BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029619
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 203 bits (517), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 132/192 (68%), Gaps = 5/192 (2%)
Query: 4 GVRLNAGENIKIEAPKGWSGRFWPRTGCTFDQSGNGKCVTGDCGA-KLNCNGAGGEPPVS 62
G L + + +++ P W+GRFW RTGC+ D SG C T DC + ++ CNG G PP +
Sbjct: 30 GFELASQASFQLDTPVPWNGRFWARTGCSTDASGKFVCATADCASGQVMCNGNGAIPPAT 89
Query: 63 LAEFTLDSP--EDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDT 120
LAEF + + +DFYDVSLVDG+N+PMS+ P GGTG CK+ +C +++N CP +LQ+K +
Sbjct: 90 LAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSELQKKGS 149
Query: 121 -GRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFT 179
G VVAC SAC+ F TP+YCCT P TC PTNYS+IF +CPDAYSYAYDD TFT
Sbjct: 150 DGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFT 209
Query: 180 CKDA-NYTISFC 190
C NY I+FC
Sbjct: 210 CNGGPNYAITFC 221
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 128/192 (66%), Gaps = 5/192 (2%)
Query: 4 GVRLNAGENIKIEAPKGWSGRFWPRTGCTFDQSGNGKCVTGDCGA-KLNCNGAGGEPPVS 62
G L + + ++AP WSGRFW RT C+ D +G C T DCG+ ++ CNGAG PP +
Sbjct: 30 GFELASKASRSVDAPSPWSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPAT 89
Query: 63 LAEFTL--DSPEDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDT 120
L E T+ + +D+YDVSLVDG+N+PMS+ P GGTG CK +C +++N CP LQ K
Sbjct: 90 LVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNKVCPAPLQVKAA 149
Query: 121 -GRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFT 179
G V++CKSAC+AF +YCCT P TC PT YS+IF++ CP AYSYAYDD STFT
Sbjct: 150 DGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFT 209
Query: 180 CKDA-NYTISFC 190
C +Y I+FC
Sbjct: 210 CSGGPDYVITFC 221
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 176 bits (446), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 118/194 (60%), Gaps = 12/194 (6%)
Query: 1 MNGGVRLNAGENIKIEAPKGW-SGRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEP 59
+ GG +LN GE+ +I AP G + R W RTGC FD SG G C TGDCG L C G G
Sbjct: 20 VGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYG-RA 78
Query: 60 PVSLAEFTLDSPE--DFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQ 117
P +LAE+ L DF+D+SL+DG+NVPMS +P GG+G + C D+N +CP +L+Q
Sbjct: 79 PNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQ 138
Query: 118 KDTGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTST 177
C +AC F EYCC G+ N C PTNYS+ FK CPDAYSY DD TST
Sbjct: 139 DGV-----CNNACPVFKKDEYCCVGS--AANDCHPTNYSRYFKGQCPDAYSYPKDDATST 191
Query: 178 FTC-KDANYTISFC 190
FTC NY + FC
Sbjct: 192 FTCPAGTNYKVVFC 205
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 117/192 (60%), Gaps = 17/192 (8%)
Query: 3 GGVRLNAGENIKIEAPKGWSG-RFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPV 61
GG +LN G++ I G +G R W RTGC+FD SG G+C TGDCG L+C A G PP
Sbjct: 21 GGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFDGSGRGRCQTGDCGGVLSCT-AYGNPPN 79
Query: 62 SLAEFTLDSPE--DFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKD 119
+LAEF L+ DF+D+SLVDG+NVPM P+ +GGC+ + C +D+N +CP L+
Sbjct: 80 TLAEFALNQFNNLDFFDISLVDGFNVPMDFSPT--SGGCRGIRCAADINGQCPGALKAPG 137
Query: 120 TGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFT 179
C + C F T +YCC C PT+YS+ FK +CPDAYSY DD T+TFT
Sbjct: 138 -----GCNNPCTVFKTDQYCCNSG-----ACSPTDYSQFFKRNCPDAYSYPKDDQTTTFT 187
Query: 180 CKDA-NYTISFC 190
C NY + FC
Sbjct: 188 CPGGTNYRVVFC 199
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 119/196 (60%), Gaps = 17/196 (8%)
Query: 1 MNGGVRLNAGENIKIEAPKGWS-GRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEP 59
+ GG RLN G+ I AP+G R W RTGC F+ +G G C TGDCG L C G G +P
