Query 029614
Match_columns 190
No_of_seqs 185 out of 1266
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 15:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 2.5E-30 5.4E-35 208.2 14.3 115 67-185 90-205 (205)
2 KOG0552 FKBP-type peptidyl-pro 100.0 2.3E-28 5.1E-33 200.6 11.9 109 74-185 116-226 (226)
3 PRK11570 peptidyl-prolyl cis-t 99.9 1E-25 2.2E-30 184.3 12.3 114 68-185 92-206 (206)
4 TIGR03516 ppisom_GldI peptidyl 99.9 3.4E-25 7.3E-30 177.4 14.7 113 70-186 61-177 (177)
5 KOG0544 FKBP-type peptidyl-pro 99.9 9.7E-25 2.1E-29 155.5 10.5 104 79-185 2-108 (108)
6 PRK10902 FKBP-type peptidyl-pr 99.9 2.3E-24 5E-29 182.5 13.4 118 68-189 136-253 (269)
7 KOG0549 FKBP-type peptidyl-pro 99.9 2.4E-24 5.1E-29 170.6 11.2 108 78-188 68-179 (188)
8 PF00254 FKBP_C: FKBP-type pep 99.8 4.9E-19 1.1E-23 126.8 7.8 88 92-182 4-94 (94)
9 KOG0543 FKBP-type peptidyl-pro 99.6 2.7E-14 5.8E-19 125.5 11.8 105 77-188 83-194 (397)
10 PRK15095 FKBP-type peptidyl-pr 99.5 1.5E-14 3.3E-19 113.7 7.3 72 92-166 4-76 (156)
11 PRK10737 FKBP-type peptidyl-pr 99.4 5.7E-13 1.2E-17 108.2 7.1 71 92-166 2-73 (196)
12 COG1047 SlpA FKBP-type peptidy 99.4 2E-12 4.2E-17 102.8 7.4 72 92-166 2-74 (174)
13 KOG0543 FKBP-type peptidyl-pro 98.6 5E-08 1.1E-12 86.2 5.8 80 86-183 1-83 (397)
14 TIGR00115 tig trigger factor. 98.2 7.7E-06 1.7E-10 73.1 10.0 86 92-187 146-232 (408)
15 PRK01490 tig trigger factor; P 98.0 5E-05 1.1E-09 68.4 10.0 85 92-186 157-242 (435)
16 KOG0549 FKBP-type peptidyl-pro 97.5 9E-05 1.9E-09 59.4 3.5 49 133-184 7-55 (188)
17 COG0544 Tig FKBP-type peptidyl 97.2 0.0015 3.2E-08 59.4 7.7 83 93-187 158-243 (441)
18 KOG0545 Aryl-hydrocarbon recep 90.0 0.12 2.6E-06 44.0 0.8 77 77-155 9-89 (329)
19 PF05984 Cytomega_UL20A: Cytom 66.7 10 0.00023 26.8 3.7 14 34-47 1-14 (100)
20 PLN00044 multi-copper oxidase- 50.9 44 0.00094 31.9 6.2 35 74-109 38-79 (596)
21 PF08255 Leader_Trp: Trp-opero 50.8 5.8 0.00013 18.6 0.2 11 1-11 1-11 (14)
22 TIGR01480 copper_res_A copper- 49.2 23 0.00051 33.6 4.1 28 77-105 59-91 (587)
23 PF01346 FKBP_N: Domain amino 46.5 17 0.00036 26.7 2.2 17 68-84 108-124 (124)
24 PF13627 LPAM_2: Prokaryotic l 43.9 23 0.00051 19.0 1.9 17 39-55 3-19 (24)
25 PLN00042 photosystem II oxygen 38.7 82 0.0018 26.9 5.4 24 34-57 50-74 (260)
26 PF01272 GreA_GreB: Transcript 36.8 95 0.0021 20.8 4.6 23 136-158 44-66 (77)
27 CHL00084 rpl19 ribosomal prote 30.9 47 0.001 24.9 2.5 70 91-183 21-91 (117)
28 PF08139 LPAM_1: Prokaryotic m 30.8 55 0.0012 17.8 2.1 20 34-53 6-25 (25)
29 PF10379 nec1: Virulence prote 28.6 49 0.0011 25.6 2.2 24 28-51 20-43 (184)
30 PLN02354 copper ion binding / 28.6 2.1E+02 0.0046 26.9 6.9 34 74-108 38-76 (552)
31 PF13473 Cupredoxin_1: Cupredo 28.3 38 0.00083 23.9 1.6 15 143-157 68-82 (104)
32 PRK05892 nucleoside diphosphat 27.6 1.4E+02 0.003 23.3 4.7 22 137-158 124-145 (158)
33 PF10518 TAT_signal: TAT (twin 26.2 75 0.0016 17.1 2.1 7 34-40 2-8 (26)
34 COG5567 Predicted small peripl 24.8 79 0.0017 20.6 2.3 18 39-56 8-25 (58)
35 PRK09810 entericidin A; Provis 24.6 69 0.0015 19.5 2.0 20 34-53 2-21 (41)
36 PRK05338 rplS 50S ribosomal pr 22.6 97 0.0021 23.2 2.9 70 91-183 17-87 (116)
37 TIGR01462 greA transcription e 20.1 2.2E+02 0.0048 21.7 4.6 23 136-158 119-141 (151)
38 TIGR01461 greB transcription e 20.0 2.1E+02 0.0046 22.2 4.5 22 137-158 122-143 (156)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-30 Score=208.22 Aligned_cols=115 Identities=30% Similarity=0.446 Sum_probs=104.0
Q ss_pred CCCCCCceeCCCCeEEEEEecCCCcccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecCCCCCccHHHHhccCc
Q 029614 67 AIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMK 146 (190)
Q Consensus 67 ~~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~~~~i~Gl~eal~gMk 146 (190)
+.+.....++++||+|++++.|+|+.|+.+|+|+ +||+..+.||++||+||.+.. ++.|..+ ++|+||++||++|+
T Consensus 90 ~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~-vhY~G~l~~G~vFDsS~~rg~--p~~f~l~-~vI~Gw~egl~~M~ 165 (205)
T COG0545 90 NAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVT-VHYTGTLIDGTVFDSSYDRGQ--PAEFPLG-GVIPGWDEGLQGMK 165 (205)
T ss_pred hcccCCceECCCCcEEEEEeccCCCCCCCCCEEE-EEEEEecCCCCccccccccCC--CceeecC-CeeehHHHHHhhCC
Confidence 3455678899999999999999999999999999 999999999999999997754 4555555 78999999999999
Q ss_pred cccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEeec
Q 029614 147 VGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQVK 185 (190)
Q Consensus 147 ~G~k~~v~IPp~layG~~g~~-~IPp~atLvf~VeLl~v~ 185 (190)
+|++|+++|||++|||.+|.+ .||||++|+|||||++|.
