BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029616
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PC19|SSU72_DANRE RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Danio rerio GN=ssu72 PE=2 SV=1
Length = 194
Score = 189 bits (481), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 119/156 (76%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GFDV S+GTG HVKLPGP+ +PN+Y+F T Y+QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K+ P+R+Q + FD+V T EE+V+D V+EDLN
Sbjct: 67 DLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V VIN++++DNHEEA +G L +LCQ
Sbjct: 125 SREQESFQPVHVINVDIQDNHEEATLGAFLICELCQ 160
>sp|Q5ZJQ7|SSU72_CHICK RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Gallus gallus GN=SSU72 PE=2 SV=1
Length = 194
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q+ FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDVFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V VIN++++DNHEEA +G L +LCQ
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160
>sp|Q17QI2|SSU72_BOVIN RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Bos taurus GN=SSU72 PE=2 SV=1
Length = 194
Score = 187 bits (474), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q+ FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDLFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V VIN++++DNHEEA +G L +LCQ
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160
>sp|Q9CY97|SSU72_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Mus musculus GN=Ssu72 PE=2 SV=1
Length = 194
Score = 186 bits (473), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/156 (58%), Positives = 117/156 (75%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V V+N++++DNHEEA +G L +LCQ
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160
>sp|Q4KLK9|SSU72_RAT RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1
Length = 194
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q+ FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDLFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V V+N++++DNHEEA +G L +LCQ
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160
>sp|Q9NP77|SSU72_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Homo sapiens GN=SSU72 PE=1 SV=1
Length = 194
Score = 186 bits (472), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD ELY +NGIL ML RN +K P+R+Q+ FD++ T EE+V+D VVEDLN
Sbjct: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDLFDLILTCEERVYDQVVEDLN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V V+N++++DNHEEA +G L +LCQ
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160
>sp|Q6NRQ7|SSU72_XENLA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Xenopus laevis GN=ssu72 PE=2 SV=1
Length = 194
Score = 182 bits (463), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VCSSNQNRSMEAH +L + F+V S+GTG HVKLPGP+ +PNVY+F T Y+QM+
Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRSFNVRSFGTGTHVKLPGPAPDKPNVYDFKTTYEQMYS 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL +KD ELY +NGIL ML RN +K P+R+Q+ FD+V T EE+V+D VVE+LN
Sbjct: 67 DLLKKDKELYTQNGILHMLDRNRRIKPRPERFQN--CKDYFDLVITCEERVYDQVVEELN 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V VIN++++DNHEEA +G L +LCQ
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160
>sp|Q558Z3|SSU72_DICDI RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1
Length = 214
Score = 176 bits (447), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 117/158 (74%), Gaps = 4/158 (2%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMF 62
R AMVC+SNQNRS+EAH+L ++GF ++ S+GT AH KLPGPS+ +PN++ FGTPY++++
Sbjct: 23 RIAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIY 82
Query: 63 DDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL 122