Sbjct: 20 IGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGTCQTGDCGGVLQCTGWG-KP 78
Query: 60 PVSLAEFTLD--SPEDFYDVSLVDGYNVPMSIIPSGGTGG-CKSVNCVSDLNTKCPEDLQ 116
P +LAE+ LD S DF+D+SLVDG+N+PM+ P+ +GG C +++C +++N +CP L+
Sbjct: 79 PNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKCHAIHCTANINGECPRALK 138
Query: 117 QKDTGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTS 176
C + C F +YCCT GP C PT SK FK+ CPDAYSY DD TS
Sbjct: 139 VPG-----GCNNPCTTFGGQQYCCTQ---GP--CGPTELSKFFKKRCPDAYSYPQDDPTS 188
Query: 177 TFTCK--DANYTISFC 190
TFTC NY + FC
Sbjct: 189 TFTCPGGSTNYRVVFC 204
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 159 bits (402), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 113/192 (58%), Gaps = 19/192 (9%)
Query: 3 GGVRLNAGENIKIEA-PKGWSGRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPV 61
GG RL++G++ I P + R W RT CTFD +G GKC TGDC L C G G PP
Sbjct: 21 GGRRLDSGQSWTITVNPGTTNARIWGRTSCTFDANGRGKCETGDCNGLLECQGYG-SPPN 79
Query: 62 SLAEFTLDSPE--DFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKD 119
+LAEF L+ P D+ D+SLVDG+N+PM GC+ + C D+N +CP +L+
Sbjct: 80 TLAEFALNQPNNLDYIDISLVDGFNIPMDF------SGCRGIQCSVDINGQCPSELKAPG 133
Query: 120 TGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFT 179
C + C F T EYCCT GP +C PT YSK FK+ CPDAYSY DD TS FT
Sbjct: 134 -----GCNNPCTVFKTNEYCCTD---GPGSCGPTTYSKFFKDRCPDAYSYPQDDKTSLFT 185
Query: 180 CKD-ANYTISFC 190
C NY ++FC
Sbjct: 186 CPSGTNYKVTFC 197
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 120/196 (61%), Gaps = 17/196 (8%)
Query: 1 MNGGVRLNAGENIKIEAPKGWS-GRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEP 59
+ GG RL+ G+ I AP+G R W RT C F+ +G G C TGDCG L C G G +P
Sbjct: 20 IGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGTCQTGDCGGVLQCTGWG-KP 78
Query: 60 PVSLAEFTLD--SPEDFYDVSLVDGYNVPMSIIPSGGTGG-CKSVNCVSDLNTKCPEDLQ 116
P +LAE+ LD S DF+D+SLVDG+N+PM+ P+ +GG C +++C +++N +CP +L+
Sbjct: 79 PNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPRELR 138
Query: 117 QKDTGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTS 176
C + C F +YCCT GP C PT +SK FK+ CPDAYSY DD TS
Sbjct: 139 VPG-----GCNNPCTTFGGQQYCCTQ---GP--CGPTFFSKFFKQRCPDAYSYPQDDPTS 188
Query: 177 TFTCK--DANYTISFC 190
TFTC NY + FC
Sbjct: 189 TFTCPGGSTNYRVIFC 204
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 113/196 (57%), Gaps = 17/196 (8%)
Query: 1 MNGGVRLNAGENIKIEAPKGWS-GRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEP 59
+ GG RL G++ AP G R W RT C FD +G G C TGDCG L C G G +P
Sbjct: 21 VGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKGWG-KP 79
Query: 60 PVSLAEFTLD--SPEDFYDVSLVDGYNVPMSIIPSG-GTGGCKSVNCVSDLNTKCPEDLQ 116
P +LAE+ L+ S DF+D+S++DG+N+PMS P+ G G C + C +++N +CP L+
Sbjct: 80 PNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGKCHGIQCTANINGECPGSLR 139
Query: 117 QKDTGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTS 176
C + C F +YCCT GP C PT S+ FK+ CPDAYSY DD TS
Sbjct: 140 VPG-----GCNNPCTTFGGQQYCCTQ---GP--CGPTELSRWFKQRCPDAYSYPQDDPTS 189
Query: 177 TFTCKD--ANYTISFC 190
TFTC +Y + FC
Sbjct: 190 TFTCTSWTTDYKVMFC 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 143 bits (360), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 109/190 (57%), Gaps = 14/190 (7%)
Query: 3 GGVRLNAGENIKIEAPKGWSG-RFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPV 61
GG +LN+GE+ I G +G + W RT C FD SG+G C TGDCG L C G PP
Sbjct: 27 GGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCK-RFGRPPT 85
Query: 62 SLAEFTLDS-PEDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDT 120
+LAEF+L+ +D+ D+S + G+NVPM+ P+ T GC+ V C +D+ +CP L+
