.
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~~ 110 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLL--ILDEPTPYLDEERRRKLITIMERYL 110 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEE--EEESCSCTTCHHHHHHHHHHHHHTG
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEE--EEECCCccCCHHHHHHHHHHHHHHH
Confidence 56799999999 464 8999999999 9999999999999999999888643
No 157
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.76 E-value=1.3e-08 Score=94.32 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=53.6
Q ss_pred HHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCC--eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613 95 AKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSN--FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL 162 (190)
Q Consensus 95 ~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~--il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~ 162 (190)
...+...++. ..+..|||||+|| .|||+|+.+|+ ++ +|||||++||+++.+.+.+.+++.+-.|.+
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~ll--lLDEPT~gLD~~~~~~l~~~L~~L~~~G~T 518 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIY--VLDEPTIGLHPRDTERLIKTLKKLRDLGNT 518 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEE--EEECTTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEE--EEECCccCCCHHHHHHHHHHHHHHHhcCCE
Confidence 3445555553 3477899999999 69999999876 99 999999999999999999999986655533
No 158
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.76 E-value=3.4e-08 Score=81.55 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=39.7
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
++++|...+|++++|+|+||+||||++..|++.+.. ..+.+.+.+.++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 689999999999999999999999999999998844 455566554444
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.76 E-value=1e-09 Score=87.04 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=48.6
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
+++++.+.|+...+++++++.+.+| +.|+||||||||||+++|++.+ +.+.+.+++.++
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~ 85 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHH
Confidence 4556666676667899999999999 8999999999999999999976 266778877654
No 160
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.76 E-value=8e-08 Score=76.38 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=67.2
Q ss_pred cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc------cccccCCChhhHHHH-H-HH
Q 029613 19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------LNKNLGFSAEDRTEN-I-RR 90 (190)
Q Consensus 19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------~~~~i~~~~~~~~~~-~-~~ 90 (190)
++++.. ..+++.+++|+|+|||||||+++.|+..+ . .+.++++++.+... +....+....+..+. . ..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l-~--~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~ 97 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF-Q--GNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKM 97 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT-T--TCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHH
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc-C--CCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHH
Confidence 344444 67788999999999999999999999866 2 34678898877542 122234333333221 1 11
Q ss_pred HHHHHHHHHHcCcceeecccCccHHHH-HHHHHhC-CCCCeEEEEeeCCchhhhhcCh
Q 029613 91 VGEVAKLFADAGLICIASLISPYRKDR-DACRAML-PDSNFIEVFMNMPLELCEARDP 146 (190)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall-~~~~il~vllDEP~~~ld~~~~ 146 (190)
+..+...+...+...++........++ ...+.+. ....+..++++.|...+..|..
T Consensus 98 ~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~ 155 (253)
T 2p5t_B 98 VESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTL 155 (253)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHH
Confidence 223333332333222332222222333 2222221 2223333488999888877643
No 161
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.76 E-value=5.8e-09 Score=78.43 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=31.3
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
+++++.+.+| +++|+|+|||||||++++|.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6788999999 999999999999999999999773
No 162
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.76 E-value=4.1e-08 Score=80.17 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=56.8
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCccee
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICI 106 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (190)
.+|++++|+|+|||||||++..|++.+.. .|.-..+++.+.... . ..+.+.. .....++...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~--------~---a~eqL~~------~~~~~gl~~~ 165 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI--------A---AVEQLKT------YAELLQAPLE 165 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST--------T---HHHHHHH------HHTTTTCCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc--------h---HHHHHHH------HHHhcCCCeE
Confidence 57999999999999999999999998842 343334444433211 0 1111111 1112222211
Q ss_pred ecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613 107 ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL 152 (190)
Q Consensus 107 ~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~ 152 (190)
. ..++..-...+++ +.+++++ ++| |++++..+...+.++
T Consensus 166 ~-~~~~~~l~~al~~--~~~~dlv--IiD--T~G~~~~~~~~~~el 204 (296)
T 2px0_A 166 V-CYTKEEFQQAKEL--FSEYDHV--FVD--TAGRNFKDPQYIDEL 204 (296)
T ss_dssp B-CSSHHHHHHHHHH--GGGSSEE--EEE--CCCCCTTSHHHHHHH
T ss_pred e-cCCHHHHHHHHHH--hcCCCEE--EEe--CCCCChhhHHHHHHH
Confidence 1 1222221123443 4888998 999 668887766554443
No 163
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.76 E-value=1.6e-09 Score=89.70 Aligned_cols=51 Identities=22% Similarity=0.151 Sum_probs=47.0
Q ss_pred ccccCcceeccCccccccccccccCCc-------cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKG-------CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-------eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+++.++++..|+...+++++++.+++| +.++|+||||+|||||+++|++.+
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 578889999999888999999999876 899999999999999999999987
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.74 E-value=1.3e-09 Score=87.77 Aligned_cols=59 Identities=24% Similarity=0.215 Sum_probs=48.2
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
+++++.+.|+...+++++++.+.+| ++|+||||||||||+++|++.+ . .+.+.+++.++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~-~--~~~i~~~~~~~ 109 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA-R--VPFITASGSDF 109 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT-T--CCEEEEEHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc-C--CCEEEecHHHH
Confidence 3455666676667889999999999 8899999999999999999976 2 66778876654
No 165
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.73 E-value=4.7e-09 Score=79.63 Aligned_cols=26 Identities=38% Similarity=0.385 Sum_probs=24.0
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
|++++|+||||||||||+++|+|++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999873
No 166
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.72 E-value=1.6e-08 Score=85.86 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=33.5
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHH--HHHhh----CCCcEEEEcCcc
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVN--KELYS----RGKLSYILDGDN 68 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~--g~l~~----~~~g~i~~~g~~ 68 (190)
=-+.+|+++.|+||||||||||++.|+ +.+++ .+.+.++++++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 357899999999999999999999664 33311 235578888765
No 167
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.71 E-value=5.6e-08 Score=75.90 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=40.4
Q ss_pred cccccccc-ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 16 PIGRLERQ-KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 16 ~~~~l~~~-sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
+.+.|+++ .--+.+|+++.|+|+||||||||+..++......+.+.++++.+.
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 34567776 677899999999999999999997666554435666777776653
No 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.71 E-value=1.6e-08 Score=76.68 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=29.6
Q ss_pred HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
..|++++.++++. ++| +|++|....+.+++.+.+
T Consensus 155 ~~a~~l~~~~~~~--~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 155 DEARAFAEKNGLS--FIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHTTCE--EEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCE--EEE--EeCCCCCCHHHHHHHHHH
Confidence 5889999999998 999 999999999998887753
No 169
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.68 E-value=3.5e-09 Score=86.59 Aligned_cols=45 Identities=29% Similarity=0.271 Sum_probs=30.9
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE---cCcccc
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL---DGDNLR 70 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~---~g~~~~ 70 (190)
|++..|++++|+||||||||||+++|+|+. .+..|.|.+ +|.++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~-~~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTC-CCC-------------CC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccc-cccccceecccCCCCCce
Confidence 456789999999999999999999999977 778899998 777654
No 170
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.67 E-value=2.5e-09 Score=88.46 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=39.9
Q ss_pred cceeccCccccccccccccCCcc------EEEEECCCCCcHHHHHHHHHHHHh
Q 029613 9 NIFWQESPIGRLERQKLLNQKGC------VVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 9 ~l~~~~~~~~~l~~~sl~i~~Ge------ii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
.+++.|++..++.+++..+..+. +++|+|||||||||++++|.+++.
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35566777788888888887665 999999999999999999999884
No 171
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.66 E-value=1.2e-08 Score=77.08 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=25.1
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+|++++|+||||||||||+++|.+.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999976
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.64 E-value=1.2e-08 Score=77.86 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=26.0
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+++.+|++++|+|||||||||++++|++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 367899999999999999999999999976
No 173
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.61 E-value=1.3e-06 Score=69.54 Aligned_cols=43 Identities=30% Similarity=0.386 Sum_probs=33.1
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~ 71 (190)
++.+++|+|++||||||+++.|+..+...+...+.++.+.+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 4678999999999999999999987744454444467776653
No 174
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.58 E-value=3e-08 Score=76.08 Aligned_cols=40 Identities=33% Similarity=0.288 Sum_probs=32.4
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
...+|++++|+|+|||||||++++|++.+. +..+.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~ 57 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVFH 57 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEEec
Confidence 467899999999999999999999999884 3345555443
No 175
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.58 E-value=1.5e-08 Score=84.27 Aligned_cols=53 Identities=21% Similarity=0.102 Sum_probs=47.4
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS 56 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~ 56 (190)
+++.++..+.|+...+++++++...+|.+++|+|+||+||||+++.|++.+.+
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46777788888878899999999999999999999999999999999998843
No 176
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.57 E-value=6.8e-09 Score=85.29 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=27.0
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE---cCccc
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL---DGDNL 69 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~---~g~~~ 69 (190)
+++.+|++++|+|+||||||||+++|.|.+ .+..|.|.+ +|..+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHT 214 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccc-cccccceeeecCCCccc
Confidence 778899999999999999999999999977 667788877 66544
No 177
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.56 E-value=1.8e-08 Score=82.46 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=32.1
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE---cCccc
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL---DGDNL 69 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~---~g~~~ 69 (190)
+++.+|++++|+||||||||||+++|. .+ .+..|.|.+ +|.++
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHT 205 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------C
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCc
Confidence 345679999999999999999999999 66 678888888 77654
No 178
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.55 E-value=5.6e-09 Score=83.17 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=28.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHH---HHHhhCCCcEEE
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVN---KELYSRGKLSYI 63 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~---g~l~~~~~g~i~ 63 (190)
.+|++++|+|||||||||++++|+ |+. .++.|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR-LLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE-EEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC-cCCCCcee
Confidence 789999999999999999999999 533 34455554
No 179
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.53 E-value=3.9e-08 Score=74.32 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=42.2
Q ss_pred ecccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 107 ASLISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 107 ~~~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
+..|||||||| ++|++++ ..|+++ +||||+++||+.....+.+.+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~l--lLDEp~a~LD~~~~~~~~~~l~~~ 114 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFY--LFDEIDAHLDDANVKRVADLIKES 114 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEE--EECCCccCCCHHHHHHHHHHHHHh
Confidence 56799999999 6999996 456899 999999999999999999988763
No 180
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.53 E-value=5.3e-08 Score=89.55 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=50.4
Q ss_pred HHHHcCcc-----eeecccCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 97 LFADAGLI-----CIASLISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 97 ~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
.+...++. ..+..||+||+|| ++|++|..+| .++ +|||||++||+.+.+.+++.+++.+-.|
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~ll--ILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVY--VLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEE--EEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEE--EeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 34455553 2377899999999 6999999998 488 9999999999999999999887654344
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.53 E-value=3.7e-08 Score=83.11 Aligned_cols=38 Identities=24% Similarity=0.060 Sum_probs=35.4
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+++++++.+++|++++|+||||||||||+++|++.+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999965
No 182
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.52 E-value=3.1e-08 Score=77.61 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=36.2
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
.+-+...++|++++|.|+|||||||++++|++. .|.+.+.+.+..
