Query 029622
Match_columns 190
No_of_seqs 121 out of 134
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 02:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npb_A Selenoprotein W; struct 99.7 1.5E-16 5.2E-21 119.8 6.8 39 64-102 1-40 (96)
2 2oka_A Hypothetical protein; P 99.5 8.5E-14 2.9E-18 106.4 7.0 32 65-96 5-36 (104)
3 2p0g_A Selenoprotein W-related 99.4 1.3E-13 4.5E-18 105.5 6.9 32 65-96 3-34 (105)
4 2fa8_A Hypothetical protein AT 99.4 1E-13 3.5E-18 106.0 5.9 32 65-96 7-38 (105)
5 2ljk_A Protein C17ORF37; MIEN1 99.3 5.7E-13 2E-17 103.7 4.8 39 62-100 21-59 (117)
6 2ojl_A Hypothetical protein; B 98.9 2.1E-09 7.3E-14 82.6 5.5 31 65-95 8-38 (108)
7 3dex_A SAV_2001; alpha-beta pr 98.9 4E-09 1.4E-13 81.0 6.9 33 64-96 11-43 (107)
8 4gqo_A LMO0859 protein; virule 96.4 0.0045 1.5E-07 52.8 5.9 44 63-106 25-70 (433)
9 3k01_A Acarbose/maltose bindin 95.5 0.028 9.7E-07 47.8 6.8 48 66-116 28-75 (412)
10 2heu_A Sugar ABC transporter, 95.3 0.04 1.4E-06 46.9 6.9 37 66-103 19-55 (401)
11 3quf_A Extracellular solute-bi 94.8 0.041 1.4E-06 46.7 5.6 44 67-115 31-74 (414)
12 2a4h_A Selenoprotein SEP15; re 94.7 0.031 1E-06 43.9 4.3 38 68-107 23-64 (126)
13 2qry_A Thiamine-binding peripl 90.1 0.31 1.1E-05 40.3 4.6 48 63-115 20-70 (330)
14 4g68_A ABC transporter; transp 89.7 0.27 9.2E-06 42.7 4.0 48 65-115 60-110 (456)
15 2c0g_A ERP29 homolog, windbeut 88.4 0.31 1.1E-05 41.0 3.4 39 65-103 33-77 (248)
16 4hw8_A Bacterial extracellular 87.4 0.75 2.6E-05 39.1 5.2 42 66-108 39-81 (420)
17 2vgq_A Maltose-binding peripla 86.9 0.34 1.2E-05 42.7 2.9 39 64-104 18-56 (477)
18 3k6v_A Solute-binding protein 85.6 0.65 2.2E-05 40.9 4.0 33 66-100 43-75 (354)
19 2joi_A Hypothetical protein TA 84.9 0.68 2.3E-05 35.9 3.3 44 60-104 15-58 (118)
20 2v84_A Spermidine/putrescine A 84.5 0.64 2.2E-05 38.6 3.3 35 65-104 24-58 (343)
21 2f9f_A First mannosyl transfer 84.1 3.3 0.00011 31.0 6.9 44 69-113 25-70 (177)
22 1tvm_A PTS system, galactitol- 82.8 4.1 0.00014 29.9 6.8 26 67-92 21-49 (113)
23 3odm_A Pepcase, PEPC, phosphoe 81.2 2.8 9.5E-05 39.9 6.5 82 79-170 42-134 (560)
24 2j23_A Thioredoxin; immune pro 81.0 0.91 3.1E-05 32.1 2.5 39 66-104 35-75 (121)
25 3onm_A Transcriptional regulat 79.5 0.95 3.3E-05 34.6 2.3 39 63-102 24-62 (238)
26 2oe3_A Thioredoxin-3; electron 78.4 0.57 2E-05 33.1 0.7 38 67-104 33-70 (114)
27 3osr_A Maltose-binding peripla 78.0 3.7 0.00013 38.7 6.3 38 64-103 39-76 (653)
28 3gzg_A Molybdate-binding perip 77.5 1.4 4.9E-05 36.2 3.0 34 64-100 21-54 (253)
29 3rlk_A A1 protein; beta-barrel 77.4 1.1 3.8E-05 36.7 2.2 16 35-50 2-17 (192)
