BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029617
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK ++ ++ AE +L
Sbjct: 17 TIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLL 74
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190
GHL+ K A G+ G+R+V+N G QSVYH+HLHVLGGRQ+ WPPG
Sbjct: 75 GHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK ++ ++ AE +L
Sbjct: 17 TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLL 74
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190
GHL+ K A G+ G+R+V+N G QSVYH+HLHVLGGRQ+ WPPG
Sbjct: 75 GHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK ++ ++ AE +L
Sbjct: 17 TIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLL 74
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190
GHL+ K A G+ G+R+V+N G QSVYH+HLHVLGGRQ+ WPPG
Sbjct: 75 GHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK ++ ++ AE +L
Sbjct: 17 TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLL 74
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190
GHL+ K A G+ G+R+V+N G QSVYH+HLHVLGGRQ+ WPPG
Sbjct: 75 GHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK ++ ++ AE +L
Sbjct: 6 TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLL 63
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190
GHL+ K A G+ G+R+V+N G QSVYH+HLHVLGGRQ+ WPPG
Sbjct: 64 GHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 115
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK ++ ++ AE +L
Sbjct: 19 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDDESLL 76
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190
GHL+ K A G+ G+R+V+N G QSVYH+HLHVLGGRQ+ WPPG
Sbjct: 77 GHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 128
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK ++ ++ AE +L
Sbjct: 17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDDESLL 74
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190
GHL+ K A G+ G+R+V+N G QSVYH+HLHVLGGRQ+ WPPG
Sbjct: 75 GHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK ++ ++ AE +L
Sbjct: 17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDDESLL 74
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190
GHL+ K A G+ G+R+V+N G QSVYH+HLHVLGGRQ+ WPPG
Sbjct: 75 GHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK ++ ++ AE +L
Sbjct: 16 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDDESLL 73
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190
GHL+ K A G+ G+R+V+N G QSVYH+HLHVLGGRQ+ WPPG
Sbjct: 74 GHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 125
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 3/108 (2%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII +EIPS IVY+D+ V AFRDI+PQAP H+LIIP + T+ A H L
Sbjct: 5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQAL 62
Query: 139 GHLLCASKIVAEKEGIL-DGFRVVINNGPGACQSVYHLHLHVLGGRQL 185
G ++ + +AE+EGI DG+R+++N Q VYH+H+H+LGGR L
Sbjct: 63 GRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
IF KI K+IPS+IVYED+++ AF+DINP AP+H+L+IPK + +L + + +
Sbjct: 9 CIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPK--QHIASLNEITEENEAFI 66
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKW 187
G +L ++ +KE +G+RVV N G A Q+V H+H H+LGG++L W
Sbjct: 67 GKVLYKVSLIGKKE-CPEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAW 114
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
TIF KII +EIPS IVY+D+ V AFRDI+PQAP H+LIIP + T+ A H L
Sbjct: 5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQAL 62
Query: 139 GHLLCASKIVAEKEGIL-DGFRVVINNGPGACQSVYHLHLHVLGGRQL 185
G ++ + +AE+EGI DG+R+++N Q VYH+ +H+LGGR L
Sbjct: 63 GRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIAMHLLGGRPL 110
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 80 IFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILG 139
+F KII +E+PS+I YEDE+V+A +DINP APVHVLIIPK + + + + + IL
Sbjct: 38 VFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPK--EHIANVKEINESNAQILI 95
Query: 140 HLLCASKIVAEKEGILD-GFRVVINNGPGACQSVYHLHLHVLGG 182
+ A+ VAE GI + G+R++ N G A Q+V+HLH H+LGG
Sbjct: 96 DIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGG 139
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIP-KFRDGLTTLAKAEARHGDI 137
IF KI EIPS+ VYED++VLAF D+NP AP H+L++P K D L + E DI
Sbjct: 6 CIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEM---DI 62
Query: 138 LGHL-LCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQL 185
+ H+ + +KI EK GFRV+ N G Q V HLH H+L G++L
Sbjct: 63 VSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKL 111
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 8/104 (7%)
Query: 80 IFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILG 139
IF K+I EIPS VYED+ V+AF DI PQAP H L+IPK G L A+ + L
Sbjct: 31 IFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPK--KGSRNLLDADT---ETLF 85
Query: 140 HLLCASKIVA---EKEGILDGFRVVINNGPGACQSVYHLHLHVL 180
++ A + +A +K DG V+ N + Q+VYHLH H++
Sbjct: 86 PVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHII 129
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 80 IFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPK--FRDGL----TTLAKAEAR 133
+F KI+A +IPSS VYEDE VLAF DI+ H L+IPK R+ L T A AR
Sbjct: 39 LFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFAR 98
Query: 134 HGDILGHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 180
I L A+K DG ++ NN A Q+V+H H+H++
Sbjct: 99 IPKIARALQKATKA--------DGLNIINNNEETAGQTVFHAHVHLV 137
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 80 IFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFR-DGLTTLAKAEARHGDIL 138
IF KIIA +IPS+ VYEDE VLAF DI+ H L+IPK + + A+
Sbjct: 8 IFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQ---Y 64
Query: 139 GHLL--CASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 180
H + A I E E I G + NNG A QSV+H H+H++
Sbjct: 65 FHAVPKIARAIRDEFEPI--GLNTLNNNGEKAGQSVFHYHMHII 106
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPK-FRDGLTTLAKAEARHGDI 137
IF KII +IP + V E K LAF DINP + H+L+IPK L L +A +
Sbjct: 13 CIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGV 72
