Query 029617
Match_columns 190
No_of_seqs 208 out of 1185
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 15:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3275 Zinc-binding protein o 100.0 7.8E-41 1.7E-45 252.1 12.5 125 61-190 3-127 (127)
2 PRK10687 purine nucleoside pho 100.0 4.3E-33 9.3E-38 213.3 12.2 108 77-186 3-111 (119)
3 cd01276 PKCI_related Protein K 100.0 1E-30 2.3E-35 193.3 12.2 103 78-182 1-104 (104)
4 COG0537 Hit Diadenosine tetrap 100.0 2.3E-30 5.1E-35 202.8 13.0 104 77-185 1-107 (138)
5 cd01277 HINT_subgroup HINT (hi 100.0 1.3E-28 2.9E-33 181.1 12.6 103 78-182 1-103 (103)
6 cd01275 FHIT FHIT (fragile his 100.0 1E-27 2.2E-32 183.8 12.4 104 79-184 1-105 (126)
7 cd01278 aprataxin_related apra 99.9 4.4E-26 9.6E-31 168.9 11.9 100 78-181 1-104 (104)
8 PF01230 HIT: HIT domain; Int 99.9 6.5E-26 1.4E-30 166.5 10.3 98 86-185 1-98 (98)
9 PRK11720 galactose-1-phosphate 99.9 7.8E-25 1.7E-29 194.4 11.7 126 60-190 180-315 (346)
10 TIGR00209 galT_1 galactose-1-p 99.9 1.6E-24 3.5E-29 192.4 11.7 119 60-183 180-303 (347)
11 cd00608 GalT Galactose-1-phosp 99.9 3.9E-24 8.5E-29 188.5 11.6 120 60-184 170-296 (329)
12 cd00468 HIT_like HIT family: H 99.9 1.3E-22 2.7E-27 144.3 10.0 83 94-181 1-86 (86)
13 PLN02643 ADP-glucose phosphory 99.9 2.7E-22 5.8E-27 177.5 12.1 116 60-184 184-304 (336)
14 PF11969 DcpS_C: Scavenger mRN 99.9 3.9E-22 8.4E-27 151.9 5.8 99 78-182 1-104 (116)
15 KOG3379 Diadenosine polyphosph 99.8 4.7E-19 1E-23 137.4 10.6 94 90-185 16-109 (150)
16 KOG4359 Protein kinase C inhib 99.6 5.3E-15 1.1E-19 115.4 10.1 104 73-180 27-134 (166)
17 PF02744 GalP_UDP_tr_C: Galact 99.5 1.4E-14 3.1E-19 116.8 7.9 107 73-181 8-119 (166)
18 COG1085 GalT Galactose-1-phosp 99.5 1.5E-13 3.3E-18 121.4 8.9 118 59-181 166-291 (338)
19 KOG2958 Galactose-1-phosphate 99.1 7.2E-11 1.6E-15 102.2 6.4 117 60-182 185-309 (354)
20 PF04677 CwfJ_C_1: Protein sim 98.8 7.4E-08 1.6E-12 74.1 11.6 101 74-182 8-108 (121)
21 KOG0562 Predicted hydrolase (H 98.8 5.3E-09 1.1E-13 84.0 5.1 92 90-183 14-106 (184)
22 KOG2476 Uncharacterized conser 98.1 3.5E-05 7.5E-10 70.9 10.8 101 74-182 316-416 (528)
23 PLN03103 GDP-L-galactose-hexos 97.7 0.00016 3.4E-09 65.8 7.8 73 97-181 168-241 (403)
24 KOG3969 Uncharacterized conser 97.3 0.0023 5.1E-08 55.6 9.4 89 90-183 159-257 (310)
25 PRK05471 CDP-diacylglycerol py 96.8 0.0054 1.2E-07 52.7 7.5 86 91-180 55-144 (252)
26 TIGR00672 cdh CDP-diacylglycer 96.8 0.0052 1.1E-07 52.7 7.3 86 91-180 54-143 (250)
27 cd00608 GalT Galactose-1-phosp 96.4 0.014 2.9E-07 51.8 7.9 64 113-181 95-161 (329)
28 KOG2477 Uncharacterized conser 96.4 0.031 6.8E-07 52.4 10.3 100 76-182 406-507 (628)
29 KOG2720 Predicted hydrolase (H 96.4 0.0038 8.3E-08 55.9 4.1 72 96-180 165-237 (431)
30 PF02611 CDH: CDP-diacylglycer 96.4 0.014 2.9E-07 49.5 7.0 84 93-180 28-115 (222)
31 COG4360 APA2 ATP adenylyltrans 96.3 0.0034 7.5E-08 53.8 3.4 71 99-182 93-163 (298)
32 COG1085 GalT Galactose-1-phosp 95.7 0.06 1.3E-06 48.2 8.4 102 75-181 38-162 (338)
33 PLN02643 ADP-glucose phosphory 95.5 0.091 2E-06 46.9 8.8 64 113-181 109-175 (336)
34 COG2134 Cdh CDP-diacylglycerol 95.0 0.16 3.5E-06 42.8 8.3 83 93-180 57-144 (252)
35 COG5075 Uncharacterized conser 94.2 0.08 1.7E-06 45.6 4.7 88 89-181 153-250 (305)
36 PRK11720 galactose-1-phosphate 93.4 0.53 1.2E-05 42.2 8.8 65 112-181 106-171 (346)
37 TIGR00209 galT_1 galactose-1-p 92.5 0.9 2E-05 40.8 9.0 65 112-181 106-171 (347)
38 KOG2958 Galactose-1-phosphate 62.3 16 0.00035 32.5 5.0 142 36-180 8-175 (354)
39 PF03432 Relaxase: Relaxase/Mo 62.2 18 0.00038 29.7 5.1 35 140-180 73-108 (242)
40 PF01087 GalP_UDP_transf: Gala 61.4 19 0.00042 29.1 5.0 25 157-181 153-178 (183)
41 PF14317 YcxB: YcxB-like prote 59.2 21 0.00046 22.4 4.1 26 92-121 23-48 (62)
42 PRK13878 conjugal transfer rel 47.4 54 0.0012 32.7 6.4 34 141-180 86-120 (746)
43 PF01076 Mob_Pre: Plasmid reco 38.0 1.3E+02 0.0027 24.6 6.4 41 139-183 101-142 (196)
44 cd00165 S4 S4/Hsp/ tRNA synthe 27.7 43 0.00092 20.9 1.6 13 91-103 57-69 (70)
45 PF01446 Rep_1: Replication pr 26.8 2.6E+02 0.0057 23.6 6.7 43 136-180 40-87 (233)
46 TIGR01363 strep_his_triad stre 25.5 1.5E+02 0.0032 26.7 5.0 20 167-186 321-341 (348)
47 smart00538 POP4 A domain found 25.4 1.1E+02 0.0024 22.2 3.6 27 91-121 31-57 (92)
48 PRK09710 lar restriction allev 24.9 76 0.0016 21.8 2.4 11 73-83 3-13 (64)
49 COG0564 RluA Pseudouridylate s 23.3 68 0.0015 28.0 2.5 16 89-104 76-91 (289)
50 PRK03879 ribonuclease P protei 23.1 1.3E+02 0.0028 22.1 3.5 27 90-121 32-58 (96)
51 PF12239 DUF3605: Protein of u 21.8 4.1E+02 0.009 21.1 9.3 79 98-180 72-156 (158)
52 cd01617 DCX Ubiquitin-like dom 20.6 2.1E+02 0.0046 19.8 4.2 28 99-128 2-29 (80)
No 1
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-41 Score=252.06 Aligned_cols=125 Identities=59% Similarity=0.966 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHhcCCCCCceeheecccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHH
Q 029617 61 DEEAAAKAAALNAGSEAPTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGH 140 (190)
Q Consensus 61 ~e~~~a~~~~~~~~~~~~CiFC~Ii~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ 140 (190)
+|+++|..+++ .+++|+||+|+++|+|+.+|||||.++||.|+.|++|+|+|||||+| +..++.+++.+.++|++
T Consensus 3 ~e~~~a~~a~~---~~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~h--i~~~s~aed~~~e~Lg~ 77 (127)
T KOG3275|consen 3 SEVEKAQTAAA---GAAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKH--ITQLSKAEDRDDELLGH 77 (127)
T ss_pred chHHHHhhhcc---cCCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeeccc--ccchhhcccCCHHHHHH
Confidence 36666665533 27899999999999999999999999999999999999999999999 78888888888999999
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEecCCCCCCccceEEEEEEcCCCCCCCCC
Q 029617 141 LLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVLGGRQLKWPPG 190 (190)
Q Consensus 141 ll~~ak~v~~~~~~~~gyni~in~G~~agqsV~HlHlHVIPR~~~~wp~~ 190 (190)
+|.+++++++++|+.+|||+++|+|..++|+|+|+|+||||+++|+||||
T Consensus 78 ll~~~k~vak~~Gl~~gYrvv~NnG~~g~QsV~HvH~HvlgGrqm~WPpg 127 (127)
T KOG3275|consen 78 LLPVAKKVAKALGLEDGYRVVQNNGKDGHQSVYHVHLHVLGGRQMQWPPG 127 (127)
T ss_pred HHHHHHHHHHHhCcccceeEEEcCCcccceEEEEEEEEEeCCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999998
No 2
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=100.00 E-value=4.3e-33 Score=213.35 Aligned_cols=108 Identities=50% Similarity=0.875 Sum_probs=97.9
Q ss_pred CCceeheecccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhC-CC
Q 029617 77 APTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEG-IL 155 (190)
Q Consensus 77 ~~CiFC~Ii~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~-~~ 155 (190)
++|+||+|++|+.|+.+|||||.+++|+|.+|.+|||+|||||+| +.++.++++++..++.+++..+++++++.+ .+
T Consensus 3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H--~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~ 80 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAE 80 (119)
T ss_pred CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhH--hCChhHCChHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999999999999999999 666777777788899999998888877554 36
Q ss_pred CCeEEEEecCCCCCCccceEEEEEEcCCCCC
Q 029617 156 DGFRVVINNGPGACQSVYHLHLHVLGGRQLK 186 (190)
Q Consensus 156 ~gyni~in~G~~agqsV~HlHlHVIPR~~~~ 186 (190)
+|||+++|+|+.+||+|+|+|+|||||+++.
