Query 029621
Match_columns 190
No_of_seqs 129 out of 651
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 02:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2idr_A Eukaryotic translation 100.0 3.6E-54 1.2E-58 351.4 13.6 140 49-188 1-140 (177)
2 2jgb_A Eukaryotic translation 100.0 1.4E-52 4.8E-57 346.7 14.6 144 45-188 10-155 (195)
3 1ap8_A Translation initiation 100.0 6.9E-52 2.4E-56 346.8 18.0 141 45-187 32-175 (213)
4 1l8b_A Eukaryotic translation 100.0 3.9E-52 1.3E-56 342.7 12.3 140 46-188 6-150 (190)
5 1ipb_A Eukaryotic translation 100.0 7.2E-52 2.5E-56 347.6 13.0 140 46-188 33-177 (217)
6 3m94_A Translation initiation 100.0 4E-51 1.4E-55 336.8 14.1 138 48-188 1-143 (189)
7 3hxi_A Eukaryotic translation 100.0 1.6E-51 5.6E-56 339.1 10.4 140 46-188 6-149 (189)
8 4axg_A Eukaryotic translation 100.0 1.1E-49 3.7E-54 340.2 13.9 141 45-188 65-208 (248)
9 1ztp_A Basophilic leukemia exp 98.8 7.9E-09 2.7E-13 87.8 6.0 63 121-189 121-187 (251)
10 2k0q_A Putative uncharacterize 49.8 6.4 0.00022 27.1 1.4 23 97-120 8-30 (74)
11 1nrp_R Receptor based peptide 27.2 20 0.0007 19.4 0.8 12 112-123 13-24 (26)
12 1nro_R Receptor based peptide 23.0 25 0.00085 19.2 0.6 11 112-122 13-23 (27)
No 1
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=100.00 E-value=3.6e-54 Score=351.40 Aligned_cols=140 Identities=74% Similarity=1.349 Sum_probs=133.8
Q ss_pred CCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCCCcE
Q 029621 49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK 128 (190)
Q Consensus 49 ~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~GG~ 128 (190)
+|||+++|||||+.+..+.+..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++|||
T Consensus 1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~ 80 (177)
T 2idr_A 1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGK 80 (177)
T ss_dssp CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEE
T ss_pred CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCE
Confidence 59999999999998876566789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621 129 WTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQV 188 (190)
Q Consensus 129 w~i~~~k~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~ 188 (190)
|+|+++|..+|.+|++|||++|||+|+.+++|||||+|+|+++++|+||+++++++++++
T Consensus 81 w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~ 140 (177)
T 2idr_A 81 WTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQI 140 (177)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCHHHHH
T ss_pred EEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCHHHHH
Confidence 999999999999999999999999999889999999999999999999999999887653
No 2
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=100.00 E-value=1.4e-52 Score=346.71 Aligned_cols=144 Identities=40% Similarity=0.804 Sum_probs=134.0
Q ss_pred CCCCCCCCCcceEEEEECCCC--cccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCC
Q 029621 45 VMQQPHPLEHSWTFWFDNPFA--KSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV 122 (190)
Q Consensus 45 ~~~~~hpL~~~Wt~W~~~~~~--~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~ 122 (190)
.....|||+++|||||+.... +.+..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus 10 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~ 89 (195)
T 2jgb_A 10 PGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA 89 (195)
T ss_dssp CCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTT
T ss_pred CCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCC
Confidence 356789999999999997532 234678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621 123 CANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQV 188 (190)
Q Consensus 123 N~~GG~w~i~~~k~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~ 188 (190)
|++||||+|+++|..+|.+|++|||++|||+|+.+++|||||+|+|.++++|+||++++++++++.