T Consensus 166 vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 166 VGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred CCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 999999999999999999965 599999999999999974
No 2
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-28 Score=200.58 Aligned_cols=109 Identities=40% Similarity=0.590 Sum_probs=98.3
Q ss_pred eeCCCCeEEEEEecCCCcccCCCCceEEEEEEEECC-CCCEeeceeecCCCCceeeec-CCCCCccHHHHhccCccccEE
Q 029614 74 HTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGP-PGKERKREFVDNQNGLFSAQA-APKPPPAMYSVTEGMKVGGKR 151 (190)
Q Consensus 74 ~~~~sGl~y~~l~~G~G~~~~~Gd~V~~~~y~~~~~-dG~~~~ss~~~~~~~~~~~~~-~~~~i~Gl~eal~gMk~G~k~ 151 (190)
.++++||+|++++.|+|+.+..|+.|. ++|..+.. +|++|++++....... |.. ..++|+||+.+|.+|++||+|
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~-v~Y~Gkl~~~GkvFd~~~~~kp~~~--f~lg~g~VIkG~d~gv~GMkvGGkR 192 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVS-VRYIGKLKGNGKVFDSNFGGKPFKL--FRLGSGEVIKGWDVGVEGMKVGGKR 192 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEE-EEEEEEecCCCeEeecccCCCCccc--cccCCCCCCchHHHhhhhhccCCee
Confidence 578999999999999999999999999 99999886 9999999986533332 443 457899999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeec
Q 029614 152 TVIVPPEAGYDKKRMNEIPPGATFELNIELLQVK 185 (190)
Q Consensus 152 ~v~IPp~layG~~g~~~IPp~atLvf~VeLl~v~ 185 (190)
+|+|||++|||.++.+.||||+||+|||||+.|.
T Consensus 193 rviIPp~lgYg~~g~~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 193 RVIIPPELGYGKKGVPEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred EEEeCccccccccCcCcCCCCCcEEEEEEEEecC
Confidence 9999999999999999999999999999999874
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.93 E-value=1e-25 Score=184.28 Aligned_cols=114 Identities=20% Similarity=0.326 Sum_probs=102.3
Q ss_pred CCCCCceeCCCCeEEEEEecCCCcccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecCCCCCccHHHHhccCcc
Q 029614 68 IPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKV 147 (190)
Q Consensus 68 ~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~~~~i~Gl~eal~gMk~ 147 (190)
.+.+++.++++|++|+++++|+|+.|+.||.|. +||++.+.||++|+++|.+..+ +.|..+ .+|+||+++|.+|++
T Consensus 92 ~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~-v~Y~g~l~dG~vfdss~~~g~P--~~f~l~-~vipG~~eaL~~M~~ 167 (206)
T PRK11570 92 AKKEGVNSTESGLQFRVLTQGEGAIPARTDRVR-VHYTGKLIDGTVFDSSVARGEP--AEFPVN-GVIPGWIEALTLMPV 167 (206)
T ss_pred hhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEE-EEEEEEECCCCEEEeccCCCCC--eEEEee-chhhHHHHHHcCCCC
Confidence 456788999999999999999999999999999 9999999999999999865444 344443 579999999999999
Q ss_pred ccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEeec
Q 029614 148 GGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQVK 185 (190)
Q Consensus 148 G~k~~v~IPp~layG~~g~~-~IPp~atLvf~VeLl~v~ 185 (190)
|++++++|||++|||++|.+ .||||++|+|+|||++|.