T Consensus 11 ~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPVE 55 (230)
T ss_dssp -CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTHH
T ss_pred CCccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCHH
Confidence 344667789999999999999999999999984 456777776653
No 183
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.51 E-value=1e-07 Score=72.43 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613 118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA 155 (190)
Q Consensus 118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~ 155 (190)
..|++++.++++. ++| +|++|....+.+++.+.+
T Consensus 131 ~~a~~l~~~~~~~--~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 131 DEARAFAEKNNLS--FIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHTTCE--EEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCe--EEE--EeCCCCCCHHHHHHHHHH
Confidence 4688888889988 999 999999998887776654
No 184
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.49 E-value=6.4e-08 Score=74.67 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=25.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++|++++|+|||||||||+++.|++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999976
No 185
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.47 E-value=1.8e-07 Score=86.82 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=46.2
Q ss_pred eecccCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 106 IASLISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 106 ~~~~lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
.+..|||||+|| +||+++..+| .++ +|||||++||+++.+.+++.+++.+-.|
T Consensus 501 ~~~tLSGGEkQRV~LA~aL~~~~~~~ll--ILDEPTagLdp~~~~~L~~~L~~Lr~~G 556 (972)
T 2r6f_A 501 SAGTLSGGEAQRIRLATQIGSRLTGVLY--VLDEPSIGLHQRDNDRLIATLKSMRDLG 556 (972)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEE--EEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEE--EEeCcccCCCHHHHHHHHHHHHHHHhCC
Confidence 367899999999 6999999985 899 9999999999999999999888654344
No 186
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.46 E-value=8e-07 Score=76.01 Aligned_cols=56 Identities=18% Similarity=0.088 Sum_probs=42.1
Q ss_pred CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
+++.+.|+... ++++|. ++++++++|+|||||||++..|++.+. +..+.+.+.+.+
T Consensus 80 ~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D 135 (425)
T 2ffh_A 80 EALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECC
T ss_pred HHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeecc
Confidence 34566676543 678887 899999999999999999999999884 444555554433
No 187
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.44 E-value=6.7e-07 Score=74.59 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=61.1
Q ss_pred cccccccc--ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613 18 GRLERQKL--LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA 95 (190)
Q Consensus 18 ~~l~~~sl--~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 95 (190)
..|+.+-- -+++|+++.|.|+||||||||+..++......+...++++.+... .+. . .+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~---------~~~-~---a~------ 107 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL---------DPE-Y---AK------ 107 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---------CHH-H---HH------
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc---------CHH-H---HH------
Confidence 34444432 567999999999999999999999987665556666777665321 111 0 00
Q ss_pred HHHHHcCc--ce-eecccCccHHHHHHHHHhCCC--CCeEEEEeeCCchhh
Q 029613 96 KLFADAGL--IC-IASLISPYRKDRDACRAMLPD--SNFIEVFMNMPLELC 141 (190)
Q Consensus 96 ~~~~~~~~--~~-~~~~lS~g~kqr~iarall~~--~~il~vllDEP~~~l 141 (190)
..+. .. .+......+....++++++.+ ++++ ++|++++.+
T Consensus 108 ----~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lI--VIDsl~~l~ 152 (349)
T 2zr9_A 108 ----KLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDII--VIDSVAALV 152 (349)
T ss_dssp ----HTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEE--EEECGGGCC
T ss_pred ----HcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEE--EEcChHhhc
Confidence 1111 00 111112233444677777654 7888 999999876
No 188
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.42 E-value=1.2e-07 Score=80.96 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=41.5
Q ss_pred ccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 109 LISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 109 ~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
.+|+||+|+ ++|++++ .+|+++ +||||+++||+..+..+.+.+++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~l--llDEp~~~LD~~~~~~l~~~l~~~ 383 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFF--VLDEVDAALDITNVQRIAAYIRRH 383 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEE--EESSTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEE--EeCCCcccCCHHHHHHHHHHHHHH
Confidence 489999999 6999998 678999 999999999999999999988763
No 189
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.42 E-value=2.1e-07 Score=86.54 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=46.0
Q ss_pred eecccCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613 106 IASLISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160 (190)
Q Consensus 106 ~~~~lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~ 160 (190)
.+..|||||+|| +||+++..+| .++ +|||||++||+++.+.+++.+++.+-.|
T Consensus 518 ~~~tLSGGEkQRV~LA~aL~~~~~~~ll--ILDEPTagLdp~~~~~L~~~L~~Lr~~G 573 (993)
T 2ygr_A 518 AAATLSGGEAQRIRLATQIGSGLVGVLY--VLDEPSIGLHQRDNRRLIETLTRLRDLG 573 (993)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEE--EEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEE--EEeCcccCCCHHHHHHHHHHHHHHHHcC
Confidence 477899999999 6999999984 888 9999999999999999998887654334
No 190
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.41 E-value=9.8e-07 Score=72.00 Aligned_cols=57 Identities=18% Similarity=0.075 Sum_probs=41.4
Q ss_pred CcceeccCccccccc-cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 8 TNIFWQESPIGRLER-QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 8 ~~l~~~~~~~~~l~~-~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
+++.+.|+... ++ ++++.+ |.+++++|+||+||||++..|++.+...+.-..+++.+
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 34555666443 56 888877 99999999999999999999999885443333344433
No 191
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.41 E-value=4.9e-08 Score=85.95 Aligned_cols=59 Identities=24% Similarity=0.259 Sum_probs=45.8
Q ss_pred ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
.++++.+.|....++.++++++ +|++++|+||||+|||||+++|++.+ .+..+.+.+.+
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~ 143 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGG 143 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecc
Confidence 3455556666666788899998 89999999999999999999999988 44455554443
No 192
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.40 E-value=3.1e-06 Score=72.76 Aligned_cols=123 Identities=14% Similarity=0.179 Sum_probs=69.1
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCccccccc-----ccccCCChhhH------
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHGL-----NKNLGFSAEDR------ 84 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~~-----~~~i~~~~~~~------ 84 (190)
...|+++..-+++|+++.|.|+||+|||||+..+++.+.. .+...+++..+.-...+ ....++..+..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~ 269 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLT 269 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCC
Confidence 4578888888999999999999999999999999987743 34345555543211100 00112222211
Q ss_pred HHHHHHHHHHHHHHHHcCccee-ecccCccHHHHHHHHHhC--CCCCeEEEEeeCCchhhh
Q 029613 85 TENIRRVGEVAKLFADAGLICI-ASLISPYRKDRDACRAML--PDSNFIEVFMNMPLELCE 142 (190)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~~lS~g~kqr~iarall--~~~~il~vllDEP~~~ld 142 (190)
.+...++......+....+... ...++.++. +..++.+. .+++++ ++|++.....