T Consensus 81 ~g~~l~~n~G~~agQ~V~HlHiHvI~g~~~~ 111 (119)
T PRK10687 81 DGYRLIMNTNRHGGQEVYHIHMHLLGGRPLG 111 (119)
T ss_pred CceEEEEeCCCcCCcccCEEEEEECCCcccC
Confidence 8999999999999999999999999998864
No 3
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.97 E-value=1e-30 Score=193.33 Aligned_cols=103 Identities=56% Similarity=0.923 Sum_probs=94.3
Q ss_pred CceeheecccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCC-CC
Q 029617 78 PTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGI-LD 156 (190)
Q Consensus 78 ~CiFC~Ii~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~-~~ 156 (190)
+|+||+|+++|.+.++|||||.+++|.|.+|.+|||+||+||+| +.++.++++++.++++++++.++++.+.++. ++
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H--~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 78 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKH--IASLSDATEEDEELLGHLLSAAAKVAKDLGIAED 78 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecce--eCChHHcccccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 59999999999999999999999999999999999999999999 5556666667788999999999989888764 68
Q ss_pred CeEEEEecCCCCCCccceEEEEEEcC
Q 029617 157 GFRVVINNGPGACQSVYHLHLHVLGG 182 (190)
Q Consensus 157 gyni~in~G~~agqsV~HlHlHVIPR 182 (190)
|||+++|+|+.+||+++|+|+|||+|
T Consensus 79 ~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 79 GYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred CEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 99999999999999999999999986
No 4
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=202.80 Aligned_cols=104 Identities=42% Similarity=0.637 Sum_probs=89.1
Q ss_pred CCceeheecccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhC---
Q 029617 77 APTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEG--- 153 (190)
Q Consensus 77 ~~CiFC~Ii~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~--- 153 (190)
+.|+||+|+.+|+|+.+|||||++++|+|++|.+|||+|||||+| +.++.++++ +++++|+..+++++++++
T Consensus 1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h--~~~l~~l~~---~~~~~l~~~~~~ia~al~~~~ 75 (138)
T COG0537 1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRH--VSDLEDLDP---EELAELFLLAQKIAKALKEAF 75 (138)
T ss_pred CCceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccc--hhhhhhCCH---HHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999999999999 556666554 455666666666665532
Q ss_pred CCCCeEEEEecCCCCCCccceEEEEEEcCCCC
Q 029617 154 ILDGFRVVINNGPGACQSVYHLHLHVLGGRQL 185 (190)
Q Consensus 154 ~~~gyni~in~G~~agqsV~HlHlHVIPR~~~ 185 (190)
.++|||+++|+|..+||.|+|+|+|||||++.
T Consensus 76 ~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~ 107 (138)
T COG0537 76 GADGYNIGINNGKAAGQEVFHLHIHIIPRYKG 107 (138)
T ss_pred CCCceEEEEecCcccCcCcceEEEEEcCCcCC
Confidence 37999999999999999999999999999874
No 5
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.96 E-value=1.3e-28 Score=181.10 Aligned_cols=103 Identities=41% Similarity=0.522 Sum_probs=89.0
Q ss_pred CceeheecccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 029617 78 PTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDG 157 (190)
Q Consensus 78 ~CiFC~Ii~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~g 157 (190)
+|+||+|+++|.+.++|||+|+++||.|.+|.+|||+||+||+| +.++.++++++...++.+++.+.+..++...++|
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H--~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~ 78 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKH--YENLLDLDPEELAELILAAKKVARALKKALKADG 78 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccc--cCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 59999999999988899999999999999999999999999999 6666666667777777777655544444434789
Q ss_pred eEEEEecCCCCCCccceEEEEEEcC
Q 029617 158 FRVVINNGPGACQSVYHLHLHVLGG 182 (190)
Q Consensus 158 yni~in~G~~agqsV~HlHlHVIPR 182 (190)
||+++|+|+.+||+++|+|+|||||
T Consensus 79 ~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 79 LNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred eEEEEeCCcccCcccCEEEEEEccC
Confidence 9999999999999999999999997
No 6
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.95 E-value=1e-27 Score=183.77 Aligned_cols=104 Identities=23% Similarity=0.306 Sum_probs=89.8
Q ss_pred ceeheecccccC-ccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 029617 79 TIFDKIIAKEIP-SSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDG 157 (190)
Q Consensus 79 CiFC~Ii~~e~p-~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~g 157 (190)
|+||+|+++|.+ .++|||+|++++|+|.+|.+|||+||+||+| ..++.++++++...+..++..+.+.+++...++|
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H--~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~ 78 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRH--VPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDG 78 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccc--cCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999887 7899999999999999999999999999999 5566666667777777777665555555444789
Q ss_pred eEEEEecCCCCCCccceEEEEEEcCCC
Q 029617 158 FRVVINNGPGACQSVYHLHLHVLGGRQ 184 (190)
Q Consensus 158 yni~in~G~~agqsV~HlHlHVIPR~~ 184 (190)
||+++|+|+.+||+++|+|+|||||+.
T Consensus 79 ~n~~~~~g~~~gq~v~H~HiHiiPR~~ 105 (126)
T cd01275 79 FNIGINDGKAGGGIVPHVHIHIVPRWN 105 (126)
T ss_pred eEEEEeCCcccCCCcCEEEEEEeCCcC
Confidence 999999999999999999999999964
No 7
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.94 E-value=4.4e-26 Score=168.86 Aligned_cols=100 Identities=32% Similarity=0.471 Sum_probs=86.8
Q ss_pred Cceeheeccccc--CccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHh-C-
Q 029617 78 PTIFDKIIAKEI--PSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKE-G- 153 (190)
Q Consensus 78 ~CiFC~Ii~~e~--p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~-~- 153 (190)
.|+||+|+++|. +.++|||||++++|.|.+|.+|||+||+||+| +.++.++++++.++++++++.+.+.+++. +
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h--~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~ 78 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEH--IASLKALTKEDVPLLEHMETVGREKLLRSDNT 78 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCC--CCChHHCCHhHHHHHHHHHHHHHHHHHHHcCC
Confidence 499999999987 48999999999999999999999999999999 66777777788899999998877744442 2
Q ss_pred CCCCeEEEEecCCCCCCccceEEEEEEc
Q 029617 154 ILDGFRVVINNGPGACQSVYHLHLHVLG 181 (190)
Q Consensus 154 ~~~gyni~in~G~~agqsV~HlHlHVIP 181 (190)
.++|||+++|.||. |+|+|+|+|||.
T Consensus 79 ~~~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 79 DPSEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred CccCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 26799999999885 899999999984
No 8
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.93 E-value=6.5e-26 Score=166.48 Aligned_cols=98 Identities=39% Similarity=0.573 Sum_probs=76.7
Q ss_pred ccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Q 029617 86 AKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDGFRVVINNG 165 (190)
Q Consensus 86 ~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gyni~in~G 165 (190)
++|+|+.+|||||+++||+|.+|..|||+|||||+| +.++.++++++...+..+++.+.+.+++...++|||+.+|+|
T Consensus 1 ~~e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H--~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g 78 (98)
T PF01230_consen 1 RGEIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRH--VESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNG 78 (98)
T ss_dssp TTSSHCEEEEE-SSEEEEEESSTSSTTEEEEEESST--GSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEES
T ss_pred CCCCCeeEEEECCCEEEEEcCCCCCCeEEEEEeccc--ccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccch
Confidence 368889999999999999999999999999999999 667777766555555544443333333322368999999999
Q ss_pred CCCCCccceEEEEEEcCCCC
Q 029617 166 PGACQSVYHLHLHVLGGRQL 185 (190)
Q Consensus 166 ~~agqsV~HlHlHVIPR~~~ 185 (190)
+.+||+|+|+|+|||||++.
T Consensus 79 ~~~gq~v~HlH~HviPR~~~ 98 (98)
T PF01230_consen 79 PAAGQSVPHLHFHVIPRYKH 98 (98)
T ss_dssp GGGTSSSSS-EEEEEEEST-
T ss_pred hhhcCccCEEEEEEecccCC
Confidence 99999999999999999863
No 9
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.92 E-value=7.8e-25 Score=194.38 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHhcCCCCCceeheecccccC--ccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHH
Q 029617 60 NDEEAAAKAAALNAGSEAPTIFDKIIAKEIP--SSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDI 137 (190)
Q Consensus 60 ~~e~~~a~~~~~~~~~~~~CiFC~Ii~~e~p--~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~ 137 (190)
..|++.++++ ++..+.|+||+|+++|.+ .++|||||+|+||+|++|.+|||+||+||+| ..++.++++++...