Sbjct: 86 TLAEFSLNQYGKDYIDISNIKGFNVPMNFSPT--TRGCRGVRCAADIVGQCPAKLKAPGG 143
Query: 121 GRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFTC 180
G C AC F T EYCCT C PT YS+ FK CPDA+SY D T+
Sbjct: 144 G----CNDACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCP 194
Query: 181 KDANYTISFC 190
+NY ++FC
Sbjct: 195 GSSNYRVTFC 204
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 143 bits (360), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 109/190 (57%), Gaps = 14/190 (7%)
Query: 3 GGVRLNAGENIKIEAPKGWSG-RFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPV 61
GG +LN+GE+ I G +G + W RT C FD SG+G C TGDCG L C G PP
Sbjct: 27 GGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCK-RFGRPPT 85
Query: 62 SLAEFTLDS-PEDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDT 120
+LAEF+L+ +D+ D+S + G+NVPM+ P+ T GC+ V C +D+ +CP L+
Sbjct: 86 TLAEFSLNQYGKDYIDISNIKGFNVPMNFSPT--TRGCRGVRCAADIVGQCPAKLKAPGG 143
Query: 121 GRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFTC 180
G C AC F T EYCCT C PT YS+ FK CPDA+SY D T+
Sbjct: 144 G----CNDACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCP 194
Query: 181 KDANYTISFC 190
+NY ++FC
Sbjct: 195 GSSNYRVTFC 204
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 142 bits (359), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 106/190 (55%), Gaps = 14/190 (7%)
Query: 3 GGVRLNAGENIKIEAPKGWSG-RFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPV 61
GG +LN+GE+ I G G + W RT C FD SG G C TGDCG L C G PP
Sbjct: 27 GGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGRGICRTGDCGGLLQCK-RFGRPPT 85
Query: 62 SLAEFTLDS-PEDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDT 120
+LAEF+L+ +D+ D+S + G+NVPM P+ T GC+ V C +D+ +CP L+
Sbjct: 86 TLAEFSLNQYGKDYIDISNIKGFNVPMDFSPT--TRGCRGVRCAADIVGQCPAKLKAPGG 143
Query: 121 GRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFTC 180
G C AC F T EYCCT C PT YS+ FK CPDA+SY D T+
Sbjct: 144 G----CNDACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCP 194
Query: 181 KDANYTISFC 190
+NY ++FC
Sbjct: 195 GSSNYRVTFC 204
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 142 bits (359), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 108/190 (56%), Gaps = 14/190 (7%)
Query: 3 GGVRLNAGENIKIEAPKGWSG-RFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPV 61
GG +LN+GE+ I G +G + W RT C FD SG+G C TGDCG L C G PP
Sbjct: 27 GGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCK-RFGRPPT 85
Query: 62 SLAEFTLDS-PEDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDT 120
+LAEF+L+ +D+ D+S + G+NVPM P+ T GC+ V C +D+ +CP L+
Sbjct: 86 TLAEFSLNQYGKDYIDISNIKGFNVPMDFSPT--TRGCRGVRCAADIVGQCPAKLKAPGG 143
Query: 121 GRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFTC 180
G C AC F T EYCCT C PT YS+ FK CPDA+SY D T+
Sbjct: 144 G----CNDACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCP 194
Query: 181 KDANYTISFC 190
+NY ++FC
Sbjct: 195 GSSNYRVTFC 204
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 142 bits (359), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 107/190 (56%), Gaps = 14/190 (7%)
Query: 3 GGVRLNAGENIKIEAPKGWSG-RFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPV 61
GG +LN+GE+ I G G + W RT C FD SG+G C TGDCG L C G PP
Sbjct: 27 GGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGSGICKTGDCGGLLRCK-RFGRPPT 85
Query: 62 SLAEFTLDS-PEDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDT 120
+LAEF+L+ +D+ D+S + G+NVPM P+ T GC+ V C +D+ +CP L+
Sbjct: 86 TLAEFSLNQYGKDYIDISNIKGFNVPMDFSPT--TRGCRGVRCAADIVGQCPAKLKAPGG 143
Query: 121 GRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFTC 180