T Consensus 90 N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~ 155 (195)
T 2jgb_A 90 NKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTA 155 (195)
T ss_dssp TTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCHHHHH
T ss_pred CCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887643
No 3
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=100.00 E-value=6.9e-52 Score=346.84 Aligned_cols=141 Identities=38% Similarity=0.853 Sum_probs=129.9
Q ss_pred CCCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCC
Q 029621 45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA 124 (190)
Q Consensus 45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~ 124 (190)
.....|||+++|||||+.+.. .+..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus 32 ~~~~~hpL~~~Wt~W~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~ 110 (213)
T 1ap8_A 32 HFDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANA 110 (213)
T ss_dssp CCCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTT
T ss_pred CCCCccccCCcEEEEEEcCCc-ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCC
Confidence 355899999999999998865 3467899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEec-C-CChHHHHHHHHHHHhcCCCCCCC-CeeeEEEEEcCCCcEEEEecCCCCChhhh
Q 029621 125 NGGKWTVIFP-K-GKSDTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQ 187 (190)
Q Consensus 125 ~GG~w~i~~~-k-~~~d~~We~lll~~IGe~f~~~~-~I~Giv~s~R~~~~rIsIW~~~~~~~~~~ 187 (190)
+||||+|+++ + ..+|.+|++|||++|||+|+..+ +|||||+|+|++.++|+||++++ +++++
T Consensus 111 ~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~~ 175 (213)
T 1ap8_A 111 KGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE-DKEPL 175 (213)
T ss_dssp TSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS-CHHHH
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC-CHHHH
Confidence 9999999984 3 47899999999999999998766 89999999999999999999999 66654
No 4
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=100.00 E-value=3.9e-52 Score=342.75 Aligned_cols=140 Identities=44% Similarity=0.884 Sum_probs=128.6
Q ss_pred CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (190)
Q Consensus 46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~ 125 (190)
....|||+++|||||+.+.. ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus 6 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~ 82 (190)
T 1l8b_A 6 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR 82 (190)
T ss_dssp ---CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTT
T ss_pred ccccCCCCCeEEEEEEcCCC---ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence 45789999999999998763 468999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCC----hHHHHHHHHHHHhcCCC-CCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621 126 GGKWTVIFPKGK----SDTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQV 188 (190)
Q Consensus 126 GG~w~i~~~k~~----~d~~We~lll~~IGe~f-~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~ 188 (190)
||||+|+++|.. +|.+|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++++.
T Consensus 83 GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~ 150 (190)
T 1l8b_A 83 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVT 150 (190)
T ss_dssp CEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHH
T ss_pred CCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHHH
Confidence 999999998753 59999999999999999 5688999999999999999999999999887643
No 5
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=100.00 E-value=7.2e-52 Score=347.58 Aligned_cols=140 Identities=44% Similarity=0.885 Sum_probs=130.6
Q ss_pred CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (190)
Q Consensus 46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~ 125 (190)
....|||+++|||||+.+.. ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus 33 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~ 109 (217)
T 1ipb_A 33 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR 109 (217)
T ss_dssp GTSCCEEEEEEEEEEECCCT---TSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTT
T ss_pred cccCCCCCCeEEEEEEeCCc---ccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence 45689999999999998753 578999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCC----hHHHHHHHHHHHhcCCC-CCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621 126 GGKWTVIFPKGK----SDTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQV 188 (190)
Q Consensus 126 GG~w~i~~~k~~----~d~~We~lll~~IGe~f-~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~ 188 (190)
||||+|+++|.. +|.+|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++++.
T Consensus 110 GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~ 177 (217)
T 1ipb_A 110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVT 177 (217)
T ss_dssp CEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHHH
T ss_pred CCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCHHHHH
Confidence 999999999864 59999999999999999 6788999999999999999999999999887643
No 6
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=100.00 E-value=4e-51 Score=336.76 Aligned_cols=138 Identities=42% Similarity=0.918 Sum_probs=128.7
Q ss_pred CCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCCCc
Q 029621 48 QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG 127 (190)
Q Consensus 48 ~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~GG 127 (190)
+.|||+++|||||+.+. ...+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus 1 ~~HpL~~~Wt~W~~~~~---~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GG 77 (189)
T 3m94_A 1 MRHPLQCHWALWYLKAD---RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGG 77 (189)
T ss_dssp CCCEEEEEEEEEEECCC---SSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred CCCCCCCcEEEEEECCC---CccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCC
Confidence 47999999999998764 357899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC----ChHHHHHHHHHHHhcCCCC-CCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621 128 KWTVIFPKG----KSDTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQV 188 (190)
Q Consensus 128 ~w~i~~~k~----~~d~~We~lll~~IGe~f~-~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~ 188 (190)
+|+|+++|. .+|.+|++|||++|||+|+ .+++|||||+|+|+++++|+||++++++++++.