T Consensus 180 ~~e~~~~~~y---~~~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH--~~~~~dl~dee~~~ 254 (346)
T PRK11720 180 EREDRLQRAY---FAEHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAH--VLRLTDLTDAQRDD 254 (346)
T ss_pred HHHHHHHHHH---HHHcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccC--CCChhhCCHHHHHH
Confidence 4455556655 888999999999999987 5999999999999999999999999999999 55666666666676
Q ss_pred HHHHHHHH-HHHHHHhCCCCCeEEEEecCCCC--CCccceEEEEEEcCC-----CCCCCCC
Q 029617 138 LGHLLCAS-KIVAEKEGILDGFRVVINNGPGA--CQSVYHLHLHVLGGR-----QLKWPPG 190 (190)
Q Consensus 138 L~~ll~~a-k~v~~~~~~~~gyni~in~G~~a--gqsV~HlHlHVIPR~-----~~~wp~~ 190 (190)
|+++++.+ +++-+.++.+.+||+++|+++.. +|.++|||+||+||. +++|.+|
T Consensus 255 La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aG 315 (346)
T PRK11720 255 LALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVG 315 (346)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceee
Confidence 76666543 33333344455799999999864 467999999999983 3555544
No 10
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.91 E-value=1.6e-24 Score=192.44 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHhcCCCCCceeheeccccc--CccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHH
Q 029617 60 NDEEAAAKAAALNAGSEAPTIFDKIIAKEI--PSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDI 137 (190)
Q Consensus 60 ~~e~~~a~~~~~~~~~~~~CiFC~Ii~~e~--p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~ 137 (190)
..|++.++++ ++.++.|+||+|+++|+ +.++|||||+|+||+|++|.+|||+|||||+| +.++.++++++...
T Consensus 180 ~~e~~~~~~y---~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH--~~~~~dl~d~e~~~ 254 (347)
T TIGR00209 180 EREDRLQKEY---FAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAH--VLRITDLTDAQRSD 254 (347)
T ss_pred HHHHHHHHHH---HHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccC--CCChhhCCHHHHHH
Confidence 3445555555 88899999999999987 47999999999999999999999999999999 56666666666777
Q ss_pred HHHHHHHHH-HHHHHhCCCCCeEEEEecCCCCCC--ccceEEEEEEcCC
Q 029617 138 LGHLLCASK-IVAEKEGILDGFRVVINNGPGACQ--SVYHLHLHVLGGR 183 (190)
Q Consensus 138 L~~ll~~ak-~v~~~~~~~~gyni~in~G~~agq--sV~HlHlHVIPR~ 183 (190)
|+.+++.+. ++-+.++.+.+||+++|+++..|+ ..+|||+||+||.
T Consensus 255 La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 255 LALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 776665433 333334445589999999997775 5677999999984
No 11
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.91 E-value=3.9e-24 Score=188.45 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHhcCCCCCceeheecccccC--ccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHH
Q 029617 60 NDEEAAAKAAALNAGSEAPTIFDKIIAKEIP--SSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDI 137 (190)
Q Consensus 60 ~~e~~~a~~~~~~~~~~~~CiFC~Ii~~e~p--~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~ 137 (190)
..|++.++++ ++..+.|+||+|+++|.+ .++|||||+|+||.|++|.+|||+|||||+| +.++.++++++...
T Consensus 170 ~~e~~~~~~y---~~~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH--~~~~~dl~~~e~~~ 244 (329)
T cd00608 170 ARELRNQKAY---YEKHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRH--VSRFTDLTDEERED 244 (329)
T ss_pred HHHHHHHHHH---HHHcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCC--cCChhHCCHHHHHH
Confidence 4555666666 888899999999999877 7999999999999999999999999999999 56666776677777
Q ss_pred HHHHHHHHH-HHHHHhCCCCCeEEEEecCCCC----CCccceEEEEEEcCCC
Q 029617 138 LGHLLCASK-IVAEKEGILDGFRVVINNGPGA----CQSVYHLHLHVLGGRQ 184 (190)
Q Consensus 138 L~~ll~~ak-~v~~~~~~~~gyni~in~G~~a----gqsV~HlHlHVIPR~~ 184 (190)
|+++++.+. ++.+.++...+||+++|+++.. +|.++|+|+||+||+.
T Consensus 245 La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 245 LAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 877776544 3333445357899999999865 4799999999999954
No 12
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.89 E-value=1.3e-22 Score=144.31 Aligned_cols=83 Identities=39% Similarity=0.512 Sum_probs=66.4
Q ss_pred EEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHh---CCCCCeEEEEecCCCCCC
Q 029617 94 VYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKE---GILDGFRVVINNGPGACQ 170 (190)
Q Consensus 94 VyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~---~~~~gyni~in~G~~agq 170 (190)
|||||+++||.|++|.+|||+|||||+| ..++.++++++...+..+ ++++.+++ ...++||+++|+|+.+||
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H--~~~~~~l~~~~~~~l~~~---~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRH--VETLPDLDEALLADLVIT---AQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchh--hCChhHCCHHHHHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 6999999999999999999999999999 455555555544444444 44444432 336899999999999999
Q ss_pred ccceEEEEEEc
Q 029617 171 SVYHLHLHVLG 181 (190)
Q Consensus 171 sV~HlHlHVIP 181 (190)
+++|+|+||||
T Consensus 76 ~v~H~H~hiiP 86 (86)
T cd00468 76 SVPHVHLHVLP 86 (86)
T ss_pred cCCEEEEEeCC
Confidence 99999999998
No 13
>PLN02643 ADP-glucose phosphorylase
Probab=99.88 E-value=2.7e-22 Score=177.54 Aligned_cols=116 Identities=13% Similarity=0.204 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHhcCCCCCceeheecccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHH
Q 029617 60 NDEEAAAKAAALNAGSEAPTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILG 139 (190)
Q Consensus 60 ~~e~~~a~~~~~~~~~~~~CiFC~Ii~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~ 139 (190)
..|++.++++ +++++.|+||+|+++|+ +|||||+|+||.|.+|.+|||+|||||+| ..++.++++++...|+
T Consensus 184 ~~el~~~~~y---~~~~g~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH--~~~~~dl~~~e~~~La 255 (336)
T PLN02643 184 SARLDGSKEY---FEKTGKCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDH--SSNFHEIDDDKAVDLG 255 (336)
T ss_pred HHHHHHHHHH---HHHhCCCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccc--cCChhhCCHHHHHHHH
Confidence 3344555544 88899999999999887 99999999999999999999999999999 5666666667777787
Q ss_pred HHHHH-HHHHHHHhCCCCCeEEEEecCCC--CCC--ccceEEEEEEcCCC
Q 029617 140 HLLCA-SKIVAEKEGILDGFRVVINNGPG--ACQ--SVYHLHLHVLGGRQ 184 (190)
Q Consensus 140 ~ll~~-ak~v~~~~~~~~gyni~in~G~~--agq--sV~HlHlHVIPR~~ 184 (190)
++++. ++++.+.++ .++||+++|+|+. ++| ..+|||+||+||..
T Consensus 256 ~ilk~v~~~l~~~~~-~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~ 304 (336)
T PLN02643 256 GLLKLMLQKISKQLN-DPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLS 304 (336)
T ss_pred HHHHHHHHHHHHhcC-CCCceeeeecCCCccccCcccceEEEEEEecCcC
Confidence 77753 334434445 4599999999986 345 44667779999864
No 14
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.86 E-value=3.9e-22 Score=151.88 Aligned_cols=99 Identities=36% Similarity=0.588 Sum_probs=81.4
Q ss_pred CceeheecccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeec-CCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCC--
Q 029617 78 PTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKF-RDGLTTLAKAEARHGDILGHLLCASKIVAEKEGI-- 154 (190)
Q Consensus 78 ~CiFC~Ii~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKr-H~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~-- 154 (190)
.|+||.|+.++.+.+++||||.+++|.|.+|.++.|+|||||+ | +.++.+++.++.++|.+|...++++++..+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~--i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~ 78 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPH--IRSLRDLTPEHLPLLERMREVARELLKEEYPGD 78 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS---SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCC--CCChHHcCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4999999999999999999999999999999999999999999 7 7888888889999999999999999887642
Q ss_pred --CCCeEEEEecCCCCCCccceEEEEEEcC
Q 029617 155 --LDGFRVVINNGPGACQSVYHLHLHVLGG 182 (190)
Q Consensus 155 --~~gyni~in~G~~agqsV~HlHlHVIPR 182 (190)
...++++++.. +|++|||+|||..