T Consensus 270 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i-~~~~~~l~~~~~~~li--vID~l~~~~~ 327 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDI-RAKCRRLKQESGLGMI--VIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHH-HHHHHHHHTTTCCCEE--EEECGGGSCC
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH-HHHHHHHHHHcCCCEE--EEccHHHhcc
Confidence 0111222222222222221111 223555543 34566655 467888 9999998764
No 193
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.39 E-value=1.4e-07 Score=69.98 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=29.3
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.|.+++|+|+|||||||++++|++.+ . ..+++++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l-~----~~~id~d~~ 38 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL-N----MEFYDSDQE 38 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT-T----CEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh-C----CCEEeccHH
Confidence 36789999999999999999999976 2 246776554
No 194
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.38 E-value=2.6e-07 Score=80.08 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=29.6
Q ss_pred ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..++++++.+.+| +.|+||||+|||||+++|++..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 3456677777777 7799999999999999999976
No 195
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.37 E-value=2.2e-06 Score=63.59 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=27.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
.+++|.|++||||||+++.|+.. ..|..+++.+.+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r 38 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYR 38 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHH
Confidence 57899999999999999999872 1245566655443
No 196
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.37 E-value=2.8e-07 Score=71.00 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=26.2
Q ss_pred cccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
-++...+|++++|+||||||||||++.|.+.+
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 35566789999999999999999999999975
No 197
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.32 E-value=1.2e-07 Score=82.92 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=74.7
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHH-HHhhCCCcEEE---EcCccccc----ccccc---cCCChhhHHHHHH
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK-ELYSRGKLSYI---LDGDNLRH----GLNKN---LGFSAEDRTENIR 89 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g-~l~~~~~g~i~---~~g~~~~~----~~~~~---i~~~~~~~~~~~~ 89 (190)
+-+++++.++..+.|.|.+||||||+++.|.. ++.....+.+. +|-..... .+... +.....+..+.++
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~ 237 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALR 237 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHH
Confidence 34678888999999999999999999999875 34333333333 33222110 11111 1111222222222
Q ss_pred H----HHHHHHHHHHcCccee-------ecccCccHHHH-----------HHHHHhCCCCCeEEEEeeCCchhhhhc--C
Q 029613 90 R----VGEVAKLFADAGLICI-------ASLISPYRKDR-----------DACRAMLPDSNFIEVFMNMPLELCEAR--D 145 (190)
Q Consensus 90 ~----~~~~~~~~~~~~~~~~-------~~~lS~g~kqr-----------~iarall~~~~il~vllDEP~~~ld~~--~ 145 (190)
+ +.+-..++...++..+ ...+|+|++|+ .+++++...|.++ +++||+.+.++.. .
T Consensus 238 ~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv-lvIDE~~~ll~~~~~~ 316 (512)
T 2ius_A 238 WCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV-VLVDEFADLMMTVGKK 316 (512)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEE-EEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEE-EEEeCHHHHHhhhhHH
Confidence 1 1122344555554332 11244554432 1334445566532 4999999888632 2
Q ss_pred -hHHHHHHHHcCCCCCcccc
Q 029613 146 -PKGLYKLARAGKIKGLLSI 164 (190)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~ 164 (190)
.+.+...++.|+..|+..+
T Consensus 317 ~~~~l~~Lar~gRa~GI~LI 336 (512)
T 2ius_A 317 VEELIARLAQKARAAGIHLV 336 (512)
T ss_dssp HHHHHHHHHHHCGGGTEEEE
T ss_pred HHHHHHHHHHHhhhCCcEEE
Confidence 2334455577877776544
No 198
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.30 E-value=1e-07 Score=78.42 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=31.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHh-------hCCCcEEEEcCccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELY-------SRGKLSYILDGDNL 69 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~-------~~~~g~i~~~g~~~ 69 (190)
++++|+|+||||||||++.|.|... .+..|.|.++|..+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 6899999999999999999999631 34667777777654
No 199
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.29 E-value=3.4e-06 Score=63.30 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=29.4
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
.++.++.|+|++||||||+++.|+..+ . ..+++.+.+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l-~----~~~i~~D~~~ 40 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL-R----LPLLSKDAFK 40 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH-T----CCEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc-C----CeEecHHHHH
Confidence 467899999999999999999998866 1 2355655554
No 200
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.29 E-value=1.2e-06 Score=74.67 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=56.5
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCc
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGL 103 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (190)
.+.-.++.++.|+|++||||||+++.|+..+ +.++++.+.+.. ... ....+...+ ..+.
T Consensus 252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~------------~~~---~~~~~~~~l-~~g~ 310 (416)
T 3zvl_A 252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLGS------------WQR---CVSSCQAAL-RQGK 310 (416)
T ss_dssp CSCCSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSCS------------HHH---HHHHHHHHH-HTTC
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHHH------------HHH---HHHHHHHHH-hcCC
Confidence 3445567899999999999999999887633 345666655421 111 111122222 2343
Q ss_pred ceeecccCccHHHHH----HHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613 104 ICIASLISPYRKDRD----ACRAMLPDSNFIEVFMNMPLELCEARD 145 (190)
Q Consensus 104 ~~~~~~lS~g~kqr~----iarall~~~~il~vllDEP~~~ld~~~ 145 (190)
..++........+|. +++..- ..+..++||.|...|-.|.
T Consensus 311 ~vIiD~~~~~~~~r~~~~~~~~~~~--~~~~~v~l~~~~e~l~~R~ 354 (416)
T 3zvl_A 311 RVVIDNTNPDVPSRARYIQCAKDAG--VPCRCFNFCATIEQARHNN 354 (416)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHT--CCEEEEEECCCHHHHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcC--CeEEEEEEeCCHHHHHHHH
Confidence 344444444444443 333332 2344459999998886664
No 201
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.27 E-value=8.6e-07 Score=69.58 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=29.9
Q ss_pred ccccccccccC---CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613 18 GRLERQKLLNQ---KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL 64 (190)
Q Consensus 18 ~~l~~~sl~i~---~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~ 64 (190)
.-+.+.++.+. +|.+++|.|++||||||+++.|+..+. . .+.+..
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~ 58 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIM 58 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCcee
Confidence 34667777776 899999999999999999999999884 3 344443
No 202
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.27 E-value=7.9e-07 Score=75.10 Aligned_cols=51 Identities=16% Similarity=0.017 Sum_probs=46.2
Q ss_pred cccCcceeccCc-ccccc--------------ccccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 5 GNSTNIFWQESP-IGRLE--------------RQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 5 l~~~~l~~~~~~-~~~l~--------------~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
+.++|+++.|.. +..++ |+.+.+.+|+.++|+|++|+|||||++.|++.+.
T Consensus 134 i~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 134 ILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp CCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred ceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 678999999975 56788 8999999999999999999999999999999874
No 203
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.27 E-value=3.1e-07 Score=80.10 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=45.5
Q ss_pred cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
++++...+....+++++++.+.+| +.|+||||+|||||+++|++.+ +.+.+.+++.++
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~ 100 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDF 100 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGG
T ss_pred HHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHH
Confidence 344444455556788999999999 8899999999999999999965 356777777654
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.24 E-value=5.5e-07 Score=68.97 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=29.0
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++--.+.+|.+++|+|+|||||||+++.|++.+
T Consensus 12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3556678899999999999999999999999854
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.21 E-value=7.3e-06 Score=70.20 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.1
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
++.+++++|+|||||||++..|+..+...+.-..+++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 588999999999999999999999885444333344433
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.19 E-value=8.8e-07 Score=74.99 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=33.7
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHH------------HhhCCCcEEEEcC
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKE------------LYSRGKLSYILDG 66 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~------------l~~~~~g~i~~~g 66 (190)
.+.+|..++|+|+||||||||+++|+|. + .+..|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi-~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI-DPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCC-CTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceee-cceeeeeeeCC
Confidence 5678999999999999999999999992 2 45677787776
No 207
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.19 E-value=1e-06 Score=68.14 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=23.2
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+.+++|+|+|||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999976
No 208
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.17 E-value=3.8e-06 Score=69.76 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=38.6
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
.+.|+++.--+++|+++.|.|++|+|||||+..++......+....+|.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4567777778999999999999999999999999887644444444544
No 209
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.17 E-value=1.6e-05 Score=64.33 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=33.0
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
....+.++.|+|||||||||+++.|+..+ + .+.++++.+.+.