T Consensus 168 G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 168 GSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred CCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 99999999999999999986 799999999999999983
No 4
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.93 E-value=3.4e-25 Score=177.37 Aligned_cols=113 Identities=22% Similarity=0.328 Sum_probs=99.3
Q ss_pred CCCceeCCCCeEEEEEec--CCCcccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCc
Q 029614 70 LEDYHTTSDGLKYYDIVE--GKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMK 146 (190)
Q Consensus 70 ~~~~~~~~sGl~y~~l~~--G~G~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk 146 (190)
...|.++++|++|.++++ |+|..|+.||.|. +||++...||+++++++.. +++.|..+ ...++||+++|.+|+
T Consensus 61 ~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~-v~Y~~~~~dG~v~~ss~~~---~P~~f~vg~~~vi~Gl~e~L~~Mk 136 (177)
T TIGR03516 61 IVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVT-FEYDIRALDGDVIYSEEEL---GPQTYKVDQQDLFSGLRDGLKLMK 136 (177)
T ss_pred CCCceECCCccEEEEEEecCCCCCcCCCCCEEE-EEEEEEeCCCCEEEeCCCC---CCEEEEeCCcchhHHHHHHHcCCC
Confidence 456789999999999876 7778899999999 9999999999999988743 35556554 356999999999999
Q ss_pred cccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEeecC
Q 029614 147 VGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQVKP 186 (190)
Q Consensus 147 ~G~k~~v~IPp~layG~~g~~-~IPp~atLvf~VeLl~v~~ 186 (190)
+|++++++|||++|||.+|.+ .||||++|+|+|||++|.+
T Consensus 137 ~Ge~~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 137 EGETATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred CCCEEEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEecC
Confidence 999999999999999999875 7999999999999999863
No 5
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.7e-25 Score=155.55 Aligned_cols=104 Identities=25% Similarity=0.346 Sum_probs=94.8
Q ss_pred CeEEEEEecCCCcc-cCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEEEEec
Q 029614 79 GLKYYDIVEGKGPV-AQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRTVIVP 156 (190)
Q Consensus 79 Gl~y~~l~~G~G~~-~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~v~IP 156 (190)
|+...+++.|+|.. |+.||+|. +||+....||+.|+|+-.+ +.+|.|..+ .++|.||++++.+|.+|++.++.|+
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt-~hYtg~L~dG~kfDSs~dr--~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~ 78 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVT-VHYTGTLQDGKKFDSSRDR--GKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTIS 78 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEE-EEEEeEecCCcEeeccccc--CCCeeEEecCcceeechhhcchhccccccceeeec
Confidence 67889999999955 99999999 9999999999999998754 478898875 6779999999999999999999999
Q ss_pred CCCCCCCCCCC-CCCCCCeEEEEEEEEeec
Q 029614 157 PEAGYDKKRMN-EIPPGATFELNIELLQVK 185 (190)
Q Consensus 157 p~layG~~g~~-~IPp~atLvf~VeLl~v~ 185 (190)
|++|||.+|.+ .||||++|+|||||++|.
T Consensus 79 pd~aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 79 PDYAYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred cccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 99999999986 799999999999999874
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=2.3e-24 Score=182.52 Aligned_cols=118 Identities=30% Similarity=0.419 Sum_probs=105.8
Q ss_pred CCCCCceeCCCCeEEEEEecCCCcccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecCCCCCccHHHHhccCcc
Q 029614 68 IPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKV 147 (190)
Q Consensus 68 ~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~~~~i~Gl~eal~gMk~ 147 (190)
.+.+++.++++|++|+++++|+|..|+.||.|. +||++...||++|+++|.+.. ++.+..+ ..|+||+++|.+|++
T Consensus 136 ~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~-V~Y~g~l~dG~vfdss~~~g~--p~~f~l~-~vipG~~EaL~~Mk~ 211 (269)
T PRK10902 136 AKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVV-VNYKGTLIDGKEFDNSYTRGE--PLSFRLD-GVIPGWTEGLKNIKK 211 (269)
T ss_pred ccCCCcEECCCccEEEEEeCCCCCCCCCCCEEE-EEEEEEeCCCCEeeccccCCC--ceEEecC-CcchHHHHHHhcCCC
Confidence 566788999999999999999999999999999 999999899999999886543 3444443 579999999999999
Q ss_pred ccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeecCCCC
Q 029614 148 GGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEG 189 (190)
Q Consensus 148 G~k~~v~IPp~layG~~g~~~IPp~atLvf~VeLl~v~~~~~ 189 (190)
|++++++||++++||.+|.+.||||++|+|+|||++|++.++
T Consensus 212 Gek~~l~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 212 GGKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred CcEEEEEECchhhCCCCCCCCCCCCCcEEEEEEEEEeccCcc
Confidence 999999999999999999888999999999999999987654
No 7
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.4e-24 Score=170.59 Aligned_cols=108 Identities=22% Similarity=0.328 Sum_probs=92.7
Q ss_pred CCeEEEEEec--CCCcccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEEEE
Q 029614 78 DGLKYYDIVE--GKGPVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRTVI 154 (190)
Q Consensus 78 sGl~y~~l~~--G~G~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~v~ 154 (190)
++++..+++. ....+.+.||++. +||++...||++|+|||.+ +.+|.|..+ .++|+|||++|.+|++||||+++
T Consensus 68 ~~l~I~v~~~p~~C~~kak~GD~l~-~HY~g~leDGt~fdSS~~r--g~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~ 144 (188)
T KOG0549|consen 68 EELQIGVLKKPEECPEKAKKGDTLH-VHYTGSLEDGTKFDSSYSR--GAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLI 144 (188)
T ss_pred CceeEEEEECCccccccccCCCEEE-EEEEEEecCCCEEeeeccC--CCCEEEEeCCCceeccHhHHhhhhCcccceEEe
Confidence 3455555443 3567799999999 9999999999999999966 467888765 46799999999999999999999
Q ss_pred ecCCCCCCCCCCC-CCCCCCeEEEEEEEEeecCCC
Q 029614 155 VPPEAGYDKKRMN-EIPPGATFELNIELLQVKPPE 188 (190)
Q Consensus 155 IPp~layG~~g~~-~IPp~atLvf~VeLl~v~~~~ 188 (190)
|||+||||++|.+ .||++++|+|||||+++.+.+
T Consensus 145 IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 145 IPPHLGYGERGAPPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred cCccccCccCCCCCCCCCCeeEEEEEEEEEeecCC
Confidence 9999999999976 599999999999999998753
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.78 E-value=4.9e-19 Score=126.84 Aligned_cols=88 Identities=32% Similarity=0.510 Sum_probs=77.5
Q ss_pred ccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEEEEecCCCCCCCCCCC--C
Q 029614 92 VAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN--E 168 (190)
Q Consensus 92 ~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~v~IPp~layG~~g~~--~ 168 (190)
.|+.||.|. +||+++..||+++++++. ...++.|..+ ...++||+++|.+|++|++++++||++++||+++.. .