G C AC F T EYCCT C PT YS+ FK CPDA+SY D T+
Sbjct: 144 G----CNDACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCP 194
Query: 181 KDANYTISFC 190
+NY ++FC
Sbjct: 195 GSSNYRVTFC 204
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 108/190 (56%), Gaps = 14/190 (7%)
Query: 3 GGVRLNAGENIKIEAPKGWSG-RFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPV 61
GG +LN+GE+ I G +G + W RT C FD SG+G C TGDCG L C G PP
Sbjct: 27 GGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDSGSGICKTGDCGGLLRCKRF-GRPPT 85
Query: 62 SLAEFTLDSP-EDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDT 120
+LAEF+L+ +D+ D+S + G+NVPM+ P+ T GC+ V C +D+ +CP L+
Sbjct: 86 TLAEFSLNQXGKDYIDISNIKGFNVPMNFSPT--TRGCRGVRCAADIVGQCPAKLKAPGG 143
Query: 121 GRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFTC 180
G C AC F T EYCCT C PT S+ FK CPDA+SY D T+
Sbjct: 144 G----CNDACTVFQTSEYCCT-----TGKCGPTEXSRFFKRLCPDAFSYVLDKPTTVTCP 194
Query: 181 KDANYTISFC 190
+NY ++FC
Sbjct: 195 GSSNYRVTFC 204
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 107/190 (56%), Gaps = 14/190 (7%)
Query: 3 GGVRLNAGENIKIEAPKGWSG-RFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPV 61
GG +LN+GE+ I G +G + W RT C FD SG+G C TGDCG L C G PP
Sbjct: 27 GGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDSGSGICKTGDCGGLLRCK-RFGRPPT 85
Query: 62 SLAEFTLDSP-EDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDT 120
+LAEF+L+ +D D+S + G+NVPM+ P+ T GC+ V C +D+ +CP L+
Sbjct: 86 TLAEFSLNQXGKDXIDISNIKGFNVPMNFSPT--TRGCRGVRCAADIVGQCPAKLKAPGG 143
Query: 121 GRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIFKESCPDAYSYAYDDLTSTFTC 180
G C AC F T EYCCT C PT S+ FK CPDA+SY D T+
Sbjct: 144 G----CNDACTVFQTSEYCCT-----TGKCGPTEXSRFFKRLCPDAFSYVLDKPTTVTCP 194
Query: 181 KDANYTISFC 190
+NY ++FC
Sbjct: 195 GSSNYRVTFC 204
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 3 GGVRLNAGENIKIEAPKGWSGRFWPRTGCTFDQSGNGKCVTGDC-GAKLNCNGAGGEP-- 59
GG L+ G + ++ P S W RTGC+FD++G G+C TGDC G+ L C GG P
Sbjct: 26 GGTELHPGASWSLDTPVIGSQYIWGRTGCSFDRAGKGRCQTGDCGGSSLTC---GGNPAV 82
Query: 60 PVSLAEFTLDSPEDFYDV-SLVDGYNVPMSIIPSGG 94
P ++AE ++ Y V S + G+NVPM++ S G
Sbjct: 83 PTTMAEVSVLQGNYTYGVTSTLKGFNVPMNLKCSSG 118
>pdb|4DSD|A Chain A, Crystal Structure Of A Putative Periplasmic Protein
(Bacova_05534) From Bacteroides Ovatus Atcc 8483 At 1.75
A Resolution
pdb|4DSD|B Chain B, Crystal Structure Of A Putative Periplasmic Protein
(Bacova_05534) From Bacteroides Ovatus Atcc 8483 At 1.75
A Resolution
Length = 129
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 65 EFTLDSPEDFYDVSLVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQ 116
E DS ++ +VS G VP+SI+P K+ N V++ TK D +
Sbjct: 53 EIDFDSKGNWEEVSAKKGQTVPVSIVPGFAVNYLKAHNFVNEGVTKVERDRK 104
>pdb|1KKO|A Chain A, Crystal Structure Of Citrobacter Amalonaticus
Methylaspartate Ammonia Lyase
pdb|1KKO|B Chain B, Crystal Structure Of Citrobacter Amalonaticus
Methylaspartate Ammonia Lyase
pdb|1KKR|A Chain A, Crystal Structure Of Citrobacter Amalonaticus
Methylaspartate Ammonia Lyase Containing
(2s,3s)-3-Methylaspartic Acid
pdb|1KKR|B Chain B, Crystal Structure Of Citrobacter Amalonaticus
Methylaspartate Ammonia Lyase Containing
(2s,3s)-3-Methylaspartic Acid
Length = 413
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 38 NGKCVTGDCGAKLNCNGAGGEPPVSLAE 65
NG GDC A + +GAGG P+ LAE
Sbjct: 61 NGAVAVGDCAA-VQYSGAGGRDPLFLAE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,988,556
Number of Sequences: 62578
Number of extensions: 331502
Number of successful extensions: 782
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 27
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)