Query 029621
Match_columns 190
No_of_seqs 129 out of 651
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 15:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1670 Translation initiation 100.0 2.7E-53 5.9E-58 351.7 12.4 141 46-189 31-174 (212)
2 PTZ00040 translation initiatio 100.0 3.7E-49 8E-54 334.6 14.4 141 47-187 35-200 (233)
3 PF01652 IF4E: Eukaryotic init 100.0 3.4E-48 7.5E-53 312.0 13.4 137 51-187 1-141 (165)
4 KOG1669 Predicted mRNA cap-bin 100.0 7.1E-45 1.5E-49 295.0 8.3 144 45-188 25-168 (208)
5 COG5053 CDC33 Translation init 100.0 5.1E-40 1.1E-44 269.4 10.6 141 46-187 33-177 (217)
6 PF08939 DUF1917: Domain of un 89.4 1.1 2.4E-05 38.8 6.2 60 124-188 148-213 (243)
7 PF11525 CopK: Copper resistan 51.4 8.3 0.00018 27.4 1.1 23 97-120 8-30 (73)
8 PF08977 BOFC_N: Bypass of For 50.3 9.4 0.0002 25.5 1.2 30 80-112 21-50 (51)
9 PHA02744 hypothetical protein; 34.5 29 0.00063 25.7 1.8 58 129-186 9-74 (88)
10 KOG0080 GTPase Rab18, small G 34.2 67 0.0014 26.9 4.1 35 144-178 26-66 (209)
11 COG3822 ABC-type sugar transpo 28.9 47 0.001 28.3 2.4 29 107-135 91-125 (225)
12 PF06462 Hyd_WA: Propeller; I 26.8 47 0.001 19.6 1.5 20 106-130 10-29 (32)
13 PF10842 DUF2642: Protein of u 21.1 1.6E+02 0.0034 20.5 3.5 41 137-177 7-50 (66)
No 1
>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-53 Score=351.69 Aligned_cols=141 Identities=53% Similarity=1.014 Sum_probs=133.3
Q ss_pred CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (190)
Q Consensus 46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~ 125 (190)
....|||++.|||||..+..+ ..|++.|+.|.+|+|||+||++|++|++||+|+.+|+|+|||+||+||||||+|++
T Consensus 31 ~~~~hpL~~~WTlW~l~~d~~---ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~ 107 (212)
T KOG1670|consen 31 NHIKHPLQNNWTLWFLKNDRN---KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKN 107 (212)
T ss_pred cccccccccceeEEeecCCcc---ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccC
Confidence 446999999999999988754 28999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCC---ChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhhc
Q 029621 126 GGKWTVIFPKG---KSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVT 189 (190)
Q Consensus 126 GG~w~i~~~k~---~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~~ 189 (190)
||||.|.+++. .+|.+|.++||+||||+|+++++|||+|+++|++++|||||++++.++++++.
