Query 029622
Match_columns 190
No_of_seqs 121 out of 134
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 15:52:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3286 Selenoprotein T [Gener 100.0 4.4E-70 9.4E-75 460.5 14.1 188 1-188 1-192 (226)
2 PF10262 Rdx: Rdx family; Int 99.7 2.3E-17 4.9E-22 119.0 6.4 35 66-100 1-37 (76)
3 TIGR02174 CXXU_selWTH selT/sel 99.7 2.2E-16 4.9E-21 113.4 6.6 38 68-105 1-38 (72)
4 COG3526 Uncharacterized protei 89.0 0.31 6.7E-06 37.3 2.2 16 173-188 47-62 (99)
5 TIGR02861 SASP_H small acid-so 65.8 6.4 0.00014 27.7 2.6 17 172-188 12-28 (58)
6 PRK13728 conjugal transfer pro 64.7 61 0.0013 27.3 8.7 36 68-104 73-108 (181)
7 PF07315 DUF1462: Protein of u 59.9 7.4 0.00016 30.0 2.2 26 72-97 8-37 (93)
8 PF08141 SspH: Small acid-solu 59.5 9 0.0002 26.9 2.4 20 170-189 10-29 (58)
9 KOG2550 IMP dehydrogenase/GMP 58.1 9.6 0.00021 36.8 3.0 30 73-102 270-299 (503)
10 PF03808 Glyco_tran_WecB: Glyc 55.5 15 0.00032 29.9 3.4 34 69-104 50-83 (172)
11 PF14424 Toxin-deaminase: The 52.0 10 0.00022 30.4 1.9 23 71-99 106-128 (133)
12 TIGR01159 DRP1 density-regulat 51.6 13 0.00029 31.3 2.6 29 68-96 2-37 (173)
13 PF14099 Polysacc_lyase: Polys 48.3 13 0.00028 30.7 2.0 17 172-188 167-183 (224)
14 PF07293 DUF1450: Protein of u 47.2 23 0.0005 26.2 3.0 29 69-99 4-32 (78)
15 PF07800 DUF1644: Protein of u 46.4 15 0.00031 31.0 2.0 27 71-97 110-136 (162)
16 PRK13669 hypothetical protein; 44.2 23 0.00051 26.3 2.6 28 69-98 4-31 (78)
17 PRK03174 sspH acid-soluble spo 43.4 22 0.00048 25.1 2.3 18 170-187 10-27 (59)
18 PF07172 GRP: Glycine rich pro 42.9 23 0.00049 27.0 2.4 22 1-22 1-25 (95)
19 PRK01625 sspH acid-soluble spo 42.4 24 0.00051 25.0 2.3 18 170-187 10-27 (59)
20 COG3526 Uncharacterized protei 38.6 29 0.00063 26.7 2.4 29 65-93 5-33 (99)
21 cd03023 DsbA_Com1_like DsbA fa 35.5 95 0.0021 22.9 4.9 41 65-105 6-46 (154)
22 COG4837 Uncharacterized protei 34.1 25 0.00054 27.6 1.5 25 72-96 15-43 (106)
23 PF05265 DUF723: Protein of un 33.8 50 0.0011 23.5 2.8 27 79-105 2-31 (60)
24 cd06533 Glyco_transf_WecG_TagA 32.3 54 0.0012 26.6 3.3 32 68-101 47-78 (171)
25 KOG3239 Density-regulated prot 31.9 34 0.00073 29.5 2.0 36 69-104 11-55 (193)
26 PF13684 Dak1_2: Dihydroxyacet 31.4 66 0.0014 29.0 4.0 33 66-99 265-297 (313)
27 PRK10739 putative antibiotic t 29.9 31 0.00067 29.3 1.5 44 101-144 29-72 (197)
28 TIGR00427 membrane protein, Ma 29.6 55 0.0012 27.7 3.0 61 101-168 32-93 (201)
29 cd03715 RT_ZFREV_like RT_ZFREV 29.5 70 0.0015 26.2 3.6 17 173-189 152-169 (210)
30 COG1232 HemY Protoporphyrinoge 29.5 80 0.0017 30.2 4.3 44 77-120 397-440 (444)
31 smart00758 PA14 domain in bact 28.6 40 0.00086 25.4 1.8 19 170-188 64-82 (136)
32 PF01914 MarC: MarC family int 28.6 33 0.00071 29.0 1.5 44 101-144 29-72 (203)
33 PF09779 Ima1_N: Ima1 N-termin 28.5 29 0.00063 27.5 1.0 20 77-96 104-123 (131)
34 TIGR00696 wecB_tagA_cpsF bacte 28.4 58 0.0013 27.0 2.9 32 68-101 49-80 (177)
35 PLN02304 probable pectinestera 27.4 69 0.0015 30.2 3.5 37 51-91 60-96 (379)
36 COG5007 Predicted transcriptio 26.8 18 0.00039 27.2 -0.4 59 82-154 3-63 (80)
37 cd02966 TlpA_like_family TlpA- 26.8 84 0.0018 21.3 3.1 41 66-106 21-63 (116)
38 PF04457 DUF504: Protein of un 26.7 43 0.00093 22.9 1.5 12 177-188 44-56 (56)
39 COG2215 ABC-type uncharacteriz 26.2 1.1E+02 0.0024 28.2 4.4 19 6-24 139-157 (303)
40 PF08495 FIST: FIST N domain; 25.9 1E+02 0.0022 24.4 3.7 35 66-102 2-36 (198)
41 cd02973 TRX_GRX_like Thioredox 25.3 2E+02 0.0043 18.7 4.8 33 67-99 2-34 (67)
42 PF12046 DUF3529: Protein of u 24.8 2.3E+02 0.0051 24.0 5.9 88 65-153 29-133 (173)
43 PF08821 CGGC: CGGC domain; I 24.7 86 0.0019 24.2 3.0 51 67-117 40-95 (107)
44 PF13464 DUF4115: Domain of un 24.0 61 0.0013 22.8 2.0 15 171-185 45-59 (77)
45 PF03226 Yippee-Mis18: Yippee 23.7 40 0.00086 24.7 1.0 27 66-93 53-85 (96)
46 COG2126 RPL37A Ribosomal prote 23.5 36 0.00078 24.4 0.6 14 67-80 28-41 (61)
47 PF06183 DinI: DinI-like famil 23.4 79 0.0017 22.4 2.4 16 83-98 11-26 (65)
48 KOG2480 3-hydroxy-3-methylglut 22.7 1.2E+02 0.0026 30.3 4.1 41 63-103 349-398 (602)
49 PRK05096 guanosine 5'-monophos 22.4 82 0.0018 29.4 2.9 35 73-107 129-163 (346)
50 cd03714 RT_DIRS1 RT_DIRS1: Rev 22.1 2E+02 0.0044 21.2 4.6 15 175-189 62-76 (119)
51 PRK11111 hypothetical protein; 21.9 92 0.002 26.7 3.0 43 102-144 36-78 (214)
52 COG1779 C4-type Zn-finger prot 21.9 54 0.0012 28.5 1.5 19 63-81 35-54 (201)
53 smart00776 NPCBM This novel pu 21.7 76 0.0016 25.5 2.3 17 172-188 83-99 (145)