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~-~--~~~~~Is~D~~R 70 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET-Q--GNVIVIDNDTFK 70 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHT-T--TCCEEECTHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEEechHhH
Confidence 44568899999999999999999998754 2 355778876554
No 210
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.17 E-value=1.3e-06 Score=64.01 Aligned_cols=30 Identities=33% Similarity=0.405 Sum_probs=24.6
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+++.+| +.+|+|||||||||++.+|.-.+
T Consensus 18 ~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 4445554 88999999999999999998655
No 211
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=5e-07 Score=74.54 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=42.6
Q ss_pred cCcceeccCccccccccccccCCccE--EEEECCCCCcHHHHHHHHHHHHh
Q 029613 7 STNIFWQESPIGRLERQKLLNQKGCV--VWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Gei--i~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
-++++..++...+++.++..++.|++ +.|.||+|+||||+++++++.+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34566667777889999999999998 99999999999999999999874
No 212
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.12 E-value=1.9e-06 Score=64.89 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=31.3
Q ss_pred ccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 22 RQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 22 ~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
++|+...+|.+++|+|++||||||+++.|+..+ .|..+++-++
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l----~g~~~id~d~ 44 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAEL----DGFQHLEVGK 44 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHHS----TTEEEEEHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHhc----CCCEEeeHHH
Confidence 568888999999999999999999999998862 1344555443
No 213
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.11 E-value=2.1e-05 Score=59.04 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=24.4
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++.+++|+|++||||||+++.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998866
No 214
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.08 E-value=1.1e-05 Score=70.37 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=33.7
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhh-C-CCcEEEEcCcc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYS-R-GKLSYILDGDN 68 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~-~~g~i~~~g~~ 68 (190)
.+.|.+++|+|.+||||||+.++|+..+.. . +....++|+++
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 467889999999999999999999999842 2 23445777776
No 215
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.06 E-value=8.1e-06 Score=67.27 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=25.3
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5578999999999999999999999874
No 216
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.03 E-value=1.9e-06 Score=71.95 Aligned_cols=38 Identities=26% Similarity=0.238 Sum_probs=34.7
Q ss_pred ccccccccccCCccE--EEEECCCCCcHHHHHHHHHHHHh
Q 029613 18 GRLERQKLLNQKGCV--VWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 18 ~~l~~~sl~i~~Gei--i~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
.+++.+++.+++|++ ++|+|++||||||++++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478889999999998 99999999999999999999873
No 217
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.02 E-value=2.3e-06 Score=65.28 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=26.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.+++|+|+|||||||++++|++ + |..+++.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l-----g~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L-----GVPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T-----TCCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C-----CCcccchHHH
Confidence 3789999999999999999987 3 3346666554
No 218
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.02 E-value=3.4e-06 Score=70.21 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL 64 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~ 64 (190)
+++.+++|+|+||||||||++.|.+.+. +..+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEE
Confidence 4588999999999999999999999873 33444443
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.02 E-value=2.4e-06 Score=65.34 Aligned_cols=28 Identities=32% Similarity=0.283 Sum_probs=25.5
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+|.+++|+|||||||||+++.|...+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999998865
No 220
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.02 E-value=2.2e-05 Score=63.27 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=27.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
.++.|+|++||||||+++.|+..+ .|..+++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r 38 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYR 38 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHH
Confidence 578999999999999999998732 245566665543
No 221
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=5.4e-06 Score=69.31 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=39.6
Q ss_pred ccccccccc--ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 17 IGRLERQKL--LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 17 ~~~l~~~sl--~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
...|+.+-- -+.+|+++.|.||||||||||+..++..+...+...++++++.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 344555533 4789999999999999999999999998754444456777654
No 222
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.99 E-value=4.1e-06 Score=62.64 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=23.9
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+|.+++|+|++||||||+++.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999998765
No 223
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.99 E-value=3.9e-05 Score=63.40 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=28.9
Q ss_pred CCcc--EEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEEEc
Q 029613 28 QKGC--VVWITGLSGSGKSTLAFSVNKELYSR-GKLSYILD 65 (190)
Q Consensus 28 ~~Ge--ii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~~~ 65 (190)
..+. .+.|+||+|+||||+++.+++.+... +...++++
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 4456 89999999999999999999987433 23444554
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.99 E-value=7.6e-06 Score=67.06 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=38.9
Q ss_pred ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
+.+.|+++.--+++|+++.|.|++|+|||||+..++......+...++|..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 355678887779999999999999999999999888655333444455543
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.97 E-value=3.7e-06 Score=64.01 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+++|+|+|||||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 689999999999999999998 5
No 226
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.96 E-value=2.5e-06 Score=70.99 Aligned_cols=52 Identities=17% Similarity=0.050 Sum_probs=37.5
Q ss_pred ccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCc
Q 029613 6 NSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKL 60 (190)
Q Consensus 6 ~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g 60 (190)
+++++...++. ..+++++++++. .++|+|++|||||||++.|.|.-. +.+.|
T Consensus 10 ~l~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~ 65 (360)
T 3t34_A 10 KIQRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (360)
T ss_dssp HTTTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSS
T ss_pred HHHHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCC
Confidence 46677777753 468999999998 899999999999999999999321 44554
No 227
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.92 E-value=4.3e-06 Score=71.27 Aligned_cols=45 Identities=22% Similarity=0.116 Sum_probs=36.3
Q ss_pred cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
|+++|+ ++|+... .+++.+|++++|+||||||||||+++|++++.
T Consensus 7 l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 7 LELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 567777 6776532 24567899999999999999999999999773
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.91 E-value=7.8e-06 Score=62.85 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=25.3
Q ss_pred cccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
.++.+.+ .+.+|+|||||||||++.+|.-.+.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444555 4899999999999999999976553
No 229
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.91 E-value=7.2e-06 Score=60.27 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=26.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
+++|+|++||||||+++.|+..+. ..+++.+.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d~~~ 36 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK-----YPIIKGSSFE 36 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC-----CCEEECCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CeeecCcccc
Confidence 789999999999999999998762 2256665543
No 230
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.90 E-value=4.6e-05 Score=63.15 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=34.0
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhh------CCCcEEEEcCcc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYS------RGKLSYILDGDN 68 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~------~~~g~i~~~g~~ 68 (190)
-+++|+++.|.|++|||||||+..++..... .+.+.++++.+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5789999999999999999999999886322 245567776654
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=1.6e-05 Score=62.65 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=30.9
Q ss_pred ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
++++++...+| +.|+||||+||||++++|++.+. ...+.+++.++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~---~~~~~i~~~~~~ 82 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSDFV 82 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT---CCEEEECSCSST
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC---CCEEEEeHHHHH
Confidence 34444555555 88999999999999999999762 224667766553
No 232
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.89 E-value=4.9e-05 Score=63.61 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=28.0
Q ss_pred CccE-EEEECCCCCcHHHHHHHHHHHHhh----------CCCcEEEEcCcc
Q 029613 29 KGCV-VWITGLSGSGKSTLAFSVNKELYS----------RGKLSYILDGDN 68 (190)
Q Consensus 29 ~Gei-i~L~G~nGsGKSTLlr~l~g~l~~----------~~~g~i~~~g~~ 68 (190)
.|.. ++|+|+||||||||++.|+|.... +..+.+.++|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 3444 899999999999999999985421 334667777654
No 233
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.86 E-value=1.1e-05 Score=63.08 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=25.0
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
-.+|.+++|+|++||||||+++.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999999865
No 234
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.85 E-value=4.1e-05 Score=62.86 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=33.9
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhC------CCcEEEEcCcc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSR------GKLSYILDGDN 68 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~------~~g~i~~~g~~ 68 (190)
-+++|+++.|.|++|||||||+..++.....+ +...++++.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 57899999999999999999999998764333 45566776553
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.85 E-value=3e-05 Score=71.23 Aligned_cols=43 Identities=21% Similarity=0.411 Sum_probs=33.5
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
++.+.+|+.+.|+||||||||||+++|++.+ +...+.+++.++
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~~l 274 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEchHh
Confidence 4468899999999999999999999999965 233455555443
No 236
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.84 E-value=7.5e-06 Score=68.54 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=41.6
Q ss_pred cccCccHHHH-------HHHHHhCCC-CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613 108 SLISPYRKDR-------DACRAMLPD-SNFIEVFMNMPLELCEARDPKGLYKLARAG 156 (190)
Q Consensus 108 ~~lS~g~kqr-------~iarall~~-~~il~vllDEP~~~ld~~~~~~~~~~~~~~ 156 (190)
..+|+||+|| ++|++++.+ |+++ +||||+++||......+.+.+.+.
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~l--llDEp~~~LD~~~~~~l~~~l~~~ 333 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECI--ILDEPTVYLDENRRAKLAEIFRKV 333 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEE--EEESTTTTCCHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeE--EEeCCCCcCCHHHHHHHHHHHHHh
Confidence 4699999997 257888899 9999 999999999999999999998863
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.83 E-value=0.00015 Score=62.23 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=32.9
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
++.++.++|++|+||||++..|+..+...+.-...++.+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 57899999999999999999999988655555556666544
No 238
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.83 E-value=1.3e-05 Score=59.94 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.7
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
+|.+++|.|++||||||+++.|+..+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998773
No 239
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.83 E-value=4.2e-05 Score=61.40 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++..+.|.||+|+||||+++++++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999865
No 240
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.82 E-value=1.3e-05 Score=59.79 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=25.2
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
....+.+++|+|++||||||+++.|+..+
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34567889999999999999999998765
No 241
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.81 E-value=2.5e-05 Score=58.81 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=27.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEEcC
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYILDG 66 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~~g 66 (190)
.+++|+|++|||||||++.|.+.+...+ .+.+..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5899999999999999999999874332 34455544
No 242
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.77 E-value=1.4e-05 Score=59.44 Aligned_cols=33 Identities=45% Similarity=0.552 Sum_probs=26.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.++|+|++||||||+++.|+..+. ..+++.+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccHH
Confidence 589999999999999999998762 246666554
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.77 E-value=1.8e-05 Score=59.07 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=27.4
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.+.+++|+|++||||||+++.|+..+. ..+++.+.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~-----~~~i~~d~~ 39 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK-----RILYDSDKE 39 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC-----CCEEEHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEChHH
Confidence 367899999999999999999998661 225555544
No 244
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.74 E-value=5.4e-06 Score=62.88 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=30.4
Q ss_pred eeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613 11 FWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 11 ~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
.|+|++. ++++++++..++.. ++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 4556553 68899999988875 68999999999999999875
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.74 E-value=1.6e-05 Score=58.20 Aligned_cols=20 Identities=50% Similarity=0.680 Sum_probs=18.7
Q ss_pred cEEEEECCCCCcHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSV 50 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l 50 (190)
.+++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.74 E-value=1.9e-05 Score=62.19 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.9
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+.+++|.||+||||||+++.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999866
No 247
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.74 E-value=4.3e-05 Score=69.88 Aligned_cols=111 Identities=17% Similarity=0.061 Sum_probs=62.2
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC--c-EEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHH-Hc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK--L-SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFA-DA 101 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~--g-~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 101 (190)
.+..|+.+.|+||+||||||++.++.... .... | .+.+- . .......... ..++..+. ..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~-~~~~~~g~~ilvl-----~--------P~r~La~q~~--~~l~~~~~~~v 168 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFD-EMPHLENTQVACT-----Q--------PRRVAAMSVA--QRVAEEMDVKL 168 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHH-HCGGGGTCEEEEE-----E--------SCHHHHHHHH--HHHHHHTTCCB
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHh-ccccCCCceEEec-----C--------chHHHHHHHH--HHHHHHhCCch
Confidence 34678999999999999999988886643 2211 2 12210 0 0011111110 11111111 00
Q ss_pred Ccc--------------eeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCch-hhhhcChHHHHHHHH
Q 029613 102 GLI--------------CIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLE-LCEARDPKGLYKLAR 154 (190)
Q Consensus 102 ~~~--------------~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~-~ld~~~~~~~~~~~~ 154 (190)
+.. ..+...++|+.++. +++.++.+++++ ++|||.. .+|......++..+.
