Query 029619
Match_columns 190
No_of_seqs 122 out of 718
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 15:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 2.5E-78 5.3E-83 507.6 16.0 189 2-190 27-219 (219)
2 smart00205 THN Thaumatin famil 100.0 1.3E-75 2.8E-80 491.1 15.6 189 2-190 25-217 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 3.2E-74 7E-79 484.5 14.8 185 2-190 29-228 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.2E-73 2.7E-78 478.4 5.3 188 2-190 22-212 (213)
5 cd09215 Thaumatin-like the swe 100.0 1.6E-51 3.5E-56 330.1 12.3 129 2-190 25-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 1.2E-44 2.5E-49 289.0 12.0 129 2-190 19-150 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 6.9E-43 1.5E-47 279.3 11.5 125 2-189 26-153 (153)
8 cd09216 GH64-LPHase-like glyco 95.1 0.038 8.1E-07 50.1 5.2 78 8-93 60-143 (353)
9 cd09220 GH64-GluB-like glycosi 94.7 0.072 1.6E-06 48.5 5.9 78 9-92 62-145 (369)
10 PF04681 Bys1: Blastomyces yea 93.8 0.12 2.7E-06 41.7 5.0 45 59-105 72-121 (155)
11 cd09214 GH64-like glycosyl hyd 80.6 1.2 2.6E-05 39.9 2.3 32 62-93 124-155 (319)
12 cd09214 GH64-like glycosyl hyd 64.7 4.7 0.0001 36.1 2.2 23 152-174 275-299 (319)
13 PHA03094 dUTPase; Provisional 64.3 9.1 0.0002 30.2 3.5 30 4-33 35-70 (144)
14 PF11142 DUF2917: Protein of u 59.0 12 0.00026 25.5 2.9 23 5-27 2-29 (63)
15 cd09220 GH64-GluB-like glycosi 55.5 9.5 0.00021 34.9 2.5 24 151-174 319-344 (369)
16 cd09216 GH64-LPHase-like glyco 46.6 9.1 0.0002 34.8 0.9 22 153-174 310-333 (353)
17 cd07557 trimeric_dUTPase Trime 46.6 32 0.0007 24.1 3.7 29 4-32 13-47 (92)
18 PF05726 Pirin_C: Pirin C-term 37.8 36 0.00079 24.9 2.9 26 5-30 4-29 (104)
19 PLN02547 dUTP pyrophosphatase 37.4 46 0.001 26.6 3.6 29 4-32 46-80 (157)
20 PHA02703 ORF007 dUTPase; Provi 35.7 47 0.001 26.9 3.4 30 4-33 43-78 (165)
21 PRK00601 dut deoxyuridine 5'-t 34.9 59 0.0013 25.7 3.8 29 4-32 39-73 (150)
22 TIGR00576 dut deoxyuridine 5'- 30.7 68 0.0015 25.0 3.5 29 4-32 30-64 (141)
23 TIGR02274 dCTP_deam deoxycytid 30.3 83 0.0018 25.4 4.1 29 3-31 69-103 (179)
24 PF00947 Pico_P2A: Picornaviru 28.6 17 0.00036 28.6 -0.3 17 37-53 83-99 (127)
25 PRK13956 dut deoxyuridine 5'-t 28.3 76 0.0017 25.2 3.4 29 4-32 36-70 (147)
26 PF05991 NYN_YacP: YacP-like N 26.6 21 0.00046 28.6 -0.1 10 79-88 2-11 (166)
27 PRK02253 deoxyuridine 5'-triph 26.6 92 0.002 24.9 3.7 29 3-31 70-103 (167)
28 PHA01707 dut 2'-deoxyuridine 5 26.2 98 0.0021 24.7 3.7 28 3-30 53-86 (158)
29 PRK00416 dcd deoxycytidine tri 24.2 1.2E+02 0.0025 24.5 3.9 28 3-30 69-102 (177)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=2.5e-78 Score=507.61 Aligned_cols=189 Identities=68% Similarity=1.368 Sum_probs=182.1
Q ss_pred CCCeEeCCCCeEEEecCCCceeeeeeccCCCCCCCCCccccccCCCCcccCCCCCCCCCcceeEEeeCCC--Cccccccc
Q 029619 2 NGGVRLNAGENIKIEAPKGWSGRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPVSLAEFTLDSP--EDFYDVSL 79 (190)
Q Consensus 2 ~~G~~L~pg~s~~~~vp~~WsGriWaRtgCs~~~~g~~~C~TGdC~g~~~C~~~~~~~p~TlaEftl~~~--~d~YdvSl 79 (190)
++||+|+||++++|+||+.|+|||||||+|++|+.|+++|+||||++.|+|++.+++||+|||||+|+.. +|||||||
T Consensus 27 ~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g~~g~pP~TlaEftl~~~~~~d~YdvSl 106 (219)
T cd09218 27 GGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCGGGLECNGAGGAPPATLAEFTLGGSGGQDFYDVSL 106 (219)
T ss_pred CCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCCCeeecCCCCCCCCceeEEEEeccCCCCcceeeee
Confidence 4899999999999999999999999999999999999999999999999999888899999999999864 89999999
Q ss_pred cccccCceeEeecCCCCCCccccccccCccCCCCCccccc-cCceeccchhhhhcCCCccccCCCCCCCCCCCCCcchhH
Q 029619 80 VDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKD-TGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKI 158 (190)