L+ +D ELY RNG+L ML+RNI VK AP++WQ+ F+IV+TF+++V+D V+EDL
Sbjct: 83 TSLKNQDQELYIRNGLLNMLERNISVKLAPEKWQEEQ-QSKFEIVYTFDQRVYDAVIEDL 141
Query: 123 NTRE--QPFMKTVLVINLEVKDNHEEAAIGGRLTFDLC 158
R+ ++ V +INL+VKD HEEA G + ++
Sbjct: 142 LQRDVSSSLLQPVHIINLQVKDTHEEAVGGAQHALEIT 179
>sp|A6NK39|S72L1_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase
SSU72-like protein 1 OS=Homo sapiens PE=3 SV=1
Length = 194
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 110/156 (70%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L+R G V S+GT +HV+LPGP P VY+F T YKQM++
Sbjct: 7 RVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKQMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y RNGIL +L RN +K P+R+Q+ SFD++FT EE V+DTVVEDL
Sbjct: 67 DLLRKDRERYTRNGILHILGRNERIKPGPERFQE--CTDSFDVIFTCEESVYDTVVEDLC 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V VIN++++D E+A +G L ++CQ
Sbjct: 125 SREQQTFQPVHVINMDIQDTLEDATLGAFLICEICQ 160
>sp|O42868|SSU72_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase ssu72
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ssu72 PE=1 SV=1
Length = 197
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 111/156 (71%), Gaps = 2/156 (1%)
Query: 6 AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDL 65
+++C+SNQNRSMEAH +LK G+ V S+GTG+ V+LPGPS+ +PN+Y+FG PY +++ +L
Sbjct: 10 SVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKEL 69
Query: 66 RRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR 125
+D LY NG+L ML RN +K AP RWQD D ++IV T EE+ +D + EDL R
Sbjct: 70 EAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQ--DSIYNIVITCEERCYDAICEDLYRR 127
Query: 126 EQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
+ + V +IN+++KDNHEEA++GG+ DL ++
Sbjct: 128 GETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKL 163
>sp|Q75E60|SSU72_ASHGO RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SSU72 PE=3 SV=1
Length = 281
Score = 167 bits (422), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R VC+SN NRSME+H +LK G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY +++
Sbjct: 85 RLCTVCASNNNRSMESHRVLKEAGYDVSSYGTGSAVRLPGLSIDKPNVYPFGTPYNDIYN 144
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL + E YK NG+L ML RN +K AP++W D+ FD VFT EE+ FD+V EDL
Sbjct: 145 DLLAQSAERYKSNGLLEMLDRNRRIKKAPEKWHDS--QKVFDFVFTCEERCFDSVCEDLM 202
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
R K V VINL+++D++E A IGGR +L + +
Sbjct: 203 NRGGQLNKIVHVINLDIRDDNENAKIGGRAMLELVKAL 240
>sp|A8MSY0|S72L2_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase
SSU72-like protein 2 OS=Homo sapiens PE=3 SV=1
Length = 194
Score = 167 bits (422), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 109/156 (69%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L++ G V S+GT +HV+LPGP P VY+F T YK+M++
Sbjct: 7 RVAVVCVSNVNRSMEAHSILRKKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKEMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y RNGIL +L RN +K P+R+Q+ FD++FT EE V+DTVVEDL
Sbjct: 67 DLLRKDRECYTRNGILHILGRNERIKPGPERFQE--CTDFFDVIFTCEESVYDTVVEDLC 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V VIN+E++D E+A +G L ++CQ
Sbjct: 125 SREQQTFQPVHVINMEIQDTLEDATLGAFLICEICQ 160
>sp|Q4IPC8|SSU72_GIBZE RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=SSU72 PE=3 SV=1
Length = 255
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 110/178 (61%), Gaps = 18/178 (10%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQ 60
K ++ VC+SN NRSMEAH L + + V S+GTG+ V+LPGP++ +PNVY F T Y
Sbjct: 24 KLKFCTVCASNNNRSMEAHLRLSQADYPVISFGTGSLVRLPGPTITQPNVYHFNKTSYDS 83
Query: 61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD---------NALD--------GS 103