T Consensus 169 ~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~l--IlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 169 GEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCI--ILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp TTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEE--EECSGGGCCHHHHHHHHHHHHHH
T ss_pred hheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEE--EecCccccccchHHHHHHHHHHH
Confidence 000 01334678888884 777888888988 9999996 777554444444443
No 248
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.74 E-value=3.7e-06 Score=70.28 Aligned_cols=44 Identities=25% Similarity=0.073 Sum_probs=35.3
Q ss_pred ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.+.+.++...|+.+.+.++++|.+ +|+|++|+|||||++.|.+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 467888888888888888888876 89999999999999998763
No 249
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.74 E-value=3.7e-05 Score=58.52 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=26.6
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRG 58 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~ 58 (190)
++|.+++|+|++||||||+++.|+..+...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4688999999999999999999998774333
No 250
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.73 E-value=2.3e-05 Score=59.43 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.5
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
+|.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999774
No 251
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.73 E-value=0.00014 Score=60.64 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=34.4
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
+++|.++.|.|++|+|||||+..++......+...++++.+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 77999999999999999999999887665556667777764
No 252
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.72 E-value=2.1e-05 Score=62.42 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+++|+|||||||||+++.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999866
No 253
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.72 E-value=1.1e-05 Score=60.86 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.5
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
....+.+++|+|++||||||+++.|+..+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44567899999999999999999999866
No 254
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.72 E-value=3.9e-05 Score=57.24 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
+++|+|++||||||+++.|+..+...+....+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999998743343345555
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.72 E-value=2.3e-05 Score=59.67 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhC
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSR 57 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~ 57 (190)
.+|.+++|+|++||||||+++.|+..+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 468899999999999999999999877433
No 256
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.71 E-value=2.3e-05 Score=59.07 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999977
No 257
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.71 E-value=1.1e-05 Score=64.97 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=37.0
Q ss_pred CccccccccccccCCc-----------cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 15 SPIGRLERQKLLNQKG-----------CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~G-----------eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
|...+++.+...+..+ ..+.|+||+|+||||++++|++.+...+...+.++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 5555666666666554 589999999999999999999988433333445543
No 258
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.71 E-value=0.00014 Score=63.53 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
....+++++|.+||||||+++.|+..+...+.....|+.+++.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 3457899999999999999999998775444445556655543
No 259
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.69 E-value=2.8e-05 Score=58.11 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.6
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++.+++|+|++||||||+++.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 260
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.69 E-value=2.7e-05 Score=59.88 Aligned_cols=24 Identities=42% Similarity=0.429 Sum_probs=21.8
Q ss_pred CccEEEEECCCCCcHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
.+.+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 261
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.65 E-value=5.7e-05 Score=56.43 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL 64 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~ 64 (190)
+++|+|++||||||+++.|+..+...+-..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 689999999999999999998774334433333
No 262
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.65 E-value=2.2e-05 Score=58.14 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
++|..++|+|++|+|||||++.+.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999999874
No 263
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.65 E-value=3.4e-05 Score=58.30 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=23.6
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+|.+++|+|++||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 264
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.65 E-value=3.2e-05 Score=62.74 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=32.4
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
+.+.++..+.|.||+|+||||++++|++.+ +...+.+++.+
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~ 84 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE 84 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHH
Confidence 456888999999999999999999999865 34555665433
No 265
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.65 E-value=2e-05 Score=64.08 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=23.4
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.++.+++|+|+||+|||||++.|.|.
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345568999999999999999999985
No 266
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.64 E-value=5.8e-05 Score=56.63 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=23.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCc
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKL 60 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g 60 (190)
+++|.|++||||||+++.|...+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 68999999999999999999877443433
No 267
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.64 E-value=2.3e-05 Score=63.55 Aligned_cols=42 Identities=26% Similarity=0.456 Sum_probs=28.0
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
++-+++|.|++||||||+++.|...+...+.....++.+++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999998663222224456666654
No 268
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.63 E-value=3.2e-05 Score=58.33 Aligned_cols=35 Identities=40% Similarity=0.342 Sum_probs=27.4
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
+..+++|+|++||||||+++.|+.. |..+++.+++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~ 41 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL 41 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence 3468999999999999999998872 4456666554
No 269
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.63 E-value=3.6e-05 Score=58.29 Aligned_cols=23 Identities=48% Similarity=0.540 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+++|+|++||||||+++.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 270
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.62 E-value=4.1e-05 Score=56.36 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.4
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
=++++|+|++||||||+++.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999866
No 271
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.62 E-value=2.1e-05 Score=58.44 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=19.0
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++.+++|+|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999998765
No 272
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.62 E-value=4.2e-05 Score=58.88 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++|.+++|+|++||||||+++.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999866
No 273
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.62 E-value=0.00054 Score=56.28 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
..+..+.|.||+|+||||+++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999998773
No 274
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.60 E-value=1.7e-05 Score=60.42 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 275
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.59 E-value=5.2e-05 Score=57.50 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.1
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+.+++|+|++||||||+++.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999866
No 276
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.58 E-value=3.5e-05 Score=57.49 Aligned_cols=34 Identities=38% Similarity=0.404 Sum_probs=26.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.+++|+|++||||||+++.|+..+. ..+++.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG-----VGLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-----CCEEeCchH
Confidence 4689999999999999999998662 225665554
No 277
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.57 E-value=9.6e-05 Score=56.76 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=31.2
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
.+..+.|.||+|+||||+++.++..+...+...++++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 6789999999999999999999998754444445555443
No 278
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.56 E-value=6e-05 Score=59.45 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=30.6
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhC-----CCcEEEEcCcccc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSR-----GKLSYILDGDNLR 70 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~-----~~g~i~~~g~~~~ 70 (190)
...+++|+|++||||||+++.|+..+..+ +...+.++.+++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34689999999999999999998865321 2334566666654
No 279
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.55 E-value=4.5e-05 Score=57.27 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=20.1
Q ss_pred ccccccccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613 18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4678888887776 568999999999999999987
No 280
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.54 E-value=0.00011 Score=55.07 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=24.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRG 58 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~ 58 (190)
.+++|+|++|||||||+..|...+...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4799999999999999999999885433
No 281
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.54 E-value=4.7e-05 Score=56.03 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+++|+|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999866
No 282
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.54 E-value=6.5e-05 Score=55.97 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.6
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+.+++|+|++||||||+++.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 283
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.53 E-value=7.3e-05 Score=58.21 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.9
Q ss_pred cccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+-...+..++.|+||+||||+|.++.|+..+
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35566788899999999999999999999866
No 284
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.52 E-value=4.3e-05 Score=63.87 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=25.7
Q ss_pred cccccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613 21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
++..+++.+ .+.+|+|+|||||||++-+|+=
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 455666666 5889999999999999999974
No 285
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.52 E-value=6.8e-05 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999866
No 286
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.49 E-value=7e-05 Score=57.27 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 287
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.49 E-value=7.6e-05 Score=56.52 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.2
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
....+++|+|++||||||+++.|+..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 445689999999999999999998754
No 288
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.47 E-value=6.1e-05 Score=58.29 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.7
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++.+++|+|++||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
No 289
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.47 E-value=6.4e-05 Score=57.92 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.3
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+.+++|+|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999876
No 290
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.47 E-value=9e-05 Score=58.29 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.8
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
-.++.+++|+|++||||||+++.|+..+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3577899999999999999999998755
No 291
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.46 E-value=5.4e-05 Score=55.38 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
..++|+|+||+|||||++.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 292
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.43 E-value=0.00018 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYS 56 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~ 56 (190)
..+.|.||+|+|||||+++|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999997743
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.43 E-value=7.3e-05 Score=56.83 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 029613 33 VWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 33 i~L~G~nGsGKSTLlr~l~g~l 54 (190)
+.|+||||||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999987654
No 294
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.42 E-value=0.0002 Score=55.49 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=28.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~ 63 (190)
.+|.+++|.|++||||||+++.|...+...+...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 468899999999999999999999988544433333
No 295
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.42 E-value=0.00014 Score=61.02 Aligned_cols=37 Identities=27% Similarity=0.220 Sum_probs=29.1
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
.+..++|+|++||||||+++.|...+...+...+.+|
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5778899999999999999999987754444444554
No 296
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.41 E-value=7.9e-05 Score=63.04 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=25.2
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.+..+..++|+|+||+|||||+++|.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 35677889999999999999999999985
No 297
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.41 E-value=8.6e-05 Score=56.84 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997754
No 298
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.40 E-value=0.0001 Score=56.71 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=23.3
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+|..++|+|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999866
No 299
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.39 E-value=0.00011 Score=55.96 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=27.8
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
...+++|+|..||||||+++.|+..+ |..+++.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHH
Confidence 45789999999999999999998854 2345665444
No 300
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.36 E-value=9.7e-05 Score=63.07 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=29.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHh-----------hCCCcEEEEcCccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELY-----------SRGKLSYILDGDNL 69 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~-----------~~~~g~i~~~g~~~ 69 (190)
-.++|+|+||+|||||++.|.|... .+..|.+.++|..+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 4789999999999999999998532 13456677777644
No 301
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.35 E-value=9.9e-05 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.++|+|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 302
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.32 E-value=0.00015 Score=56.07 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998866
No 303
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.31 E-value=0.00019 Score=55.86 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.9
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+..++|+|++||||||+++.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999876
No 304
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.00042 Score=50.84 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=24.2
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
..+..+.|.||+|+||||+++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4456789999999999999999998774
No 305
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.29 E-value=0.00022 Score=57.99 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=27.9
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
.+..+.|.||+|+|||||+++|+..+...+...++++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4568899999999999999999998743333334443
No 306
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.28 E-value=8.9e-05 Score=55.18 Aligned_cols=22 Identities=41% Similarity=0.515 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 307
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.27 E-value=0.0011 Score=56.57 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=38.7
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCc
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGD 67 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~ 67 (190)
...|+.+.--+++|+++.|.|++|+|||||+..++..... .+...++|..+
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3456666656899999999999999999999999886633 34445666543
No 308
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.26 E-value=0.00034 Score=55.10 Aligned_cols=31 Identities=35% Similarity=0.431 Sum_probs=27.0
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCC
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGK 59 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~ 59 (190)
+|.+++|.|++||||||+++.|...+...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~ 56 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI 56 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 5889999999999999999999998854443
No 309
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.26 E-value=8.3e-05 Score=56.66 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=27.9
Q ss_pred cccccccccCCcc---EEEEECCCCCcHHHHHHHHHHHHh
Q 029613 19 RLERQKLLNQKGC---VVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 19 ~l~~~sl~i~~Ge---ii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
.++.+.-.+..|. .+.|.||+|+||||+++.++..+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444444 889999999999999999998773
No 310
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.25 E-value=0.00016 Score=58.10 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.4
Q ss_pred CccEEEEECCCCCcHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
...+++|+|++||||||+++.|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 311
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.25 E-value=0.00018 Score=55.06 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 312
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.24 E-value=0.00021 Score=55.05 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++.|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999866
No 313
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=0.00015 Score=59.22 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=31.3
Q ss_pred CccccccccccccCCc--cEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 15 SPIGRLERQKLLNQKG--CVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~G--eii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
+...+++.+...+..| ..+.|.||+|+||||+++++++.+.