T Consensus 4 ~~~~gd~V~-i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 4 TPKEGDTVT-IHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SBSTTSEEE-EEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred cCCCCCEEE-EEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 399999999 999999889999988864 3456677664 357999999999999999999999999999999874 5
Q ss_pred CCCCCeEEEEEEEE
Q 029614 169 IPPGATFELNIELL 182 (190)
Q Consensus 169 IPp~atLvf~VeLl 182 (190)
||++++|+|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999996
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.7e-14 Score=125.48 Aligned_cols=105 Identities=24% Similarity=0.284 Sum_probs=87.7
Q ss_pred CCCeEEEEEecCCC--cccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecCC--CCCccHHHHhccCccccEEE
Q 029614 77 SDGLKYYDIVEGKG--PVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAP--KPPPAMYSVTEGMKVGGKRT 152 (190)
Q Consensus 77 ~sGl~y~~l~~G~G--~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~~--~~i~Gl~eal~gMk~G~k~~ 152 (190)
+.+|..+++++|.| ..|.+|.+|. +||.....|+ +|+..- .. |.+..+. .+|.||+.+|..|++|+.+.
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~-v~~~G~~~~~-~f~~~~----~~-fe~~~Ge~~~vi~Gle~al~~M~~GE~a~ 155 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVK-VHLEGELEDG-VFDQRE----LR-FEFGEGEDIDVIEGLEIALRMMKVGEVAL 155 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEE-EEEEEEECCc-ceeccc----cc-eEEecCCccchhHHHHHHHHhcCccceEE
Confidence 78899999999999 5599999999 9999988777 443322 22 6666554 57999999999999999999
Q ss_pred EEecCCCCCCCCCC--CCCCCCCeEEEEEEEEeec-CCC
Q 029614 153 VIVPPEAGYDKKRM--NEIPPGATFELNIELLQVK-PPE 188 (190)
Q Consensus 153 v~IPp~layG~~g~--~~IPp~atLvf~VeLl~v~-~~~ 188 (190)
|+|+|.++||+.+. +.||||++|.|+|||+++. +..
T Consensus 156 v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~ 194 (397)
T KOG0543|consen 156 VTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKED 194 (397)
T ss_pred EEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcc
Confidence 99999999996554 3799999999999999998 443
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.54 E-value=1.5e-14 Score=113.71 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=61.3
Q ss_pred ccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEEEEecCCCCCCCCCC
Q 029614 92 VAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRM 166 (190)
Q Consensus 92 ~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~v~IPp~layG~~g~ 166 (190)
.++.|+.|. +||+++..||+++++++.. ..++.|..+ ...++||+++|.+|++|+++.+.|||++|||++..
T Consensus 4 ~i~~~~~V~-v~Y~~~~~dG~v~dst~~~--~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~ 76 (156)
T PRK15095 4 SVQSNSAVL-VHFTLKLDDGSTAESTRNN--GKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP 76 (156)
T ss_pred ccCCCCEEE-EEEEEEeCCCCEEEECCCC--CCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 578899999 9999999999999998753 245566554 35699999999999999999999999999997653
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.40 E-value=5.7e-13 Score=108.20 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=60.4
Q ss_pred ccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEEEEecCCCCCCCCCC
Q 029614 92 VAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRM 166 (190)
Q Consensus 92 ~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~v~IPp~layG~~g~ 166 (190)
++++++.|+ ++|++++.||+++++++.. .++.|..+ ...+|||+++|.+|++|+++.|.|||+.|||++..
T Consensus 2 kI~~~~vV~-l~Y~l~~~dG~v~dst~~~---~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~ 73 (196)
T PRK10737 2 KVAKDLVVS-LAYQVRTEDGVLVDESPVS---APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE 73 (196)
T ss_pred ccCCCCEEE-EEEEEEeCCCCEEEecCCC---CCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 367889999 9999999999999988742 45666654 46699999999999999999999999999997654
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2e-12 Score=102.76 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=60.4
Q ss_pred ccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEEEEecCCCCCCCCCC
Q 029614 92 VAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRM 166 (190)
Q Consensus 92 ~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~v~IPp~layG~~g~ 166 (190)
.+++||.|. ++|+++..||+++++|... .+++.+..+ ...++||+++|.+|.+|++..|.|||+.|||++..
T Consensus 2 ~i~k~~~V~-i~Y~~~~~dg~v~Dtt~e~--~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~ 74 (174)
T COG1047 2 KIEKGDVVS-LHYTLKVEDGEVVDTTDEN--YGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP 74 (174)
T ss_pred cccCCCEEE-EEEEEEecCCcEEEccccc--CCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh
Confidence 367899999 9999999999999988652 245555554 45699999999999999999999999999997653
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5e-08 Score=86.23 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=68.3
Q ss_pred ecCCCcc-cCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEEEEecCCCCCCC
Q 029614 86 VEGKGPV-AQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDK 163 (190)
Q Consensus 86 ~~G~G~~-~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~v~IPp~layG~ 163 (190)
++|+|.. |..||.|. +||+....||+.|++|-. ..+|.|..+ ..+|.||+.++..|+. |+
T Consensus 1 ~eg~g~~~p~~g~~v~-~hytg~l~dgt~fdss~d---~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~ 62 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVE-VHYTGTLLDGTKFDSSRD---GDPFKFDLGKGSVIKGWDLGVATMKK--------------GE 62 (397)
T ss_pred CCCCCccCCCCCceeE-EEEeEEecCCeecccccC---CCceeeecCCCccccccccccccccc--------------cc
Confidence 4788976 99999999 999999999999998874 467777765 5679999999999998 66
Q ss_pred CCCC-CCCCCCeEEEEEEEEe
Q 029614 164 KRMN-EIPPGATFELNIELLQ 183 (190)
Q Consensus 164 ~g~~-~IPp~atLvf~VeLl~ 183 (190)
.+.+ .||++++|.|+|+|++
T Consensus 63 ~~~pp~ip~~a~l~fe~el~D 83 (397)
T KOG0543|consen 63 AGSPPKIPSNATLLFEVELLD 83 (397)
T ss_pred cCCCCCCCCCcceeeeecccC
Confidence 6665 6999999999999854
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.24 E-value=7.7e-06 Score=73.06 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=67.2
Q ss_pred ccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEEEEecCCCCCCCCCCCCCC
Q 029614 92 VAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIP 170 (190)
Q Consensus 92 ~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~v~IPp~layG~~g~~~IP 170 (190)
.++.||.|. ++|++.. ||+.++++. ...+.+..+ ...++||+++|.||++|+++.+.+|....|+....