T Consensus 108 GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~~~l~ 174 (212)
T KOG1670|consen 108 GGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEEAVLR 174 (212)
T ss_pred CCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchHHHHH
Confidence 99999999864 58999999999999999999999999999999999999999999999998763
No 2
>PTZ00040 translation initiation factor E4; Provisional
Probab=100.00 E-value=3.7e-49 Score=334.59 Aligned_cols=141 Identities=31% Similarity=0.629 Sum_probs=128.3
Q ss_pred CCCCCCCcceEEEEECCCCc-ccccchhhhcceeeeeccHHHHHhhcccccccccCcccce---------------eeee
Q 029621 47 QQPHPLEHSWTFWFDNPFAK-SKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGAD---------------FYCF 110 (190)
Q Consensus 47 ~~~hpL~~~Wt~W~~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~---------------~~lF 110 (190)
..+|||+++|||||+.+..+ .+..+|.++|++|++|+|||+||++|+||++||+|+.+++ ||||
T Consensus 35 ~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lF 114 (233)
T PTZ00040 35 STPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIF 114 (233)
T ss_pred CCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeee
Confidence 56899999999999977543 3467899999999999999999999999999999998874 9999
Q ss_pred cCCCccCCCCCCCCCCcEEEEEecC-----CChHHHHHHHHHHHhcCCCCCCCCeeeEEE----EEcCCCcEEEEecCCC
Q 029621 111 KNKIEPKWEDPVCANGGKWTVIFPK-----GKSDTSWLYTLLAMIGEQFDHGDEICGAVV----NVRARQEKISLWTKNA 181 (190)
Q Consensus 111 K~gI~P~WEDp~N~~GG~w~i~~~k-----~~~d~~We~lll~~IGe~f~~~~~I~Giv~----s~R~~~~rIsIW~~~~ 181 (190)
|+||+||||||+|++||+|+|++.+ ..+|++|++|||++|||+|+.+++||||+| |+|++.+||+||++++
T Consensus 115 K~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~~ 194 (233)
T PTZ00040 115 KDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNL 194 (233)
T ss_pred cCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCCC
Confidence 9999999999999999999999965 347999999999999999998999999996 6778889999999999
Q ss_pred CChhhh
Q 029621 182 SNEAAQ 187 (190)
Q Consensus 182 ~~~~~~ 187 (190)
++.+++
T Consensus 195 ~d~~~~ 200 (233)
T PTZ00040 195 GDQSDR 200 (233)
T ss_pred CCHHHH
Confidence 988765
No 3
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=100.00 E-value=3.4e-48 Score=312.01 Aligned_cols=137 Identities=50% Similarity=0.959 Sum_probs=126.1
Q ss_pred CCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCCCcEEE
Q 029621 51 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT 130 (190)
Q Consensus 51 pL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~GG~w~ 130 (190)
||+++|||||+....+.+..+|.++|++|++|+|||+||++|++|++|++|+.+++|+|||+||+||||||+|++||+|+
T Consensus 1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~ 80 (165)
T PF01652_consen 1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWI 80 (165)
T ss_dssp EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEE
T ss_pred CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEE
Confidence 79999999999655555568999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCC---ChHHHHHHHHHHHhcCCCCCC-CCeeeEEEEEcCCCcEEEEecCCCCChhhh
Q 029621 131 VIFPKG---KSDTSWLYTLLAMIGEQFDHG-DEICGAVVNVRARQEKISLWTKNASNEAAQ 187 (190)
Q Consensus 131 i~~~k~---~~d~~We~lll~~IGe~f~~~-~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~ 187 (190)
|++++. .++++|++|||++|||+|... ++||||++|+|++.++|+||++++++++.+
T Consensus 81 i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~ 141 (165)
T PF01652_consen 81 IRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQ 141 (165)
T ss_dssp EEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHH
T ss_pred EEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCHHHH
Confidence 999998 899999999999999999865 899999999999999999999999887554
No 4
>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-45 Score=295.03 Aligned_cols=144 Identities=41% Similarity=0.797 Sum_probs=137.2
Q ss_pred CCCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCC
Q 029621 45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA 124 (190)
Q Consensus 45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~ 124 (190)
...+.|||++..+|||.....+...++|++++++|++|+|||+||++|.|+++|+.|+..+++||||+||+|+|||++|.
T Consensus 25 ~~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~aN~ 104 (208)
T KOG1669|consen 25 LMDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKANC 104 (208)
T ss_pred CCCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcCCC
Confidence 45678999999999999877666688999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621 125 NGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQV 188 (190)
Q Consensus 125 ~GG~w~i~~~k~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~ 188 (190)
|||+|+|+++|+.+.++||+||++++||+|..+++|||+|+|+|.++++||||++++++.+++.
