BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029621
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
Length = 178
Score = 267 bits (682), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 123/142 (86%), Positives = 131/142 (92%)
Query: 48 QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADF 107
PH LE+SWTFWFD P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADF
Sbjct: 1 MPHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 108 YCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
YCFK+KIEPKWEDP+CANGGKWT +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV
Sbjct: 61 YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 120
Query: 168 RARQEKISLWTKNASNEAAQVT 189
R R EKIS+WTKNASNEAAQV+
Sbjct: 121 RGRAEKISIWTKNASNEAAQVS 142
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 234 bits (597), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 103/140 (73%), Positives = 126/140 (90%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPLE++WTFWFDNP KS+Q WGS++ I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
FKNKIEPKWEDP+CANGGKWT+ +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR
Sbjct: 62 FKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121
Query: 170 RQEKISLWTKNASNEAAQVT 189
+QE++++WTKNA+NEAAQ++
Sbjct: 122 KQERVAIWTKNAANEAAQIS 141
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
Methyl-Gdp
Length = 177
Score = 231 bits (588), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 102/140 (72%), Positives = 125/140 (89%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPLE++WTFWFDNP KS+Q WGS++ I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
FKNKIEPKWEDP+ ANGGKWT+ +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR
Sbjct: 62 FKNKIEPKWEDPISANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121
Query: 170 RQEKISLWTKNASNEAAQVT 189
+QE++++WTKNA+NEAAQ++
Sbjct: 122 KQERVAIWTKNAANEAAQIS 141
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 6/142 (4%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL + WT W+ + +W I +F +VE+FWSLYN+I PS++ +G+D+
Sbjct: 70 HPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 126
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGDEICGAVVN 166
FK I P WED GG+W + K D WL LL +IGE FDH D+ICGAV+N
Sbjct: 127 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVIN 186
Query: 167 VRARQEKISLWTKNASNEAAQV 188
+R + KIS+WT + +NE A +
Sbjct: 187 IRGKSNKISIWTADGNNEEAAL 208
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 8/142 (5%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 37 HPLQNRWALWF---FKKDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153
Query: 165 VNVRARQEKISLWTKNASNEAA 186
VNVRA+ +KI++WT N A
Sbjct: 154 VNVRAKGDKIAIWTTECENREA 175
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gtp
pdb|2GPQ|A Chain A, Cap-Free Structure Of Eif4e Suggests Basis For Its
Allosteric Regulation
pdb|2V8W|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8W|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2W97|A Chain A, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
pdb|3TF2|A Chain A, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|B Chain B, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|C Chain C, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|D Chain D, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3U7X|A Chain A, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|3U7X|B Chain B, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|4AZA|A Chain A, Improved Eif4e Binding Peptides By Phage Display Guided
Design.
pdb|4AZA|C Chain C, Improved Eif4e Binding Peptides By Phage Display Guided
Design
Length = 217
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 37 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153
Query: 165 VNVRARQEKISLWTKNASNEAA 186
VNVRA+ +KI++WT N A
Sbjct: 154 VNVRAKGDKIAIWTTECENREA 175
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 60 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 116
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 117 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 176