T Consensus 146 ~~~~gD~V~-v~~~~~~-dg~~~~~~~----~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~---- 215 (408)
T TIGR00115 146 AAEKGDRVT-IDFEGFI-DGEAFEGGK----AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL---- 215 (408)
T ss_pred ccCCCCEEE-EEEEEEE-CCEECcCCC----CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----
Confidence 578899999 9999864 787765432 223444443 45699999999999999999999998778876543
Q ss_pred CCCeEEEEEEEEeecCC
Q 029614 171 PGATFELNIELLQVKPP 187 (190)
Q Consensus 171 p~atLvf~VeLl~v~~~ 187 (190)
++.+..|.|+|.+|+..
T Consensus 216 ~gk~~~f~v~i~~I~~~ 232 (408)
T TIGR00115 216 AGKEATFKVTVKEVKEK 232 (408)
T ss_pred CCCeEEEEEEEEEeccC
Confidence 58899999999999643
No 15
>PRK01490 tig trigger factor; Provisional
Probab=97.98 E-value=5e-05 Score=68.45 Aligned_cols=85 Identities=22% Similarity=0.283 Sum_probs=65.1
Q ss_pred ccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEEEEecCCCCCCCCCCCCCC
Q 029614 92 VAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIP 170 (190)
Q Consensus 92 ~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~v~IPp~layG~~g~~~IP 170 (190)
.++.||.|. ++|.... ||+.++.+. ...+.+..+ ...++||+++|.||++|+++.+.++....|+....
T Consensus 157 ~~~~gD~V~-vd~~~~~-~g~~~~~~~----~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l---- 226 (435)
T PRK01490 157 PAENGDRVT-IDFVGSI-DGEEFEGGK----AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL---- 226 (435)
T ss_pred cCCCCCEEE-EEEEEEE-CCEECcCCC----CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----
Confidence 478999999 9999875 777765432 123444443 35699999999999999999998887777765432
Q ss_pred CCCeEEEEEEEEeecC
Q 029614 171 PGATFELNIELLQVKP 186 (190)
Q Consensus 171 p~atLvf~VeLl~v~~ 186 (190)
++.+..|.|+|.+|+.
T Consensus 227 agk~~~f~v~v~~V~~ 242 (435)
T PRK01490 227 AGKEATFKVTVKEVKE 242 (435)
T ss_pred CCCeEEEEEEEEEecc
Confidence 5788999999999974
No 16
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=9e-05 Score=59.42 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=38.0
Q ss_pred CCCccHHHHhccCccccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 029614 133 KPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQV 184 (190)
Q Consensus 133 ~~i~Gl~eal~gMk~G~k~~v~IPp~layG~~g~~~IPp~atLvf~VeLl~v 184 (190)
.+|+|+++++.+|+.|++|++++||+++||..+.. .-..++|.+.++.+
T Consensus 7 ~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---~~~~~~~~~~l~~~ 55 (188)
T KOG0549|consen 7 FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---DLNILVITILLVLL 55 (188)
T ss_pred EEecCHHHHhhhhhccccceeccCCcccccccccc---cccceEEEeeeeeh
Confidence 45899999999999999999999999999955432 22245666665553
No 17
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0015 Score=59.44 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=58.5
Q ss_pred cCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecC-CCCCccHHHHhccCccccEEE--EEecCCCCCCCCCCCCC
Q 029614 93 AQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAA-PKPPPAMYSVTEGMKVGGKRT--VIVPPEAGYDKKRMNEI 169 (190)
Q Consensus 93 ~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~-~~~i~Gl~eal~gMk~G~k~~--v~IPp~layG~~g~~~I 169 (190)
++.||.|. +.|.+. -||..|...- ..-|.+..+ ...||||+++|.||++|++.. +..|.++.-++-
T Consensus 158 a~~gD~v~-IDf~g~-iDg~~fegg~----ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L----- 226 (441)
T COG0544 158 AENGDRVT-IDFEGS-VDGEEFEGGK----AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL----- 226 (441)
T ss_pred cccCCEEE-EEEEEE-EcCeeccCcc----ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----
Confidence 99999999 999874 4666653322 223555544 356999999999999999977 455665433321
Q ss_pred CCCCeEEEEEEEEeecCC
Q 029614 170 PPGATFELNIELLQVKPP 187 (190)
Q Consensus 170 Pp~atLvf~VeLl~v~~~ 187 (190)
.+.+..|.|+|..|...