54 COG2095 MarC Multiple antibiot 21.7 89 0.0019 26.8 2.8 63 101-170 32-95 (203)
55 PF08544 GHMP_kinases_C: GHMP 21.5 1.5E+02 0.0033 20.1 3.5 31 61-95 55-85 (85)
56 cd02985 TRX_CDSP32 TRX family, 21.0 1.7E+02 0.0036 21.2 3.8 78 65-142 15-93 (103)
57 PRK06287 cobalt transport prot 21.0 1E+02 0.0022 23.8 2.8 28 1-28 2-29 (107)
58 COG3809 Uncharacterized protei 20.9 72 0.0016 24.2 1.8 28 66-95 17-48 (88)
59 PF07535 zf-DBF: DBF zinc fing 20.9 49 0.0011 22.5 0.9 19 71-91 6-24 (49)
60 TIGR03730 tungstate_WtpA tungs 20.7 1.6E+02 0.0034 26.0 4.3 33 67-101 2-34 (273)
61 cd06881 PX_SNX15_like The phos 20.7 48 0.001 25.4 0.9 32 80-112 45-76 (117)
62 cd03412 CbiK_N Anaerobic cobal 20.6 94 0.002 24.1 2.5 23 79-101 16-38 (127)
63 cd03011 TlpA_like_ScsD_MtbDsbE 20.6 2.1E+02 0.0046 20.6 4.4 50 65-114 21-70 (123)
64 smart00586 ZnF_DBF Zinc finger 20.5 52 0.0011 22.4 1.0 19 71-91 6-24 (49)
No 1
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=100.00 E-value=4.4e-70 Score=460.47 Aligned_cols=188 Identities=40% Similarity=0.710 Sum_probs=166.5
Q ss_pred CcchhHHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCc---cccccCCCceEEEEeccCc
Q 029622 1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIP-SENLTPDFPSQK---IVGGIGYGSTVNINFCASC 76 (190)
Q Consensus 1 ~~~~~~~l~g~~~~~~~~d~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~G~tV~i~YC~SC 76 (190)
|||+|++++|||+|++|||+|++|+|+.+.-.+|.++|..+..-| .-+++.+++.|| ..++++.|+|++|+||.||
T Consensus 1 M~r~~~iiiGl~~f~~~~Dvf~~~tp~e~s~e~h~~~~~~~~~~p~~~~e~~~~~g~ke~gv~~~~~~~ptl~i~fCvSC 80 (226)
T KOG3286|consen 1 MSRFGLIIIGLPFFLSCSDVFRLFTPPEHSDENHQSPKDDFEAEPDEIDETSFAQGQKESGVGKHIKYGPTLEINFCVSC 80 (226)
T ss_pred CCccceeeehhHHHHHHHHHHHccCCCcccccccCCCCccccccccccchhcccCcccccCcccccccCCcEEEEEEEec
Confidence 999999999999999999999999943332111111111111112 556889999998 3346678999999999999
Q ss_pred CcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhhhhhhhcCchhHH
Q 029622 77 SYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSI 156 (190)
Q Consensus 77 GY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w~~~~~~NK~~~~ 156 (190)
|||++|+|++++++++||+++|+|+||+|++||++|||+++++|+++|++|+.|++||+++|+++|+||+|.++||+++|
T Consensus 81 gYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~~P~iwqh~~aNkf~sc 160 (226)
T KOG3286|consen 81 GYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLGYPSIWQHAQANKFYSC 160 (226)
T ss_pred CcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCCCcHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccEEEEECCeEeeec
Q 029622 157 ASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDL 188 (190)
Q Consensus 157 ~~~fflgN~ie~~L~sTGAFEIylNd~lV~S~ 188 (190)
||+||+||++|++|+|||||||+|||++||||
T Consensus 161 m~vf~lGN~les~L~StGAFEI~lndepVwSK 192 (226)
T KOG3286|consen 161 MMVFFLGNMLESQLISTGAFEITLNDEPVWSK 192 (226)
T ss_pred HHHHHHHHHHHHHhhccCcEEEEECCEeeeeh
Confidence 99999999999999999999999999999998
No 2
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=99.70 E-value=2.3e-17 Score=118.95 Aligned_cols=35 Identities=37% Similarity=0.777 Sum_probs=33.7
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCC--eEEec
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPG--IDVVL 100 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~--i~V~G 100 (190)
|+|+|+||.+|+|++.|.++++.|+++||+ .+|++
T Consensus 1 p~V~IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~ 37 (76)
T PF10262_consen 1 PKVTIEYCTSCGYRPRALELAQELLQTFPDRIAEVEL 37 (76)
T ss_dssp EEEEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcceEEEE
Confidence 589999999999999999999999999999 88988
No 3
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=99.65 E-value=2.2e-16 Score=113.39 Aligned_cols=38 Identities=37% Similarity=0.786 Sum_probs=36.2
Q ss_pred EEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCC
Q 029622 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105 (190)
Q Consensus 68 V~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpP 105 (190)
|+|+||.+|||+..|.++++.|+++||+.+++++++||
T Consensus 1 V~IeyC~~C~y~~Ra~~l~q~L~~~Fp~~~v~~~~~~~ 38 (72)
T TIGR02174 1 VEIEYCGSCGYKPRAAWLKQELLEEFPDLEIEGENTPP 38 (72)
T ss_pred CEEEECCCCCChHHHHHHHHHHHHHCCCCeeEEeeecC
Confidence 68999999999999999999999999999999999876
No 4
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=88.99 E-value=0.31 Score=37.33 Aligned_cols=16 Identities=31% Similarity=0.710 Sum_probs=14.3
Q ss_pred cccEEEEECCeEeeec
Q 029622 173 SGAFEVYCNDDLVSDL 188 (190)
Q Consensus 173 TGAFEIylNd~lV~S~ 188 (190)
-|-|||++||++||..