30 3kij_A Probable glutathione pe 75.2 7.2 0.00025 29.3 6.2 40 65-104 38-80 (180)
31 2xd3_A MALX, maltose/maltodext 74.7 2 6.9E-05 36.5 3.2 46 67-116 34-79 (416)
32 2yjp_A Putative ABC transporte 73.1 3.1 0.0001 33.4 3.8 27 78-104 77-105 (291)
33 3oo8_A ABC transporter binding 72.9 2.5 8.5E-05 35.6 3.3 41 63-104 25-66 (415)
34 2w7y_A FCSSBP, probable sugar 72.3 2.4 8.2E-05 36.1 3.1 28 79-106 56-83 (430)
35 3uau_A JLPA, surface-exposed l 70.4 3.3 0.00011 36.8 3.6 13 92-104 54-66 (379)
36 2gek_A Phosphatidylinositol ma 69.2 2.7 9.4E-05 34.5 2.7 32 61-92 14-51 (406)
37 1ub1_A MECP2, attachment regio 67.2 11 0.00038 29.5 5.7 40 64-104 54-94 (133)
38 4egs_A Ribose 5-phosphate isom 67.0 5.3 0.00018 31.8 3.9 35 66-100 33-70 (180)
39 3ed3_A Protein disulfide-isome 66.7 4.9 0.00017 33.7 3.8 41 64-104 34-76 (298)
40 1tjn_A Sirohydrochlorin cobalt 66.5 14 0.00047 28.3 6.2 38 78-115 39-79 (156)
41 4g1u_A Hemin transport system 64.7 1.4 4.7E-05 39.3 0.0 7 48-54 15-21 (357)
42 3oti_A CALG3; calicheamicin, T 64.6 3.9 0.00013 34.4 2.8 25 67-92 20-47 (398)
43 2x7m_A Archaemetzincin; metall 63.0 8.2 0.00028 31.5 4.4 34 67-101 22-58 (195)
44 4e3z_A Putative oxidoreductase 62.0 22 0.00075 28.4 6.8 49 65-116 50-99 (272)
45 3osq_A Maltose-binding peripla 61.1 9.3 0.00032 36.0 5.0 38 64-103 39-76 (661)
46 3tla_A MCCF; serine protease, 61.1 9.2 0.00032 33.9 4.7 75 61-137 39-126 (371)
47 2c0d_A Thioredoxin peroxidase 60.2 17 0.00059 29.0 5.8 37 67-106 59-101 (221)
48 3mng_A Peroxiredoxin-5, mitoch 60.2 5.5 0.00019 30.9 2.8 32 67-100 46-83 (173)
49 2gjv_A Putative cytoplasmic pr 59.6 6.3 0.00022 32.3 3.1 30 78-107 27-61 (175)
50 2hdi_B Colicin-IA; outer membr 59.4 1.8 6.1E-05 32.4 -0.2 54 49-102 20-91 (113)
51 3gn3_A Putative protein-disulf 58.7 11 0.00038 29.4 4.3 53 64-116 13-70 (182)
52 3cmi_A Peroxiredoxin HYR1; thi 58.5 13 0.00043 27.5 4.4 36 67-103 35-72 (171)
53 1k7k_A Hypothetical protein YG 58.5 14 0.00047 31.0 5.1 50 69-122 25-83 (221)
54 2eke_C Ubiquitin-like protein 58.3 17 0.0006 26.8 5.1 25 64-88 39-63 (106)
55 2wte_A CSA3; antiviral protein 57.8 10 0.00035 31.5 4.2 68 49-118 13-88 (244)
56 2q58_A Fragment, farnesyl pyro 57.6 12 0.0004 33.0 4.7 20 77-96 27-46 (368)
57 2qu8_A Putative nucleolar GTP- 57.3 3.6 0.00012 32.1 1.2 10 69-78 77-86 (228)
58 2qt1_A Nicotinamide riboside k 57.0 8.7 0.0003 29.4 3.4 14 84-97 36-49 (207)
59 3ksx_A Nitrate transport prote 56.9 10 0.00035 30.9 4.0 39 65-105 28-67 (324)
60 4aq4_A SN-glycerol-3-phosphate 56.7 25 0.00087 28.9 6.5 48 68-117 6-55 (419)
61 3otg_A CALG1; calicheamicin, T 56.6 8.4 0.00029 32.0 3.5 34 64-98 17-53 (412)