T Consensus 79 ~~~~~~~~gfH~~----PS~~HLHlHvi~~ 104 (116)
T PF11969_consen 79 LDSDDIRLGFHYP----PSVYHLHLHVISP 104 (116)
T ss_dssp -EGGGEEEEEESS-----SSSS-EEEEEET
T ss_pred cchhhhcccccCC----CCcceEEEEEccC
Confidence 34577777654 5999999999974
No 15
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.80 E-value=4.7e-19 Score=137.39 Aligned_cols=94 Identities=28% Similarity=0.408 Sum_probs=76.9
Q ss_pred CccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCC
Q 029617 90 PSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDGFRVVINNGPGAC 169 (190)
Q Consensus 90 p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gyni~in~G~~ag 169 (190)
+..|+|++++.+||.+..|..|||+||+|+|- ...|.|++.+|...|-...+.+.+++++......+++.+++|+.+|
T Consensus 16 ~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~--vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AG 93 (150)
T KOG3379|consen 16 PDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRV--VPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAG 93 (150)
T ss_pred cceEEEeccceEEEEeccccccceEEEecccc--ccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccC
Confidence 37899999999999999999999999999996 4555555555555444455556666777665678999999999999
Q ss_pred CccceEEEEEEcCCCC
Q 029617 170 QSVYHLHLHVLGGRQL 185 (190)
Q Consensus 170 qsV~HlHlHVIPR~~~ 185 (190)
|+|+|+|+||+||+.-
T Consensus 94 QTVpHvHvHIlPR~~g 109 (150)
T KOG3379|consen 94 QTVPHVHVHILPRKAG 109 (150)
T ss_pred cccceeEEEEcccccc
Confidence 9999999999999753
No 16
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.61 E-value=5.3e-15 Score=115.37 Aligned_cols=104 Identities=25% Similarity=0.479 Sum_probs=84.8
Q ss_pred cCCCCCceeheecccccC--ccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHH
Q 029617 73 AGSEAPTIFDKIIAKEIP--SSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAE 150 (190)
Q Consensus 73 ~~~~~~CiFC~Ii~~e~p--~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~ 150 (190)
+.....|.||+|...+.+ .-...|||.+++|.|+.|.+..|.|++||+| +..+.++..++.+++.+++...+.+.+
T Consensus 27 ~~~~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~H--i~~~~~L~k~~V~Lve~m~~~G~~~l~ 104 (166)
T KOG4359|consen 27 PEPKSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKH--IGNCRTLRKDQVELVENMVTVGKTILE 104 (166)
T ss_pred cCCCCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHH--cCChhhcchhhHHHHHHHHHHHHHHHH
Confidence 455778999999875433 4567899999999999999999999999999 777777777888999999999888877
Q ss_pred HhCC--CCCeEEEEecCCCCCCccceEEEEEE
Q 029617 151 KEGI--LDGFRVVINNGPGACQSVYHLHLHVL 180 (190)
Q Consensus 151 ~~~~--~~gyni~in~G~~agqsV~HlHlHVI 180 (190)
.... ++..+++++.-| ..||.|||+|+|
T Consensus 105 r~~~td~~~~r~GFHLPP--f~SV~HLHlH~I 134 (166)
T KOG4359|consen 105 RNNFTDFTNVRMGFHLPP--FCSVSHLHLHVI 134 (166)
T ss_pred HhccCCchheeEeccCCC--cceeeeeeEeee
Confidence 6432 345677777644 689999999988
No 17
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.55 E-value=1.4e-14 Score=116.82 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=62.7
Q ss_pred cCCC-CCceeheecccccC--ccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHH-HHHH
Q 029617 73 AGSE-APTIFDKIIAKEIP--SSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCA-SKIV 148 (190)
Q Consensus 73 ~~~~-~~CiFC~Ii~~e~p--~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~-ak~v 148 (190)
+... +.|+||++++.|.. .++|+|||+|++|.+....+|+.++|+||+| ..+|.++++.+...|+.+++. ++++
T Consensus 8 ~~~~nGs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh--~~~l~~l~~~E~~dlA~~l~~i~~r~ 85 (166)
T PF02744_consen 8 FEGSNGSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRH--VPSLADLTDEERDDLAAILKPILRRY 85 (166)
T ss_dssp HHHH-SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS----SSGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCC--hhhHHHhhhHHHhhHHHHHHHHHHHh
Confidence 4444 99999999987764 6999999999999999999999999999999 566666666667777776653 3333
Q ss_pred HHHhCCCCCeEEEEecCCCCCCccc-eEEEEEEc
Q 029617 149 AEKEGILDGFRVVINNGPGACQSVY-HLHLHVLG 181 (190)
Q Consensus 149 ~~~~~~~~gyni~in~G~~agqsV~-HlHlHVIP 181 (190)
-+..+.+..|++++++.|..+..-. ++|+|+-|
T Consensus 86 d~lf~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 86 DNLFETSFPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp HHHCTS---EEEEEE---SSSS--TT--EEEEE-
T ss_pred cccCCCCCCCchhhhcCCCCcccchhhhhccccc
Confidence 2233335789999999886655432 25555443
No 18
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.47 E-value=1.5e-13 Score=121.39 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=89.6
Q ss_pred chhHHHHHHHHHH-hcCCCCCceeheecccccC--ccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHH
Q 029617 59 TNDEEAAAKAAAL-NAGSEAPTIFDKIIAKEIP--SSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHG 135 (190)
Q Consensus 59 ~~~e~~~a~~~~~-~~~~~~~CiFC~Ii~~e~p--~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~ 135 (190)
.+++++....... +|..++.|.||++++.|.. .++|+|+|++++|.++.+..|.+++|+||+| +..+.++++++.
T Consensus 166 ~P~~v~~e~~~~~~y~~~~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~h--v~~l~~~sdee~ 243 (338)
T COG1085 166 LPLEVARELRSAREYYEENGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEH--VSFLTDLSDEEL 243 (338)
T ss_pred CChHHHHHHHHHHHHHHhcCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHH--hhhhhhCCHHHH
Confidence 3444444444433 5889999999999998876 5999999999999999999999999999999 566666666666
Q ss_pred HHHHHHHHHHHHHHHH----hCCCCCeEEEEecCCCC-CCccceEEEEEEc
Q 029617 136 DILGHLLCASKIVAEK----EGILDGFRVVINNGPGA-CQSVYHLHLHVLG 181 (190)
Q Consensus 136 ~~L~~ll~~ak~v~~~----~~~~~gyni~in~G~~a-gqsV~HlHlHVIP 181 (190)
+.|+.++ +.+... .+....|+++++..+.. .+.-+|+|+|++|
T Consensus 244 ~~lA~il---k~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 244 KDLAEIL---KKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred HHHHHHH---HHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcc
Confidence 6666665 444443 33345699999876543 4567899999999
No 19
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.14 E-value=7.2e-11 Score=102.18 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHhcCCCCCceeheeccccc--CccEEEEcCeEEEEeeCCCCCCeEEEEEeecC-CCCCCchhhhhhHHH
Q 029617 60 NDEEAAAKAAALNAGSEAPTIFDKIIAKEI--PSSIVYEDEKVLAFRDINPQAPVHVLIIPKFR-DGLTTLAKAEARHGD 136 (190)
Q Consensus 60 ~~e~~~a~~~~~~~~~~~~CiFC~Ii~~e~--p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH-~~l~dL~~l~~~~~~ 136 (190)
.+|+..-+++ ++.++.|.+-+.++.|. ..+||.|+|+|+++.++...+|+.+|+|||+| ..+.+|++ .+..
T Consensus 185 s~e~~s~kky---fe~hgk~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~---~~k~ 258 (354)
T KOG2958|consen 185 SQELDSQKKY---FEEHGKCLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDE---VEKV 258 (354)
T ss_pred HHHhhhHHHH---HHHcCCchHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccch---HHHh
Confidence 4444444444 78899999955444332 35899999999999999999999999999999 45555555 4556
Q ss_pred HHHHHHHH-HHHHHHHhCCCCCeEEEEecCCCCC--Cc-cceE-EEEEEcC
Q 029617 137 ILGHLLCA-SKIVAEKEGILDGFRVVINNGPGAC--QS-VYHL-HLHVLGG 182 (190)
Q Consensus 137 ~L~~ll~~-ak~v~~~~~~~~gyni~in~G~~ag--qs-V~Hl-HlHVIPR 182 (190)
.|+.+++. ..++.+.+.-...|+++++..|..+ +. ..|| |+|+.|-
T Consensus 259 dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFypp 309 (354)
T KOG2958|consen 259 DLASILKLLLIKYDNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPP 309 (354)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccccCCcccccccccchhhhhhcccc
Confidence 66666643 3344444433368999999876432 22 2355 9998873
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=98.83 E-value=7.4e-08 Score=74.08 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=69.0
Q ss_pred CCCCCceeheecccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhC
Q 029617 74 GSEAPTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEG 153 (190)
Q Consensus 74 ~~~~~CiFC~Ii~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~ 153 (190)
...++|.||---.+-..-.||.-++++++-++..|..+||+||||-.| ...+..++++..+++..+.+...++.++.|
T Consensus 8 ~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H--~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~ 85 (121)
T PF04677_consen 8 KAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQH--VPSLTELDEEVWEEIRNFQKSLRKMFASQG 85 (121)
T ss_pred CCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecce--ecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 447889999632221225699999999999999999999999999999 344444444555666666666666666655
Q ss_pred CCCCeEEEEecCCCCCCccceEEEEEEcC
Q 029617 154 ILDGFRVVINNGPGACQSVYHLHLHVLGG 182 (190)