Q Consensus 80 VdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~~~~-~g~~v~C~SaC~~~~~~~~CC~g~~~~~~~C~pt~ys~~ 158 (190)
||||||||+|+|+++...|+..+|.+|||+.||.||||++ +|+||||||||++|++|||||+|+|.+|++|+|+.||++
T Consensus 107 VdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~~f~~~~~CC~g~~~~p~~C~pt~ys~~ 186 (219)
T cd09218 107 VDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSACLAFNTDEYCCRGAYGTPETCKPTTYSRL 186 (219)
T ss_pred eccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHHHhhCCccceecCCCCCCCcCCCcchhHH
Confidence 9999999999998766689999999999999999999997 789999999999999999999999999999999999999
Q ss_pred HhhcCCCccccccCCCCCceee-cCCCeEEEeC
Q 029619 159 FKESCPDAYSYAYDDLTSTFTC-KDANYTISFC 190 (190)
Q Consensus 159 fK~~CP~AYsy~~Dd~ts~ftC-~~~~y~vtFC 190 (190)
||++||+||+|||||++++|+| ++++|+|+||
T Consensus 187 FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 187 FKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999999999999999 5799999999
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=1.3e-75 Score=491.10 Aligned_cols=189 Identities=60% Similarity=1.231 Sum_probs=181.4
Q ss_pred CCCeEeCCCCeEEEecCCCce-eeeeeccCCCCCCCCCccccccCCCCcccCCCCCCCCCcceeEEeeCCC--Ccccccc
Q 029619 2 NGGVRLNAGENIKIEAPKGWS-GRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPVSLAEFTLDSP--EDFYDVS 78 (190)
Q Consensus 2 ~~G~~L~pg~s~~~~vp~~Ws-GriWaRtgCs~~~~g~~~C~TGdC~g~~~C~~~~~~~p~TlaEftl~~~--~d~YdvS 78 (190)
++||+|+||++++|.||++|+ |||||||+|++++.|++.|+||||+|.|+|++.+++||+|||||+|+.. +||||||
T Consensus 25 ~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~gg~pP~TlaEftl~~~~~~d~YdvS 104 (218)
T smart00205 25 GGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGWGGRPPATLAEFALNQFGGLDFYDVS 104 (218)
T ss_pred CCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCCCCCCCcceeEEEecCCCCcceeeeE
Confidence 589999999999999999995 9999999999999999999999999999999888899999999999764 8999999
Q ss_pred ccccccCceeEeecCCCCCCccccccccCccCCCCCccccccCceeccchhhhhcCCCccccCCCCCCCCCCCCCcchhH
Q 029619 79 LVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDTGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKI 158 (190)
Q Consensus 79 lVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~~~~~g~~v~C~SaC~~~~~~~~CC~g~~~~~~~C~pt~ys~~ 158 (190)
|||||||||+|.|+++...|+..+|.+|||..||.+|+++++|.||||||||++|++|||||+|+|++|++|+|+.||++
T Consensus 105 lVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f~~~~yCC~g~~~~~~~C~pt~ys~~ 184 (218)
T smart00205 105 LVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTVFGTDQYCCTGGQNNPETCPPTNYSRI 184 (218)
T ss_pred eeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhccCCCcceecCCCCCCCCCCCcchhhH
Confidence 99999999999998766679999999999999999999987789999999999999999999999999999999999999
Q ss_pred HhhcCCCccccccCCCCCceee-cCCCeEEEeC
Q 029619 159 FKESCPDAYSYAYDDLTSTFTC-KDANYTISFC 190 (190)
Q Consensus 159 fK~~CP~AYsy~~Dd~ts~ftC-~~~~y~vtFC 190 (190)
||++||+||+||+||++++|+| ++++|+|+||
T Consensus 185 FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FC 217 (218)
T smart00205 185 FKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFC 217 (218)
T ss_pred HhhhCCccccCccCCCCcceEccCCCCEEEEeC
Confidence 9999999999999999999999 6699999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=3.2e-74 Score=484.49 Aligned_cols=185 Identities=43% Similarity=0.902 Sum_probs=173.0
Q ss_pred CCCeEeCCCCeEEEecCCCce-eeeeeccCCCCC-CCCCccccccCCCCcccCCCCCCCCCcceeEEeeCCC-Ccccccc
Q 029619 2 NGGVRLNAGENIKIEAPKGWS-GRFWPRTGCTFD-QSGNGKCVTGDCGAKLNCNGAGGEPPVSLAEFTLDSP-EDFYDVS 78 (190)
Q Consensus 2 ~~G~~L~pg~s~~~~vp~~Ws-GriWaRtgCs~~-~~g~~~C~TGdC~g~~~C~~~~~~~p~TlaEftl~~~-~d~YdvS 78 (190)
++||+|+||++++|.||++|+ |||||||+|++| ..|+++|+||||+|.|+|+ .++.||+|||||+|+.. +||||||
T Consensus 29 ~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~C~-~~g~pP~TlaEftL~~~~~D~YdVS 107 (229)
