BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029615
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2W|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2W|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2X|A Chain A, Crystal Structure Of Mouse Vps29
pdb|1Z2X|B Chain B, Crystal Structure Of Mouse Vps29
pdb|3PSN|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSN|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSO|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
pdb|3PSO|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
Length = 192
Score = 259 bits (663), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 117/182 (64%), Positives = 149/182 (81%)
Query: 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIR 61
+LVL LGDLHIPHR LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK + D+HI+R
Sbjct: 11 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 70
Query: 62 GEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFT 121
G++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F
Sbjct: 71 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE 130
Query: 122 AYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK 181
A++HE INPGSATGA++++ ++ PSFVLMDI VV YVY+LI +VKV++I++K
Sbjct: 131 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK 190
Query: 182 KT 183
K+
Sbjct: 191 KS 192
>pdb|1W24|A Chain A, Crystal Structure Of Human Vps29
Length = 182
Score = 259 bits (662), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 117/181 (64%), Positives = 148/181 (81%)
Query: 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIR 61
+LVL LGDLHIPHR LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK + D+HI+R
Sbjct: 1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60
Query: 62 GEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFT 121
G++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F
Sbjct: 61 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE 120
Query: 122 AYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK 181
A++HE INPGSATGA++++ ++ PSFVLMDI VV YVY+LI +VKV++I++K
Sbjct: 121 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK 180
Query: 182 K 182
K
Sbjct: 181 K 181
>pdb|2R17|A Chain A, Functional Architecture Of The Retromer Cargo-Recognition
Complex
pdb|2R17|B Chain B, Functional Architecture Of The Retromer Cargo-Recognition
Complex
Length = 183
Score = 249 bits (635), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 112/175 (64%), Positives = 141/175 (80%)
Query: 8 GDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEE 67
GDLHIPHR LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK + D+HI+RG++DE
Sbjct: 8 GDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDEN 67
Query: 68 TRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEG 127
YPE K +T+GQFK+GL HGHQVIPWGD SLA+LQRQ DVDIL++GHTH+F A++HE
Sbjct: 68 LNYPEQKVVTVGQFKIGLIHGHQVIPWGDXASLALLQRQFDVDILISGHTHKFEAFEHEN 127
Query: 128 GVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 182
INPGSATGA++++ ++ PSFVL DI VV YVY+LI +VKV++I++KK
Sbjct: 128 KFYINPGSATGAYNALETNIIPSFVLXDIQASTVVTYVYQLIGDDVKVERIEYKK 182
>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
pdb|2A22|B Chain B, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
Length = 215
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 127/189 (67%), Gaps = 9/189 (4%)
Query: 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRG 62
LVL +GDL IP+ A +LP+ F+ +L KI +++CTGN+C +E + LK I +++I+ G
Sbjct: 27 LVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCSQEYVEMLKNITKNVYIVSG 86
Query: 63 EYDE-------ETR--YPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILV 113
+ D E+ +PE + IG+FK+GL HG+QV+PW D SL QR+LD DILV
Sbjct: 87 DLDSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILV 146
Query: 114 TGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEV 173
TGHTH+ ++ G + +NPG+ATGAFS++T D PSF+LM + G +VV+YVY+L DG+
Sbjct: 147 TGHTHKLRVFEKNGKLFLNPGTATGAFSALTPDAPPSFMLMALQGNKVVLYVYDLRDGKT 206
Query: 174 KVDKIDFKK 182
V +F K
Sbjct: 207 NVAMSEFSK 215
>pdb|2KKN|A Chain A, Solution Nmr Structure Of Themotoga Maritima Protein
Tm1076: Northeast Structural Genomics Consortium Target
Vt57
Length = 178
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 5 LALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEY 64
L + D H+P R A LP + + L + ++ G+ + L+ + + + G
Sbjct: 26 LLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDLDTVILLEKFSKEFYGVHGNM 83
Query: 65 DE---ETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFT 121
D + P +K L + +G+CHG PW D L + + +++ GHTH+
Sbjct: 84 DYPDVKEHLPFSKVLLVEGVTIGMCHGWGA-PWDLKDRLLKVFNE-KPQVILFGHTHEPE 141
Query: 122 AYKHEGGVVINPGS-ATGAFSSITYD 146
G +NPGS A G+++ + D
Sbjct: 142 DTVKAGVRFLNPGSLAEGSYAVLELD 167
>pdb|3CK2|A Chain A, Crystal Structure Of Conserved Uncharacterized Protein
(Predicted Phosphoesterase Cog0622) From Streptococcus
Pneumoniae Tigr4
Length = 176
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 57 LHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 116
+ +++G D YPE +G K+ HGH + L ++ + I + GH