62 3ixr_A Bacterioferritin comigr 56.6 14 0.00047 28.0 4.5 26 79-105 68-95 (179)
63 4f3p_A Glutamine-binding perip 56.3 10 0.00034 29.0 3.7 32 78-113 45-76 (249)
64 2o8v_B Thioredoxin 1; disulfid 56.2 11 0.00039 26.8 3.7 37 66-102 42-79 (128)
65 1svj_A Potassium-transporting 55.8 6.7 0.00023 30.6 2.6 32 59-90 14-46 (156)
66 2vvt_A Glutamate racemase; iso 55.5 21 0.00073 30.0 5.9 15 83-97 37-51 (290)
67 1xg8_A Hypothetical protein SA 54.2 6.8 0.00023 29.9 2.3 25 72-96 18-46 (111)
68 2kn9_A Rubredoxin; metalloprot 54.1 9.9 0.00034 27.4 3.0 12 68-79 25-36 (81)
69 2x7q_A Ca3427, possible thiami 54.0 14 0.00047 30.3 4.3 12 95-106 43-54 (321)
70 1zxj_A MPN555, hypothetical pr 53.9 15 0.00053 30.5 4.6 38 57-96 35-72 (218)
71 1uj8_A ORF3, hypothetical prot 53.7 10 0.00035 27.3 3.0 18 81-98 18-35 (77)
72 4hps_A Pyrrolidone-carboxylate 53.7 21 0.00072 29.8 5.5 28 71-98 61-88 (228)
73 3kl4_B DPAP B, YSCV, signal pe 53.3 3.9 0.00013 25.8 0.7 9 31-39 33-41 (42)
74 2uvj_A TOGB, ABC type periplas 53.0 19 0.00066 30.0 5.2 42 65-106 5-46 (408)
75 3p7i_A PHND, subunit of alkylp 52.6 8.9 0.0003 32.4 3.0 34 66-100 14-50 (321)
76 2gs3_A PHGPX, GPX-4, phospholi 52.4 19 0.00064 27.1 4.6 37 67-104 52-91 (185)
77 3f4s_A Alpha-DSBA1, putative u 51.6 27 0.00092 28.2 5.7 60 58-117 33-96 (226)
78 2vup_A Glutathione peroxidase- 49.5 31 0.0011 26.0 5.4 37 67-104 51-90 (190)
79 2dw3_A Intrinsic membrane prot 49.5 23 0.0008 25.4 4.3 25 6-30 35-59 (77)
80 3av0_A DNA double-strand break 49.3 30 0.001 29.8 5.9 25 81-105 48-73 (386)
81 1elj_A Maltodextrin-binding pr 49.0 23 0.00077 29.4 4.9 39 66-104 4-44 (381)
82 2fgx_A Putative thioredoxin; N 48.7 13 0.00044 27.2 3.0 29 66-94 30-58 (107)
83 2yln_A Putative ABC transporte 48.6 23 0.00078 28.1 4.7 26 78-104 79-104 (283)
84 1oix_A RAS-related protein RAB 48.4 5.3 0.00018 30.2 0.9 12 34-45 4-15 (191)
85 3qt1_I DNA-directed RNA polyme 48.1 2.9 9.8E-05 32.5 -0.7 14 68-81 44-57 (133)
86 2zzj_A Glucuronan lyase A; bet 47.5 9.3 0.00032 32.5 2.3 17 172-188 164-180 (238)
87 3qfq_A Large T antigen; origin 47.5 23 0.00077 27.9 4.3 45 46-93 10-57 (135)
88 4eun_A Thermoresistant glucoki 46.5 56 0.0019 24.8 6.6 21 84-104 44-64 (200)
89 2d2a_A SUFA protein; iron-sulf 45.8 14 0.00049 28.6 3.0 16 79-94 45-60 (145)
90 2dvz_A BUGE, putative exported 45.7 12 0.0004 32.0 2.7 24 79-103 34-57 (314)
91 3hvu_A Hypoxanthine phosphorib 45.3 10 0.00036 30.8 2.2 42 49-95 16-57 (204)
92 2xci_A KDO-transferase, 3-deox 44.8 12 0.0004 31.9 2.6 29 70-99 44-72 (374)
93 2ew1_A RAS-related protein RAB 44.3 6 0.0002 30.6 0.6 25 68-96 75-99 (201)
94 3cio_A ETK, tyrosine-protein k 44.1 4.8 0.00016 33.8 0.0 36 79-116 85-125 (299)