T cd09219 29 ATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLTCE-NSDQPPASLAEFTLIGGKEDNYDIS 107 (229)
T ss_pred CCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceeecC-CCCCCCcceeeEEecCCCCceeEEE
Confidence 489999999999999999997 999999999999 4699999999999999999 45689999999999875 8999999
Q ss_pred ccccccCceeEeecCCCCCCccccccccCccCCCCCccccc--cCceeccchhhhh-cCC--CccccCCCCCCCCCCCC-
Q 029619 79 LVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKD--TGRVVACKSACMA-FNT--PEYCCTGAFGGPNTCKP- 152 (190)
Q Consensus 79 lVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~~~~--~g~~v~C~SaC~~-~~~--~~~CC~g~~~~~~~C~p- 152 (190)
|||||||||+|.|.. .|+..+|.+|||..||.|||++. +|++|||||||++ |+. |||||+|+|++|++|+|
T Consensus 108 lVDGfNlP~~i~P~~---~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~SaC~a~~~~~~~~yCC~g~~~~p~~C~p~ 184 (229)
T cd09219 108 LVDGFNIPLNITNNI---TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGCISPCNRDKNHDDSPSCCTGSHNKPETCPQS 184 (229)
T ss_pred EecccccceEeccCC---CCCCCcccCCCcccCCHHHccccCCCCccceecCHhhhhccCCCCcccccCCCCCcCCCCCC
Confidence 999999999999932 69999999999999999999973 7889999999999 655 99999999999999999
Q ss_pred -CcchhHHhhcCCCccccccCCCC--Cceeec---CCCeEEEeC
Q 029619 153 -TNYSKIFKESCPDAYSYAYDDLT--STFTCK---DANYTISFC 190 (190)
Q Consensus 153 -t~ys~~fK~~CP~AYsy~~Dd~t--s~ftC~---~~~y~vtFC 190 (190)
++||++||++||+||||||||++ ++|+|. +++|+|+||
T Consensus 185 ~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFC 228 (229)
T cd09219 185 GVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFC 228 (229)
T ss_pred cccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeC
Confidence 88999999999999999999999 779994 599999999
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.2e-73 Score=478.40 Aligned_cols=188 Identities=63% Similarity=1.286 Sum_probs=155.3
Q ss_pred CCCeEeCCCCeEEEecCCCceeeeeeccCCCCCCCCCccccccCCCCcccCCCCCCCCCcceeEEeeCCC--Cccccccc
Q 029619 2 NGGVRLNAGENIKIEAPKGWSGRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPVSLAEFTLDSP--EDFYDVSL 79 (190)
Q Consensus 2 ~~G~~L~pg~s~~~~vp~~WsGriWaRtgCs~~~~g~~~C~TGdC~g~~~C~~~~~~~p~TlaEftl~~~--~d~YdvSl 79 (190)
++||+|+||++++|.||++|+|||||||+|+++..|+++|+||||+|+++|++.++++|+|||||+|+.. +|||||||
T Consensus 22 ~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~P~TlaEftl~~~~~~d~YDVSl 101 (213)
T PF00314_consen 22 TGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSPPATLAEFTLNGSNGQDFYDVSL 101 (213)
T ss_dssp EEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----SS--EEEEEEEETTTEEEEEEES
T ss_pred CCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCCcccccccccCcccceeEEEEeccCCCcceEEEEe
Confidence 4799999999999999999999999999999999999999999999999999877889999999999633 99999999
Q ss_pred cccccCceeEeecCCCCCCccccccccCccCCCCCccccccCceeccchhhhhcCCCccccCCCCCCCCCCCCCcchhHH
Q 029619 80 VDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDTGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIF 159 (190)
Q Consensus 80 VdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~~~~~g~~v~C~SaC~~~~~~~~CC~g~~~~~~~C~pt~ys~~f 159 (190)
||||||||+|+|.+ ...|+..+|.+||+..||.|||++..+++|+|+|+|.+++++|+||+|+|..+++|++++|+++|
T Consensus 102 VdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~~CC~g~~~~~~~C~~~~ys~~f 180 (213)
T PF00314_consen 102 VDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDEYCCRGAYNTPDTCPPTNYSQFF 180 (213)
T ss_dssp TT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHHHHTTCCS-TTSCS---HHHHHH
T ss_pred eeeecCChhhccCC-CCccccccCccccccccchhheeeccCceeeecccceeccCCccccccccCCCcccccchhhhhh
Confidence 99999999999995 56899999999999999999999885559999999999999999999999999999999999999
Q ss_pred hhcCCCccccccCCCCCceee-cCCCeEEEeC
Q 029619 160 KESCPDAYSYAYDDLTSTFTC-KDANYTISFC 190 (190)