T Consensus 47 GG~FeI~~dg~~iWeR 62 (99)
T COG3526 47 GGVFEITCDGVLIWER 62 (99)
T ss_pred CceEEEEECCEEEEEe
Confidence 5789999999999974
No 5
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=65.82 E-value=6.4 Score=27.68 Aligned_cols=17 Identities=18% Similarity=-0.103 Sum_probs=13.6
Q ss_pred ccccEEEEECCeEeeec
Q 029622 172 SSGAFEVYCNDDLVSDL 188 (190)
Q Consensus 172 sTGAFEIylNd~lV~S~ 188 (190)
|..--+|++||++||=.
T Consensus 12 S~~~i~V~Y~G~pV~Ie 28 (58)
T TIGR02861 12 SPEMINVTYKGVPVYIE 28 (58)
T ss_pred CccceEEEECCEEEEEE
Confidence 44449999999999954
No 6
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=64.68 E-value=61 Score=27.31 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=28.2
Q ss_pred EEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 68 V~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
|.+.+|+.|.|=+.++..-+.+.++| +++|.+-+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeC
Confidence 66788889999999988877888888 5776665544
No 7
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=59.93 E-value=7.4 Score=29.97 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=19.8
Q ss_pred eccCcC----cchhHHHHHHHHHhhCCCeE
Q 029622 72 FCASCS----YRGTAITMKRMLETQFPGID 97 (190)
Q Consensus 72 YC~SCG----Y~~~f~e~k~~L~~~yP~i~ 97 (190)
-|.||- -+.+|+=++.+|..|||+..
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~ 37 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQP 37 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCc
Confidence 499994 68899999999999999964
No 8
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=59.47 E-value=9 Score=26.94 Aligned_cols=20 Identities=25% Similarity=0.004 Sum_probs=15.5
Q ss_pred hhccccEEEEECCeEeeecC
Q 029622 170 LQSSGAFEVYCNDDLVSDLS 189 (190)
Q Consensus 170 L~sTGAFEIylNd~lV~S~~ 189 (190)
+-|..-.+|++||++||=.+
T Consensus 10 ~~S~~~i~V~y~G~pV~Ie~ 29 (58)
T PF08141_consen 10 AESPDMIEVTYNGVPVWIEH 29 (58)
T ss_pred HcCCceEEEEECCEEEEEEE
Confidence 44666679999999999543
No 9
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=58.07 E-value=9.6 Score=36.78 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=28.1
Q ss_pred ccCcCcchhHHHHHHHHHhhCCCeEEeccc
Q 029622 73 CASCSYRGTAITMKRMLETQFPGIDVVLAN 102 (190)
Q Consensus 73 C~SCGY~~~f~e~k~~L~~~yP~i~V~G~n 102 (190)
=.|-|+.--+.++-++++++||+++|.|.|
T Consensus 270 DSSqGnS~~qiemik~iK~~yP~l~ViaGN 299 (503)
T KOG2550|consen 270 DSSQGNSIYQLEMIKYIKETYPDLQIIAGN 299 (503)
T ss_pred ecCCCcchhHHHHHHHHHhhCCCceeeccc
Confidence 478899999999999999999999999999
No 10
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.46 E-value=15 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=26.9
Q ss_pred EEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 69 NINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 69 ~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
+|.+..+. ..+-++.++.|+++||+++|.|..=+
T Consensus 50 ~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g 83 (172)
T PF03808_consen 50 RIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHG 83 (172)
T ss_pred eEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 55555554 68888999999999999999996543
No 11
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=52.02 E-value=10 Score=30.36 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=16.9
Q ss_pred EeccCcCcchhHHHHHHHHHhhCCCeEEe
Q 029622 71 NFCASCSYRGTAITMKRMLETQFPGIDVV 99 (190)
Q Consensus 71 ~YC~SCGY~~~f~e~k~~L~~~yP~i~V~ 99 (190)
..|.||+ .+.+|++ ++||+++|.
T Consensus 106 ~pC~SC~--~vi~qF~----~~~pni~~~ 128 (133)
T PF14424_consen 106 PPCESCS--NVIEQFK----KDFPNIKVN 128 (133)
T ss_pred CcChhHH--HHHHHHH----HHCCCcEEE
Confidence 5899994 4666655 489999763
No 12
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=51.57 E-value=13 Score=31.29 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=23.1
Q ss_pred EEEEeccCcCcchhH-------HHHHHHHHhhCCCe
Q 029622 68 VNINFCASCSYRGTA-------ITMKRMLETQFPGI 96 (190)
Q Consensus 68 V~i~YC~SCGY~~~f-------~e~k~~L~~~yP~i 96 (190)
++|.||.-|++-..| +.=+.-|++.+|++
T Consensus 2 ~~V~YCgvCs~P~EyCEf~~~~~kCk~WL~~n~p~l 37 (173)
T TIGR01159 2 LRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDL 37 (173)
T ss_pred ceeEECCCCCCchHHhcCCCCHHHHHHHHHHhChHH
Confidence 589999999865554 56688899999986
No 13
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=48.26 E-value=13 Score=30.67 Aligned_cols=17 Identities=47% Similarity=0.669 Sum_probs=15.4
Q ss_pred ccccEEEEECCeEeeec
Q 029622 172 SSGAFEVYCNDDLVSDL 188 (190)
Q Consensus 172 sTGAFEIylNd~lV~S~ 188 (190)
++|.+||++||++|++.
T Consensus 167 ~~G~~~vw~nG~~v~~~ 183 (224)
T PF14099_consen 167 SDGFLEVWLNGKLVVDY 183 (224)
T ss_dssp CTEEEEEEECCEECCEE
T ss_pred CCEEEEEEECCEEEEEE
Confidence 78999999999999864
No 14
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=47.16 E-value=23 Score=26.22 Aligned_cols=29 Identities=38% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEeccCcCcchhHHHHHHHHHhhCCCeEEe
Q 029622 69 NINFCASCSYRGTAITMKRMLETQFPGIDVV 99 (190)
Q Consensus 69 ~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~ 99 (190)
.|+||.|+-..+.-..+++ |+ ++|+++|.