Query: 165 VNVRARQEKISLWTKNASNEAA 186
VNVRA+ +KI++WT N A
Sbjct: 177 VNVRAKGDKIAIWTTECENREA 198
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa-
4ebp1 Peptide
pdb|3AM7|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gtp-4ebp2 Peptide
Length = 191
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 11 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 67
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 68 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 127
Query: 165 VNVRARQEKISLWTKNASNEAA 186
VNVRA+ +KI++WT N A
Sbjct: 128 VNVRAKGDKIAIWTTECENREA 149
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
Length = 190
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 10 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 66
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK+ IEP WED GG+W + K + D WL TLL +IGE F D+ D++CGAV
Sbjct: 67 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 126
Query: 165 VNVRARQEKISLWTKNASNEAA 186
VNVRA+ +KI++WT N A
Sbjct: 127 VNVRAKGDKIAIWTTECENRDA 148
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 94/146 (64%), Gaps = 4/146 (2%)
Query: 44 AVMQQP--HPLEHSWTFWFDN--PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPS 99
AV+ P HPL++++TFW+ P + ++ +++ I TF+SVE+FW Y+++ P
Sbjct: 7 AVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPG 66
Query: 100 KLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDE 159
L +DF+ FK I+P WED NGGKW + KG + W +LAM+GEQF G+E
Sbjct: 67 DLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEE 126
Query: 160 ICGAVVNVRARQEKISLWTKNASNEA 185
ICGAVV+VR +++ IS+W K AS++A
Sbjct: 127 ICGAVVSVRFQEDIISIWNKTASDQA 152
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 84/137 (61%), Gaps = 8/137 (5%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL+ W W+ + W ++ + F +VE+FWSLYN+I S L G+D+Y
Sbjct: 3 HPLQCHWALWY---LKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
FK I+P WED GG+W V+ K K D WL L+A+IGEQF D+G+ ICGAV
Sbjct: 60 FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAV 119
Query: 165 VNVRARQEKISLWTKNA 181
VNVR + +K+SLWT+++
Sbjct: 120 VNVRQKGDKVSLWTRDS 136
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp,
Nmr, 20 Structures
Length = 213
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL WT W+ P A K +W +R + +F +VEEFW++ NI P +L + +D++
Sbjct: 37 HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGD-EICGAVV 165
F+N + P+WED A GGKW+ +GK D WL TLLA+IGE D D +I G V+
Sbjct: 96 FRNDVRPEWEDEANAKGGKWSFQL-RGKGADIDELWLRTLLAVIGETIDEDDSQINGVVL 154
Query: 166 NVRARQEKISLWTKNASNE 184
++R K +LWTK+ E
Sbjct: 155 SIRKGGNKFALWTKSEDKE 173
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL WT W+ P A K +W +R + +F +VEEFW++ NI P +L + +D++
Sbjct: 37 HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTV-IFPKGKS-DTSWLYTLLAMIGEQFDHGD-EICGAVVN 166
F+N + P+WED A GGKW+ + KG D WL TLLA+IGE D D +I G V++
Sbjct: 96 FRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIGETIDEDDSQINGVVLS 155
Query: 167 VRARQEKISLWTKNASNE 184
+R K +LWTK E
Sbjct: 156 IRKGGNKFALWTKCEDKE 173
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
PHPL+ SW+++ F K W + + TFS++E+FWS+ + P ++ G D Y
Sbjct: 9 PHPLQDSWSYYL---FQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 109 CFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTLLAMIGEQFDHGDE---ICGAV 164
FK+ I PKWEDP NGG+W + + + D W L+ +IG +D +E ICGAV
Sbjct: 66 MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 165 VNVRARQEKISLWTKNASNE 184
R+R K+S+W + + E
Sbjct: 126 FQPRSRGSKLSVWLTSDNEE 145
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 51 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCF 110
PL WTFW D + A S+++ IYT +V+ FWS+YNNI + L + ++
Sbjct: 31 PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLM 90
Query: 111 KNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDH----GDEICGAVVN 166
+ + P WE+ A GG W + PK + T W LLA IGEQF DEI G V+
Sbjct: 91 RGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVS 150
Query: 167 VRARQEKISLWTKNAS 182
VR R++ + +W NAS
Sbjct: 151 VRDREDVVQVWNVNAS 166
>pdb|3MGJ|A Chain A, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a.