Q Consensus 160 K~~CP~AYsy~~Dd~ts~ftC-~~~~y~vtFC 190 (190)
|++||+||+|||||++|+|+| ++++|+||||
T Consensus 181 K~~CP~AYsya~DD~~s~ftC~~~~~y~ItFC 212 (213)
T PF00314_consen 181 KKACPDAYSYAYDDQTSTFTCPAGTNYTITFC 212 (213)
T ss_dssp HHH-TTSBSSTTSHTTT-EEEETT-EEEEEES
T ss_pred hhhCcccccccccCCCcceECCCCCCEEEEeC
Confidence 999999999999999999999 6799999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=1.6e-51 Score=330.06 Aligned_cols=129 Identities=57% Similarity=1.182 Sum_probs=116.2
Q ss_pred CCCeEeCCCCeEEEecCCCceeeeeeccCCCCCC-CCCccccccCCCCcccCCCCCCCCCcceeEEeeCCC--Ccccccc
Q 029619 2 NGGVRLNAGENIKIEAPKGWSGRFWPRTGCTFDQ-SGNGKCVTGDCGAKLNCNGAGGEPPVSLAEFTLDSP--EDFYDVS 78 (190)
Q Consensus 2 ~~G~~L~pg~s~~~~vp~~WsGriWaRtgCs~~~-~g~~~C~TGdC~g~~~C~~~~~~~p~TlaEftl~~~--~d~YdvS 78 (190)
++||+|+||++++|.||++|+|||||||+|++++ .|++.|+||||++.++|++ ++.||+|||||+|+.. +||||||
T Consensus 25 ~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g-~g~pp~TlaEftl~~~~~~d~YdVS 103 (157)
T cd09215 25 TGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCNGGLNCQG-TGGPPATLAEFTLSGGGGLDYYDIS 103 (157)
T ss_pred CCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCCceeecCC-CCCCCcceEEEEecCCCCcceeEEE
Confidence 5899999999999999999999999999999998 7999999999999999998 5679999999999864 7999999
Q ss_pred ccccccCceeEeecCCCCCCccccccccCccCCCCCccccccCceeccchhhhhcCCCccccCCCCCCCCCCCCCcchhH
Q 029619 79 LVDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDTGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKI 158 (190)
Q Consensus 79 lVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~~~~~g~~v~C~SaC~~~~~~~~CC~g~~~~~~~C~pt~ys~~ 158 (190)
|||||||||+|+|+. +.|+..+|.+
T Consensus 104 lVdG~NlP~~i~P~~--~~C~~~~C~~----------------------------------------------------- 128 (157)
T cd09215 104 LVDGYNLPMSITPQP--GECPTPICAA----------------------------------------------------- 128 (157)
T ss_pred eeccccCCEEEecCC--CCCCCCcccc-----------------------------------------------------
Confidence 999999999999974 2354333331
Q ss_pred HhhcCCCccccccCCCCCceee-cCCCeEEEeC
Q 029619 159 FKESCPDAYSYAYDDLTSTFTC-KDANYTISFC 190 (190)
Q Consensus 159 fK~~CP~AYsy~~Dd~ts~ftC-~~~~y~vtFC 190 (190)
||+||+||+||++++|+| ++++|+|+||
T Consensus 129 ----Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 ----CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ----CccccccCCCCCccceECCCCCCEEEEeC
Confidence 999999999999999999 5699999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=1.2e-44 Score=289.05 Aligned_cols=129 Identities=57% Similarity=1.208 Sum_probs=114.4
Q ss_pred CCCeEeCCCCeEEEecCCC-ceeeeeeccCCCCCCCCCccccccCCCCcccCCCCCCCCCcceeEEeeCC-CCccccccc
Q 029619 2 NGGVRLNAGENIKIEAPKG-WSGRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPVSLAEFTLDS-PEDFYDVSL 79 (190)
Q Consensus 2 ~~G~~L~pg~s~~~~vp~~-WsGriWaRtgCs~~~~g~~~C~TGdC~g~~~C~~~~~~~p~TlaEftl~~-~~d~YdvSl 79 (190)
++||+|+||++++|.+|++ |+|||||||+|++++.|+++|+||||+|+++|+ .+++||+||+||+|+. .+||||||+
T Consensus 19 ~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~-~~g~pp~Tl~E~tl~~~~~d~YdISl 97 (151)
T cd09217 19 GGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCGGVLSCT-GSGKPPATLAEYTLNQSGQDFYDISL 97 (151)
T ss_pred CCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCCCeeecC-CCCCCCceeEEEEecCCCCccEEEEe
Confidence 5899999999999999997 999999999999999999999999999999998 4568999999999976 489999999
Q ss_pred cccccCceeEeecCCCCCCccccccccCccCCCCCccccccCceeccchhhhhcCCCccccCCCCCCCCCCCCCcchhHH
Q 029619 80 VDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDTGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIF 159 (190)
Q Consensus 80 VdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~~~~~g~~v~C~SaC~~~~~~~~CC~g~~~~~~~C~pt~ys~~f 159 (190)
||||||||+|.|+++ .|+..+|.. .