T Consensus 227 -aGK~a~F~V~vkeVk~~ 243 (441)
T COG0544 227 -AGKEATFKVKVKEVKKR 243 (441)
T ss_pred -CCCceEEEEEEEEEeec
Confidence 45677899999998643
No 18
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=0.12 Score=43.99 Aligned_cols=77 Identities=12% Similarity=0.034 Sum_probs=54.0
Q ss_pred CCCeEEEEEecCCCccc--CCCCceEEEEEEEECC--CCCEeeceeecCCCCceeeecCCCCCccHHHHhccCccccEEE
Q 029614 77 SDGLKYYDIVEGKGPVA--QKGSTVQPYEFKVGGP--PGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRT 152 (190)
Q Consensus 77 ~sGl~y~~l~~G~G~~~--~~Gd~V~~~~y~~~~~--dG~~~~ss~~~~~~~~~~~~~~~~~i~Gl~eal~gMk~G~k~~ 152 (190)
..|++.+++..|+|+-| .+|..|. |||.-... .++++|+|-..+.+--+.+ +.-...+-|+..|..|++++-..
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~-FHfrtl~~~e~~tviDDsRk~gkPmeiii-GkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVI-FHFRTLKCDEERTVIDDSRKVGKPMEIII-GKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEE-EEEEecccCcccccccchhhcCCCeEEee-ccccccHHHHHHHHHHhhhhHHH
Confidence 47899999999999875 5798999 99987654 3456665543322222221 12234789999999999999877
Q ss_pred EEe
Q 029614 153 VIV 155 (190)
Q Consensus 153 v~I 155 (190)
+.+
T Consensus 87 F~~ 89 (329)
T KOG0545|consen 87 FWC 89 (329)
T ss_pred hhh
Confidence 554
No 19
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=66.71 E-value=10 Score=26.83 Aligned_cols=14 Identities=14% Similarity=0.282 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHhh
Q 029614 34 ISRRAAAILISSLP 47 (190)
Q Consensus 34 ~~RR~~~~~~~~la 47 (190)
|.||.+++.+.++.
T Consensus 1 MaRRlwiLslLAVt 14 (100)
T PF05984_consen 1 MARRLWILSLLAVT 14 (100)
T ss_pred CchhhHHHHHHHHH
Confidence 67898665443333
No 20
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=50.94 E-value=44 Score=31.88 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=21.3
Q ss_pred eeCCCC--eE-EEEEecCC--Ccc--cCCCCceEEEEEEEECC
Q 029614 74 HTTSDG--LK-YYDIVEGK--GPV--AQKGSTVQPYEFKVGGP 109 (190)
Q Consensus 74 ~~~~sG--l~-y~~l~~G~--G~~--~~~Gd~V~~~~y~~~~~ 109 (190)
..+++| .+ ...+..|. |+. +..||.|. ++..=...
T Consensus 38 ~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~-V~V~N~L~ 79 (596)
T PLN00044 38 SAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLV-VNVRNALD 79 (596)
T ss_pred EEccCCCceeeEEEEEcCcCCCCcEEEECCCEEE-EEEEeCCC
Confidence 456677 33 33445664 665 67899988 77654433
No 21
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=50.80 E-value=5.8 Score=18.58 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=9.1
Q ss_pred Ccccccccccc
Q 029614 1 MASIRSFGKWT 11 (190)
Q Consensus 1 ~~~~~~~~~~~ 11 (190)
|.++-|||+|=
T Consensus 1 m~a~~~L~~WW 11 (14)
T PF08255_consen 1 MKATFSLHGWW 11 (14)
T ss_pred CceEEEEeeEE
Confidence 77888999984
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=49.16 E-value=23 Score=33.58 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=15.6
Q ss_pred CCCeEEEEE-ecCC--Ccc--cCCCCceEEEEEE
Q 029614 77 SDGLKYYDI-VEGK--GPV--AQKGSTVQPYEFK 105 (190)
Q Consensus 77 ~sGl~y~~l-~~G~--G~~--~~~Gd~V~~~~y~ 105 (190)
.+|.....+ ..|. |+. ++.||.|. ++++
T Consensus 59 ~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~-v~v~ 91 (587)
T TIGR01480 59 FTGRARPAITVNGSIPGPLLRWREGDTVR-LRVT 91 (587)
T ss_pred cCCeEEEEEEECCccCCceEEEECCCEEE-EEEE
Confidence 344433333 3443 554 67899887 6654
No 23
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=46.51 E-value=17 Score=26.70 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=12.5
Q ss_pred CCCCCceeCCCCeEEEE
Q 029614 68 IPLEDYHTTSDGLKYYD 84 (190)
Q Consensus 68 ~~~~~~~~~~sGl~y~~ 84 (190)
.+.+++++++|||+|++
T Consensus 108 ~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 108 AKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HTSTTEEE-TTS-EEEE
T ss_pred cCCCCCEECCCCCeeeC
Confidence 45579999999999986
No 24
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=43.89 E-value=23 Score=19.04 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=12.2
Q ss_pred HHHHHHHhhhhccCCCC
Q 029614 39 AAILISSLPFSVISLPK 55 (190)
Q Consensus 39 ~~~~~~~la~~~~~~~~ 55 (190)
.++++.++++++|+..+
T Consensus 3 ~~~~~~~~~LsgCG~KG 19 (24)
T PF13627_consen 3 LLLLALALALSGCGQKG 19 (24)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 44566778889998754
No 25
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=38.69 E-value=82 Score=26.89 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=13.9
Q ss_pred hhhHHHHH-HHHHhhhhccCCCCch
Q 029614 34 ISRRAAAI-LISSLPFSVISLPKCS 57 (190)
Q Consensus 34 ~~RR~~~~-~~~~la~~~~~~~~~a 57 (190)
.+||..|+ +++++++++-..|..+
T Consensus 50 ~srr~~l~~~~ga~a~~~~~~pa~a 74 (260)
T PLN00042 50 VSRRAALALLAGAAAAGAKVSPANA 74 (260)
T ss_pred ccHHHHHHHHHHHHHhhcccCchhh
Confidence 68887544 5566666654444433
No 26
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=36.82 E-value=95 Score=20.83 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=17.3
Q ss_pred ccHHHHhccCccccEEEEEecCC
Q 029614 136 PAMYSVTEGMKVGGKRTVIVPPE 158 (190)
Q Consensus 136 ~Gl~eal~gMk~G~k~~v~IPp~ 158 (190)
--|-.||.|.++|+...+.+|..