T Consensus 78 kw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~ 143 (189)
T 3m94_A 78 RWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNL 143 (189)
T ss_dssp EEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHHH
T ss_pred EEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCHHHHH
Confidence 999999875 3699999999999999995 688999999999999999999999999887653
No 7
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=100.00 E-value=1.6e-51 Score=339.07 Aligned_cols=140 Identities=34% Similarity=0.764 Sum_probs=130.3
Q ss_pred CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (190)
Q Consensus 46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~ 125 (190)
+...|||+++|||||+.+.. ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus 6 ~~~~HpL~~~Wt~W~~~~~~---~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~~ 82 (189)
T 3hxi_A 6 PEFPHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNEN 82 (189)
T ss_dssp -CCCCEEEEEEEEEEECCCT---TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHHT
T ss_pred CCccCCCCCeEEEEEECCCC---ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCCC
Confidence 56789999999999998753 368999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCC-ChHHHHHHHHHHHhcCCC-CCCCC--eeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621 126 GGKWTVIFPKG-KSDTSWLYTLLAMIGEQF-DHGDE--ICGAVVNVRARQEKISLWTKNASNEAAQV 188 (190)
Q Consensus 126 GG~w~i~~~k~-~~d~~We~lll~~IGe~f-~~~~~--I~Giv~s~R~~~~rIsIW~~~~~~~~~~~ 188 (190)
||||+|+++|. .+|.+|++|||++|||+| +.+++ |||||+|+|+++++|+||+++++++++++
T Consensus 83 GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~ 149 (189)
T 3hxi_A 83 GGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETIL 149 (189)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHHH
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHHH
Confidence 99999999997 589999999999999999 55667 99999999999999999999999887654
No 8
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-49 Score=340.17 Aligned_cols=141 Identities=43% Similarity=0.907 Sum_probs=130.7
Q ss_pred CCCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCC
Q 029621 45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA 124 (190)
Q Consensus 45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~ 124 (190)
.....|||+++|||||+.+.. ..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus 65 ~~~~kHpL~~~WtlW~~~~~~---~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N~ 141 (248)
T 4axg_A 65 EHLYKHPLMNVWTLWYLENDR---SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANK 141 (248)
T ss_dssp -CCCCCEEEEEEEEEEESCSC---CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTTT
T ss_pred ccccCCCCCCeEEEEEeeCCC---ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccCC
Confidence 455789999999999997653 46799999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCC---hHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621 125 NGGKWTVIFPKGK---SDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQV 188 (190)
Q Consensus 125 ~GG~w~i~~~k~~---~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~ 188 (190)
+||+|+|++.|.. +|.+|++|||+||||+|+.+++|||||+|+|+++++|+||++++++++.++
T Consensus 142 ~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~~ 208 (248)
T 4axg_A 142 QGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAAL 208 (248)
T ss_dssp TCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCHHHHH
T ss_pred CccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCHHHHH
Confidence 9999999998754 589999999999999999889999999999999999999999999987653
No 9
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=98.76 E-value=7.9e-09 Score=87.85 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=56.3
Q ss_pred CCCCCCcEEEEEecC-CChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCC---CcEEEEecCCCCChhhhhc
Q 029621 121 PVCANGGKWTVIFPK-GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRAR---QEKISLWTKNASNEAAQVT 189 (190)
Q Consensus 121 p~N~~GG~w~i~~~k-~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~---~~rIsIW~~~~~~~~~~~~ 189 (190)
+.|..||||+|.+.+ ..+|.+|..+++++|+++ +||++|+.|.+ ..+|+||+++..+.+++++
T Consensus 121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV~R 187 (251)
T 1ztp_A 121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLE 187 (251)
T ss_dssp HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHHHH
T ss_pred HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHHHH
Confidence 458999999999988 679999999999999654 49999999986 7999999999999998763
No 10
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=49.82 E-value=6.4 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=17.5
Q ss_pred ccccCcccceeeeecCCCccCCCC
Q 029621 97 HPSKLAVGADFYCFKNKIEPKWED 120 (190)
Q Consensus 97 ~ps~L~~~~~~~lFK~gI~P~WED 120 (190)
+.-.|..|+.+|+||+|-.-| ||
T Consensus 8 k~v~LkDGstvyiFKDGKMam-Ed 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGM-EN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEE-EC
T ss_pred eeEecCCCcEEEEEcCCceeh-hh
Confidence 334688999999999997653 44
No 11
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=27.21 E-value=20 Score=19.37 Aligned_cols=12 Identities=50% Similarity=0.902 Sum_probs=9.1
Q ss_pred CCCccCCCCCCC
Q 029621 112 NKIEPKWEDPVC 123 (190)
Q Consensus 112 ~gI~P~WEDp~N 123 (190)
+..+|.|||...
T Consensus 13 dkyepfwedee~ 24 (26)
T 1nrp_R 13 DKYEPFWEDEEX 24 (26)
T ss_pred cccCcccccccc
Confidence 457899999753
No 12
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=22.98 E-value=25 Score=19.18 Aligned_cols=11 Identities=55% Similarity=0.990 Sum_probs=8.6
Q ss_pred CCCccCCCCCC
Q 029621 112 NKIEPKWEDPV 122 (190)
Q Consensus 112 ~gI~P~WEDp~ 122 (190)
+..+|.|||..
T Consensus 13 dkyepfwedee 23 (27)
T 1nro_R 13 DKYEPFWEDEE 23 (27)
T ss_pred cccCccccchh
Confidence 45689999974
Done!