T Consensus 41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344556666666655 4489999999999999999999874
No 314
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.23 E-value=0.00034 Score=54.19 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=26.7
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRG 58 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~ 58 (190)
+|.++.+.|++||||||.++.|...+...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999999886544
No 315
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.20 E-value=0.0027 Score=54.21 Aligned_cols=46 Identities=30% Similarity=0.383 Sum_probs=34.9
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEEEcCccc
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-GKLSYILDGDNL 69 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~~~g~~~ 69 (190)
++.-.+..+++++|++|+||||++-.|+..+... |.-...++.+..
T Consensus 94 ~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 94 NLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp CCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3333456799999999999999999999888555 666667776653
No 316
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.20 E-value=0.00029 Score=55.15 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYS 56 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~ 56 (190)
.+|.+++|.|++||||||+++.|...+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999988843
No 317
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.18 E-value=0.0002 Score=54.81 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.3
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+.+++|+|++||||||+++.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998854
No 318
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.18 E-value=0.0002 Score=64.39 Aligned_cols=31 Identities=26% Similarity=0.157 Sum_probs=26.3
Q ss_pred ccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++.++++..++|+|++|+|||||++.|.+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 4677899999999999999999999999865
No 319
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.17 E-value=0.00025 Score=56.45 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.6
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+.++.-+.|.||+|+||||++++++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999999865
No 320
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=0.00018 Score=66.07 Aligned_cols=43 Identities=23% Similarity=0.199 Sum_probs=33.4
Q ss_pred cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
.++.+.++..+.|+||||+|||||+++|++.+ . ...+.+++.+
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~-~--~~~i~v~~~~ 546 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-Q--ANFISIKGPE 546 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH-T--CCCCCCCCSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh-C--CCEEEEechH
Confidence 35667889999999999999999999999987 2 2334455443
No 321
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.13 E-value=0.00036 Score=54.47 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=26.3
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYS 56 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~ 56 (190)
-.+|.+++|.|++||||||+++.|...+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 357899999999999999999999998854
No 322
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.13 E-value=0.00021 Score=55.63 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
-.++|+|++|+|||||++.|.|.-
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 467999999999999999999854
No 323
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.11 E-value=0.00062 Score=49.91 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=24.0
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
..+..+.|.||+|+||||+++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456778999999999999999998773
No 324
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.09 E-value=0.0003 Score=58.34 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+++|+||+|||||||++.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999866
No 325
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.08 E-value=0.00073 Score=51.91 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=26.1
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i 62 (190)
|.+++|-|+.||||||+++.|...+ ..+...+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~ 33 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL-VKDYDVI 33 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-TTTSCEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HCCCCEE
Confidence 5689999999999999999999988 4444333
No 326
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.07 E-value=0.00048 Score=53.87 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
....-+.|.||+|+||||++++++..+. ...+.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~~~~ 74 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAGAE 74 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEETTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEechHH
Confidence 4455688999999999999999998762 2234555443
No 327
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.07 E-value=0.0044 Score=50.95 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
..+..+.|.||+|+||||+++.++..+.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998763
No 328
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.07 E-value=0.00053 Score=63.21 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=30.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
..+.|+||+|+|||+++++|+..+...+...+.++...+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 478899999999999999999988543445566765544
No 329
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.06 E-value=0.00023 Score=56.64 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++|+|++|||||||++.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 330
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.04 E-value=0.00018 Score=56.78 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=23.1
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.....| +.|.||+|+||||++++|+..+
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 344444 7799999999999999999876
No 331
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.03 E-value=0.00082 Score=50.64 Aligned_cols=31 Identities=32% Similarity=0.195 Sum_probs=22.3
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHHhhCCC
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGK 59 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~ 59 (190)
+|.++.++|+.||||||++.-++..+...+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~ 32 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKK 32 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4889999999999999998444433323343
No 332
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.02 E-value=0.00048 Score=53.48 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=25.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
.+|.++.+.|++||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999999873
No 333
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.01 E-value=0.00038 Score=54.31 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=23.4
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+|.+++|.|..||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999866
No 334
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.01 E-value=0.00073 Score=56.04 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=29.2
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
.....+++|+|++|+|||||+..|+..+...+.-...++
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 345668999999999999999999987744444333443
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00042 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=21.6
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
+.-.++|+|++|+|||||++.+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3347899999999999999999874
No 336
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.00029 Score=54.82 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=24.1
Q ss_pred cccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613 23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
+-..+..|+.+.+.|++||||||++..+..
T Consensus 69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 69 ILEAISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 334456799999999999999998877653
No 337
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.98 E-value=0.00042 Score=57.04 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++.|+||+||||||+++.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 338
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.98 E-value=0.00046 Score=49.72 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 339
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.97 E-value=0.001 Score=53.40 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYS 56 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~ 56 (190)
.++..+.|.||+|+||||++++++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44557899999999999999999988743
No 340
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.94 E-value=0.00052 Score=49.19 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988763
No 341
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.94 E-value=0.00035 Score=57.32 Aligned_cols=37 Identities=35% Similarity=0.282 Sum_probs=30.0
Q ss_pred CccccccccccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613 15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
.....+++..+.+ .|.-+.|+|+||+||||++..+.+
T Consensus 130 ~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 130 ARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp CEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3445667766666 788999999999999999998876
No 342
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.94 E-value=0.00053 Score=56.79 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=23.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++.++.|+||+|||||||+..|+..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356799999999999999999998754
No 343
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.93 E-value=0.00055 Score=49.01 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 344
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.92 E-value=0.00055 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 345
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.92 E-value=0.00049 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 346
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.90 E-value=0.0006 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
-++++|++|+|||||++.+.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 347
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.89 E-value=0.0007 Score=57.86 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.4
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999774
No 348
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.88 E-value=0.00061 Score=49.04 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 349
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.88 E-value=0.00062 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++++|++|+|||||++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998774
No 350
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.88 E-value=0.00063 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 351
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.87 E-value=0.00063 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 352
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.87 E-value=0.00084 Score=54.17 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=23.8
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++...+.|.||+|+|||+|+++|+..+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445677888999999999999999876
No 353
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.87 E-value=0.00062 Score=52.36 Aligned_cols=35 Identities=31% Similarity=0.272 Sum_probs=26.3
Q ss_pred ccccccccccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
..++...+.+ .|..+.|+||+|||||||+..|+..