T Consensus 4 iVefC~~Nl~~g~~~~~~~-Le-~~p~~~Vi 32 (78)
T PF07293_consen 4 IVEFCVSNLASGTDQVYEK-LE-KDPDIDVI 32 (78)
T ss_pred eEEEcccCchhhhHHHHHH-Hh-cCCCccEE
Confidence 6899999977665444433 44 57998763
No 15
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=46.44 E-value=15 Score=30.98 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.9
Q ss_pred EeccCcCcchhHHHHHHHHHhhCCCeE
Q 029622 71 NFCASCSYRGTAITMKRMLETQFPGID 97 (190)
Q Consensus 71 ~YC~SCGY~~~f~e~k~~L~~~yP~i~ 97 (190)
=-+.+|.|.++|.|+++-++.+-|..+
T Consensus 110 C~~e~C~F~GtY~eLrKHar~~HP~~r 136 (162)
T PF07800_consen 110 CSQESCSFSGTYSELRKHARSEHPSAR 136 (162)
T ss_pred CcccccccccCHHHHHHHHHhhCCCCC
Confidence 346789999999999999999999874
No 16
>PRK13669 hypothetical protein; Provisional
Probab=44.20 E-value=23 Score=26.34 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=20.8
Q ss_pred EEEeccCcCcchhHHHHHHHHHhhCCCeEE
Q 029622 69 NINFCASCSYRGTAITMKRMLETQFPGIDV 98 (190)
Q Consensus 69 ~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V 98 (190)
.|+||.|.-..+.-.-++ .| +++|+++|
T Consensus 4 iVEfC~sNl~~G~~~~~~-~L-e~dP~~dV 31 (78)
T PRK13669 4 IVEFCVSNLASGSQAAFE-KL-EKDPNLDV 31 (78)
T ss_pred eeeehhcchhhhHHHHHH-HH-HhCCCceE
Confidence 589999997777755455 34 67999985
No 17
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=43.36 E-value=22 Score=25.13 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=15.6
Q ss_pred hhccccEEEEECCeEeee
Q 029622 170 LQSSGAFEVYCNDDLVSD 187 (190)
Q Consensus 170 L~sTGAFEIylNd~lV~S 187 (190)
+-|..--+|++||++||=
T Consensus 10 ~~Sp~~i~VtY~G~pV~I 27 (59)
T PRK03174 10 AESPDMANVTYNGVPIYI 27 (59)
T ss_pred HcCccceEEEECCEEEEE
Confidence 567888999999999994
No 18
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=42.87 E-value=23 Score=26.97 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=16.0
Q ss_pred CcchhHHHHHHH---HHHHhhhhhh
Q 029622 1 MDRLNILLLGLP---LFLLCSDLLN 22 (190)
Q Consensus 1 ~~~~~~~l~g~~---~~~~~~d~~~ 22 (190)
|+.-.+|||+|. +||+.||+.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 666678888877 3677777764
No 19
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=42.44 E-value=24 Score=25.01 Aligned_cols=18 Identities=28% Similarity=0.098 Sum_probs=15.4
Q ss_pred hhccccEEEEECCeEeee
Q 029622 170 LQSSGAFEVYCNDDLVSD 187 (190)
Q Consensus 170 L~sTGAFEIylNd~lV~S 187 (190)
+-|..--+|++||++||=
T Consensus 10 ~~S~~~i~V~Y~G~pV~I 27 (59)
T PRK01625 10 LSSSSRIDVTYEGVPVWI 27 (59)
T ss_pred HcCCcceEEEECCEEEEE
Confidence 457788899999999994
No 20
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=38.59 E-value=29 Score=26.70 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=21.5
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhC
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQF 93 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~y 93 (190)
-+.+.|.||+-|..-=..-=+++.|-+.|
T Consensus 5 ~p~i~I~YCtQCnWlLRa~WmaQElL~TF 33 (99)
T COG3526 5 KPRIEITYCTQCNWLLRAAWMAQELLSTF 33 (99)
T ss_pred CceEEEEEechhhHHHHHHHHHHHHHHHH
Confidence 36799999999986655556666666665
No 21
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=35.46 E-value=95 Score=22.93 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=29.1
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCC
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpP 105 (190)
-.+|.+.+-..|++=+.+++.-+-+..++++++++-.+||.
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p~ 46 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFPI 46 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCCc
Confidence 35788888788887666655444455678999888878864
No 22
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.14 E-value=25 Score=27.55 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.0
Q ss_pred eccCcC----cchhHHHHHHHHHhhCCCe
Q 029622 72 FCASCS----YRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 72 YC~SCG----Y~~~f~e~k~~L~~~yP~i 96 (190)
-|.||- -|.+++=++.+|+.|||+.
T Consensus 15 iCASCV~aPtsKdt~eWLeaalkRKyp~~ 43 (106)
T COG4837 15 ICASCVNAPTSKDTYEWLEAALKRKYPNQ 43 (106)
T ss_pred hhHHhcCCCcchhHHHHHHHHHhccCCCC
Confidence 599994 6788999999999999996
No 23
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=33.78 E-value=50 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHhhCCCeE---EecccCCC
Q 029622 79 RGTAITMKRMLETQFPGID---VVLANYPP 105 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP~i~---V~G~nYpP 105 (190)
+..|++.+.-++++||++. ..|..||.
T Consensus 2 ~~t~~~~~~r~~e~Fp~~slvef~g~~~Pv 31 (60)
T PF05265_consen 2 AMTFESAASRFEEKFPHYSLVEFSGVATPV 31 (60)
T ss_pred ceeHHHHHHHHHHHCCCceEEEEeCCCCce
Confidence 4578999999999999964 56766664
No 24
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=32.34 E-value=54 Score=26.57 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=24.8
Q ss_pred EEEEeccCcCcchhHHHHHHHHHhhCCCeEEecc
Q 029622 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLA 101 (190)
Q Consensus 68 V~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~ 101 (190)
.+|.+..+- ..+-++.++.|+++||+++|.|.