Q Consensus 154 ~~~gyni~in~G~~agqsV~HlHlHVIPR 182 (190)
. +. +.+-.. .....|.|+++||-
T Consensus 86 ~--~v-vf~E~~---~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 86 K--DV-VFFERV---RKRNPHTHIQCVPV 108 (121)
T ss_pred C--CE-EEEEEe---CCCCcEEEEEEEEc
Confidence 2 22 222211 34567999999984
No 21
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=98.82 E-value=5.3e-09 Score=84.01 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=65.7
Q ss_pred CccEEEEc-CeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCC
Q 029617 90 PSSIVYED-EKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDGFRVVINNGPGA 168 (190)
Q Consensus 90 p~~IVyEd-e~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gyni~in~G~~a 168 (190)
+.+++.|. |.++++.|.+|++..|+||+||+- .+..|.....++...+.++-.+...+...++..+. ...++.|.++
T Consensus 14 ~e~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s-~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~-~~~f~vG~Ha 91 (184)
T KOG0562|consen 14 PENVYIESPDDVVVIRDKFPKARMHLLVLPRRS-SIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEAL-CNYFRVGFHA 91 (184)
T ss_pred cceeeccCcccEEEEcccCccceeEEEEecccc-hhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhh-hhheeeeecc
Confidence 34566666 899999999999999999999873 46666666666777776666666566665543221 1224455677
Q ss_pred CCccceEEEEEEcCC
Q 029617 169 CQSVYHLHLHVLGGR 183 (190)
Q Consensus 169 gqsV~HlHlHVIPR~ 183 (190)
++|+.++|+|||..+
T Consensus 92 vPSM~~LHLHVISkD 106 (184)
T KOG0562|consen 92 VPSMNNLHLHVISKD 106 (184)
T ss_pred CcchhheeEEEeecc
Confidence 889999999999753
No 22
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=3.5e-05 Score=70.86 Aligned_cols=101 Identities=20% Similarity=0.138 Sum_probs=69.4
Q ss_pred CCCCCceeheecccccCccEEEEcCeEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhC
Q 029617 74 GSEAPTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEG 153 (190)
Q Consensus 74 ~~~~~CiFC~Ii~~e~p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~ 153 (190)
...+.|.||----.-..--||--++++++-++..|.+.+|+||||..| +..+..+.++..+++...-...+++.++.|
T Consensus 316 ~~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H--~p~~~~ls~ev~~Ei~kykaal~~myk~~g 393 (528)
T KOG2476|consen 316 IPPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEH--IPSLVPLSAEVTQEINKYKAALRKMYKKQG 393 (528)
T ss_pred CCCCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEccc--ccccccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 456789999632211123588999999999999999999999999999 555666555666666666656667766665
Q ss_pred CCCCeEEEEecCCCCCCccceEEEEEEcC
Q 029617 154 ILDGFRVVINNGPGACQSVYHLHLHVLGG 182 (190)
Q Consensus 154 ~~~gyni~in~G~~agqsV~HlHlHVIPR 182 (190)
. +..-+-+. .--.-|+|+.+||-
T Consensus 394 ~-~~vvfE~~-----~~rs~Hlq~Qvipv 416 (528)
T KOG2476|consen 394 K-DAVVFERQ-----SYRSVHLQLQVIPV 416 (528)
T ss_pred C-eEEEEEee-----cccceeeEEEEEec
Confidence 2 22212111 11234999999984
No 23
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.66 E-value=0.00016 Score=65.81 Aligned_cols=73 Identities=23% Similarity=0.331 Sum_probs=50.3
Q ss_pred cCeEEEEeeCCCCCCeEEEEEeecCCCCCC-chhhhhhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCccceE
Q 029617 97 DEKVLAFRDINPQAPVHVLIIPKFRDGLTT-LAKAEARHGDILGHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHL 175 (190)
Q Consensus 97 de~~vaf~d~~P~~pgHvLVIPKrH~~l~d-L~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gyni~in~G~~agqsV~Hl 175 (190)
+....++.+.+|..+||+|+||..-..+.. |+. +++..+..++...+ .++|++++|. ..|..+++|+
T Consensus 168 ~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~----------~~l~la~~~a~~~~-~p~frvgYNS-lGA~ASvNHL 235 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDP----------DSFLLALYMAAEAN-NPYFRVGYNS-LGAFATINHL 235 (403)
T ss_pred CCccEEEEeCCCCccCeEEEcCCcccCCCeEecH----------HHHHHHHHHHHhcC-CCcEEEEecC-CccccCccee
Confidence 555688999999999999999887211322 221 23334445555544 4679999986 5556699999
Q ss_pred EEEEEc
Q 029617 176 HLHVLG 181 (190)
Q Consensus 176 HlHVIP 181 (190)
|+|..-
T Consensus 236 HFQa~y 241 (403)
T PLN03103 236 HFQAYY 241 (403)
T ss_pred eeeecc
Confidence 999764
No 24
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0023 Score=55.61 Aligned_cols=89 Identities=25% Similarity=0.432 Sum_probs=64.2
Q ss_pred CccEEEEcCe----EEEEeeC--CCC--CCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHH-hCC-CCCeE
Q 029617 90 PSSIVYEDEK----VLAFRDI--NPQ--APVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEK-EGI-LDGFR 159 (190)
Q Consensus 90 p~~IVyEde~----~vaf~d~--~P~--~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~-~~~-~~gyn 159 (190)
..+|||||.+ |+.+.|. +++ -.-|+|.|-.++ ++..+.|+.+++.+.|..+-..++..... .|. ++-.+
T Consensus 159 ~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~-dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlr 237 (310)
T KOG3969|consen 159 DDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRR-DIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLR 237 (310)
T ss_pred ccceEEecCCCcCCeEEccccccCcccccceeEEEEEecC-CcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEE
Confidence 4689998753 5666655 333 355777777776 67888888888999998888777766544 444 45678
Q ss_pred EEEecCCCCCCccceEEEEEEcCC
Q 029617 160 VVINNGPGACQSVYHLHLHVLGGR 183 (190)
Q Consensus 160 i~in~G~~agqsV~HlHlHVIPR~ 183 (190)
+.+|.- .|.+|+|+||++-+
T Consensus 238 mf~HYq----PSyYHlHVHi~nik 257 (310)
T KOG3969|consen 238 MFFHYQ----PSYYHLHVHIVNIK 257 (310)
T ss_pred EEEEec----CceEEEEEEEEecc
Confidence 888764 57899999999743
No 25
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=96.79 E-value=0.0054 Score=52.73 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=53.6
Q ss_pred ccEEEEcCeEEEEeeCCCCCCeEEEEEeecC-CCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCC--CC-CeEEEEecCC
Q 029617 91 SSIVYEDEKVLAFRDINPQAPVHVLIIPKFR-DGLTTLAKAEARHGDILGHLLCASKIVAEKEGI--LD-GFRVVINNGP 166 (190)
Q Consensus 91 ~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH-~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~--~~-gyni~in~G~ 166 (190)
+..|..+..++++.| +..|.|+|+||... ..+.+-.-+++.....+..--..=.-+.++.|. ++ ..-+.+|.
T Consensus 55 C~~Vd~~~gyvvlKD--~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS-- 130 (252)
T PRK05471 55 CAEVDPQAGYVLLKD--RNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINS-- 130 (252)
T ss_pred CeeEccCCCeEEEec--CCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecC--
Confidence 344555677777884 55899999999997 455554334333334444433332344555653 33 35677775
Q ss_pred CCCCccceEEEEEE
Q 029617 167 GACQSVYHLHLHVL 180 (190)
Q Consensus 167 ~agqsV~HlHlHVI 180 (190)
..|-+-+|||+||=
T Consensus 131 ~~gRSQnQLHIHIs 144 (252)
T PRK05471 131 RYGRTQDQLHIHIS 144 (252)
T ss_pred CCCccccceeeehh
Confidence 45788899999974
No 26
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=96.78 E-value=0.0052 Score=52.75 Aligned_cols=86 Identities=20% Similarity=0.378 Sum_probs=54.7
Q ss_pred ccEEEEcCeEEEEeeCCCCCCeEEEEEeecC-CCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCC--CC-CeEEEEecCC
Q 029617 91 SSIVYEDEKVLAFRDINPQAPVHVLIIPKFR-DGLTTLAKAEARHGDILGHLLCASKIVAEKEGI--LD-GFRVVINNGP 166 (190)
Q Consensus 91 ~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH-~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~--~~-gyni~in~G~ 166 (190)
+..|..+..++++.|. ..|.|+|+||... ..+.+-.-+++.....+..--..=.-+.++.|. +| ..-+.+|.
T Consensus 54 C~~Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS-- 129 (250)
T TIGR00672 54 CAEVKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINS-- 129 (250)
T ss_pred cceEcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecC--
Confidence 3445557788888877 6899999999997 455554334444344554433332334455654 33 35677775
Q ss_pred CCCCccceEEEEEE
Q 029617 167 GACQSVYHLHLHVL 180 (190)
Q Consensus 167 ~agqsV~HlHlHVI 180 (190)
..|-+-+|||+||=
T Consensus 130 ~~gRSQnQLHIHIs 143 (250)
T TIGR00672 130 RTGRSQNHFHIHIS 143 (250)
T ss_pred CCCcccccceeeHh
Confidence 45788899999974
No 27
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=96.43 E-value=0.014 Score=51.78 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=39.6
Q ss_pred EEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCC--Ce-EEEEecCCCCCCccceEEEEEEc
Q 029617 113 HVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILD--GF-RVVINNGPGACQSVYHLHLHVLG 181 (190)
Q Consensus 113 HvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~--gy-ni~in~G~~agqsV~HlHlHVIP 181 (190)
.++|...+| -.+|.+++.+ .+..++...++-.+++.... .| -+..|.|+.+|.|..|-|..|+.
