BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029614
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFS-AQAAPK 133
TT GLKY D+ EG G A+ G TV + G +K + ++N F+
Sbjct: 5 TTESGLKYEDLTEGSGAEARAGQTVSVHYT---GWLTDGQKFDSSKDRNDPFAFVLGGGH 61
Query: 134 PPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQV 184
+GMKVGG R + +PP+ GY + IPP AT +ELL V
Sbjct: 62 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 113
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFS-AQAAPK 133
TT GLKY D+ EG G A+ G TV + G +K + ++N F+
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVH---YTGWLTDGQKFDSSKDRNDPFAFVLGGGM 157
Query: 134 PPPAMYSVTEGMKVGGKRTVIVPPEAGYDKK-RMNEIPPGATFELNIELLQV 184
+GMKVGG R + +PP+ GY + IPP AT +ELL V
Sbjct: 158 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFS-AQAAPK 133
TT GLKY D+ EG G A+ G TV + G +K + ++N F+
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVH---YTGWLTDGQKFDSSKDRNDPFAFVLGGGM 157
Query: 134 PPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQV 184
+GMKVGG R + +PP+ GY + IPP AT +ELL V
Sbjct: 158 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFS-AQAAPK 133
TT GLKY D+ EG G A+ G TV + G +K + ++N F+
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVH---YTGWLTDGQKFDSSKDRNDPFAFVLGGGM 157
Query: 134 PPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQV 184
+GMKVGG R + +PP+ GY + IPP AT +ELL V
Sbjct: 158 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFS-AQAAPK 133
TT GLKY D+ EG G A+ G TV + G +K + ++N F+
Sbjct: 25 TTESGLKYEDLTEGSGAEARAGQTVSVHYT---GWLTDGQKFDSSKDRNDPFAFVLGGGM 81
Query: 134 PPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQV 184
+GMKVGG R + +PP+ GY + IPP AT +ELL V
Sbjct: 82 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 133
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFS-AQAAPK 133
TT GLKY D+ EG G A+ G TV + G +K + ++N F+
Sbjct: 9 TTESGLKYEDLTEGSGAEARAGQTVSVHYT---GWLTDGQKFDSSKDRNDPFAFVLGGGM 65
Query: 134 PPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQV 184
+GMKVGG R + +PP+ GY + IPP AT +ELL V
Sbjct: 66 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 117
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFS-AQAAPK 133
TT GLKY D+ EG G A+ G TV + G +K + ++N F
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVH---YTGWLTDGQKFDSSKDRNDPFEFVLGGGM 157
Query: 134 PPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQV 184
+GMKVGG R + +PP+ GY + IPP AT +ELL V
Sbjct: 158 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKP 134
TT GLKY D+ EG G A+ G TV + G ++ D +
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVH--YTGWLTDGQKFGSSKDRNDPFAFVLGGGMV 158
Query: 135 PPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQV 184
+GMKVGG R + +PP+ GY + IPP AT +ELL V
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 143 EGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVK 185
+GM VG KR +I+PP GY K+ +IPP +T NI+LL+++
Sbjct: 80 KGMCVGEKRKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIR 122
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFS-AQAAPK 133
TT GLKY D+ EG G A+ G TV + G +K + ++N F+
Sbjct: 5 TTESGLKYEDLTEGSGAEARAGQTVSVH---YTGWLTDGQKFDSSKDRNDPFAFVLGGGM 61
Query: 134 PPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQV 184
+GMKVGG R + +PP+ GY IPP AT +ELL V
Sbjct: 62 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELLDV 113
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 153 VIVPPEAGYDKKRMNEIPPGATFELNIELLQVKP 186
+++PPE Y K + IPP +T ++ELL VKP
Sbjct: 192 LVIPPELAYGKAGVPGIPPNSTLVFDVELLDVKP 225
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 153 VIVPPEAGYDKKRMNEIPPGATFELNIELLQVK 185
+++PPE Y K + IPP +T ++ELL VK
Sbjct: 192 LVIPPELAYGKAGVPGIPPNSTLVFDVELLDVK 224
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 144 GMKVGGKRTVIVPPEAGYDKKRM-NEIPPGATFELNIELLQVK 185
GM G KR +++P E GY ++ +IP GAT +ELL+++
Sbjct: 55 GMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIE 97
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 113 ERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPG 172
E+ E + + + SA A P+ + + E +KV G +P + G ++ R+N +PP
Sbjct: 71 EKLVELMKKVDVVISALAVPQYLD-QFKILEAIKVAGNIKRFLPSDFGVEEDRINALPP- 128
Query: 173 ATFELNIE 180
FE IE
Sbjct: 129 --FEALIE 134
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 113 ERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPG 172
E+ E + + + SA A P+ + + E +KV G +P + G ++ R+N +PP
Sbjct: 71 EKLVELMKKVDVVISALAFPQILDQ-FKILEAIKVAGNIKRFLPSDFGVEEDRINALPP- 128