95 3dml_A Putative uncharacterize 44.1 7.4 0.00025 29.0 1.1 80 63-149 17-106 (116)
96 3cn5_A Aquaporin; membrane pro 43.8 7.5 0.00026 33.8 1.2 25 101-125 54-78 (304)
97 1xhj_A Nitrogen fixation prote 43.8 29 0.001 25.0 4.2 33 65-97 37-74 (88)
98 3fkq_A NTRC-like two-domain pr 43.6 18 0.00063 30.9 3.7 37 64-106 45-81 (373)
99 3l9v_A Putative thiol-disulfid 43.4 31 0.0011 26.4 4.7 55 65-119 15-74 (189)
100 3mx7_A FAS apoptotic inhibitor 43.3 16 0.00055 26.8 2.7 19 171-189 25-43 (90)
101 2kdb_A Homocysteine-responsive 43.3 16 0.00056 26.3 2.8 19 78-96 44-62 (99)
102 3ph3_A Ribose-5-phosphate isom 43.3 17 0.00057 29.5 3.1 33 64-98 17-49 (169)
103 2iss_D Glutamine amidotransfer 43.2 17 0.00057 28.6 3.1 13 79-91 29-41 (208)
104 3llq_A Aquaporin Z 2; aquapori 43.2 5 0.00017 34.1 0.0 9 111-119 113-121 (256)
105 1xfl_A Thioredoxin H1; AT3G510 43.1 6.5 0.00022 27.9 0.6 39 66-104 40-78 (124)
106 1d2d_A TRNA synthetase, tRNA l 43.1 11 0.00037 25.4 1.6 22 17-39 37-58 (59)
107 2kan_A Uncharacterized protein 42.7 32 0.0011 24.1 4.2 15 79-93 34-48 (94)
108 3rdd_A Peptidyl-prolyl CIS-tra 42.7 21 0.0007 28.6 3.6 27 60-86 32-59 (184)
109 1wc3_A Adenylate cyclase; solu 42.4 14 0.00049 29.4 2.6 14 67-80 27-40 (219)
110 2kjr_A CG11242; UBL, ubiquitin 42.2 38 0.0013 24.1 4.6 14 80-93 38-51 (95)
111 1rwu_A Hypothetical UPF0250 pr 41.6 29 0.001 25.9 4.0 17 82-98 50-67 (109)
112 4faj_A PRGZ; substrate binding 41.6 5.5 0.00019 36.0 0.0 25 73-97 38-62 (564)
113 3iot_A Maltose-binding protein 40.8 5.8 0.0002 34.3 0.0 7 60-66 438-444 (449)
114 2j6v_A UV endonuclease, UVDE; 40.7 9.7 0.00033 32.4 1.4 11 66-76 21-31 (301)
115 3d8t_A Uroporphyrinogen-III sy 40.7 39 0.0013 27.7 5.1 31 82-114 44-80 (286)
116 4amg_A Snogd; transferase, pol 40.7 11 0.00038 31.1 1.7 25 67-92 22-49 (400)
117 3m63_B Ubiquitin domain-contai 40.7 21 0.00073 25.4 3.1 30 64-93 27-61 (101)
118 4ddd_A Immunogenic protein; ss 40.4 29 0.00098 29.1 4.3 29 78-106 45-76 (327)
119 2i81_A 2-Cys peroxiredoxin; st 40.1 35 0.0012 26.7 4.6 39 66-105 54-96 (213)
120 2p31_A CL683, glutathione pero 40.1 37 0.0013 25.3 4.5 39 65-104 49-91 (181)
121 2es4_D Lipase chaperone; prote 39.7 6.1 0.00021 34.9 0.0 12 83-94 106-117 (332)
122 2c07_A 3-oxoacyl-(acyl-carrier 39.5 6.2 0.00021 32.0 0.0 6 65-70 68-73 (285)
123 1d1d_A Protein (capsid protein 39.5 6.2 0.00021 34.0 0.0 45 79-123 38-90 (262)
124 1u83_A Phosphosulfolactate syn 39.3 19 0.00063 31.4 3.0 23 49-74 24-50 (276)
125 2z8f_A Galacto-N-biose/lacto-N 39.1 69 0.0023 26.8 6.5 40 67-106 17-57 (412)
126 3tc3_A UV damage endonuclease; 38.9 9.8 0.00034 33.4 1.2 12 63-74 17-28 (310)