T Consensus 44 SPLG~ALlG~~~Gd~v~~~~~~g 66 (77)
T PF01272_consen 44 SPLGKALLGKKVGDEVEVELPGG 66 (77)
T ss_dssp SHHHHHHTT-BTT-EEEEEETTB
T ss_pred CHHHHHhcCCCCCCEEEEEeCCc
Confidence 34678999999999999988653
No 27
>CHL00084 rpl19 ribosomal protein L19
Probab=30.92 E-value=47 Score=24.89 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=38.3
Q ss_pred cccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecCCCCCccHHHHhccCccccEEEEEecCCCCCCCCCCC-CC
Q 029614 91 PVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EI 169 (190)
Q Consensus 91 ~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~~~~i~Gl~eal~gMk~G~k~~v~IPp~layG~~g~~-~I 169 (190)
+....||+|. ++|.+..++.+. ... ..|+-.+..+.-.++ .+++--- -+| .|.. .+
T Consensus 21 p~f~~GDtV~-V~~~i~eg~k~R-~q~-----------------F~GvvI~~r~~G~~~--tftvRki-~~g-vGVEr~f 77 (117)
T CHL00084 21 PKIRVGDTVK-VGVLIQEGNKER-VQF-----------------YEGTVIAKKNSGLNT--TITVRKV-FQG-IGVERVF 77 (117)
T ss_pred CccCCCCEEE-EEEEEecCCeeE-ece-----------------EEEEEEEEeCCCCCe--eEEEEEe-ccC-ccEEEEE
Confidence 3478899999 899887654221 111 223333333332333 3333322 233 2222 57
Q ss_pred CCCCeEEEEEEEEe
Q 029614 170 PPGATFELNIELLQ 183 (190)
Q Consensus 170 Pp~atLvf~VeLl~ 183 (190)
|-+++.+=.||++.
T Consensus 78 pl~SP~I~~IeV~r 91 (117)
T CHL00084 78 LLHSPKLASIEVLR 91 (117)
T ss_pred ecCCCccceEEEEE
Confidence 88888888888886
No 28
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=30.76 E-value=55 Score=17.77 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHhhhhccCC
Q 029614 34 ISRRAAAILISSLPFSVISL 53 (190)
Q Consensus 34 ~~RR~~~~~~~~la~~~~~~ 53 (190)
|=+|....++.++.+++|+.
T Consensus 6 mmKkil~~l~a~~~LagCss 25 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 44554444555555888863
No 29
>PF10379 nec1: Virulence protein nec1; InterPro: IPR018836 The Nec1 protein has necrogenic activity on excised potato tuber tissue, and the encoding gene is highly conserved in plant-pathogenic Streptomyces spp. The G+C content of nec1 indicates lateral transfer from an unrelated taxon, but its origins are unclear. Deletion analysis of nec1 demonstrated that the 151-amino-acid C-terminal region of the Nec1 protein is sufficient to confer necrogenic activity. Streptomyces turgidiscabies containing a nec1 deletion was greatly compromised in virulence on Arabidopsis thaliana (Mouse-ear cress), Nicotiana tabacum (Common tobacco), and Raphanus sativus (Radish) seedlings. The wild-type strain, S. turgidiscabies Car8, aggressively colonized and infected the root meristem of radish, whereas the delta-nec1 mutant Car811 did not. Taken together, the data suggest that Nec1 is a secreted virulence protein with a conserved plant cell target that acts early in plant infection [].
Probab=28.61 E-value=49 Score=25.55 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=17.5
Q ss_pred cccccchhhHHHHHHHHHhhhhcc
Q 029614 28 AVVSIPISRRAAAILISSLPFSVI 51 (190)
Q Consensus 28 ~~~~~~~~RR~~~~~~~~la~~~~ 51 (190)
-.-+++|+||.++++++.|+.++.
T Consensus 20 ktqsS~~rRRV~ts~A~~L~As~~ 43 (184)
T PF10379_consen 20 KTQSSCMRRRVATSTATILDASGV 43 (184)
T ss_pred ccccccHHHHHHHHHHHHHhhhhh
Confidence 345788999988777777765544
No 30
>PLN02354 copper ion binding / oxidoreductase
Probab=28.57 E-value=2.1e+02 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=22.1
Q ss_pred eeCCCCeEEEEEe-cCC--Ccc--cCCCCceEEEEEEEEC
Q 029614 74 HTTSDGLKYYDIV-EGK--GPV--AQKGSTVQPYEFKVGG 108 (190)
Q Consensus 74 ~~~~sGl~y~~l~-~G~--G~~--~~~Gd~V~~~~y~~~~ 108 (190)
...++|.....+. .|. |+. +..||.|. ++.+=..