T Consensus 47 ~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~ 78 (171)
T cd06533 47 LRVFLLGAK--PEVLEKAAERLRARYPGLKIVGY 78 (171)
T ss_pred CeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEe
Confidence 355555443 77778888899999999999994
No 25
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=31.86 E-value=34 Score=29.45 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=27.1
Q ss_pred EEEeccCcCcchhHHHH-------HHHHHhhCCCe--EEecccCC
Q 029622 69 NINFCASCSYRGTAITM-------KRMLETQFPGI--DVVLANYP 104 (190)
Q Consensus 69 ~i~YC~SCGY~~~f~e~-------k~~L~~~yP~i--~V~G~nYp 104 (190)
.+.||.-|+|-..|=|+ +.-|++..||+ ...|++=+
T Consensus 11 ~vlYCGvCSlP~EYCEf~~~~~kCk~WL~~n~pdly~kL~~e~~~ 55 (193)
T KOG3239|consen 11 SVLYCGVCSLPPEYCEFSGDLKKCKEWLEENHPDLYAKLYGEDDP 55 (193)
T ss_pred ceEEeeccCCCHHHHHccccHHHHHHHHHhcChhHHHhhhcccCh
Confidence 79999999977666554 78899999986 45555543
No 26
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=31.44 E-value=66 Score=28.97 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.5
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEe
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVV 99 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~ 99 (190)
--|++.|....+=. ..+.+++.|+++||+++|+
T Consensus 265 elvTi~~G~~~~~~-~a~~l~~~l~~~~p~~eve 297 (313)
T PF13684_consen 265 ELVTIYYGEDVSEE-EAEALAEFLEEKYPDVEVE 297 (313)
T ss_pred eEEEEEecCCCCHH-HHHHHHHHHHHHhCCeEEE
Confidence 46888888777644 8899999999999999875
No 27
>PRK10739 putative antibiotic transporter; Provisional
Probab=29.86 E-value=31 Score=29.27 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=37.0
Q ss_pred ccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhh
Q 029622 101 ANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPW 144 (190)
Q Consensus 101 ~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w 144 (190)
+++++..-|+..-|..-++-..++...++|+.++..+|...|+.
T Consensus 29 ~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~af 72 (197)
T PRK10739 29 KHLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETV 72 (197)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 45677777788888888888888889999999999999988775
No 28
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=29.57 E-value=55 Score=27.68 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=44.3
Q ss_pred ccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhhhhhhhcCchhHHHHHHHH-HHHHHH
Q 029622 101 ANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLI-GNFLQS 168 (190)
Q Consensus 101 ~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w~~~~~~NK~~~~~~~ffl-gN~ie~ 168 (190)
+++++..-++..-|..-++-..++...+.|+.++..+|..-++. |+.--+..+++ -+|+.+
T Consensus 32 ~~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~af-------rIaGGiiL~~ia~~ml~~ 93 (201)
T TIGR00427 32 EYYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAF-------RIAGGILLFTIAMDMLSG 93 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-------HHHHHHHHHHHHHHHhCC
Confidence 35667777788888888888888889999999999999987775 44333344443 466644
No 29
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=29.54 E-value=70 Score=26.23 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=13.9
Q ss_pred ccc-EEEEECCeEeeecC
Q 029622 173 SGA-FEVYCNDDLVSDLS 189 (190)
Q Consensus 173 TGA-FEIylNd~lV~S~~ 189 (190)
.|. -++|+||.+|||++
T Consensus 152 ~~~~~~~Y~DDili~s~~ 169 (210)
T cd03715 152 EGTILLQYVDDLLLAADS 169 (210)
T ss_pred CCeEEEEECCcEEEecCC
Confidence 344 48999999999976
No 30
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=29.51 E-value=80 Score=30.18 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=33.7
Q ss_pred CcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHhhHHH
Q 029622 77 SYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120 (190)
Q Consensus 77 GY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l~~~q 120 (190)
||...-++++..|++.||++.+.|.+|.=...+..+++.-.+++
T Consensus 397 G~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~ 440 (444)
T COG1232 397 GHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAE 440 (444)
T ss_pred hHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHH
Confidence 45555567777788889999999999998788887776665443
No 31
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=28.61 E-value=40 Score=25.41 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.1
Q ss_pred hhccccEEEEECCeEeeec
Q 029622 170 LQSSGAFEVYCNDDLVSDL 188 (190)
Q Consensus 170 L~sTGAFEIylNd~lV~S~ 188 (190)
+.++|.+++++||++|.+.
T Consensus 64 ~~~~~~~~l~Idg~~vid~ 82 (136)
T smart00758 64 ITSDDGARLWIDGKLVIDN 82 (136)
T ss_pred EEcCCcEEEEECCcEEEcC
Confidence 4578999999999999863
No 32
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=28.57 E-value=33 Score=28.99 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=38.6
Q ss_pred ccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhh
Q 029622 101 ANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPW 144 (190)
Q Consensus 101 ~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w 144 (190)
+++++...|+..-|..-++-..+++..++|+.++..+|...+..
T Consensus 29 ~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af 72 (203)
T PF01914_consen 29 KGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAF 72 (203)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 46788888889989988888899999999999999999987775
No 33
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=28.45 E-value=29 Score=27.49 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=16.6
Q ss_pred CcchhHHHHHHHHHhhCCCe
Q 029622 77 SYRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 77 GY~~~f~e~k~~L~~~yP~i 96 (190)
-|...+++||+.|+++||-+
T Consensus 104 ~~~~e~~~Yr~~LE~rYP~l 123 (131)
T PF09779_consen 104 NYEEELPEYRRSLEQRYPQL 123 (131)
T ss_pred HHHHHHHHHHHHHHHHhhHh
Confidence 46778899999999999853
No 34
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=28.42 E-value=58 Score=27.00 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=26.2
Q ss_pred EEEEeccCcCcchhHHHHHHHHHhhCCCeEEecc
Q 029622 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLA 101 (190)
Q Consensus 68 V~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~ 101 (190)
.++.++.+- ..+-++.++.|+++||+++|.|.
T Consensus 49 ~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~ 80 (177)
T TIGR00696 49 LPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA 80 (177)
T ss_pred CeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE
Confidence 466666554 77889999999999999999985
No 35
>PLN02304 probable pectinesterase
Probab=27.43 E-value=69 Score=30.18 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=17.2
Q ss_pred CCCCCCccccccCCCceEEEEeccCcCcchhHHHHHHHHHh
Q 029622 51 PDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLET 91 (190)
Q Consensus 51 ~~~~~~~~~~~~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~ 91 (190)
-|||..-+...+++-.++.|- ..=.+.|..++.+|..
T Consensus 60 ~~~~~~~~~~~~~~~~~i~Va----~dGsGdf~TIQ~AIda 96 (379)
T PLN02304 60 DDFPPDFPPPDTNTTSILCVD----PNGCCNFTTVQSAVDA 96 (379)
T ss_pred ccCCCCCCchhhccceEEEEC----CCCCCCccCHHHHHhh
Confidence 356644333333333444443 2223456677777743
No 36
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=26.85 E-value=18 Score=27.18 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCC--eEEecccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhhhhhhhcCchh
Q 029622 82 AITMKRMLETQFPG--IDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFG 154 (190)
Q Consensus 82 f~e~k~~L~~~yP~--i~V~G~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w~~~~~~NK~~ 154 (190)
-+|+|++|++..|- ++|+|++ +=++..++.-.+.|.....+=-+.+-+.-.++.+|.+.