Sbjct: 54 IRVVKGNXDFYAGYPERLVTELGSTKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGH 113
Query: 117 THQFTAYKHEGGVVINPGSAT 137
H +A+ + +NPGS +
Sbjct: 114 LHVPSAWLEGKILFLNPGSIS 134
>pdb|1SU1|A Chain A, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|B Chain B, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|C Chain C, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|D Chain D, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
Length = 208
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 60 IRGEYDEET-----RYPET---KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDI 111
+RG D E +P T + + + + +L L HGH P ++L L + D+
Sbjct: 94 VRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGP----ENLPALNQN---DV 146
Query: 112 LVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNP-SFVLMDIDGLRVVVYVYELID 170
LV GHTH A + NPGS SI NP S+ ++D D L V+ + I
Sbjct: 147 LVYGHTHLPVAEQRGEIFHFNPGSV-----SIPKGGNPASYGMLDNDVLSVIALNDQSII 201
Query: 171 GEVKVD 176
+V ++
Sbjct: 202 AQVAIN 207
>pdb|3QFM|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFM|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFN|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFN|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFO|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
pdb|3QFO|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
Length = 270
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 78 IGQFKLGLCH-------GHQVIPWGDLDSLAMLQRQLDVDILVTGHTH-QFTAYKHEGGV 129
G +G+ H G ++I G + L DI V GH H Q Y G +
Sbjct: 127 FGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYGHIHQQLLRYGTGGQL 186
Query: 130 VINPGSATGAF---SSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVD 176
++NPGS F + + D+ +++++ D +V + +D +V +
Sbjct: 187 IVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMDFRRVDYDVAAE 236
>pdb|2AHD|A Chain A, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|B Chain B, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|C Chain C, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|D Chain D, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
Length = 165
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 65 DEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYK 124
+EE + ++ I K + HGH L M + D+++ GHTH+ +
Sbjct: 75 NEENIIDDFISVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEE 128
Query: 125 HEGGVVINPGSATGAFSSI 143
+ +VINPG G + I
Sbjct: 129 VDDVLVINPGECCGYLTGI 147
>pdb|1S3L|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3L|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
Length = 190
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 65 DEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYK 124
+EE + ++ I K + HGH L M + D+++ GHTH+ +
Sbjct: 100 NEENIIDDFISVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEE 153
Query: 125 HEGGVVINPGSATGAFSSI 143
+ +VINPG G + I
Sbjct: 154 VDDVLVINPGECCGYLTGI 172
>pdb|3QFK|A Chain A, 2.05 Angstrom Crystal Structure Of Putative
5'-Nucleotidase From Staphylococcus Aureus In Complex
With Alpha-Ketoglutarate
Length = 527
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 108 DVDILVTGHTHQFTAYKHEGGVVINPGS 135
D+DI +TGH H+ A + + VI PG+
Sbjct: 239 DIDIFITGHQHRQIAERFKQTAVIQPGT 266
>pdb|2QR4|A Chain A, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
pdb|2QR4|B Chain B, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
Length = 587
Score = 30.0 bits (66), Expect = 0.86, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 129 VVINPGSATGAFSSITYDVNPSFVL 153
VV N G +GA+SS +YD NP +L
Sbjct: 331 VVENKGKRSGAYSSGSYDTNPYILL 355
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 94 WGDLDSLAMLQRQLDVDILVTGHTHQ 119
W D SL ++Q+Q +D+L+TGH Q
Sbjct: 287 WYDAQSLNLIQQQ--IDVLMTGHAWQ 310
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 105 RQLDVDILVTGHTHQFTAYKHEG---------GVVINPGSATGAF--SSITYDVNPSFVL 153
RQLD + HT +AY+ EG G V+ PG+ +S+ + P VL
Sbjct: 205 RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Query: 154 MDI 156
+DI
Sbjct: 265 VDI 267
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 105 RQLDVDILVTGHTHQFTAYKHEG---------GVVINPGSATGAF--SSITYDVNPSFVL 153
RQLD + HT +AY+ EG G V+ PG+ +S+ + P VL
Sbjct: 205 RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Query: 154 MDI 156
+DI
Sbjct: 265 VDI 267
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 105 RQLDVDILVTGHTHQFTAYKHEG---------GVVINPGSATGAF--SSITYDVNPSFVL 153
RQLD + HT +AY+ EG G V+ PG+ +S+ + P VL
Sbjct: 205 RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Query: 154 MDI 156
+DI
Sbjct: 265 VDI 267
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 145 YDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTSTCHS 188
+DVN + +L D + LR VY+L D E+ + ++ + S+ +
Sbjct: 298 FDVNKANILGD-NFLRSAYIVYDLDDNEISIAQVKYTSASSTSA 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,039,074
Number of Sequences: 62578
Number of extensions: 253036
Number of successful extensions: 424
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 17
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)