T Consensus 98 VdG~NlP~~i~P~~~--~C~~~~C~~-----------------------------------------------d------ 122 (151)
T cd09217 98 VDGFNVPMDFSPTGG--GCHAIPCAA-----------------------------------------------N------ 122 (151)
T ss_pred ecccccceEEecCCC--CCCCCcCCC-----------------------------------------------C------
Confidence 999999999999732 344333321 1
Q ss_pred hhcCCCccccccCCCCCceee-cCCCeEEEeC
Q 029619 160 KESCPDAYSYAYDDLTSTFTC-KDANYTISFC 190 (190)
Q Consensus 160 K~~CP~AYsy~~Dd~ts~ftC-~~~~y~vtFC 190 (190)
||+||+|++|| .++++| .+++|+|+||
T Consensus 123 ---C~~ay~~~~D~-~~~~~C~~~~~~~v~fC 150 (151)
T cd09217 123 ---CPDAYSYPKDP-TTTFTCPGGTNYRIVFC 150 (151)
T ss_pred ---CchHhcCCCCC-CceEeCCCCCCEEEEeC
Confidence 99999999994 799999 8999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=6.9e-43 Score=279.32 Aligned_cols=125 Identities=50% Similarity=0.924 Sum_probs=111.2
Q ss_pred CCCeEeCCCCeEEEecCCCceeeeeeccCCCCCCCCCccccccCCCCcccCCCCCCCCCcceeEEeeCCC--Cccccccc
Q 029619 2 NGGVRLNAGENIKIEAPKGWSGRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGAGGEPPVSLAEFTLDSP--EDFYDVSL 79 (190)
Q Consensus 2 ~~G~~L~pg~s~~~~vp~~WsGriWaRtgCs~~~~g~~~C~TGdC~g~~~C~~~~~~~p~TlaEftl~~~--~d~YdvSl 79 (190)
.+||+|.||++++|+||..|+|||||||+|+++..+++.|+||||++ +.|.+.++.||+|||||+|+.. +|||||||
T Consensus 26 ~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~~g~pp~TlaEfTl~~~~~~dfydISl 104 (153)
T cd08961 26 ASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDPNRDPPFTLAEFTLNDFNSGDFIDSSL 104 (153)
T ss_pred CcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCCC-cccCCCCCCCCcceEEEEecCCCCcceEEEEe
Confidence 47999999999999999999999999999999988999999999998 7888778889999999999863 89999999
Q ss_pred cccccCceeEeecCCCCCCccccccccCccCCCCCccccccCceeccchhhhhcCCCccccCCCCCCCCCCCCCcchhHH
Q 029619 80 VDGYNVPMSIIPSGGTGGCKSVNCVSDLNTKCPEDLQQKDTGRVVACKSACMAFNTPEYCCTGAFGGPNTCKPTNYSKIF 159 (190)
Q Consensus 80 VdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~~~~~g~~v~C~SaC~~~~~~~~CC~g~~~~~~~C~pt~ys~~f 159 (190)
||||||||+|+|+.+.+. |++..
T Consensus 105 VDGfNlP~~i~p~~~~g~----------------------------------------------------C~~~~----- 127 (153)
T cd08961 105 VDGFNAPMTVGPRRGDGT----------------------------------------------------CLSTG----- 127 (153)
T ss_pred ecccCCCEEEEeccCCCC----------------------------------------------------ccccc-----
Confidence 999999999999743211 22111
Q ss_pred hhcCCCccccccCCCCCceee-cCCCeEEEe
Q 029619 160 KESCPDAYSYAYDDLTSTFTC-KDANYTISF 189 (190)
Q Consensus 160 K~~CP~AYsy~~Dd~ts~ftC-~~~~y~vtF 189 (190)
+||+|||||+.++|+| .+.+|.|+|
T Consensus 128 -----~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 128 -----DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred -----cccccCCCCccceEEcCCCCceEEeC
Confidence 9999999999999999 899999998
No 8
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.13 E-value=0.038 Score=50.07 Aligned_cols=78 Identities=24% Similarity=0.432 Sum_probs=49.2
Q ss_pred CCCCeEEEecCCCceeeeeeccCCCCCCCCCccccccCCCCcccCCCC-C-CCCCc----ceeEEeeCCCCccccccccc
Q 029619 8 NAGENIKIEAPKGWSGRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGA-G-GEPPV----SLAEFTLDSPEDFYDVSLVD 81 (190)
Q Consensus 8 ~pg~s~~~~vp~~WsGriWaRtgCs~~~~g~~~C~TGdC~g~~~C~~~-~-~~~p~----TlaEftl~~~~d~YdvSlVd 81 (190)
.+|++..|.+|. ++||||=-.+=.. .|. ... +..+.-... . .-|.. .-+|||++...-|-++|.||
T Consensus 60 ~~G~~~tvtiP~-~sgRiyfS~g~~L----~F~-~~~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~~gl~~N~T~VD 131 (353)
T cd09216 60 SPGDTTTVLPPR-MSGRIYFSLGSKL----RFK-VVT--NPALVQPAGWNPSDPNFNILHDWVEFTFNDAGLFCNTTQVD 131 (353)
T ss_pred CCCCceEEcccc-cCcEEEEEcCCee----EEE-ecC--CCcccCCCCCCCCCCCccceEEEEEEEecCCceEeccccee
Confidence 368889999998 9999995532111 111 111 112222210 0 11111 34999998777889999999
Q ss_pred cccCceeEeecC
Q 029619 82 GYNVPMSIIPSG 93 (190)
Q Consensus 82 G~NlP~~i~p~~ 93 (190)
-|.+||.|+-.+
T Consensus 132 ~~~~P~~l~l~~ 143 (353)
T cd09216 132 MFSAPLAIGLRG 143 (353)
T ss_pred eeccceEEEEec
Confidence 999999997553
No 9
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=94.70 E-value=0.072 Score=48.54 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=49.6
Q ss_pred CCCeEEEecCCCceeeeeeccCCCCCCCCCccccccCCCCcccCCCC-C-CCCCc----ceeEEeeCCCCcccccccccc
Q 029619 9 AGENIKIEAPKGWSGRFWPRTGCTFDQSGNGKCVTGDCGAKLNCNGA-G-GEPPV----SLAEFTLDSPEDFYDVSLVDG 82 (190)
Q Consensus 9 pg~s~~~~vp~~WsGriWaRtgCs~~~~g~~~C~TGdC~g~~~C~~~-~-~~~p~----TlaEftl~~~~d~YdvSlVdG 82 (190)
+|++.+|+||.-++||||=-.+=.. .|- ...+ +-.+.-... . .-|.. ..+|||++...-|-++|.||-
T Consensus 62 ~G~~~titiP~i~sgRIyfS~g~~L----~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~~~l~~N~S~VD~ 135 (369)
T cd09220 62 PGSTTTVTIPILAGGRIWFSVDDKL----TFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNSGQLYANISYVDF 135 (369)
T ss_pred CCCceeEEcccccceEEEEEcCCeE----EEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecCCceEecccceee
Confidence 6888999999999999995432211 111 1111 211111111 0 11111 449999987788899999999
Q ss_pred ccCceeEeec
Q 029619 83 YNVPMSIIPS 92 (190)
Q Consensus 83 ~NlP~~i~p~ 92 (190)
|.+||.|+-.