T Consensus 3 ~e~Ik~ll~~~L~~e~v~V~Gdg--------------~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IH 63 (80)
T COG5007 3 NEEIKSLLENALPLEEVEVEGDG--------------SHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIH 63 (80)
T ss_pred HHHHHHHHHhcCCccEEEEecCC--------------ceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceE
Confidence 37899999999987 5688876 12244445555555554333223233333344444443
No 37
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=26.78 E-value=84 Score=21.32 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=28.6
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhC--CCeEEecccCCCC
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQF--PGIDVVLANYPPP 106 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~y--P~i~V~G~nYpPp 106 (190)
+++...+...|++-+.+...-+.+++++ +++.+..-+..+.
T Consensus 21 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 21 VVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 4666666667776566655555577778 8898888887764
No 38
>PF04457 DUF504: Protein of unknown function (DUF504); InterPro: IPR007547 This is a family of uncharacterised proteins.
Probab=26.68 E-value=43 Score=22.94 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=9.8
Q ss_pred EE-EECCeEeeec
Q 029622 177 EV-YCNDDLVSDL 188 (190)
Q Consensus 177 EI-ylNd~lV~S~ 188 (190)
|| +-||+.||++
T Consensus 44 ~ir~~~g~vvw~R 56 (56)
T PF04457_consen 44 EIRKYDGEVVWDR 56 (56)
T ss_pred EEEecCCcEEEcC
Confidence 66 8899999975
No 39
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=26.24 E-value=1.1e+02 Score=28.19 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhhhhcc
Q 029622 6 ILLLGLPLFLLCSDLLNLF 24 (190)
Q Consensus 6 ~~l~g~~~~~~~~d~~~~f 24 (190)
+|+.++-+.++-+-+..+|
T Consensus 139 ~Ll~~~G~w~~~r~lr~l~ 157 (303)
T COG2215 139 LLLILLGLWLLWRTLRRLR 157 (303)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4666777888888888888
No 40
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=25.93 E-value=1e+02 Score=24.37 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=26.1
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEeccc
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLAN 102 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~n 102 (190)
|++-+.||+.. |...-+ +.+.|++++|+.++.|.-
T Consensus 2 p~lvi~f~s~~-~~~~~~-i~~~l~~~~p~~~iiG~s 36 (198)
T PF08495_consen 2 PDLVILFCSPE-YDEEAK-ILEALRERLPDAPIIGCS 36 (198)
T ss_pred CEEEEEEecch-hhhhHH-HHHHHHHHCCCCcEEEEc
Confidence 45677787766 444444 999999999998887753
No 41
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=25.33 E-value=2e+02 Score=18.67 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=23.2
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhCCCeEEe
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVV 99 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~ 99 (190)
+|++.+=..|+|=+..+++-+.+.+.+|++++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~ 34 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAE 34 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEE
Confidence 466666667777777777777777788887643
No 42
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=24.84 E-value=2.3e+02 Score=24.02 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=54.1
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhC-------CC---eEEecccCCCChHHHHHHhHhhHHHHHHHhHhhc-----
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQF-------PG---IDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVA----- 129 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~y-------P~---i~V~G~nYpPp~~k~~Lak~l~~~q~~lI~liv~----- 129 (190)
..|.++.|..+---.....+++++++++- |+ +..+ .++.|+..-...=.++..+-++.+++++.
T Consensus 29 dRt~~~~~~s~~p~~~~~~~l~~yf~~r~y~v~~~d~~~~~itFe-G~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~ 107 (173)
T PF12046_consen 29 DRTEQVTFESPQPPDEVLEQLKAYFEQRNYRVAEGDAEGEVITFE-GFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPD 107 (173)
T ss_pred ccEEEEEEEcCCCHHHHHHHHHHHHHhcCceecccCccccEEEEE-EEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34667777777667888888999998872 12 2233 46788888777767766666666665553
Q ss_pred -CCccccccCC-CchhhhhhhhcCch
Q 029622 130 -GEQIFPMLGM-TPPPWYYSLRANRF 153 (190)
Q Consensus 130 -G~~iF~~LG~-~~P~w~~~~~~NK~ 153 (190)
|..+|..... +-..||+|-+..|.
T Consensus 108 ~g~~~~~L~lLsPlAG~~Yw~kA~R~ 133 (173)
T PF12046_consen 108 LGWWPLLLVLLSPLAGIFYWQKAGRP 133 (173)
T ss_pred cccHHHHHHHHhhhhhhhhhhcCCCc
Confidence 2222222122 34667777766653
No 43
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=24.67 E-value=86 Score=24.21 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=26.9
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhCCCeE-----EecccCCCChHHHHHHhHhh
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQFPGID-----VVLANYPPPLPKRLLAKVVP 117 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~-----V~G~nYpPp~~k~~Lak~l~ 117 (190)
-|-|..|..|.=++.-...+++++....-+. ..+..+++=|....+.+.+.
T Consensus 40 lvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~ 95 (107)
T PF08821_consen 40 LVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIE 95 (107)
T ss_pred EEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHH
Confidence 3456677777755555555555544444333 23333335555555555553
No 44
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=23.98 E-value=61 Score=22.76 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=12.6
Q ss_pred hccccEEEEECCeEe
Q 029622 171 QSSGAFEVYCNDDLV 185 (190)
Q Consensus 171 ~sTGAFEIylNd~lV 185 (190)
=..+|.||++||+.+
T Consensus 45 Gna~~v~v~~nG~~~ 59 (77)
T PF13464_consen 45 GNAGAVEVTVNGKPV 59 (77)
T ss_pred eCCCcEEEEECCEEC
Confidence 357899999999976
No 45
>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes. The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.