T Consensus 95 eVii~sp~H--~~~l~~~~~~---~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDH--NLTLAEMSVA---EIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcc--cCChhhCCHH---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 566777778 3445554433 34444544444444443222 34 34678899999999999999885
No 28
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.031 Score=52.39 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=59.0
Q ss_pred CCCceeheecccccCccEEEEcCeEEEEeeC-CCCCCeEEEEEeecC-CCCCCchhhhhhHHHHHHHHHHHHHHHHHHhC
Q 029617 76 EAPTIFDKIIAKEIPSSIVYEDEKVLAFRDI-NPQAPVHVLIIPKFR-DGLTTLAKAEARHGDILGHLLCASKIVAEKEG 153 (190)
Q Consensus 76 ~~~CiFC~Ii~~e~p~~IVyEde~~vaf~d~-~P~~pgHvLVIPKrH-~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~ 153 (190)
.++|.||--........||--....++.++. .+...||++|+|-.| ..-..|++. .++++..+....-.+....+
T Consensus 406 lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEd---vWDEIrnfrKcL~~Mfas~n 482 (628)
T KOG2477|consen 406 LDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDED---VWDEIRNFRKCLALMFASMN 482 (628)
T ss_pred hhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchH---HHHHHHHHHHHHHHHHHhcC
Confidence 5789999644433335677666666666554 567899999999999 333445553 33444444433233333444
Q ss_pred CCCCeEEEEecCCCCCCccceEEEEEEcC
Q 029617 154 ILDGFRVVINNGPGACQSVYHLHLHVLGG 182 (190)
Q Consensus 154 ~~~gyni~in~G~~agqsV~HlHlHVIPR 182 (190)
. |- +.+-+.+ .-|.-+|+-+|.||-
T Consensus 483 ~-dv--iFyE~a~-~l~rrpH~~IeCIPv 507 (628)
T KOG2477|consen 483 L-DV--IFYENAP-SLQRRPHTAIECIPV 507 (628)
T ss_pred C-Ce--EEEeccC-ccccCCceeEEEeec
Confidence 2 21 1122222 235589999999995
No 29
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=96.40 E-value=0.0038 Score=55.90 Aligned_cols=72 Identities=29% Similarity=0.396 Sum_probs=43.8
Q ss_pred EcCeEEEEeeCCCCCCeEEEEEeecCCCCC-CchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCccce
Q 029617 96 EDEKVLAFRDINPQAPVHVLIIPKFRDGLT-TLAKAEARHGDILGHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYH 174 (190)
Q Consensus 96 Ede~~vaf~d~~P~~pgHvLVIPKrH~~l~-dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gyni~in~G~~agqsV~H 174 (190)
|+.. ++..+..|...||+||||+--+... .++. + -+..+-.++.... ++-|++++|. ..+..+|.|
T Consensus 165 e~~~-vvaIN~sPie~~H~LiiP~V~kc~pQrit~------~----al~lav~~m~~~d-d~~frlgyNS-lga~AsVNH 231 (431)
T KOG2720|consen 165 ENSP-VVAINVSPIEYGHVLIIPRVLKCLPQRITH------K----ALLLAVTMMAEAD-DPYFRLGYNS-LGAFASVNH 231 (431)
T ss_pred ccCc-eEEEecCccccCcEEEecchhccCcceeeH------H----HHHHHHHHHHhcC-Cchhheeccc-chhhhhhhh
Confidence 3444 6677888999999999998732111 1221 1 1112222333322 3457888776 456689999
Q ss_pred EEEEEE
Q 029617 175 LHLHVL 180 (190)
Q Consensus 175 lHlHVI 180 (190)
||+|.+
T Consensus 232 LHfha~ 237 (431)
T KOG2720|consen 232 LHFHAY 237 (431)
T ss_pred hhhhhh
Confidence 999965
No 30
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=96.35 E-value=0.014 Score=49.49 Aligned_cols=84 Identities=25% Similarity=0.370 Sum_probs=44.2
Q ss_pred EEEEcCeEEEEeeCCCCCCeEEEEEeecC-CCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEecCCCC
Q 029617 93 IVYEDEKVLAFRDINPQAPVHVLIIPKFR-DGLTTLAKAEARHGDILGHLLCASKIVAEKEGIL---DGFRVVINNGPGA 168 (190)
Q Consensus 93 IVyEde~~vaf~d~~P~~pgHvLVIPKrH-~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~---~gyni~in~G~~a 168 (190)
.|-.+..++++.| +..|.|+|+||... ..+.+-.-+++.....++.--..=..+.++.|.+ +.+-+.+|.- .
T Consensus 28 ~Vd~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~--~ 103 (222)
T PF02611_consen 28 QVDLQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQ--Y 103 (222)
T ss_dssp EEETTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-G--G
T ss_pred EEcCCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCc--c
Confidence 3444677777776 55789999999997 4566554444444455554443223345555532 4577888863 4
Q ss_pred CCccceEEEEEE
Q 029617 169 CQSVYHLHLHVL 180 (190)
Q Consensus 169 gqsV~HlHlHVI 180 (190)
|-+-+|||+||=
T Consensus 104 gRsQdQLHIHis 115 (222)
T PF02611_consen 104 GRSQDQLHIHIS 115 (222)
T ss_dssp G-S--S--EEEE
T ss_pred CccccceEeEhh
Confidence 677889999975
No 31
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0034 Score=53.75 Aligned_cols=71 Identities=27% Similarity=0.255 Sum_probs=47.2
Q ss_pred eEEEEeeCCCCCCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCccceEEEE
Q 029617 99 KVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDGFRVVINNGPGACQSVYHLHLH 178 (190)
Q Consensus 99 ~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gyni~in~G~~agqsV~HlHlH 178 (190)
....+++.+|..+.|+|||.++-++-.+ . -.+++++...+ ++.. -+| -+..|.||.+|.|.+|=|+.
T Consensus 93 th~~llNKF~VVdeHlLiVTrefedQ~s--~------LTl~Df~ta~~-vL~~---ldg-lvFYNsGp~aGaSq~HkHLQ 159 (298)
T COG4360 93 THKLLLNKFPVVDEHLLIVTREFEDQES--A------LTLADFTTAYA-VLCG---LDG-LVFYNSGPIAGASQDHKHLQ 159 (298)
T ss_pred hHhhhhhcCCcccceeEEeehhhhhccc--c------CCHHHHHHHHH-HHhc---ccc-eEEecCCCCcCcCCCcccee
Confidence 4456789999999999999998311111 1 12234442222 2222 245 35689999999999999999
Q ss_pred EEcC
Q 029617 179 VLGG 182 (190)
Q Consensus 179 VIPR 182 (190)
++|-
T Consensus 160 i~pm 163 (298)
T COG4360 160 IVPM 163 (298)
T ss_pred Eeec
Confidence 9984
No 32
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=95.71 E-value=0.06 Score=48.24 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=59.9
Q ss_pred CCCCceeheecc---ccc---CccEEEEcCeEEEEeeCCC------------CCCeEEEEE--eecCCCCCCchhhhhhH
Q 029617 75 SEAPTIFDKIIA---KEI---PSSIVYEDEKVLAFRDINP------------QAPVHVLII--PKFRDGLTTLAKAEARH 134 (190)
Q Consensus 75 ~~~~CiFC~Ii~---~e~---p~~IVyEde~~vaf~d~~P------------~~pgHvLVI--PKrH~~l~dL~~l~~~~ 134 (190)
....|+||.--. .+. ..-.+++|+.-.+-.|.-. ..-|+..|| ...| -.+|++++.+
T Consensus 38 ~~~~CpfC~gn~~~t~~~~~~~~~~~~~N~fp~v~~d~p~~~~~~~~~~~~~~~~g~~~VIvesp~H--~~~l~~~~~~- 114 (338)
T COG1085 38 HDPTCPFCPGNERTTEENPRYWHVRVFPNDFPAVSEDPPDAPGSEDPLFKIQEARGKSRVIVESPDH--SKTLPELPVE- 114 (338)
T ss_pred cCCcCCccCCcceecccCCCCcceeecCCcchhhcCCCCCCCccccchhcccccCcceEEEEECCcc--cCccccCCHH-
Confidence 377899996331 111 2346666666555544332 233444444 3446 4455555543
Q ss_pred HHHHHHHHHHHHHHHHHhCCC--CCe-EEEEecCCCCCCccceEEEEEEc
Q 029617 135 GDILGHLLCASKIVAEKEGIL--DGF-RVVINNGPGACQSVYHLHLHVLG 181 (190)
Q Consensus 135 ~~~L~~ll~~ak~v~~~~~~~--~gy-ni~in~G~~agqsV~HlHlHVIP 181 (190)
.+.+++...+...++++.. ..| .+..|.|+..|.|.+|-|..|+.
T Consensus 115 --~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 115 --EIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred --HHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 4445555555555555422 233 56788999999999999999874
No 33
>PLN02643 ADP-glucose phosphorylase
Probab=95.47 E-value=0.091 Score=46.90 Aligned_cols=64 Identities=25% Similarity=0.291 Sum_probs=39.0
Q ss_pred EEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCC--e-EEEEecCCCCCCccceEEEEEEc
Q 029617 113 HVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDG--F-RVVINNGPGACQSVYHLHLHVLG 181 (190)
Q Consensus 113 HvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~g--y-ni~in~G~~agqsV~HlHlHVIP 181 (190)
.++|-.-+| -.+|.+++.+ .+..++.+-++-.++++...+ | .+.-|.|..+|.|.+|-|..|+.
T Consensus 109 eVii~sp~H--~~~l~~~~~~---~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 109 DVVIETPVH--SVQLSDLPAR---HIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEeCCcc--CCChHHCCHH---HHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 455555567 3445555443 344455443443444443333 3 34678899999999999999885
No 34
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=95.01 E-value=0.16 Score=42.77 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=46.4
Q ss_pred EEEEcCeEEEEeeCCCCCCeEEEEEeecC-CCCCCchhhhhhHHHHHHHHHHHHHH-HHHHhCC--CC-CeEEEEecCCC
Q 029617 93 IVYEDEKVLAFRDINPQAPVHVLIIPKFR-DGLTTLAKAEARHGDILGHLLCASKI-VAEKEGI--LD-GFRVVINNGPG 167 (190)
Q Consensus 93 IVyEde~~vaf~d~~P~~pgHvLVIPKrH-~~l~dL~~l~~~~~~~L~~ll~~ak~-v~~~~~~--~~-gyni~in~G~~ 167 (190)
.|-++..++++.|.+ .|...|++|..+ ..+.+---+++.-...+...- .++. +.+++|. +| ...+.+|. .