T Consensus 136 ~~~P~~l~l~ 145 (369)
T cd09220 136 VGLPLGLSLT 145 (369)
T ss_pred eccCeEEEEE
Confidence 9999999755
No 10
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=93.84 E-value=0.12 Score=41.69 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=35.3
Q ss_pred CCcceeEEeeCCC--Cccccccccccc---cCceeEeecCCCCCCccccccc
Q 029619 59 PPVSLAEFTLDSP--EDFYDVSLVDGY---NVPMSIIPSGGTGGCKSVNCVS 105 (190)
Q Consensus 59 ~p~TlaEftl~~~--~d~YdvSlVdG~---NlP~~i~p~~g~~~C~~~~C~~ 105 (190)
.|.|..||+|... +.|||+|-|.|. .-+|.|.|++. .|.++-++.
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~--~Cp~I~Wp~ 121 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDP--SCPSIVWPN 121 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCC--CCCceECCC
Confidence 6899999999754 899999999996 35678888753 687666654
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=80.57 E-value=1.2 Score=39.89 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=28.0
Q ss_pred ceeEEeeCCCCccccccccccccCceeEeecC
Q 029619 62 SLAEFTLDSPEDFYDVSLVDGYNVPMSIIPSG 93 (190)
Q Consensus 62 TlaEftl~~~~d~YdvSlVdG~NlP~~i~p~~ 93 (190)
..+|||++...-|-++|.||-|.+||.|+-.+
T Consensus 124 df~EFT~n~~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYNATGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEecCCceEecccceeeeccCeEEEEEc
Confidence 34999998778999999999999999998664
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=64.73 E-value=4.7 Score=36.14 Aligned_cols=23 Identities=26% Similarity=0.628 Sum_probs=19.7
Q ss_pred CCcchhHHhhcCC--CccccccCCC
Q 029619 152 PTNYSKIFKESCP--DAYSYAYDDL 174 (190)
Q Consensus 152 pt~ys~~fK~~CP--~AYsy~~Dd~ 174 (190)
.+.|++++.+.-. .||.|||||-
T Consensus 275 tN~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 275 ANYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred chHHHHHHHHhccCCCeeecccccc
Confidence 3578999999987 8999999984
No 13
>PHA03094 dUTPase; Provisional
Probab=64.28 E-value=9.1 Score=30.18 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=25.2
Q ss_pred CeEeCCCCeEE------EecCCCceeeeeeccCCCC
Q 029619 4 GVRLNAGENIK------IEAPKGWSGRFWPRTGCTF 33 (190)
Q Consensus 4 G~~L~pg~s~~------~~vp~~WsGriWaRtgCs~ 33 (190)
.+.|.|++... +.+|.+|.|.|++|.+-..
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla~ 70 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGLSL 70 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEccccccc
Confidence 47899999877 7799999999999976644
No 14
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=59.03 E-value=12 Score=25.46 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=19.3
Q ss_pred eEeCCCCeEEEecCCCc-----eeeeee
Q 029619 5 VRLNAGENIKIEAPKGW-----SGRFWP 27 (190)
Q Consensus 5 ~~L~pg~s~~~~vp~~W-----sGriWa 27 (190)
|+|.||+..++.+.... +|++|-
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 78999999999988764 488885
No 15
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=55.54 E-value=9.5 Score=34.95 Aligned_cols=24 Identities=38% Similarity=0.866 Sum_probs=20.6
Q ss_pred CCCcchhHHhhcCC--CccccccCCC
Q 029619 151 KPTNYSKIFKESCP--DAYSYAYDDL 174 (190)
Q Consensus 151 ~pt~ys~~fK~~CP--~AYsy~~Dd~ 174 (190)
..+.|++++.+.-+ .+|.|||||-
T Consensus 319 ~tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 319 PTNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred CchHHHHHHHHhccCCCeeccccccc
Confidence 34579999999887 7899999996
No 16
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=46.64 E-value=9.1 Score=34.85 Aligned_cols=22 Identities=36% Similarity=0.857 Sum_probs=19.0
Q ss_pred CcchhHHhhcCC--CccccccCCC
Q 029619 153 TNYSKIFKESCP--DAYSYAYDDL 174 (190)
Q Consensus 153 t~ys~~fK~~CP--~AYsy~~Dd~ 174 (190)
+.|++++.+.-. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 578999999877 6899999994
No 17
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=46.62 E-value=32 Score=24.11 Aligned_cols=29 Identities=38% Similarity=0.794 Sum_probs=22.5
Q ss_pred CeEeCCCCeEE------EecCCCceeeeeeccCCC
Q 029619 4 GVRLNAGENIK------IEAPKGWSGRFWPRTGCT 32 (190)
Q Consensus 4 G~~L~pg~s~~------~~vp~~WsGriWaRtgCs 32 (190)
.+.|.|++... +.+|.++.|.|++|.+-.
