BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029622
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STZ2|SELT_ARATH SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2
Length = 209
Score = 261 bits (668), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/186 (68%), Positives = 151/186 (81%), Gaps = 10/186 (5%)
Query: 1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
MD+ ++LLGLP+FLLCSDL NLFTPPPP H PP SE L DFP+QK G
Sbjct: 1 MDKTQLILLGLPIFLLCSDLFNLFTPPPP------KSQHQSPPSISETL--DFPAQKSTG 52
Query: 61 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120
+GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAKVVP Q
Sbjct: 53 -VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111
Query: 121 IGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVY 179
+GVIG+++ GEQIFPM+G+ PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVS 171
Query: 180 CNDDLV 185
CN +LV
Sbjct: 172 CNGELV 177
>sp|Q9BN19|HSP6_HETGL Putative esophageal gland cell secretory protein 6 OS=Heterodera
glycines GN=HSP6 PE=2 SV=1
Length = 244
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 68/118 (57%)
Query: 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIV 127
V +FC SC YR ++L ++PGID+ NYPP + + + A+V+ V+I +I V
Sbjct: 83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCV 142
Query: 128 VAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLV 185
V+G FP LG+ P ++ + +NR + +L N ++ LQS+GAFE+Y + +
Sbjct: 143 VSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERI 200
>sp|Q19892|SELT2_CAEEL Putative selT-like protein F28H7.4 OS=Caenorhabditis elegans
GN=F28H7.4 PE=3 SV=2
Length = 216
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%)
Query: 1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFP------ 54
M R +++GL F + S + ++F PP + + + + SE T P
Sbjct: 1 MSRSGAIIIGL--FFIAS-IFDVFRAEKEPPAEDSRLEDY---LSSELETTAIPTVVNEN 54
Query: 55 --SQKIVGGIGYGS---TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPK 109
SQ +V G+ + I +C SC Y+ + ++PG+ + N+ P K
Sbjct: 55 SHSQDVVDS-GFSKDLPKLTILYCVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWK 113
Query: 110 RLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSF 169
LA++V +IG+I IV+ G F +G P + NRF ++IGN +S
Sbjct: 114 GCLAQIVGVAKIGLIAIVITGSNPFEYIGFGYPQILQTAHYNRFSYSLLVFMIGNLFEST 173
Query: 170 LQSSGAFEVYCNDDLV 185
L S+GAFE++ D +
Sbjct: 174 LSSTGAFEIFLGDKQI 189
>sp|Q9VMV6|SELT_DROME SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1
Length = 198
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%)
Query: 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGI 126
T+ +C SC YR +L ++P I V NY PP L+K++ A++I +I
Sbjct: 43 TMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVS 102
Query: 127 VVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCND 182
VV+ F LG+ P W+ ++AN+ + + +GN L++ L SSGAFE+ ND
Sbjct: 103 VVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLND 158
>sp|Q9U3N5|SELT1_CAEEL Putative selT-like protein C35C5.3 OS=Caenorhabditis elegans
GN=C35C5.3 PE=3 SV=2
Length = 247
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 25/207 (12%)
Query: 1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
M R + ++G+ F+ D+L T +H H K +E + SQ
Sbjct: 1 MSRFGVFIIGVLFFMSVCDVLR--TVSAEEHSHDENHVHEKDDFEAE-FGDETDSQSFSQ 57
Query: 61 GIGYGS----------------------TVNINFCASCSYRGTAITMKRMLETQFPGIDV 98
G T+ I +C SC Y+ + ++P + +
Sbjct: 58 GTEEDHIEVREQSSFVKPTAVHHAKDLPTLRIFYCVSCGYKQAFDQFTTFAKEKYPNMPI 117
Query: 99 VLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIAS 158
AN+ P L K +A+ + V++ V+ +V+ G F G+ P N+ S
Sbjct: 118 EGANFAPVLWKAYVAQALSFVKMAVLVLVLGGINPFERFGLGYPQILQHAHGNKMSSCML 177
Query: 159 TWLIGNFLQSFLQSSGAFEVYCNDDLV 185
+++GN ++ L S+GAFEVY ++ +
Sbjct: 178 VFMLGNLVEQSLISTGAFEVYLGNEQI 204
>sp|Q502K9|SELT2_DANRE Selenoprotein T2 OS=Danio rerio GN=selt2 PE=2 SV=3
Length = 210
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 46 SENLTPDFPSQKIVGGIGY-GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104
EN PD +Q+ Y G + +C S Y R + +P I + NYP
Sbjct: 34 QENTGPDINTQRQNKHTFYTGPVLKFQYCISUGYSKVFQEYSRSISQLYPDIRIEGDNYP 93
Query: 105 PPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGN 164
P + L + ++ I ++V G+ F M GM P + + N+ S + I N
Sbjct: 94 PKPINKYLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWGQENKIFSCLMAFFISN 153
Query: 165 FLQSFLQSSGAFEVYCND 182
L++ S+GAFE+ ND