MF +L KD LYK NGIL ML RN GVK P+RWQD +A D G
Sbjct: 84 MFKELESKDARLYKNNGILNMLNRNRGVKWGPERWQDWQVGVPRLQHAKDRGSEGTEGGL 143
Query: 104 FDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
DIV T EE+ +D VV+DL R P + V VIN+E+KDNHEEAA+GG+ DL +
Sbjct: 144 VDIVITCEERCWDAVVDDLMNRGSPLNRPVHVINVEIKDNHEEAAVGGQGILDLANSL 201
>sp|Q6C195|SSU72_YARLI RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SSU72 PE=3 SV=1
Length = 193
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
+ VC+SNQNRSMEAH +LK GFDV SYGTG+ V+LPGP+ +PN+Y FGTPY +++
Sbjct: 5 KMCTVCASNQNRSMEAHKVLKEAGFDVESYGTGSAVRLPGPAYDKPNIYAFGTPYDDIYN 64
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
+L +D LY NG+L ML RN +K AP+RW ++ FD+VFT EE+ F+ V +DL
Sbjct: 65 ELSAQDERLYTANGLLTMLDRNRKIKTAPERWVEHK--NVFDVVFTCEERCFEAVCDDLM 122
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
R + + V VIN++++DNHE++ IG + L + +
Sbjct: 123 DRGEKLQRPVHVINVDIRDNHEDSVIGAQGILKLARSL 160
>sp|Q6FMU7|SSU72_CANGA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SSU72 PE=3 SV=1
Length = 204
Score = 163 bits (412), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 2/154 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
++ VC+SN NRSME+H +L+ G++VSSYGTG+ V+LPG S +PNVY FGTPY +++
Sbjct: 8 KFCTVCASNNNRSMESHRILQEAGYEVSSYGTGSAVRLPGLSFDKPNVYPFGTPYNDIYN 67
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL + E YK NG+L ML RN +K AP++WQ+ +FD VFT EE+ FD V EDL
Sbjct: 68 DLLSQSAERYKANGLLQMLDRNRRLKKAPEKWQEGT--KTFDFVFTCEERCFDAVCEDLM 125
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 157
R K V VIN++++D++E A IGGR +L
Sbjct: 126 NRGGRLNKIVHVINIDIRDDNENAKIGGRAILEL 159
>sp|A6NG73|S72L3_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase
SSU72-like protein 3 OS=Homo sapiens PE=3 SV=2
Length = 194
Score = 160 bits (405), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
R A+VC SN NRSMEAH +L+R G V S+GT +HV+LPG P VY+F T YK+M++
Sbjct: 7 RVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATTYKEMYN 66
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL RKD E Y NGIL +L RN +K P+R+Q+ FD++FT EE+V+DTVVEDL
Sbjct: 67 DLLRKDRECYTHNGILHILGRNERIKPGPERFQE--CTEFFDVIFTCEERVYDTVVEDLC 124
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
+REQ + V VIN+++KD E A +G L ++CQ
Sbjct: 125 SREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQ 160
>sp|P53538|SSU72_YEAST RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SSU72 PE=1 SV=1
Length = 206
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 105/154 (68%), Gaps = 2/154 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
++ VC+SN NRSME+H +L+ G++VSSYGTG+ V+LPG S+ +PNVY FGTPY +++
Sbjct: 10 KFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYNDIYN 69
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL + + YK NG+L ML RN +K AP++WQ++ FD VFT EE+ FD V EDL
Sbjct: 70 DLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQEST--KVFDFVFTCEERCFDAVCEDLM 127
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 157
R K V VIN+++KD+ E A IG + +L
Sbjct: 128 NRGGKLNKIVHVINVDIKDDDENAKIGSKAILEL 161
>sp|Q7SFY0|SSU72_NEUCR RNA polymerase II subunit A C-terminal domain phosphatase ssu-72
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=ssu-72 PE=3 SV=1
Length = 266
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 110/178 (61%), Gaps = 18/178 (10%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQ 60
K ++ VC+SNQNRSME H L + V S+GTG+ V+LPGPS+ +PNVY+F T Y
Sbjct: 35 KLKFCTVCASNQNRSMEGHLRLSLANYPVISFGTGSLVRLPGPSITQPNVYKFNETSYDS 94
Query: 61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD----------------NALDGSF 104
++ +L KDP LY+ NG+L ML RN VK P+RWQD + ++G
Sbjct: 95 IYRELEAKDPRLYRANGLLNMLGRNRQVKWGPERWQDWQIGMPRTKHKDDKGADGMEGGV 154