Probab=23.74 E-value=40 Score=24.69 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=22.6
Q ss_pred ceEEEEeccCcC------cchhHHHHHHHHHhhC
Q 029622 66 STVNINFCASCS------YRGTAITMKRMLETQF 93 (190)
Q Consensus 66 ~tV~i~YC~SCG------Y~~~f~e~k~~L~~~y 93 (190)
-++.-.+|.+|+ |..++++ .+..+.+|
T Consensus 53 ~~~~~l~C~~C~~~lGwkY~~a~~~-~~~k~g~f 85 (96)
T PF03226_consen 53 HTVRDLFCSGCNTILGWKYESAPEE-QKYKEGKF 85 (96)
T ss_pred EEEEEeEcccCChhHCcEEEEcCHh-HhhhCCEE
Confidence 789999999997 8888888 77777665
No 46
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=23.46 E-value=36 Score=24.36 Aligned_cols=14 Identities=29% Similarity=0.885 Sum_probs=11.2
Q ss_pred eEEEEeccCcCcch
Q 029622 67 TVNINFCASCSYRG 80 (190)
Q Consensus 67 tV~i~YC~SCGY~~ 80 (190)
.|+=.||.+|||-.
T Consensus 28 hv~k~~CaaCGfgr 41 (61)
T COG2126 28 HVRKKYCAACGFGR 41 (61)
T ss_pred eeccceecccCCCC
Confidence 46668999999973
No 47
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=23.40 E-value=79 Score=22.43 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=11.6
Q ss_pred HHHHHHHHhhCCCeEE
Q 029622 83 ITMKRMLETQFPGIDV 98 (190)
Q Consensus 83 ~e~k~~L~~~yP~i~V 98 (190)
.|+.+-|...||+..|
T Consensus 11 ~EL~kRl~~~yPd~~v 26 (65)
T PF06183_consen 11 SELTKRLHRQYPDAEV 26 (65)
T ss_dssp HHHHHHHHHH-SS-EE
T ss_pred HHHHHHHHHHCCCceE
Confidence 5788889999999764
No 48
>KOG2480 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase [Lipid transport and metabolism]
Probab=22.74 E-value=1.2e+02 Score=30.29 Aligned_cols=41 Identities=29% Similarity=0.528 Sum_probs=33.3
Q ss_pred CCCceEEEEeccCcC-------cchhHHHHHHHHHhhCCCeEEec--ccC
Q 029622 63 GYGSTVNINFCASCS-------YRGTAITMKRMLETQFPGIDVVL--ANY 103 (190)
Q Consensus 63 ~~G~tV~i~YC~SCG-------Y~~~f~e~k~~L~~~yP~i~V~G--~nY 103 (190)
=.|..+-+.||++-| ..|.-|..-+.+.++|||++|.+ .||
T Consensus 349 iaG~~lyiRF~~~TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iSGNy 398 (602)
T KOG2480|consen 349 IAGRNLYIRFCTSTGDAMGMNMISKGVENALRFLSEEFPDMQVISISGNY 398 (602)
T ss_pred eecceeEEEEEeccccchhhhhHHHHHHHHHHHHHHhCCCceEEEeccCc
Confidence 357888999999887 45667888899999999999755 777
No 49
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=22.37 E-value=82 Score=29.45 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=29.7
Q ss_pred ccCcCcchhHHHHHHHHHhhCCCeEEecccCCCCh
Q 029622 73 CASCSYRGTAITMKRMLETQFPGIDVVLANYPPPL 107 (190)
Q Consensus 73 C~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~ 107 (190)
=.+.|+.....++-+.|+++||++.|.+.|=--+.
T Consensus 129 D~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e 163 (346)
T PRK05096 129 DVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGE 163 (346)
T ss_pred ECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHH
Confidence 36789999999999999999999999999944443
No 50
>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase.
Probab=22.13 E-value=2e+02 Score=21.23 Aligned_cols=15 Identities=27% Similarity=0.219 Sum_probs=13.3
Q ss_pred cEEEEECCeEeeecC
Q 029622 175 AFEVYCNDDLVSDLS 189 (190)
Q Consensus 175 AFEIylNd~lV~S~~ 189 (190)
-.++|+||.+|+|++
T Consensus 62 ~v~~Y~DDili~~~~ 76 (119)
T cd03714 62 RIFSYLDDLLIIASS 76 (119)
T ss_pred EEEEEecCeEEEeCc
Confidence 479999999999984
No 51
>PRK11111 hypothetical protein; Provisional
Probab=21.88 E-value=92 Score=26.71 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=34.9
Q ss_pred cCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhh
Q 029622 102 NYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPW 144 (190)
Q Consensus 102 nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w 144 (190)
.+++..-++..-|..-++-..++...++|+.++..+|..-|+.
T Consensus 36 ~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~af 78 (214)
T PRK11111 36 HQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSF 78 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4566666777777777778888888999999999999987775
No 52
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=21.87 E-value=54 Score=28.51 Aligned_cols=19 Identities=32% Similarity=0.861 Sum_probs=14.5
Q ss_pred CCCc-eEEEEeccCcCcchh
Q 029622 63 GYGS-TVNINFCASCSYRGT 81 (190)
Q Consensus 63 ~~G~-tV~i~YC~SCGY~~~ 81 (190)
..|. -+..-+|..||||.+
T Consensus 35 yFG~V~i~t~~C~~CgYR~~ 54 (201)
T COG1779 35 YFGEVLISTGVCERCGYRST 54 (201)
T ss_pred ccceEEEEEEEccccCCccc
Confidence 4554 566789999999975
No 53
>smart00776 NPCBM This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins.
Probab=21.75 E-value=76 Score=25.50 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=15.3
Q ss_pred ccccEEEEECCeEeeec
Q 029622 172 SSGAFEVYCNDDLVSDL 188 (190)
Q Consensus 172 sTGAFEIylNd~lV~S~ 188 (190)
.+-.|+||.||+.+|..