Query: 138 LGHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 180
L L AS+ VA +G + + V+ NNG A Q V H+H H++
Sbjct: 73 L--LAKASRAVAGPDGSMQ-YNVLQNNGSLAHQEVPHVHFHII 112
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 80 IFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKF-RDGLTTLAKAEARHGDIL 138
IF KII +I S VYEDE VLAF DI+ H L+IPK + + L +I
Sbjct: 12 IFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTP------EIA 65
Query: 139 GHLLC-----ASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 180
H+ A+ I AE + GF ++ NNG A Q+V+H HLH++
Sbjct: 66 SHIFSVVPKIANAIKAEFNPV--GFNLLNNNGEKAGQTVFHFHLHLI 110
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 80 IFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILG 139
+F I++ + P+ +YEDE L DI P H L+IPK T E + G
Sbjct: 8 VFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPET----VAG 63
Query: 140 HLLCASKI--VAEKEGI-LDGFRVVINNGPGACQSVYHLHLHVL---GGRQLKWPPG 190
+I A + G+ DG + IN+G A Q+V+H+HLHV+ G +L + G
Sbjct: 64 MAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKG 120
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 81 FDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPK--FRDGLTTLAKAEARHGDIL 138
F II +E+ VYEDEK A D P + H L+IPK F + L D L
Sbjct: 3 FCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEA-------DEDTL 55
Query: 139 GHLLCASKIVAE--KEGI-LDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWP 188
L K+V+ K+ + DG R++ N G A Q ++HLH+H++ + +P
Sbjct: 56 AELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYP 108
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 79 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDIL 138
+IF KII +E+P VYED+ V+AF I P H L++P R+ + ++
Sbjct: 7 SIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVP--REEIDNWQDVDSA---AF 61
Query: 139 GHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQL 185
++ S+++ + + FR + A V HLH+HV R L
Sbjct: 62 NRVMGVSQLIG--KAVCKAFRTERSGLIIAGLEVPHLHVHVFPTRSL 106
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 91 SSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHG--DILGHLLCASKIV 148
++I+YE +++ A D P + H L+IPK K E G D + HL+ K
Sbjct: 18 ANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLV--QKFG 75
Query: 149 AEKEGILDGFRVVINNGPGACQSVYHLHLHVL 180
E+ IL NNG Q V+H+H HV+
Sbjct: 76 FERYNILQ------NNGNH--QEVFHVHFHVI 99
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 89 IPSS-IVYEDEKVLAFRDINPQAPVHVLIIPK-FRDGLTTLAKAEARHGDILGHLLCASK 146
IP+ I Y F ++ P HVL+ PK LT L AE D+ + A K
Sbjct: 306 IPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAET--ADLF---IVAKK 360
Query: 147 IVA--EKEGILDGFRVVINNGPGACQSVYHLHLHVLGGR 183
+ A EK + + + +G A Q+V H+H+H+L R
Sbjct: 361 VQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 399
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 90 PSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASK--- 146
PS + + E A + P P HVL+ P L + + D + L ++
Sbjct: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCP-----LRPVERFHDLRPDEVADLFQTTQRVG 66
Query: 147 IVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 180
V EK + +GP A Q+V H+H+HVL
Sbjct: 67 TVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 100
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 90 PSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASK--- 146
PS + + E A + P P HVL+ P L + + D + L ++
Sbjct: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCP-----LRPVERFHDLRPDEVADLFQTTQRVG 66
Query: 147 IVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 180
V EK +GP A Q+V H+H+HVL
Sbjct: 67 TVVEKHFHGTSLTFSXQDGPEAGQTVKHVHVHVL 100
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 90 PSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASK--- 146
PS + + E A + P P HVL+ P L + + D + L ++
Sbjct: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCP-----LRPVERFHDLRPDEVADLFQTTQRVG 66
Query: 147 IVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 180
V EK + +GP A Q+V H+++HVL
Sbjct: 67 TVVEKHFHGTSLTFSMQDGPEAGQTVKHVNVHVL 100
>pdb|3SZQ|A Chain A, Structure Of An S. Pombe AptxDNAAMPZN COMPLEX
Length = 206
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 84 IIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRD-GLTTLAKAEARHGDILGHLL 142
I + E +++Y D+ V+ RD+ P++ +H+L++ RD LT + E ++ H
Sbjct: 16 IESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMT--RDPHLTHVHPLEI----MMKHRS 69
Query: 143 CASKIVAEKEGILDGF 158
K+V+ +G L G
Sbjct: 70 LVEKLVSYVQGDLSGL 85
>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
Length = 204
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 84 IIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRD-GLTTLAKAEARHGDILGHLL 142
I + E +++Y D+ V+ RD+ P++ +H+L++ RD LT + E ++ H
Sbjct: 14 IESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMT--RDPHLTHVHPLEI----MMKHRS 67
Query: 143 CASKIVAEKEGILDGF 158
K+V+ +G L G
Sbjct: 68 LVEKLVSYVQGDLSGL 83
>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
Length = 204
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 84 IIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRD-GLTTLAKAEARHGDILGHLL 142
I + E +++Y D+ V+ RD+ P++ +H+L++ RD LT + E ++ H
Sbjct: 14 IESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMT--RDPHLTHVHPLEI----MMKHRS 67
Query: 143 CASKIVAEKEGILDGF 158
K+V+ +G L G
Sbjct: 68 LVEKLVSYVQGDLSGL 83
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 120 FRDGLTTLAKAEARHGDILGH-LLCASKIVAEKE 152
RDGL+ LAK GDI G L C ++V +++
Sbjct: 345 LRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQ 378
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 120 FRDGLTTLAKAEARHGDILGH-LLCASKIVAEKE 152
RDGL+ LAK GDI G L C ++V +++
Sbjct: 332 LRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQ 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,354,309
Number of Sequences: 62578
Number of extensions: 150950
Number of successful extensions: 357
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 32
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)