T Consensus 57 eV~~~AG~av~Kd~~--gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AW-qAR~fms~kyg~~ipd~dvsLaINs--~ 131 (252)
T COG2134 57 EVKPQAGYAVLKDRN--GPLQYLLMPTARITGIESPLLLEPATPNYFYLAW-QARDFMSKKYGNPIPDSDVSLAINS--K 131 (252)
T ss_pred eecCCCceEEEeccC--CCceeEeeeeecccCCcChhhcCCCCccHHHHHH-HHHHHHHHHhCCCCCccceEEEecC--c
Confidence 344455555666655 577889999998 444443223322223333222 2333 4456663 22 34556664 4
Q ss_pred CCCccceEEEEEE
Q 029617 168 ACQSVYHLHLHVL 180 (190)
Q Consensus 168 agqsV~HlHlHVI 180 (190)
-|-+-+|+|+||=
T Consensus 132 ~gRtQdqlHIHIS 144 (252)
T COG2134 132 NGRTQDQLHIHIS 144 (252)
T ss_pred cCccccceEEEEE
Confidence 5778889999975
No 35
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.08 Score=45.59 Aligned_cols=88 Identities=25% Similarity=0.313 Sum_probs=51.9
Q ss_pred cCccEEEEcCeEE----EEeeC--CCC--CCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHH-HHhCC-CCCe
Q 029617 89 IPSSIVYEDEKVL----AFRDI--NPQ--APVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVA-EKEGI-LDGF 158 (190)
Q Consensus 89 ~p~~IVyEde~~v----af~d~--~P~--~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~-~~~~~-~~gy 158 (190)
...+|+|||+... ++.|. ++. ..-|+++|-++. ++..+.|+...++..+..+-....... .+.+. ++..
T Consensus 153 e~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~-diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l 231 (305)
T COG5075 153 ENERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRT-DIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNEL 231 (305)
T ss_pred ccceeEecCcccccCceeccccccCccceeeeeEEEEEecC-CchhhhhCchhhhhHHHhhcccceEecchhcCcChhHe
Confidence 3478999998754 35554 333 345777777764 566666666666665554432211111 12232 3446
Q ss_pred EEEEecCCCCCCccceEEEEEEc
Q 029617 159 RVVINNGPGACQSVYHLHLHVLG 181 (190)
Q Consensus 159 ni~in~G~~agqsV~HlHlHVIP 181 (190)
++.++.. ++.+|+|+||+-
T Consensus 232 ~mfvHY~----PsYyhlHvHI~n 250 (305)
T COG5075 232 RMFVHYQ----PSYYHLHVHIVN 250 (305)
T ss_pred EEEEEec----cceEEEEEEEEe
Confidence 6666653 578999999983
No 36
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=93.37 E-value=0.53 Score=42.23 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=39.7
Q ss_pred eEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCCCCccceEEEEEEc
Q 029617 112 VHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDGF-RVVINNGPGACQSVYHLHLHVLG 181 (190)
Q Consensus 112 gHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gy-ni~in~G~~agqsV~HlHlHVIP 181 (190)
..++|-.-+| -.+|.+++.+ .+..++.+-++-.++++....| .+.-|.|+.+|.|..|-|..|+.
T Consensus 106 ~eViv~sp~H--~~~l~~~~~~---~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDH--SKTLPELSVA---ALREVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCc--CCChhHCCHH---HHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 3566666677 3445555444 3344444434444444322344 34677899999999999999885
No 37
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=92.51 E-value=0.9 Score=40.79 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=37.9
Q ss_pred eEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCeE-EEEecCCCCCCccceEEEEEEc
Q 029617 112 VHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDGFR-VVINNGPGACQSVYHLHLHVLG 181 (190)
Q Consensus 112 gHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gyn-i~in~G~~agqsV~HlHlHVIP 181 (190)
..++|-.-+| -.+|.+++.+++ ..++.+-++-.++++....|- +.-|.|..+|.|.+|-|-.|+.
T Consensus 106 ~eVii~sp~H--~~~l~~m~~~~i---~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 106 SRVICFSPDH--SKTLPELSVAAL---TEIVKTWQEQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEEeCCCc--cCChhHCCHHHH---HHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 3456666667 234555444433 344443333333333223443 4567799999999999999885
No 38
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=62.27 E-value=16 Score=32.52 Aligned_cols=142 Identities=17% Similarity=0.032 Sum_probs=75.5
Q ss_pred ccCCcccceecccccccccccccchhHHHHHHHHHH---hcCCCCCceeheecc---cc-cC---ccEEEEcCeEEEEee
Q 029617 36 TNYNSINFLLPLHSRRSLSRVSVTNDEEAAAKAAAL---NAGSEAPTIFDKIIA---KE-IP---SSIVYEDEKVLAFRD 105 (190)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~~~---~~~~~~~CiFC~Ii~---~e-~p---~~IVyEde~~vaf~d 105 (190)
++-+++.|+.|+.-+=.+++-..+..-++..++.+. +......|+||-=-. |. .| ...|++||.-.+-.|
T Consensus 8 ~~q~~hrRynPltd~wVlvSphRakRPwqg~~e~~~~~~~p~~dp~cplcpG~~ra~g~~np~ydstyvf~NdypA~~~d 87 (354)
T KOG2958|consen 8 FNQHSHRRYNPLTDEWVLVSPHRAKRPWQGQKEPQNKNTTPSYDPLCPLCPGNIRATGFRNPDYDSTYVFDNDYPALRRD 87 (354)
T ss_pred cccCchhccCCccceeEEechhhccCCcccccCccCCCCCCcCCCCCCCCCCcchhccccCCCCccceeccCCchhhccC
Confidence 566667888887666666654333333333222221 223344699994211 21 12 345666665433322
Q ss_pred C--CCC-----------CCeEEEEEeecCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCeEE---EEecCCCCC
Q 029617 106 I--NPQ-----------APVHVLIIPKFRDGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDGFRV---VINNGPGAC 169 (190)
Q Consensus 106 ~--~P~-----------~pgHvLVIPKrH~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gyni---~in~G~~ag 169 (190)
. .+. ..|-+-||--...+=-.|.+++ ...+.+++..=+++..+++..+.|++ .-|.|...|
T Consensus 88 ~p~~~~~~~~~lfk~~~v~G~c~Vicf~Pnh~ltLp~m~---~~~i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mG 164 (354)
T KOG2958|consen 88 QPTQGQDESTGLFKTISVKGVCKVICFSPNHNLTLPLMD---VVEIRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMG 164 (354)
T ss_pred CCCCCCCCCccchhheeecceeEEEEeCCccccccccCC---HHHHHHHHHHHHHHHHHhcccCCcceeeeeccCCcccc
Confidence 1 111 1233444433321011244433 25666777766777777776667765 446688889
Q ss_pred CccceEEEEEE
Q 029617 170 QSVYHLHLHVL 180 (190)
Q Consensus 170 qsV~HlHlHVI 180 (190)
.|.+|-|-.+.
T Consensus 165 cSn~HpHgQ~w 175 (354)
T KOG2958|consen 165 CSNPHPHGQAW 175 (354)
T ss_pred cCCCCccccee
Confidence 99999987643
No 39
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=62.25 E-value=18 Score=29.72 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCC-CCCeEEEEecCCCCCCccceEEEEEE
Q 029617 140 HLLCASKIVAEKEGI-LDGFRVVINNGPGACQSVYHLHLHVL 180 (190)
Q Consensus 140 ~ll~~ak~v~~~~~~-~~gyni~in~G~~agqsV~HlHlHVI 180 (190)
++...+..+++.++. ...|-++.|. .-.|.|+||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~~H~------D~~h~H~Hiv 108 (242)
T PF03432_consen 73 QAHEIAREFAEEMGPGNHQYVVVVHT------DTDHPHVHIV 108 (242)
T ss_pred HHHHHHHHHHHHcCCCCcceEEEECC------CcCeeeeeEE
Confidence 455566778888774 2345555553 2449999977
No 40
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=61.36 E-value=19 Score=29.07 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=19.1
Q ss_pred CeE-EEEecCCCCCCccceEEEEEEc
Q 029617 157 GFR-VVINNGPGACQSVYHLHLHVLG 181 (190)
Q Consensus 157 gyn-i~in~G~~agqsV~HlHlHVIP 181 (190)
.|- +.-|.|..+|.+..|-|-.|+.
T Consensus 153 ~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 153 KYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred ceEEEEEecCCcCCCCCCCCceEEec
Confidence 343 4567799999999999999885
No 41
>PF14317 YcxB: YcxB-like protein
Probab=59.17 E-value=21 Score=22.41 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=18.8
Q ss_pred cEEEEcCeEEEEeeCCCCCCeEEEEEeecC
Q 029617 92 SIVYEDEKVLAFRDINPQAPVHVLIIPKFR 121 (190)
Q Consensus 92 ~IVyEde~~vaf~d~~P~~pgHvLVIPKrH 121 (190)
.-+.|+++.+.+.- .+++.++|||+-
T Consensus 23 ~~v~e~~~~~~l~~----~~~~~~~iPk~~ 48 (62)
T PF14317_consen 23 KKVVETKDYFYLYL----GKNQAFIIPKRA 48 (62)
T ss_pred EEEEEeCCEEEEEE----CCCeEEEEEHHH
Confidence 34677777777643 556889999985
No 42
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=47.41 E-value=54 Score=32.71 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCC-CCeEEEEecCCCCCCccceEEEEEE
Q 029617 141 LLCASKIVAEKEGIL-DGFRVVINNGPGACQSVYHLHLHVL 180 (190)
Q Consensus 141 ll~~ak~v~~~~~~~-~gyni~in~G~~agqsV~HlHlHVI 180 (190)
+...+.++++.+|.. .-|-++.|. .-.|+|+||+
T Consensus 86 ~~~I~~~~~~~LG~~~hQ~Vva~H~------DTdh~HiHIv 120 (746)
T PRK13878 86 LRAIEERICAGLGYGEHQRVSAVHH------DTDNLHIHIA 120 (746)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEEC------CCCCceeEEE
Confidence 344556777887753 346666664 3569999988
No 43
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=38.01 E-value=1.3e+02 Score=24.55 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHH-HhCCCCCeEEEEecCCCCCCccceEEEEEEcCC
Q 029617 139 GHLLCASKIVAE-KEGILDGFRVVINNGPGACQSVYHLHLHVLGGR 183 (190)
Q Consensus 139 ~~ll~~ak~v~~-~~~~~~gyni~in~G~~agqsV~HlHlHVIPR~ 183 (190)
.++++...+.+. ..|...-++.++|.- .+.||+|+.+||..