Query: 105 -DIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
D+V T EE+ +D V+EDL R P + V VIN+++KDNHEEA++GGR DL +
Sbjct: 155 ADVVITCEERCWDAVIEDLLNRGSPLNRPVHVINIDIKDNHEEASVGGRAIVDLADSL 212
>sp|Q6CQ61|SSU72_KLULA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SSU72
PE=3 SV=1
Length = 207
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
++ VC+SN NRSME+H +L+ G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY +++
Sbjct: 11 KFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTPYDDIYN 70
Query: 64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
DL + + YK+NG+L ML RN +K AP++W D FD VFT EE+ FD+V EDL
Sbjct: 71 DLISQSEDRYKQNGVLEMLDRNRKLKKAPEKWHDGR--KVFDFVFTCEERCFDSVCEDLM 128
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 157
R +IN+++KD++E A IGGR L
Sbjct: 129 NRGGQLNLIAHIINIDIKDDNENAKIGGRAILRL 162
>sp|Q6BYP7|SSU72_DEBHA RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SSU72 PE=3 SV=2
Length = 223
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 107/153 (69%), Gaps = 8/153 (5%)
Query: 8 VCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRR 67
VC++N NRSME+H LK G++V S+GTG+ V+LPGPS+ +PNVYEFGTPY ++ DL
Sbjct: 11 VCAANNNRSMESHKQLKDAGYNVRSFGTGSAVRLPGPSVDKPNVYEFGTPYDDIYRDLTS 70
Query: 68 KD-PELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR- 125
++ ++Y+ NG++ M+ RN +K AP++W +NA G FD+V T EE+ FD V++DL R
Sbjct: 71 QEYHKMYESNGLIRMINRNRHIKRAPEKWHNNASAGKFDLVITCEERCFDLVLDDLMVRL 130
Query: 126 ------EQPFMKTVLVINLEVKDNHEEAAIGGR 152
+ + V +IN+++KD++E A IGG+
Sbjct: 131 VNKDQADTEIKQAVHIINIDIKDDYENAVIGGK 163
>sp|Q2HFZ9|SSU72_CHAGB RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=SSU72 PE=3 SV=1
Length = 257
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 18/175 (10%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQ 60
K ++ VC+SNQNRSME H L + + V S+GTG+ V+LPGP++ +PNVY+F T Y
Sbjct: 26 KLKFCTVCASNQNRSMEGHLRLAQANYPVISFGTGSLVRLPGPTITQPNVYKFNETSYDS 85
Query: 61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALD-----------------GS 103
++ +L KDP LY+ NG+L ML RN +K P+RWQD + G
Sbjct: 86 IYRELEAKDPRLYRANGLLNMLGRNRVIKWGPERWQDWQVGMPRVKHEKDQGSIGMEAGV 145
Query: 104 FDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLC 158
DIV T EE+ +D VV+DL R P + V VIN+++KDNH++A+IGG DL
Sbjct: 146 PDIVITCEERCWDAVVDDLLNRGSPLNRPVHVINIDIKDNHQDASIGGGAMVDLA 200
>sp|Q4WHY5|SSU72_ASPFU RNA polymerase II subunit A C-terminal domain phosphatase ssu72
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=ssu72 PE=3 SV=1
Length = 287
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 107/179 (59%), Gaps = 22/179 (12%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKR--HGFDVSSYGTGAHVKLPGPSLREPNVYEFGT-PY 58
K ++ VC+SNQNRSMEAH L F V S+GTG+ V+LPGPS+ +PNVY F T Y
Sbjct: 52 KLKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSY 111
Query: 59 KQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD----------------NALD- 101
QM+D+L KD LY+ NG+L ML RN +K P+R+QD AL
Sbjct: 112 SQMYDELLAKDERLYRNNGLLNMLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGT 171
Query: 102 --GSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLC 158
G+ D++ T EE+ +D VV+DL + + V V N++++DNHEEA +GG+ +L
Sbjct: 172 EGGTVDVIITCEERCWDAVVDDLMNKGAALNRPVHVFNVDIRDNHEEALVGGKAILELA 230
>sp|Q2UPU5|SSU72_ASPOR RNA polymerase II subunit A C-terminal domain phosphatase ssu72
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=ssu72 PE=3 SV=1
Length = 262
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 22/182 (12%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKR--HGFDVSSYGTGAHVKLPGPSLREPNVYEFGT-PY 58
K R+ VC+SNQNRSMEAH L F V S+GTG+ V+LPGPS+ +PNVY F T Y
Sbjct: 27 KLRFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSY 86