pdb|3MGJ|B Chain B, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a
Length = 118
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 108 YCFKNKIEPKWEDPVCANGGKWTVI-FPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVN 166
+ + I PK D + GG + V+ F GK T Y + +IG H DEI + +
Sbjct: 11 HIIDSLILPKVFDKILDXGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRD 70
Query: 167 VRA 169
+ A
Sbjct: 71 LGA 73
>pdb|2WC5|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2)
Length = 142
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 64 FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
F K+ + S S+ + FWS ++ H +G C NK +D
Sbjct: 13 FGKTLEECREESGLSVDILDEFKHFWSDDFDVVHRE---LGCAIICMSNKFSLMDDDVRM 69
Query: 124 --ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
N ++ FP G+ + L+ +QFD + C VV V A
Sbjct: 70 HHVNMDEYIKSFPNGQVLAEKMVKLIHNCEKQFDTETDDCTRVVKVAA 117
>pdb|2WC6|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With Bombykol And Water To Arg 110
pdb|2WCH|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With Bombykal
pdb|2WCJ|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With (10e,12z)-Tetradecadien-1-Ol
pdb|2WCK|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) Without Ligand
pdb|2WCL|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With (8e,10z)-Hexadecadien-1-Ol
pdb|2WCM|A Chain A, Structure Of Bmori Gobp2 (General Odorant Binding Protein
2) With (10e)-Hexadecen-12-Yn-1-Ol
Length = 141
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 64 FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
F K+ + S S+ + FWS ++ H +G C NK +D
Sbjct: 12 FGKTLEECREESGLSVDILDEFKHFWSDDFDVVHRE---LGCAIICMSNKFSLMDDDVRM 68
Query: 124 --ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
N ++ FP G+ + L+ +QFD + C VV V A
Sbjct: 69 HHVNMDEYIKSFPNGQVLAEKMVKLIHNCEKQFDTETDDCTRVVKVAA 116
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 28.1 bits (61), Expect = 2.9, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 96 HHPSKLAVGADFY--------CFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLL 147
++PS +V D++ C K+ IE K ED +CA G + WL +
Sbjct: 545 YYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAM 604
Query: 148 AMIGEQ 153
I E+
Sbjct: 605 NRIAEE 610
>pdb|3E2Q|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With Trans-4-Hydroxy-L-Proline
pdb|3E2R|A Chain A, Crystal Structure Puta86-630 Mutant Y540s Complexed With
L-Tetrahydro- 2-Furoic Acid
pdb|3E2S|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With L- Proline
Length = 551
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 147 LAMIGEQFDHGDEICGAVVNVRARQEK 173
+ ++GEQF G+ I A+ N R +EK
Sbjct: 167 MRLMGEQFVTGETIAEALANARKLEEK 193
>pdb|1TJ2|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With Acetate
Length = 584
Score = 26.6 bits (57), Expect = 9.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 147 LAMIGEQFDHGDEICGAVVNVRARQEK 173
+ ++GEQF G+ I A+ N R +EK
Sbjct: 167 MRLMGEQFVTGETIAEALANARKLEEK 193
>pdb|1TIW|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With
L-Tetrahydro-2-Furoic Acid
pdb|1TJ0|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Co-Crystallized With L-Lactate
pdb|1TJ1|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With L-Lactate
pdb|2FZN|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With Proline
pdb|2FZM|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With So2
Length = 602
Score = 26.6 bits (57), Expect = 9.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 147 LAMIGEQFDHGDEICGAVVNVRARQEK 173
+ ++GEQF G+ I A+ N R +EK
Sbjct: 167 MRLMGEQFVTGETIAEALANARKLEEK 193
>pdb|3ITG|A Chain A, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
pdb|3ITG|B Chain B, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
Length = 602
Score = 26.6 bits (57), Expect = 9.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 147 LAMIGEQFDHGDEICGAVVNVRARQEK 173
+ ++GEQF G+ I A+ N R +EK
Sbjct: 167 MRLMGEQFVTGETIAEALANARKLEEK 193
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 26.6 bits (57), Expect = 9.5, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 147 LAMIGEQFDHGDEICGAVVNVRARQEK 173
+ ++GEQF G+ I A+ N R +EK
Sbjct: 252 MRLMGEQFVTGETIAEALANARKLEEK 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,089,047
Number of Sequences: 62578
Number of extensions: 238534
Number of successful extensions: 321
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 27
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)