T Consensus 38 ~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~-V~v~N~l 76 (552)
T PLN02354 38 TASPLGVPQQVILINGQFPGPNINSTSNNNIV-INVFNNL 76 (552)
T ss_pred EecCCCeEEEEEEECCCCcCCcEEEeCCCEEE-EEEEECC
Confidence 4566787776654 454 665 57899998 6765443
No 31
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=28.34 E-value=38 Score=23.94 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=8.8
Q ss_pred ccCccccEEEEEecC
Q 029614 143 EGMKVGGKRTVIVPP 157 (190)
Q Consensus 143 ~gMk~G~k~~v~IPp 157 (190)
..+..|+..++.+++
T Consensus 68 ~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 68 KVLPPGETATVTFTP 82 (104)
T ss_dssp EEE-TT-EEEEEEEE
T ss_pred EEECCCCEEEEEEcC
Confidence 457778888877743
No 32
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=27.60 E-value=1.4e+02 Score=23.33 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=18.7
Q ss_pred cHHHHhccCccccEEEEEecCC
Q 029614 137 AMYSVTEGMKVGGKRTVIVPPE 158 (190)
Q Consensus 137 Gl~eal~gMk~G~k~~v~IPp~ 158 (190)
-+-.+|.|-++|+.+.+..|..
T Consensus 124 PlG~ALlGk~vGD~v~v~~p~g 145 (158)
T PRK05892 124 PLGQALAGHQAGDTVTYSTPQG 145 (158)
T ss_pred HHHHHHhCCCCCCEEEEEcCCC
Confidence 4668999999999999977664
No 33
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=26.24 E-value=75 Score=17.12 Aligned_cols=7 Identities=43% Similarity=0.510 Sum_probs=4.7
Q ss_pred hhhHHHH
Q 029614 34 ISRRAAA 40 (190)
Q Consensus 34 ~~RR~~~ 40 (190)
++||..+
T Consensus 2 ~sRR~fL 8 (26)
T PF10518_consen 2 LSRRQFL 8 (26)
T ss_pred CcHHHHH
Confidence 6788843
No 34
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=24.79 E-value=79 Score=20.61 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=11.6
Q ss_pred HHHHHHHhhhhccCCCCc
Q 029614 39 AAILISSLPFSVISLPKC 56 (190)
Q Consensus 39 ~~~~~~~la~~~~~~~~~ 56 (190)
.++++.++++++|+..++
T Consensus 8 ~~ala~l~sLA~CG~KGP 25 (58)
T COG5567 8 LLALATLFSLAGCGLKGP 25 (58)
T ss_pred HHHHHHHHHHHhcccCCC
Confidence 445555568889987443
No 35
>PRK09810 entericidin A; Provisional
Probab=24.57 E-value=69 Score=19.51 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHhhhhccCC
Q 029614 34 ISRRAAAILISSLPFSVISL 53 (190)
Q Consensus 34 ~~RR~~~~~~~~la~~~~~~ 53 (190)
|.|...+++++++.+++|--
T Consensus 2 Mkk~~~l~~~~~~~L~aCNT 21 (41)
T PRK09810 2 MKRLIVLVLLASTLLTGCNT 21 (41)
T ss_pred hHHHHHHHHHHHHHHhhhhh
Confidence 34444444555666778853
No 36
>PRK05338 rplS 50S ribosomal protein L19; Provisional
Probab=22.62 E-value=97 Score=23.15 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=36.5
Q ss_pred cccCCCCceEEEEEEEECCCCCEeeceeecCCCCceeeecCCCCCccHHHHhccCccccEEEEEecCCCCCCCCCCC-CC
Q 029614 91 PVAQKGSTVQPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EI 169 (190)
Q Consensus 91 ~~~~~Gd~V~~~~y~~~~~dG~~~~ss~~~~~~~~~~~~~~~~~i~Gl~eal~gMk~G~k~~v~IPp~layG~~g~~-~I 169 (190)
+....||+|. ++|.+..++-+. ...| .|+-.+.. +.|-...+++=-- .+| .|.. .+
T Consensus 17 p~f~~GD~V~-V~~~i~eg~k~R-~q~f-----------------~GvvI~~~--~~G~~~tftvRki-~~g-vGVEr~f 73 (116)
T PRK05338 17 PEFRPGDTVR-VHVKVVEGNKER-IQAF-----------------EGVVIARR--GRGLNETFTVRKI-SYG-VGVERTF 73 (116)
T ss_pred CCcCCCCEEE-EEEEEccCCceE-eccE-----------------EEEEEEEe--CCCCCceEEEEEc-ccC-ccEEEEe
Confidence 3478899999 899886543221 1111 12222222 2222333333221 222 2222 57
Q ss_pred CCCCeEEEEEEEEe
Q 029614 170 PPGATFELNIELLQ 183 (190)
Q Consensus 170 Pp~atLvf~VeLl~ 183 (190)
|-+++++=.||++.
T Consensus 74 pl~SP~I~~IeV~r 87 (116)
T PRK05338 74 PLHSPRIDSIEVVR 87 (116)
T ss_pred cCCCCcccEEEEEE
Confidence 88888888899886
No 37
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=20.09 E-value=2.2e+02 Score=21.73 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=19.2
Q ss_pred ccHHHHhccCccccEEEEEecCC
Q 029614 136 PAMYSVTEGMKVGGKRTVIVPPE 158 (190)
Q Consensus 136 ~Gl~eal~gMk~G~k~~v~IPp~ 158 (190)
--+-.+|.|.++|+.+.+.+|..
T Consensus 119 SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 119 SPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred CHHHHHHcCCCCCCEEEEEeCCC
Confidence 34678999999999999977764
No 38
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=20.03 E-value=2.1e+02 Score=22.16 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=18.7
Q ss_pred cHHHHhccCccccEEEEEecCC
Q 029614 137 AMYSVTEGMKVGGKRTVIVPPE 158 (190)
Q Consensus 137 Gl~eal~gMk~G~k~~v~IPp~ 158 (190)
-+-.+|.|.++|+.+.+-+|..
T Consensus 122 PlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 122 PLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred HHHHHHcCCCCCCEEEEEcCCC
Confidence 4678999999999999977664
Done!