Query: 173 ATFELNIE 180
FE IE
Sbjct: 129 --FEALIE 134
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 113 ERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPG 172
E+ E + + + SA A P+ + + E +KV G +P + G ++ R+N +PP
Sbjct: 71 EKLVELMKKVDVVISALAFPQILD-QFKILEAIKVAGNIKRFLPSDFGVEEDRINALPP- 128
Query: 173 ATFELNIE 180
FE IE
Sbjct: 129 --FEALIE 134
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 113 ERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPG 172
E+ E + + + SA A P+ + + E +KV G +P + G ++ R+N +PP
Sbjct: 67 EKLVELMKKVDVVISALAFPQILDQ-FKILEAIKVAGNIKRFLPSDFGVEEDRINALPP- 124
Query: 173 ATFELNIE 180
FE IE
Sbjct: 125 --FEALIE 130
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 40/136 (29%)
Query: 72 DYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDN-QNGLFSAQA 130
++ + GL + D V G GP A KG + K +V +NG +
Sbjct: 6 EFSVSPSGLAFCDKVVGYGPEAVKGQLI---------------KAHYVGKLENGKVFDSS 50
Query: 131 APKPPPAMYSVTEG------------------MKVGGKRTVIVPPEAGYDKKRMN----- 167
+ P + + G M GGKRT+ +PPE Y +
Sbjct: 51 YNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGS 110
Query: 168 -EIPPGATFELNIELL 182
IPP + +IE +
Sbjct: 111 CLIPPASVLLFDIEYI 126
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 145 MKVGGKRTVIVPPEAGYDKKRM-NEIPPGATFELNIELLQVK 185
M VG + ++ P+ Y + IPP AT ++ELL+V+
Sbjct: 67 MSVGQRAKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 61 ERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVD 120
E +++A+ LED + G Y D++E K ++ + VGG P KE K V+
Sbjct: 317 EVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHH-NVGGLP-KEMKMGLVE 374
Query: 121 NQNGLF 126
LF
Sbjct: 375 PLKELF 380
>pdb|2L47|A Chain A, Solution Structure Of The Plyg Catalytic Domain
Length = 165
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 20 HTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDG 79
H + K+A+ IP+ R A A C + N+++I +E ++ S G
Sbjct: 54 HIAVDDKKAIQGIPLERNAWA---------------CGDGNGSGNRQSISVEICYSKSGG 98
Query: 80 LKYY 83
+YY
Sbjct: 99 DRYY 102
>pdb|3OI8|A Chain A, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
pdb|3OI8|B Chain B, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
Length = 156
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 56 CSEARERRNKKAIPLEDYHTTSDGLKYYDIVE 87
E RE+RN AI +++Y TS + + DI+E
Sbjct: 125 LKEFREQRNHXAIVIDEYGGTSGLVTFEDIIE 156
>pdb|1WMR|A Chain A, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1WMR|B Chain B, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1X0C|A Chain A, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|1X0C|B Chain B, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|2Z8G|A Chain A, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
pdb|2Z8G|B Chain B, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
Length = 549
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 70 LED--YHTTSDGLK-YYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLF 126
L+D YHT DGLK YY V + V K S EF G P + + DN + +
Sbjct: 348 LQDVFYHTDDDGLKMYYSNVTARNIVMWKESVAPVVEF--GWTP-RNTENVLFDNVDVIH 404
Query: 127 SAQAAPKPPPAMY 139
A A P ++
Sbjct: 405 QAYANAGNNPGIF 417
>pdb|2DU7|A Chain A, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|B Chain B, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|C Chain C, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|D Chain D, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
Length = 549
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 18 PQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTS 77
P+ TT+ + + S ++ I LP + S+ +C +R ++ L YH+ S
Sbjct: 188 PESTTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSH--LMSYHSAS 245
Query: 78 DGLKYYDIVEGKGPVAQKGSTVQ 100
+ D+ G V +G Q
Sbjct: 246 CVVVGEDVSVDDGKVVAEGLLAQ 268
>pdb|1YB0|A Chain A, Structure Of Plyl
pdb|1YB0|B Chain B, Structure Of Plyl
pdb|1YB0|C Chain C, Structure Of Plyl
Length = 159
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 20 HTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDG 79
H + KQA+ IP R A A C + N+++I +E ++ S G
Sbjct: 54 HVAVDDKQAIQGIPWERNAWA---------------CGDGNGPGNRESISVEICYSKSGG 98
Query: 80 LKYY 83
+YY
Sbjct: 99 DRYY 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,031,486
Number of Sequences: 62578
Number of extensions: 247494
Number of successful extensions: 428
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 43
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)