Sbjct: 154 MLETHFLSTGAFEITLND 171
>sp|Q6PBD1|SELT_XENTR Selenoprotein T OS=Xenopus tropicalis GN=selt PE=2 SV=3
Length = 201
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%)
Query: 53 FPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112
PS+K+ G + C S YR R++ ++P I + NY P R +
Sbjct: 31 LPSKKLKMQYTAGPLLKFQICVSUGYRRVFEDYMRVISQRYPDIRIEGENYLPHPIYRNI 90
Query: 113 AKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQS 172
A + ++ +IG+++AG+ F GM P + + N+ + + + N +++ S
Sbjct: 91 ASFLSVFKLVLIGLIIAGKDPFAFFGMQAPSVWQWGQENKVYACMMVFFVSNMIENQCMS 150
Query: 173 SGAFEVYCND 182
+GAFE+ ND
Sbjct: 151 TGAFEITLND 160
>sp|Q5ZJN8|SELT_CHICK Selenoprotein T OS=Gallus gallus GN=SELT PE=2 SV=3
Length = 199
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
P++K+ G + C S YR R++ ++P I + NY P R +A
Sbjct: 31 PAKKLRMAYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 90
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 91 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 150
Query: 174 GAFEVYCND 182
GAFE+ ND
Sbjct: 151 GAFEITLND 159
>sp|Q1H5H1|SELT_RAT Selenoprotein T OS=Rattus norvegicus GN=Selt PE=2 SV=2
Length = 195
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
PS+++ G + C S YR R++ ++P I + NY P R +A
Sbjct: 27 PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146
Query: 174 GAFEVYCND 182
GAFE+ ND
Sbjct: 147 GAFEITLND 155
>sp|P62342|SELT_MOUSE Selenoprotein T OS=Mus musculus GN=Selt PE=2 SV=2
Length = 195
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
PS+++ G + C S YR R++ ++P I + NY P R +A
Sbjct: 27 PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146
Query: 174 GAFEVYCND 182
GAFE+ ND
Sbjct: 147 GAFEITLND 155
>sp|P62341|SELT_HUMAN Selenoprotein T OS=Homo sapiens GN=SELT PE=2 SV=2
Length = 195
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
PS+++ G + C S YR R++ ++P I + NY P R +A
Sbjct: 27 PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146
Query: 174 GAFEVYCND 182
GAFE+ ND
Sbjct: 147 GAFEITLND 155
>sp|A6QP01|SELT_BOVIN Selenoprotein T OS=Bos taurus GN=SELT PE=2 SV=2
Length = 195
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 59/129 (45%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
P +++ G + C S YR R++ ++P I + NY P R +A
Sbjct: 27 PGKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146
Query: 174 GAFEVYCND 182
GAFE+ ND
Sbjct: 147 GAFEITLND 155
>sp|Q6PHY8|SELTB_DANRE Selenoprotein T1b OS=Danio rerio GN=selt1b PE=2 SV=3
Length = 193
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%)
Query: 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIV 127
+ C S YR R+L ++P I + N+ P R +A + ++ VIG++
Sbjct: 39 LKFQICVSUGYRRVFEEYTRVLTQRYPDIRIEGENFLPQPLYRHIASFLSVFKLVVIGLI 98
Query: 128 VAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCND 182
+ G+ F L + P + + N+ + + + N +++ S+GAFEV ND
Sbjct: 99 ILGKNPFTYLHIETPGIWLWAQENKIYACTMVFFLSNMIENQCMSTGAFEVTLND 153
>sp|Q802F2|SELTA_DANRE Selenoprotein T1a OS=Danio rerio GN=selt1a PE=2 SV=3
Length = 193
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 57/127 (44%)
Query: 56 QKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115
+K+ G + C S Y+ + L ++P I + NY P R +A
Sbjct: 27 KKMKMQFATGPLLKFQICVSUGYKRVFEEYTQALYQRYPDIRIEGENYLPLPLYRHIASF 86
Query: 116 VPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGA 175
+ ++ +IG+++ G+ F + GM P + + N+ + + N +++ S+GA
Sbjct: 87 LSMFKLLLIGVIILGKDPFALCGMQAPGIWVWSQENKIYACMMVFFFSNMIENQCMSTGA 146
Query: 176 FEVYCND 182
FE+ ND
Sbjct: 147 FEITLND 153
>sp|O14787|TNPO2_HUMAN Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3
Length = 897
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 31/123 (25%)
Query: 43 PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLAN 102
PI NL P+F I+ C + ++ I M+ E Q P + +VL N
Sbjct: 708 PILGTNLNPEF----------------ISVCNNATWAIGEICMQMGAEMQ-PYVQMVLNN 750
Query: 103 Y-----PPPLPKRLLAKV--------VPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLR 149
P PK LL +PA+ IG +G V E + PML PW SLR
Sbjct: 751 LVEIINRPNTPKTLLENTGRLTSPSAIPAITIGRLGYVCPQE-VAPMLQQFIRPWCTSLR 809
Query: 150 ANR 152
R
Sbjct: 810 NIR 812
>sp|Q99LG2|TNPO2_MOUSE Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1
Length = 887
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 47/115 (40%), Gaps = 25/115 (21%)
Query: 43 PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLAN 102
PI NL P+F I+ C + ++ I M+ E Q P + +VL N