T Consensus 101 ~~~~~~~~~~~~~r~g~~ni~~a~vH~D----E~tPH~H~~~vP~~ 142 (196)
T PF01076_consen 101 KRWFEDSLEWLQERYGNENIVSAVVHLD----ETTPHMHFDVVPID 142 (196)
T ss_pred HHHHHHHHHHHHHHCCchhEEEEEEECC----CCCcceEEEEeecc
Confidence 344443333333 344223355566653 56899999999964
No 44
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=27.67 E-value=43 Score=20.91 Aligned_cols=13 Identities=54% Similarity=0.887 Sum_probs=11.1
Q ss_pred ccEEEEcCeEEEE
Q 029617 91 SSIVYEDEKVLAF 103 (190)
Q Consensus 91 ~~IVyEde~~vaf 103 (190)
..++|||++++++
T Consensus 57 ~~i~~ed~~~lvv 69 (70)
T cd00165 57 EDIVYEDKKLLVV 69 (70)
T ss_pred cceeeccCCEEEe
Confidence 3899999999875
No 45
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=26.83 E-value=2.6e+02 Score=23.59 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhC---CCCCeEE--EEecCCCCCCccceEEEEEE
Q 029617 136 DILGHLLCASKIVAEKEG---ILDGFRV--VINNGPGACQSVYHLHLHVL 180 (190)
Q Consensus 136 ~~L~~ll~~ak~v~~~~~---~~~gyni--~in~G~~agqsV~HlHlHVI 180 (190)
+.+..|...-+++.+... .-.||-- -+..|. ...-+|-|+||+
T Consensus 40 ~~l~~m~~a~~rl~~~k~~~~~~~G~ir~~EvT~~~--~~g~~HPH~Hvl 87 (233)
T PF01446_consen 40 DTLDHMNKAFRRLFKRKRFKKNVLGYIRSTEVTYNK--ENGSWHPHFHVL 87 (233)
T ss_pred HHHHHHHHHHHHHHhccchhcccceEEEEEEEecCC--CCCeeccceEEE
Confidence 355566655566654211 1235422 122222 123578888876
No 46
>TIGR01363 strep_his_triad streptococcal histidine triad protein. This model represents the N-terminal half of a family of Streptococcal proteins that contain a signal peptide and then up to five repeats of a region that includes a His-X-X-His-X-His (histidine triad) motif. Three repeats are found in the seed alignment. Members of this family from Streptococcus pneumoniae are suggested to cleave human C3, and the member PhpA has been shown in vaccine studies to be a protective antigen in mice.
Probab=25.54 E-value=1.5e+02 Score=26.69 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=15.0
Q ss_pred CCCCccceE-EEEEEcCCCCC
Q 029617 167 GACQSVYHL-HLHVLGGRQLK 186 (190)
Q Consensus 167 ~agqsV~Hl-HlHVIPR~~~~ 186 (190)
..|-.|+|= |+|.||..+|.
T Consensus 321 a~G~vVpHGdHyHyIp~s~Ls 341 (348)
T TIGR01363 321 ARGVAVPHGDHYHFIPYSQMS 341 (348)
T ss_pred CCeEEeecCCeeeecchhhhC
Confidence 346667876 99999987764
No 47
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=25.42 E-value=1.1e+02 Score=22.17 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.0
Q ss_pred ccEEEEcCeEEEEeeCCCCCCeEEEEEeecC
Q 029617 91 SSIVYEDEKVLAFRDINPQAPVHVLIIPKFR 121 (190)
Q Consensus 91 ~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH 121 (190)
+.+|.|+.+.+.+.... +-+.+|||.+
T Consensus 31 GiVv~ET~nt~~I~t~~----~~~~~IpK~~ 57 (92)
T smart00538 31 GIVVDETRNTLKIETKE----GRVKTVPKDG 57 (92)
T ss_pred EEEEEeeeeEEEEEeCC----CcEEEEECCC
Confidence 67999999999998654 5689999998
No 48
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=24.93 E-value=76 Score=21.82 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=9.8
Q ss_pred cCCCCCceehe
Q 029617 73 AGSEAPTIFDK 83 (190)
Q Consensus 73 ~~~~~~CiFC~ 83 (190)
||.-.+|+||.
T Consensus 3 ~d~lKPCPFCG 13 (64)
T PRK09710 3 YDNVKPCPFCG 13 (64)
T ss_pred cccccCCCCCC
Confidence 67889999997
No 49
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=23.28 E-value=68 Score=27.99 Aligned_cols=16 Identities=50% Similarity=0.881 Sum_probs=13.4
Q ss_pred cCccEEEEcCeEEEEe
Q 029617 89 IPSSIVYEDEKVLAFR 104 (190)
Q Consensus 89 ~p~~IVyEde~~vaf~ 104 (190)
.+..||||||+++|+-
T Consensus 76 ~~l~IlyED~~llVvn 91 (289)
T COG0564 76 IPLDILYEDEDLLVVN 91 (289)
T ss_pred CCccEEEecCCEEEEE
Confidence 3457999999999986
No 50
>PRK03879 ribonuclease P protein component 1; Validated
Probab=23.08 E-value=1.3e+02 Score=22.10 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.4
Q ss_pred CccEEEEcCeEEEEeeCCCCCCeEEEEEeecC
Q 029617 90 PSSIVYEDEKVLAFRDINPQAPVHVLIIPKFR 121 (190)
Q Consensus 90 p~~IVyEde~~vaf~d~~P~~pgHvLVIPKrH 121 (190)
.+.+|.|+.+.+.+. ..+-...|||.+
T Consensus 32 ~GiVv~ETknt~~I~-----~~~~~~~VPK~~ 58 (96)
T PRK03879 32 KGRVVDETRNTLVIE-----TDGKEWMVPKDG 58 (96)
T ss_pred eEEEEEeceeEEEEE-----cCCcEEEEeCCC
Confidence 367999999999998 334688999998
No 51
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=21.78 E-value=4.1e+02 Score=21.09 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=38.1
Q ss_pred CeEEEEeeCCCCC----CeEEEEEeecC-CCCCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCcc
Q 029617 98 EKVLAFRDINPQA----PVHVLIIPKFR-DGLTTLAKAEARHGDILGHLLCASKIVAEKEGILDGFRVVINNGPGACQSV 172 (190)
Q Consensus 98 e~~vaf~d~~P~~----pgHvLVIPKrH-~~l~dL~~l~~~~~~~L~~ll~~ak~v~~~~~~~~gyni~in~G~~agqsV 172 (190)
+.+.+..+-+|.. --|++|=.|.. ..-.+=.+++++..+.+.+++. +.....+...+.|-+..| ..+-|||
T Consensus 72 ~d~kIl~NDwPY~~e~~I~HlVVWsK~~L~~d~~~gd~t~~~r~~I~~fv~--~~f~~~~~~~~~v~WF~N--~~~LqSV 147 (158)
T PF12239_consen 72 SDYKILRNDWPYGFEPGIVHLVVWSKFPLPVDPETGDLTPESRELIEDFVQ--RTFVDRLIPEDNVLWFKN--WPSLQSV 147 (158)
T ss_pred CceEEEecCCCcCCCCCceEEEEEecCccccccccccccHHHHHHHHHHHH--HHHHhhcCCCccEEEEeC--chhcCCc
Confidence 3444455666654 46888877775 1111113333333444444432 112222222456666555 3456777
Q ss_pred ceE-EEEEE
Q 029617 173 YHL-HLHVL 180 (190)
Q Consensus 173 ~Hl-HlHVI 180 (190)
.=+ |+||+
T Consensus 148 ~~v~H~HVl 156 (158)
T PF12239_consen 148 RAVEHIHVL 156 (158)
T ss_pred CcceEEEEE
Confidence 643 66655
No 52
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=20.58 E-value=2.1e+02 Score=19.76 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=22.4
Q ss_pred eEEEEeeCCCCCCeEEEEEeecCCCCCCch
Q 029617 99 KVLAFRDINPQAPVHVLIIPKFRDGLTTLA 128 (190)
Q Consensus 99 ~~vaf~d~~P~~pgHvLVIPKrH~~l~dL~ 128 (190)
.+.++.+-.+..+|..++|+++. +.+++
T Consensus 2 ~I~~~rNGD~~~~g~~~~i~~~~--~~sfd 29 (80)
T cd01617 2 RVVVYRNGDPFFKGVRLLVNRRR--FKSFD 29 (80)
T ss_pred EEEEEECCCCCCCCEEEEEChhh--hCCHH
Confidence 46788999999999999999886 44444
Done!