T Consensus 105 nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta~~~ 168 (208)
T KOG1669|consen 105 NGGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTADTG 168 (208)
T ss_pred CCCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999988753
No 5
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-40 Score=269.43 Aligned_cols=141 Identities=40% Similarity=0.800 Sum_probs=129.8
Q ss_pred CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (190)
Q Consensus 46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~ 125 (190)
....|||+..|||||..+... +.+.|.+.|+.|++|+|||+||+++++|+.++.||..++|++||+||+|+|||++|.+
T Consensus 33 f~~~hpl~~~wtlw~l~p~e~-g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~ 111 (217)
T COG5053 33 FMNKHPLAFHWTLWFLKPPED-GLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMN 111 (217)
T ss_pred HhhcCccccceEEEEecCCcc-chhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccCC
Confidence 557899999999999887643 3455999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCC---ChHHHHHHHHHHHhcCCCCC-CCCeeeEEEEEcCCCcEEEEecCCCCChhhh
Q 029621 126 GGKWTVIFPKG---KSDTSWLYTLLAMIGEQFDH-GDEICGAVVNVRARQEKISLWTKNASNEAAQ 187 (190)
Q Consensus 126 GG~w~i~~~k~---~~d~~We~lll~~IGe~f~~-~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~ 187 (190)
||+|++.++.. ..+++|..+++++||++|+. +.+|||||++.|++++||+||++++.+.+..
T Consensus 112 Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl 177 (217)
T COG5053 112 GGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVL 177 (217)
T ss_pred CCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHHH
Confidence 99999999874 37899999999999999984 7789999999999999999999999888764
No 6
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=89.36 E-value=1.1 Score=38.83 Aligned_cols=60 Identities=18% Similarity=0.350 Sum_probs=41.5
Q ss_pred CCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCCeeeEEEEE------cCCCcEEEEecCCCCChhhhh
Q 029621 124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV------RARQEKISLWTKNASNEAAQV 188 (190)
Q Consensus 124 ~~GG~w~i~~~k~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~------R~~~~rIsIW~~~~~~~~~~~ 188 (190)
.-.|+|+|-+++..+|.+|..+.-+++.+.|. +++-|+. ..+...|.|.+.+..|.++++
T Consensus 148 v~sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV~ 213 (243)
T PF08939_consen 148 VTSGKWMLFPPPDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDVM 213 (243)
T ss_dssp ---EEEEEEE-TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHHH
T ss_pred cccceeEEEcCHHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHHH
Confidence 44899999999999999999999999987773 2444444 123467999999999998875
No 7
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=51.40 E-value=8.3 Score=27.44 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=16.9
Q ss_pred ccccCcccceeeeecCCCccCCCC
Q 029621 97 HPSKLAVGADFYCFKNKIEPKWED 120 (190)
Q Consensus 97 ~ps~L~~~~~~~lFK~gI~P~WED 120 (190)
+.-.|..|+.+|+||+|-.-| ||
T Consensus 8 ksi~LkDGstvyiFKDGKMam-Ed 30 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM-ED 30 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE-EE
T ss_pred eeEecCCCCEEEEEcCCceeh-hh
Confidence 334688999999999997654 54
No 8
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=50.33 E-value=9.4 Score=25.50 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=22.5
Q ss_pred eeeccHHHHHhhcccccccccCcccceeeeecC
Q 029621 80 YTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKN 112 (190)
Q Consensus 80 ~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~ 112 (190)