Sbjct: 708 PILGTNLNPEF----------------ISVCNNATWAIGEICMQMGAEMQ-PYVQMVLNN 750
Query: 103 Y-----PPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANR 152
P PK LL A+ IG +G V E + PML PW SLR R
Sbjct: 751 LVEIINRPNTPKTLLENT--AITIGRLGYVCPQE-VAPMLQQFIRPWCTSLRNIR 802
>sp|B8IHZ7|RSMG_METNO Ribosomal RNA small subunit methyltransferase G OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=rsmG PE=3 SV=1
Length = 212
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 92 QFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYY 146
+F G++VV A PLP+ LLA P ++ G IG+ G + L W +
Sbjct: 133 RFTGVEVVCARALAPLPQ-LLAWTAPLLKSGTIGLFPKGREAQSELTAARETWTF 186
>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2
Length = 898
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 31/130 (23%)
Query: 34 SASHHHHKP------PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKR 87
A H KP PI NL P+F I+ C + ++ I+++
Sbjct: 704 KACFQHVKPCIADFMPILGTNLNPEF----------------ISVCNNATWAIGEISIQM 747
Query: 88 MLETQFPGIDVVLANY-----PPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142
+E Q P I +VL P PK LL A+ IG +G V E + PML
Sbjct: 748 GIEMQ-PYIPMVLHQLVEIINRPNTPKTLLENT--AITIGRLGYVCPQE-VAPMLQQFIR 803
Query: 143 PWYYSLRANR 152
PW SLR R
Sbjct: 804 PWCTSLRNIR 813
>sp|Q92973|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2
Length = 898
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 31/130 (23%)
Query: 34 SASHHHHKP------PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKR 87
A H KP PI NL P+F I+ C + ++ I+++
Sbjct: 704 KACFQHVKPCIADFMPILGTNLNPEF----------------ISVCNNATWAIGEISIQM 747
Query: 88 MLETQFPGIDVVLANY-----PPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142
+E Q P I +VL P PK LL A+ IG +G V E + PML
Sbjct: 748 GIEMQ-PYIPMVLHQLVEIINRPNTPKTLLENT--AITIGRLGYVCPQE-VAPMLQQFIR 803
Query: 143 PWYYSLRANR 152
PW SLR R
Sbjct: 804 PWCTSLRNIR 813
>sp|Q148C8|MIEN1_BOVIN Migration and invasion enhancer 1 OS=Bos taurus GN=MIEN1 PE=3
SV=1
Length = 115
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 63 GYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDV 98
G+G + + +C C + T + + ++ Q+PGI++
Sbjct: 20 GHGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEI 55
>sp|Q6DCV1|AB1IP_XENLA Amyloid beta A4 precursor protein-binding family B member
1-interacting protein OS=Xenopus laevis GN=apbb1ip PE=2
SV=2
Length = 653
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 22 NLFTPPPPPPPKSASHHHHKPPIPS 46
N T P PP S S+H H PP+PS
Sbjct: 83 NKSTAPFPPADASNSYHFHPPPMPS 107
>sp|Q8BFY9|TNPO1_MOUSE Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2
Length = 898
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 31/130 (23%)
Query: 34 SASHHHHKP------PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKR 87
A H KP PI NL P+F I+ C + ++ I+++
Sbjct: 704 KACFQHVKPCIADFMPILGTNLNPEF----------------ISVCNNATWAIGEISIQM 747
Query: 88 MLETQFPGIDVVLANY-----PPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142
+E Q P I +VL P PK LL A+ IG +G V E + PML
Sbjct: 748 GIEMQ-PYIPMVLHQLVEIINRPNTPKTLLENT--AITIGRLGYVCPQE-VAPMLQQFIR 803
Query: 143 PWYYSLRANR 152
PW SLR R
Sbjct: 804 PWCTSLRNIR 813
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2
Length = 1213
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 29 PPPPKSASHHHHKPPIPSENLTPDFP 54
PPPP HHHH P P P+ P
Sbjct: 1110 PPPPNLHGHHHHLPFAPGTIPPPNLP 1135
>sp|B0UJI7|RSMG_METS4 Ribosomal RNA small subunit methyltransferase G OS=Methylobacterium
sp. (strain 4-46) GN=rsmG PE=3 SV=1
Length = 212
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 93 FPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYY 146
F G+DVV A PLP+ L+A P ++ G IG+ G + L W +
Sbjct: 134 FRGVDVVCARALAPLPQ-LIAWTAPLLKSGTIGLFPKGREAQSELTAAREKWTF 186
>sp|P59797|SELV_HUMAN Selenoprotein V OS=Homo sapiens GN=SELV PE=2 SV=2
Length = 346
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 47 ENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPG 95
+N T FPS + + + +C SY I +K+ LE QFP
Sbjct: 244 QNCTETFPSSSENFALDKRVLIRVTYCGLUSYSLRYILLKKSLEQQFPN 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,488,099
Number of Sequences: 539616
Number of extensions: 3696975
Number of successful extensions: 29508
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 26794
Number of HSP's gapped (non-prelim): 2099
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)