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~~ 47 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSLA 47 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchhh
Confidence 48899998754 447889999999997553
No 18
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=37.77 E-value=36 Score=24.86 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=19.7
Q ss_pred eEeCCCCeEEEecCCCceeeeeeccC
Q 029619 5 VRLNAGENIKIEAPKGWSGRFWPRTG 30 (190)
Q Consensus 5 ~~L~pg~s~~~~vp~~WsGriWaRtg 30 (190)
++|+||+++++.+|.+|..-|....|
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G 29 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEG 29 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEES
T ss_pred EEECCCCEEEeecCCCCEEEEEEEEC
Confidence 57999999999999999988877754
No 19
>PLN02547 dUTP pyrophosphatase
Probab=37.36 E-value=46 Score=26.64 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=22.8
Q ss_pred CeEeCCCCeE------EEecCCCceeeeeeccCCC
Q 029619 4 GVRLNAGENI------KIEAPKGWSGRFWPRTGCT 32 (190)
Q Consensus 4 G~~L~pg~s~------~~~vp~~WsGriWaRtgCs 32 (190)
.+.|.|++.. .+.+|.+|.|.|++|.+=.
T Consensus 46 d~~i~P~~~~li~tgi~v~iP~g~~g~i~~RSgla 80 (157)
T PLN02547 46 DTVVPARGKALVPTDLSIAIPEGTYARIAPRSGLA 80 (157)
T ss_pred CeEECCCCEEEEEeceEEEcCCCeEEEEEcccccc
Confidence 4678888875 4568899999999997653
No 20
>PHA02703 ORF007 dUTPase; Provisional
Probab=35.71 E-value=47 Score=26.88 Aligned_cols=30 Identities=33% Similarity=0.510 Sum_probs=23.6
Q ss_pred CeEeCCCCeE------EEecCCCceeeeeeccCCCC
Q 029619 4 GVRLNAGENI------KIEAPKGWSGRFWPRTGCTF 33 (190)
Q Consensus 4 G~~L~pg~s~------~~~vp~~WsGriWaRtgCs~ 33 (190)
.+.|.|++.. .|.+|.+|.|.|++|.+-..
T Consensus 43 d~vi~P~~~~lv~TGi~i~iP~g~~g~i~~RSsla~ 78 (165)
T PHA02703 43 DCIVPAGCRCVVFTDLLIKLPDGCYGRIAPRSGLAV 78 (165)
T ss_pred CeEECCCCEEEEeCCeEEEcCCCeEEEEECCccchh
Confidence 4678899874 55689999999999976644
No 21
>PRK00601 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=34.91 E-value=59 Score=25.66 Aligned_cols=29 Identities=34% Similarity=0.682 Sum_probs=23.2
Q ss_pred CeEeCCCCeE------EEecCCCceeeeeeccCCC
Q 029619 4 GVRLNAGENI------KIEAPKGWSGRFWPRTGCT 32 (190)
Q Consensus 4 G~~L~pg~s~------~~~vp~~WsGriWaRtgCs 32 (190)
.+.|.||++. .+.+|.++.+.|++|.+-.
T Consensus 39 ~i~i~P~~~~lv~tg~~v~~p~~~~~~i~~RSsla 73 (150)
T PRK00601 39 PVTLAPGERALVPTGLAIHIPDGYEAQILPRSGLA 73 (150)
T ss_pred CCEECCCCeEEEEcCEEEECCCCeEEEEEeCCccc
Confidence 6789999875 4557889999999997654
No 22
>TIGR00576 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (dut). Changed role from 132 to 123. RTD
Probab=30.70 E-value=68 Score=24.97 Aligned_cols=29 Identities=41% Similarity=0.752 Sum_probs=22.3
Q ss_pred CeEeCCCCeE------EEecCCCceeeeeeccCCC
Q 029619 4 GVRLNAGENI------KIEAPKGWSGRFWPRTGCT 32 (190)
Q Consensus 4 G~~L~pg~s~------~~~vp~~WsGriWaRtgCs 32 (190)
.+.|.|++.. .+.+|.++.|.|++|.+-.
T Consensus 30 d~~i~P~~~~lv~tg~~v~ip~g~~~~i~~RSsl~ 64 (141)
T TIGR00576 30 DVTIPPGERALVPTGIAIELPDGYYGRVAPRSGLA 64 (141)
T ss_pred CeEECCCCEEEEEeCcEEecCCCEEEEEEecccCc
Confidence 4678888875 3557889999999997553
No 23
>TIGR02274 dCTP_deam deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation.