-++-|.++||+-|..-.-.+ ...++.+||+
T Consensus 21 Eti~s~ed~w~~Y~~WqLv~---q~~~~ivFrk 50 (51)
T PF08977_consen 21 ETIWSMEDFWAKYKGWQLVD---QDDDQIVFRK 50 (51)
T ss_dssp EEEEEHHHHHHHSTTSEEEE---EETTEEEEEE
T ss_pred eeeccHHHHHHhhcCcEEEE---ccCCEEEEEc
Confidence 57889999999999875443 3446778875
No 9
>PHA02744 hypothetical protein; Provisional
Probab=34.52 E-value=29 Score=25.67 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=32.4
Q ss_pred EEEEecCC---ChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcC-----CCcEEEEecCCCCChhh
Q 029621 129 WTVIFPKG---KSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA-----RQEKISLWTKNASNEAA 186 (190)
Q Consensus 129 w~i~~~k~---~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~-----~~~rIsIW~~~~~~~~~ 186 (190)
+++-+++. ....--+.+++.-+-........|.|+++++.. ......+|+|..+|..+
T Consensus 9 y~CiVPkEW~~y~~~~Le~~i~~s~~~~~k~~~~i~Ga~~~i~gVTAkL~y~~~~~WmrK~~D~~~ 74 (88)
T PHA02744 9 YICIAPKEWEEYKRKDLEKLILDSCKDHRKKTTCIHGANTNIAGVSTKLEYNDLKLWLKKQDDISA 74 (88)
T ss_pred EEEEecHHHhccCHHHHHHHHHHHHHHHHHhhceeccceEEEccEEEEEEEcCCccceeEcCCCCC
Confidence 44455663 223334444443333333334567787766544 34677899998887654
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=34.23 E-value=67 Score=26.92 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCCC-CCeeeEEE-----EEcCCCcEEEEec
Q 029621 144 YTLLAMIGEQFDHG-DEICGAVV-----NVRARQEKISLWT 178 (190)
Q Consensus 144 ~lll~~IGe~f~~~-~~I~Giv~-----s~R~~~~rIsIW~ 178 (190)
.|++.++...|+.. .--.||-| +++.+..+++||-
T Consensus 26 SLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWD 66 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWD 66 (209)
T ss_pred HHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEe
Confidence 57888999999853 33478855 4677889999993
No 11
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=28.86 E-value=47 Score=28.27 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=23.6
Q ss_pred eeeecCCCccC---C---CCCCCCCCcEEEEEecC
Q 029621 107 FYCFKNKIEPK---W---EDPVCANGGKWTVIFPK 135 (190)
Q Consensus 107 ~~lFK~gI~P~---W---EDp~N~~GG~w~i~~~k 135 (190)
+++++.-+.|| | ||--|.+||.+++++-+
T Consensus 91 M~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~ 125 (225)
T COG3822 91 MHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWN 125 (225)
T ss_pred EEeccCCcCcccccccchhhhhhcCCceEEEEEec
Confidence 56777778886 4 88899999999998744
No 12
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=26.77 E-value=47 Score=19.57 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=15.5
Q ss_pred eeeeecCCCccCCCCCCCCCCcEEE
Q 029621 106 DFYCFKNKIEPKWEDPVCANGGKWT 130 (190)
Q Consensus 106 ~~~lFK~gI~P~WEDp~N~~GG~w~ 130 (190)
.-.+||.||.| .|..|-.|.
T Consensus 10 G~v~~R~Gis~-----~~P~G~~W~ 29 (32)
T PF06462_consen 10 GSVYFRTGISP-----SNPEGTSWE 29 (32)
T ss_pred CCEEEECcCCC-----CCCCCCCcE
Confidence 35689999998 477787775
No 13
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=21.08 E-value=1.6e+02 Score=20.53 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHhcCCCC---CCCCeeeEEEEEcCCCcEEEEe
Q 029621 137 KSDTSWLYTLLAMIGEQFD---HGDEICGAVVNVRARQEKISLW 177 (190)
Q Consensus 137 ~~d~~We~lll~~IGe~f~---~~~~I~Giv~s~R~~~~rIsIW 177 (190)
..|-++-..+.++||-.+. ..+.|-|+...+++....|+.+
T Consensus 7 ~vdpyvyq~lq~liG~~vvV~T~~g~v~G~L~~V~pDhIvl~~~ 50 (66)
T PF10842_consen 7 LVDPYVYQTLQSLIGQRVVVQTTRGSVRGILVDVKPDHIVLEEN 50 (66)
T ss_pred ccCHHHHHHHHHhcCCEEEEEEcCCcEEEEEEeecCCEEEEEeC
Confidence 3577888999999998764 4567999999999988888776
Done!