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3444444443 5788999999999999999988653
No 354
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.87 E-value=0.00065 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999763
No 355
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.86 E-value=0.0014 Score=49.87 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=26.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL 64 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~ 64 (190)
+++|-|..||||||.++.|...+...|...+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 578889999999999999999886655544443
No 356
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.85 E-value=0.0011 Score=55.36 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=33.6
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
-+++|.++.|.|++|+|||||+..++......+...++++.+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 467999999999999999999988877654455556677654
No 357
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.00055 Score=49.37 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g 52 (190)
-++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999886
No 358
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.85 E-value=0.0006 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 359
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.85 E-value=0.0005 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4789999999999999998764
No 360
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.84 E-value=0.00069 Score=57.90 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=30.8
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
..+++++|++|+||||++..|++.+...+.-..+++.+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 4699999999999999999999988544444556665543
No 361
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.84 E-value=0.00079 Score=56.28 Aligned_cols=23 Identities=43% Similarity=0.496 Sum_probs=21.0
Q ss_pred ccEEEEECCCCCcHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g 52 (190)
|..++|+|.+|+|||||++.|.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35689999999999999999998
No 362
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.84 E-value=0.00075 Score=49.18 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
++.-.++|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998763
No 363
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.83 E-value=0.00072 Score=55.51 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.0
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+.+++|+||+|||||||+..|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4688999999999999999998754
No 364
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0036 Score=53.51 Aligned_cols=41 Identities=20% Similarity=0.124 Sum_probs=30.0
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.+++..=+.|.||+|+|||+|++++++.+ +.--+.+.+.++
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l 251 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQL 251 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhh
Confidence 34555667899999999999999999976 233455555444
No 365
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.82 E-value=0.00066 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999874
No 366
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.82 E-value=0.0013 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.3
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..++.|+||+|||||||+..|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4688999999999999999998755
No 367
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.0012 Score=50.93 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=28.8
Q ss_pred Ccccccccccc-ccCCccEEEEECCCCCcHHHHHHHHH
Q 029613 15 SPIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFSVN 51 (190)
Q Consensus 15 ~~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~l~ 51 (190)
.+.+.|+++-- -+++|+++.|.|++|+||||++--++
T Consensus 14 TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 14 SGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 34555666533 47899999999999999999987654
No 368
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.81 E-value=0.00076 Score=48.52 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=23.6
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
...+.-+.|.||+|+|||+++++|....
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3556678999999999999999998754
No 369
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.81 E-value=0.00073 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999998854
No 370
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.81 E-value=0.00076 Score=48.52 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 371
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0029 Score=53.58 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=28.9
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
+.+..=+.|.||+|+|||+|++++++.+ +..-+.+.+.++
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l 218 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAEL 218 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHh
Confidence 4444447799999999999999999976 333455555444
No 372
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.80 E-value=0.00036 Score=55.17 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=23.6
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++.+++|.|+.||||||+++.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999988755
No 373
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.80 E-value=0.00077 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 374
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0032 Score=53.73 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=29.3
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
+.+..=+.|.||+|+|||++++++++.+ +...+.+++.++
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l 242 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEF 242 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchh
Confidence 4445557899999999999999999976 333455555443
No 375
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.80 E-value=0.00079 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 376
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.78 E-value=0.0008 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999873
No 377
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.78 E-value=0.0008 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45799999999999999999874
No 378
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.78 E-value=0.0019 Score=50.32 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=27.0
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL 64 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~ 64 (190)
.+|.++.++|+.|+||||++.-++..+...+.-.+++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5689999999999999998777666554444444444
No 379
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.77 E-value=0.00061 Score=49.26 Aligned_cols=21 Identities=48% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g 52 (190)
-++|+|++|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999864
No 380
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.77 E-value=0.00063 Score=54.51 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.++|+|++|+|||||++.++|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999984
No 381
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.76 E-value=0.00086 Score=48.45 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.7
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.--++++|++|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999763
No 382
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.75 E-value=0.0017 Score=55.86 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=29.0
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
....++.++|.+||||||+++.|+..+.........++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 445689999999999999999999877544444445443
No 383
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.74 E-value=0.00099 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.7
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..-++|+|++||||||+++.|+..+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998866
No 384
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.74 E-value=0.00092 Score=48.01 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 029613 33 VWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 33 i~L~G~nGsGKSTLlr~l~g~l 54 (190)
++++|++|+|||||++.+.+--
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999997643
No 385
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.74 E-value=0.00043 Score=49.94 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g 52 (190)
-++|+|++|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999875
No 386
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.73 E-value=0.002 Score=52.48 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=25.1
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHHh-hCC
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKELY-SRG 58 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l~-~~~ 58 (190)
+.-+.|.||+|+|||+|+++|+..+. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g 181 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG 181 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999998775 444
No 387
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0016 Score=55.68 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=28.9
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
.+.+..=+.|.||+|+|||+|+++|++.+ +.-.+.+.+.+
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~ 250 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASG 250 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhh
Confidence 34555667899999999999999999976 23334444433
No 388
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.72 E-value=0.00095 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45789999999999999999874
No 389
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.72 E-value=0.00096 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 390
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.72 E-value=0.00062 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=21.4
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.--.++|+|++|+|||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999763
No 391
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.72 E-value=0.00092 Score=50.90 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.3
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
--.++|+|++|+|||||++.|++.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3588999999999999999998865
No 392
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.72 E-value=0.00095 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++++|.+|+|||||++.+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999874
No 393
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.00097 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999998874
No 394
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.71 E-value=0.0015 Score=53.85 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=30.4
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhC--CCcEEEEcCcc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSR--GKLSYILDGDN 68 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~--~~g~i~~~g~~ 68 (190)
+.+| ++-|.||+|||||||+-.++...... +...++++.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 6789 89999999999999966665544332 55567777654
No 395
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.71 E-value=0.00078 Score=54.88 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=25.5
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999988864
No 396
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.71 E-value=0.00075 Score=53.04 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.9
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.--++|+|.+|+|||||++.|.|.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999873
No 397
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.70 E-value=0.00087 Score=56.11 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.++|+|++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999986
No 398
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.70 E-value=0.00089 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998863
No 399
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.0012 Score=54.02 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=24.0
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+..-+.|.||+|+|||+|+++++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3455778899999999999999999865
No 400
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.70 E-value=0.00088 Score=48.81 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999753
No 401
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.69 E-value=0.0011 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELY 55 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~ 55 (190)
.+.|.||+|+||||+++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998763
No 402
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.69 E-value=0.00067 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998774
No 403
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.69 E-value=0.00057 Score=49.81 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998753
No 404
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.69 E-value=0.00099 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
-.++|+|++|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998743
No 405
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.69 E-value=0.0011 Score=48.48 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998874
No 406
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.68 E-value=0.0004 Score=59.61 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=27.2
Q ss_pred cccccccCCccE--EEEECCCCCcHHHHHHHHHHHH
Q 029613 21 ERQKLLNQKGCV--VWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 21 ~~~sl~i~~Gei--i~L~G~nGsGKSTLlr~l~g~l 54 (190)
+.+...+..|.+ +.|.||+|+||||++++|+..+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 445555556664 8899999999999999999865
No 407
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.67 E-value=0.0005 Score=50.93 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.2
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
+.-.++|+|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998763
No 408
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.67 E-value=0.0012 Score=51.00 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=25.0
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+++...+.|.||+|+||||++.+|+..+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 35555679999999999999999999977
No 409
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.66 E-value=0.0011 Score=49.60 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 410
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.65 E-value=0.001 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 411
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998864
No 412
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.65 E-value=0.0012 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.232 Sum_probs=19.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999776653
No 413
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.64 E-value=0.0031 Score=49.28 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=30.8
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
..+.-++.++|..|+||||++..|+..+. .+.-...++.+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 34567889999999999999999998775 55445556544
No 414
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0042 Score=53.44 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=30.3
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL 69 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~ 69 (190)
.+.+..=+.|.||+|+|||+|+++|++.+ +.--+.+.+.++
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L 279 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSEL 279 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHh
Confidence 45566667899999999999999999976 233445555444
No 415
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.64 E-value=0.0012 Score=49.00 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 416
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.64 E-value=0.00071 Score=49.86 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3689999999999999998774
No 417
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.64 E-value=0.00096 Score=54.18 Aligned_cols=22 Identities=36% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.++|+|++|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 418
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.63 E-value=0.00097 Score=54.21 Aligned_cols=24 Identities=33% Similarity=0.202 Sum_probs=21.3
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--+++|+|++|+|||||++.|.|.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 347899999999999999999884
No 419
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.63 E-value=0.0011 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 420
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0058 Score=52.14 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=30.9
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR 70 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~ 70 (190)
.+.+..=+.|.||+|+|||+|+++|++.+ +.--+.+.+.++.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELI 253 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGC
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhh
Confidence 34455558899999999999999999976 3334566665543
No 421
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.62 E-value=0.0013 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.8
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+.-+.|.||+|+||||+++.++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999877
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.62 E-value=0.0012 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998763
No 423
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.62 E-value=0.0012 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
No 424
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.62 E-value=0.0034 Score=53.84 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=25.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~ 68 (190)
-+.|+||+|+||||++++|++.+ . ...+.++...