Query: 59 KQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQD----------------NALD- 101
QM+++L KD LY+ NG+L ML+RN +K P+R+QD AL
Sbjct: 87 SQMYEELYSKDERLYRNNGLLNMLERNRNLKWGPERFQDWVPGMPRVDHVAKGDKGALGT 146
Query: 102 --GSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
G D++ T EE+ +D VV+DL + + V V N+++KDNHEEA +GG+ +L
Sbjct: 147 EGGVVDVIITCEERCWDAVVDDLMNKGSLLNRPVHVFNVDIKDNHEEALVGGKAILELAN 206
Query: 160 EV 161
+
Sbjct: 207 RL 208
>sp|P0CR76|SSU72_CRYNJ RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SSU72 PE=3 SV=1
Length = 187
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 95/140 (67%), Gaps = 3/140 (2%)
Query: 23 LKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPML 82
+ ++ F V S GTG+ V+LPGP++ +PNVY FGTPY ++ DL +DP+LY RNGILPML
Sbjct: 18 ITKNSFRVVSAGTGSAVRLPGPAIDKPNVYRFGTPYDDIYRDLESQDPQLYTRNGILPML 77
Query: 83 KRNIGVKAAPQRWQDNALDGSF-DIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVK 141
RN VK AP++WQ+ L D+V T EE+ +D V +DL TR + + + +IN+E+K
Sbjct: 78 DRNRKVKKAPEKWQE--LKSVLADVVITCEERCYDAVCDDLLTRSGEYNRPIHIINIEIK 135
Query: 142 DNHEEAAIGGRLTFDLCQEV 161
DN EEA I G+ +L + +
Sbjct: 136 DNPEEAHIAGQSILELARAI 155
>sp|P0CR77|SSU72_CRYNB RNA polymerase II subunit A C-terminal domain phosphatase SSU72
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SSU72 PE=3 SV=1
Length = 187
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 95/140 (67%), Gaps = 3/140 (2%)
Query: 23 LKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPML 82
+ ++ F V S GTG+ V+LPGP++ +PNVY FGTPY ++ DL +DP+LY RNGILPML
Sbjct: 18 ITKNSFRVVSAGTGSAVRLPGPAIDKPNVYRFGTPYDDIYRDLESQDPQLYTRNGILPML 77
Query: 83 KRNIGVKAAPQRWQDNALDGSF-DIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVK 141
RN VK AP++WQ+ L D+V T EE+ +D V +DL TR + + + +IN+E+K
Sbjct: 78 DRNRKVKKAPEKWQE--LKSVLADVVITCEERCYDAVCDDLLTRSGEYNRPIHIINIEIK 135
Query: 142 DNHEEAAIGGRLTFDLCQEV 161
DN EEA I G+ +L + +
Sbjct: 136 DNPEEAHIAGQSILELARAI 155
>sp|Q6KYZ5|ARGC_PICTO N-acetyl-gamma-glutamyl-phosphate reductase OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=argC PE=3 SV=1
Length = 347
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 49 PNVYEFGTPYKQMFDDLRRKDPELYK 74
P++YE GT M D R KDP+LY+
Sbjct: 85 PDIYEIGTKIIDMSADFRLKDPDLYR 110
>sp|P09152|NARG_ECOLI Respiratory nitrate reductase 1 alpha chain OS=Escherichia coli
(strain K12) GN=narG PE=1 SV=4
Length = 1247
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 82 LKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDT 117
L + GVK WQDN L+G D+V T + ++ T
Sbjct: 744 LGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSST 779
>sp|B0S169|SYT_FINM2 Threonine--tRNA ligase OS=Finegoldia magna (strain ATCC 29328)
GN=thrS PE=3 SV=1
Length = 634
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 43 GPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKR-NIGVKAAPQRWQDNALD 101
GPS+ Y+ T +K + +DL + + E+ K P L R I K A +R+++ D
Sbjct: 95 GPSIDSGFYYDLDTDHKFVPEDLEKIEAEMKKIVKENPKLVRVEISRKEALERFKNEGQD 154
Query: 102 GSFDIVFTFEEKVFDTVVE 120
D++ F+E T+ E
Sbjct: 155 YKVDLIENFDEDATITLYE 173
>sp|Q55AP1|GRLA_DICDI Metabotropic glutamate receptor-like protein A OS=Dictyostelium
discoideum GN=grlA PE=2 SV=1
Length = 798
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 2 KYRYAMVCSSNQNRSMEAHYLLKRHG 27
KY+YA VCSSN S+ + LL HG
Sbjct: 530 KYQYANVCSSNDQGSVALYILLVFHG 555
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,237,289
Number of Sequences: 539616
Number of extensions: 3226934
Number of successful extensions: 6289
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6225
Number of HSP's gapped (non-prelim): 30
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)