T Consensus 83 gsV~F~V~~Dg~~l~~s 99 (145)
T smart00776 83 GSVVFEVYADGTKLYNS 99 (145)
T ss_pred ccEEEEEEeCCEeEEEc
Confidence 57789999999999986
No 54
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=21.72 E-value=89 Score=26.77 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=47.2
Q ss_pred ccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhhhhhhhcCchh-HHHHHHHHHHHHHHhh
Q 029622 101 ANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFG-SIASTWLIGNFLQSFL 170 (190)
Q Consensus 101 ~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w~~~~~~NK~~-~~~~~fflgN~ie~~L 170 (190)
+||++..-++.+-+..-++-..+++..++|+.++..+|..-++. |+. -++..+.--+|+...-
T Consensus 32 ~~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~-------rIAGGilLf~ia~~ml~~~~ 95 (203)
T COG2095 32 KGLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAF-------RIAGGILLFLIALRMLFGPT 95 (203)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-------HHhhhHHHHHHHHHHhcCCc
Confidence 68888889999999988888888999999999999999976664 332 3333333456665543
No 55
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=21.46 E-value=1.5e+02 Score=20.13 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=22.6
Q ss_pred ccCCCceEEEEeccCcCcchhHHHHHHHHHhhCCC
Q 029622 61 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPG 95 (190)
Q Consensus 61 ~~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~ 95 (190)
|.|-|++|-..+ --+..-+++++.++++||+
T Consensus 55 GsG~G~~v~~l~----~~~~~~~~v~~~l~~~~~~ 85 (85)
T PF08544_consen 55 GSGGGPTVFALC----KDEDDAERVAEALREHYKN 85 (85)
T ss_dssp TTSSSSEEEEEE----SSHHHHHHHHHHHHHHTH-
T ss_pred CCCCCCeEEEEE----CCHHHHHHHHHHHHHhCCC
Confidence 335599986664 4477888899999998874
No 56
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=21.03 E-value=1.7e+02 Score=21.20 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=36.9
Q ss_pred CceEEEEeccC-cCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCch
Q 029622 65 GSTVNINFCAS-CSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142 (190)
Q Consensus 65 G~tV~i~YC~S-CGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P 142 (190)
|..+.+.|+.+ |+-=+.....-+.+.++|+++.+..-|-.-..-.+-+++-..+-.+=.+.+.--|+.+....|..+.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~ 93 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEGIGPD 93 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCCCHH
Confidence 55667777644 6654544444444566778876544443333222233333333222222223345555555565443
No 57
>PRK06287 cobalt transport protein CbiN; Validated
Probab=21.02 E-value=1e+02 Score=23.83 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.6
Q ss_pred CcchhHHHHHHHHHHHhhhhhhccCCCC
Q 029622 1 MDRLNILLLGLPLFLLCSDLLNLFTPPP 28 (190)
Q Consensus 1 ~~~~~~~l~g~~~~~~~~d~~~~f~~~~ 28 (190)
|++.++++.|+.+.+..+=++++|..+-
T Consensus 2 ~~~~~~~~~~~~~all~a~~~s~~AS~~ 29 (107)
T PRK06287 2 MDNKKFLIAGLIVALLIAILAPFLASGD 29 (107)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhhcCC
Confidence 6777999999999999999999999543
No 58
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.94 E-value=72 Score=24.25 Aligned_cols=28 Identities=32% Similarity=0.831 Sum_probs=20.5
Q ss_pred ceEEEEeccCcCcchhH---HHHHHHHHhh-CCC
Q 029622 66 STVNINFCASCSYRGTA---ITMKRMLETQ-FPG 95 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f---~e~k~~L~~~-yP~ 95 (190)
..|+|.||-.| +++. -|+.++|+.+ ||.
T Consensus 17 s~vEiD~CPrC--rGVWLDrGELdKli~r~r~pq 48 (88)
T COG3809 17 SGVEIDYCPRC--RGVWLDRGELDKLIERSRYPQ 48 (88)
T ss_pred cCceeeeCCcc--ccEeecchhHHHHHHHhcCCC
Confidence 35799999999 5554 4677777766 765
No 59
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=20.94 E-value=49 Score=22.45 Aligned_cols=19 Identities=16% Similarity=0.597 Sum_probs=15.1
Q ss_pred EeccCcCcchhHHHHHHHHHh
Q 029622 71 NFCASCSYRGTAITMKRMLET 91 (190)
Q Consensus 71 ~YC~SCGY~~~f~e~k~~L~~ 91 (190)
-||.-| +-.|+++..-|++
T Consensus 6 GYCE~C--~~ky~~l~~Hi~s 24 (49)
T PF07535_consen 6 GYCENC--RVKYDDLEEHIQS 24 (49)
T ss_pred ccCccc--cchhhhHHHHhCC
Confidence 399999 7788888887754
No 60
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=20.73 E-value=1.6e+02 Score=26.04 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=25.8
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecc
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLA 101 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~ 101 (190)
+++|..+. +++..++|+.+..++++|+++|+..
T Consensus 2 ~L~V~aAa--sL~~~~~ei~~~Fe~~~~gvkv~~~ 34 (273)
T TIGR03730 2 KLKIFHAG--SLSVPFEEMEKEFEAKHPNVDVQRE 34 (273)
T ss_pred eEEEEEcc--CcHHHHHHHHHHHHhhCCCceEEEE
Confidence 45555555 5699999999999999999987643
No 61
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=20.68 E-value=48 Score=25.43 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhhCCCeEEecccCCCChHHHHH
Q 029622 80 GTAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112 (190)
Q Consensus 80 ~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~L 112 (190)
+.|+.+.+.|++.||++. .+..+||-|-|+++
T Consensus 45 sdF~~L~~~L~~~~~~~~-~~~~~P~lP~K~~~ 76 (117)
T cd06881 45 SDFKKLHRELSRLHKQLY-LSGSFPPFPKGKYF 76 (117)
T ss_pred HHHHHHHHHHHHHhhhcc-ccCcCCCCCCCccc
Confidence 567888889999999975 34456888877653
No 62
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.59 E-value=94 Score=24.08 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHhhCCCeEEecc
Q 029622 79 RGTAITMKRMLETQFPGIDVVLA 101 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP~i~V~G~ 101 (190)
++.|+.+.+.++++||+..|.-+
T Consensus 16 ~~~~~~i~~~l~~~~p~~~V~~a 38 (127)
T cd03412 16 EKTIDAIEDKVRAAFPDYEVRWA 38 (127)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEE
Confidence 56899999999999999887654
No 63
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=20.58 E-value=2.1e+02 Score=20.58 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=30.9
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHh
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAK 114 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak 114 (190)
.+++...|+..|++-......-+.+.+++.-+.|......+..++..+.+
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 70 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQK 70 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHH
Confidence 46788888888998777755555556666555555443334455554444
No 64
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=20.50 E-value=52 Score=22.41 Aligned_cols=19 Identities=21% Similarity=0.572 Sum_probs=14.9
Q ss_pred EeccCcCcchhHHHHHHHHHh
Q 029622 71 NFCASCSYRGTAITMKRMLET 91 (190)
Q Consensus 71 ~YC~SCGY~~~f~e~k~~L~~ 91 (190)
-||.-| +-.|+.+..-|.+
T Consensus 6 GYCE~C--r~kfd~l~~Hi~s 24 (49)
T smart00586 6 GYCENC--REKYDDLETHLLS 24 (49)
T ss_pred cccccH--hHHHhhHHHHhcc
Confidence 499999 7778888876654
Done!