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l-~--~~~~~v~~~~ 85 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLA-N--APFIKVEATK 85 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT-T--CCEEEEEGGG
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc-C--CCceeecchh
Confidence 47899999999999999999977 2 2344555433
No 425
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.61 E-value=0.0012 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998864
No 426
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.61 E-value=0.0015 Score=51.60 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=24.0
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+...+.|.||+|+||||++++++..+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3456678899999999999999999865
No 427
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.0011 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 45889999999999999999873
No 428
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.60 E-value=0.0014 Score=53.86 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=24.2
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+|..+.|.||+|+||||+++.++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999987
No 429
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.60 E-value=0.0026 Score=55.40 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=29.7
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
.+..+++|+|++||||||++..|+..+...+.-...++.+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4567999999999999999999998775445545555554
No 430
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.60 E-value=0.0013 Score=49.46 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.3
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
-.|.-+.|.|+||+||||++..+..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4577889999999999999987754
No 431
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.59 E-value=0.00086 Score=55.59 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
...-.++++|+||+|||||++.|++.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999874
No 432
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.59 E-value=0.0014 Score=55.55 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.4
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+++|+||+|||||||+..|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999876
No 433
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.59 E-value=0.0011 Score=52.11 Aligned_cols=39 Identities=21% Similarity=0.091 Sum_probs=28.2
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~ 65 (190)
...+.-+.|.|++|+|||++++.|.......+...+.++
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 345667889999999999999999886532223345554
No 434
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.0012 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35799999999999999999874
No 435
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.58 E-value=0.0017 Score=52.88 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.4
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+..-+.|.||+|+|||+++++++..+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 445678999999999999999999865
No 436
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.58 E-value=0.0012 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.0
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
++..+.|.||+|+||||++++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999999865
No 437
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.57 E-value=0.0014 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998763
No 438
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.57 E-value=0.0024 Score=54.66 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=38.3
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
.+.|+.+.--+++|+++.|.|++|+|||||+.-++......+...++|..+
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 345666655689999999999999999999988877653345556666543
No 439
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.57 E-value=0.0014 Score=49.49 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=24.9
Q ss_pred cccccccccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
...+..|.-...--++++|++|+|||||++.+.+.
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 44555555555567899999999999999999873
No 440
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.56 E-value=0.0018 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.2
Q ss_pred ccEEEEECCCCCcHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g 52 (190)
.--++++|++|+|||||++.+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999876
No 441
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.56 E-value=0.00041 Score=56.52 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=30.0
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+++.+...+..|.-+.|.||+|+|||++++.++..+
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34455555555567789999999999999999999866
No 442
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.54 E-value=0.001 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.++|+|.+|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999885
No 443
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.54 E-value=0.0013 Score=49.36 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+.--++|+|++|+|||||++.+.+.-
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 344568999999999999999998743
No 444
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.54 E-value=0.0015 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999999863
No 445
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.53 E-value=0.0011 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.++|+|++|||||||++.|.+.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 446
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.53 E-value=0.0014 Score=48.06 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g 52 (190)
-++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999885
No 447
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0016 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.8
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.--++|+|++|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998874
No 448
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0016 Score=48.18 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 449
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0014 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
--++|+|++|+|||||++.+.+.-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 357899999999999999998854
No 450
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.51 E-value=0.0016 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.8
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.--++|+|++|+|||||++.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999999863
No 451
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.51 E-value=0.0016 Score=48.84 Aligned_cols=22 Identities=41% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|.+|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999873
No 452
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.51 E-value=0.0013 Score=56.79 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=30.0
Q ss_pred cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+++.+ +.+-+|+.++|+|++|+|||||++.|+...
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 3445555 455679999999999999999999998866
No 453
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.50 E-value=0.0016 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999874
No 454
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.49 E-value=0.0016 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=21.1
Q ss_pred cCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 27 NQKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 27 i~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++.--++|+|++|+|||||++.+.+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 344567899999999999999999763
No 455
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.49 E-value=0.0014 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
--++|+|++|+|||||++.+.+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467999999999999999987643
No 456
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.49 E-value=0.0016 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.0
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
..--++|+|++|+|||||++.+.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999864
No 457
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.48 E-value=0.0015 Score=49.11 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 458
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.48 E-value=0.0013 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 459
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.46 E-value=0.0014 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.++|+|.+|+|||||++.+.|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999884
No 460
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.46 E-value=0.002 Score=53.28 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
.+..-+.|.||+|+||||++++|+..+ +...+.++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~ 151 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISAS 151 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehH
Confidence 456678999999999999999998865 2334445443
No 461
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.45 E-value=0.0012 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
++.--++++|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4456789999999999999999875
No 462
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.43 E-value=0.0031 Score=53.96 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=29.2
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~ 67 (190)
...++.-+.|.||+|+||||++++++..+ ......+.+++.
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~ 99 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGS 99 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGG
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHH
Confidence 33455678899999999999999999987 322333444443
No 463
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.43 E-value=0.002 Score=53.35 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.++.-+.|.||+|+||||++++++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344558899999999999999999876
No 464
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.42 E-value=0.002 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46789999999999999888763
No 465
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.41 E-value=0.0019 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++++|++|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998874
No 466
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.41 E-value=0.002 Score=49.22 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.9
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 467
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.41 E-value=0.0014 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.++|+|.+|||||||++.|.|.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999884
No 468
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.40 E-value=0.0017 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 469
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.40 E-value=0.0014 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.2
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
++.--++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4556789999999999999998763
No 470
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0015 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.4
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g 52 (190)
++.--++|+|++|+|||||++.+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4455789999999999999999885
No 471
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.38 E-value=0.002 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.5
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+--.++|+|.+|+|||||+..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998765
No 472
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.38 E-value=0.0021 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998874
No 473
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.37 E-value=0.00092 Score=50.24 Aligned_cols=22 Identities=45% Similarity=0.469 Sum_probs=19.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g 52 (190)
-.++|+|++|+|||||++.+.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3679999999999999999864
No 474
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.36 E-value=0.002 Score=53.42 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.6
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
+...+.|.||+|+||||++++|+..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999866
No 475
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.35 E-value=0.00093 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999877
No 476
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.33 E-value=0.0011 Score=52.68 Aligned_cols=21 Identities=43% Similarity=0.442 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g 52 (190)
-++|+|.+|+|||||++.|.+
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998754
No 477
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.33 E-value=0.0015 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998753
No 478
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.33 E-value=0.0021 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999873
No 479
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.32 E-value=0.0014 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.6
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.--++++|++|+|||||++.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998763
No 480
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.31 E-value=0.0018 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.++|+|++|||||||++.|.|.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTS
T ss_pred CeEEEEcCCCCCHHHHHHHHHCC
Confidence 46899999999999999999884
No 481
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.30 E-value=0.0064 Score=46.12 Aligned_cols=37 Identities=22% Similarity=0.113 Sum_probs=26.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL 64 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~ 64 (190)
.+|.++.++|+.||||||.+--++..+...+.-...+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 5689999999999999988776665553334333333
No 482
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.30 E-value=0.0018 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNK 52 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g 52 (190)
--++|+|++|+|||||++.+.+
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3578999999999999998876
No 483
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.002 Score=53.12 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.8
Q ss_pred cccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 25 LLNQKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.+.+|.++.|.||+|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34667888899999999999999998764
No 484
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.30 E-value=0.0013 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=9.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998764
No 485
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.29 E-value=0.0023 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999874
No 486
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0013 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 029613 32 VVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 32 ii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 487
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.29 E-value=0.00084 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.1
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.-.++|+|++|+|||||++.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457899999999999999998874
No 488
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.28 E-value=0.0023 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~l 54 (190)
..+.|.||+|+||||+++.++..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468899999999999999998765
No 489
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.27 E-value=0.0017 Score=49.93 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.8
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.-.++|+|++|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998763
No 490
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.25 E-value=0.002 Score=48.11 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=20.3
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
.+.--++|+|++|+|||||++.+.+.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34456899999999999999998753
No 491
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.24 E-value=0.0016 Score=48.40 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.0
Q ss_pred CccEEEEECCCCCcHHHHHHHHHHH
Q 029613 29 KGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 29 ~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
+.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998763
No 492
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.24 E-value=0.0039 Score=53.91 Aligned_cols=50 Identities=20% Similarity=0.092 Sum_probs=36.4
Q ss_pred ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEEEcCc
Q 029613 18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-GKLSYILDGD 67 (190)
Q Consensus 18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~~~g~ 67 (190)
+.|+.+.--+.+|+++.|.|++|+|||||+..++-..... +...+++..+
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 4455554458999999999999999999998887665333 4445566543
No 493
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.21 E-value=0.0012 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.3
Q ss_pred ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613 30 GCVVWITGLSGSGKSTLAFSVNKEL 54 (190)
Q Consensus 30 Geii~L~G~nGsGKSTLlr~l~g~l 54 (190)
.--++|+|++|+|||||++.+.+.-
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988753
No 494
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.20 E-value=0.0012 Score=47.47 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=21.5
Q ss_pred CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613 28 QKGCVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 28 ~~Geii~L~G~nGsGKSTLlr~l~g~ 53 (190)
..+.-+.|.|++|+|||++++.|...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 44556889999999999999988653
No 495
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.20 E-value=0.0027 Score=47.74 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 45799999999999999998763
No 496
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.20 E-value=0.002 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999763
No 497
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.20 E-value=0.0074 Score=55.37 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=28.3
Q ss_pred ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613 26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66 (190)
Q Consensus 26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g 66 (190)
.+.+..-+.|.||+|+|||+|+|++++.+ +...+.+++
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~ 271 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEh
Confidence 34555668899999999999999999854 334455554
No 498
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.18 E-value=0.0021 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|.+|+|||||++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46889999999999999988774
No 499
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.17 E-value=0.002 Score=51.39 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
-.++|+|.+|+|||||++.|.|.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 46899999999999999999884
No 500
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0032 Score=48.07 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 029613 31 CVVWITGLSGSGKSTLAFSVNKE 53 (190)
Q Consensus 31 eii~L~G~nGsGKSTLlr~l~g~ 53 (190)
--++|+|++|+|||||++.+.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999999873
Done!