Probab=30.31 E-value=83 Score=25.38 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=23.1
Q ss_pred CCeEeCCCCeE------EEecCCCceeeeeeccCC
Q 029619 3 GGVRLNAGENI------KIEAPKGWSGRFWPRTGC 31 (190)
Q Consensus 3 ~G~~L~pg~s~------~~~vp~~WsGriWaRtgC 31 (190)
.++.|.||+.. .+.+|.++.|.|++|.+=
T Consensus 69 ~~~~l~Pg~~~lv~t~e~i~lP~~~~~~i~~RSsl 103 (179)
T TIGR02274 69 EEFVIPPGEFALATTLEYVKLPDDVVGFLEGRSSL 103 (179)
T ss_pred CcEEECCCCEEEEEeceEEEcCCCeEEEEEecccc
Confidence 46899999874 345899999999999643
No 24
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=28.61 E-value=17 Score=28.56 Aligned_cols=17 Identities=47% Similarity=1.109 Sum_probs=13.3
Q ss_pred CCccccccCCCCcccCC
Q 029619 37 GNGKCVTGDCGAKLNCN 53 (190)
Q Consensus 37 g~~~C~TGdC~g~~~C~ 53 (190)
|.+.|+-|||||.|.|+
T Consensus 83 g~Gp~~PGdCGg~L~C~ 99 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCK 99 (127)
T ss_dssp EE-SSSTT-TCSEEEET
T ss_pred ecccCCCCCCCceeEeC
Confidence 45689999999999997
No 25
>PRK13956 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=28.33 E-value=76 Score=25.21 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=22.0
Q ss_pred CeEeCCCCeEE------EecCCCceeeeeeccCCC
Q 029619 4 GVRLNAGENIK------IEAPKGWSGRFWPRTGCT 32 (190)
Q Consensus 4 G~~L~pg~s~~------~~vp~~WsGriWaRtgCs 32 (190)
.+.|.||+... +.+|.+|.|.|++|.+-.
T Consensus 36 ~~~i~p~~~~lv~TGi~i~lP~g~~~~I~~RSsla 70 (147)
T PRK13956 36 RTVIAPGEIKLVPTGVKAYMQPGEVLYLYDRSSNP 70 (147)
T ss_pred CeEECCCCEEEEECCeEEECCCCeEEEEecCchhh
Confidence 46788887654 448889999999997543
No 26
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=26.58 E-value=21 Score=28.63 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=7.7
Q ss_pred ccccccCcee
Q 029619 79 LVDGYNVPMS 88 (190)
Q Consensus 79 lVdG~NlP~~ 88 (190)
|||||||=..
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899997554
No 27
>PRK02253 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=26.57 E-value=92 Score=24.94 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=22.3
Q ss_pred CCeEeCCCCe-----EEEecCCCceeeeeeccCC
Q 029619 3 GGVRLNAGEN-----IKIEAPKGWSGRFWPRTGC 31 (190)
Q Consensus 3 ~G~~L~pg~s-----~~~~vp~~WsGriWaRtgC 31 (190)
+++.|.||+. -.+.+|.++.|.+++|.+=
T Consensus 70 ~~~~l~pg~~l~~t~E~v~ip~~~~~~~~~RSsl 103 (167)
T PRK02253 70 GWIRLEPGIYKVRYNEVVNIPEDHVGFAYPRSSL 103 (167)
T ss_pred CeEEECCCCEEEEeeeEEECCCCcEEEEECCcHH
Confidence 4678899863 2455899999999999654
No 28
>PHA01707 dut 2'-deoxyuridine 5'-triphosphatase
Probab=26.19 E-value=98 Score=24.65 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=22.2
Q ss_pred CCeEeCCCCeE------EEecCCCceeeeeeccC
Q 029619 3 GGVRLNAGENI------KIEAPKGWSGRFWPRTG 30 (190)
Q Consensus 3 ~G~~L~pg~s~------~~~vp~~WsGriWaRtg 30 (190)
.+|.|.||+.. .|.+|.+..|+|++|.+
T Consensus 53 ~~~~l~Pg~~~l~~T~E~i~lP~~~~~~i~~RSs 86 (158)
T PHA01707 53 DEFIIYPHEHVLLTTKEYIKLPNDIIAFCNLRST 86 (158)
T ss_pred CcEEECCCCEEEEEEeEEEECCCCEEEEEECcch
Confidence 47889999753 45589999999999953
No 29
>PRK00416 dcd deoxycytidine triphosphate deaminase; Reviewed
Probab=24.20 E-value=1.2e+02 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=22.4
Q ss_pred CCeEeCCCCeEE------EecCCCceeeeeeccC
Q 029619 3 GGVRLNAGENIK------IEAPKGWSGRFWPRTG 30 (190)
Q Consensus 3 ~G~~L~pg~s~~------~~vp~~WsGriWaRtg 30 (190)
.++.|.||+..- +.+|.++.|.|.+|.+
T Consensus 69 ~~~~l~pg~~~lv~t~e~i~lP~~~~~~i~~RSs 102 (177)
T PRK00416 69 EVFILPPGEFALARTLEYFKLPDDVVGILEGRSS 102 (177)
T ss_pred CeEEECCCCEEEEEeeeEEECCCCeEEEEEeCch
Confidence 578999997543 5589999999999954
Done!