127 3gyk_A 27KDA outer membrane pr 38.8 1.1E+02 0.0038 22.3 7.2 49 59-107 17-65 (175)
128 3lv8_A DTMP kinase, thymidylat 38.8 80 0.0027 25.7 6.7 44 49-92 9-54 (236)
129 2jfq_A Glutamate racemase; cel 38.7 22 0.00076 29.8 3.3 14 84-97 36-49 (286)
130 3u5r_E Uncharacterized protein 38.6 37 0.0013 26.4 4.4 37 67-104 62-101 (218)
131 4dve_A Biotin transporter BIOY 38.4 6.6 0.00023 32.3 0.0 6 35-40 3-8 (198)
132 2zyd_A 6-phosphogluconate dehy 38.4 7.3 0.00025 35.3 0.3 6 108-113 92-97 (480)
133 3gmf_A Protein-disulfide isome 37.7 81 0.0028 24.9 6.4 52 59-110 10-65 (205)
134 2l7r_A Ubiquitin-like protein 37.2 17 0.00059 25.2 2.1 25 65-93 27-51 (93)
135 4az9_A Sorting nexin-24; prote 37.0 35 0.0012 25.5 3.9 15 80-94 62-76 (129)
136 1pd6_A Cardiac MYBP-C;, myosin 36.6 14 0.0005 25.3 1.6 12 43-54 8-19 (104)
137 3hju_A Monoglyceride lipase; a 36.5 95 0.0032 24.2 6.6 16 77-92 71-86 (342)
138 3dwv_A Glutathione peroxidase- 36.4 60 0.0021 24.3 5.2 37 65-104 46-88 (187)
139 4dt4_A FKBP-type 16 kDa peptid 36.2 33 0.0011 27.2 3.8 15 62-76 25-39 (169)
140 2obi_A PHGPX, GPX-4, phospholi 36.0 44 0.0015 24.8 4.4 39 65-104 47-89 (183)
141 2k4z_A DSRR; ISCA/SUFA/HESB li 35.7 37 0.0013 25.4 3.8 15 79-93 27-41 (125)
142 1rlh_A Conserved hypothetical 35.5 29 0.001 28.2 3.4 21 78-98 36-56 (173)
143 1zye_A Thioredoxin-dependent p 35.5 69 0.0024 25.1 5.6 39 66-105 58-100 (220)
144 3gha_A Disulfide bond formatio 35.4 1E+02 0.0034 24.0 6.5 50 58-107 23-76 (202)
145 2f8a_A Glutathione peroxidase 35.4 47 0.0016 25.9 4.6 37 67-104 50-89 (208)
146 3qwq_B Adnectin; cell surface 35.3 8.5 0.00029 27.5 0.2 11 31-41 104-114 (114)
147 3b9f_I Protein C inhibitor; mi 35.3 7.9 0.00027 34.1 0.0 8 132-139 79-86 (395)
148 2haq_A Cyclophilin; rotamase, 35.3 33 0.0011 27.2 3.7 29 59-89 20-48 (172)
149 4axs_A Carbamate kinase; oxido 35.3 8 0.00027 34.0 0.0 13 81-93 50-62 (332)
150 3okg_A Restriction endonucleas 35.2 13 0.00046 31.1 1.4 23 34-56 2-25 (412)
151 4h1z_A Enolase Q92ZS5; dehydra 35.2 8 0.00027 34.2 0.0 10 129-138 161-170 (412)
152 3kh7_A Thiol:disulfide interch 35.2 57 0.0019 24.2 4.9 35 66-103 60-95 (176)
153 2cxh_A Probable BRIX-domain ri 35.1 28 0.00097 28.8 3.4 31 66-98 34-64 (217)
154 3p8b_A DNA-directed RNA polyme 34.9 8.9 0.00031 27.8 0.2 19 64-82 17-35 (81)
155 2b3f_A Glucose-binding protein 34.9 68 0.0023 26.7 5.8 49 67-116 2-51 (400)
156 1wue_A Mandelate racemase/muco 34.8 8.2 0.00028 33.6 0.0 12 128-139 134-145 (386)
157 3cps_A Glyceraldehyde 3-phosph 34.6 22 0.00077 31.4 2.8 33 68-104 18-50 (354)
158 1z6g_A Guanylate kinase; struc 34.4 23 0.00079 27.8 2.6 15 84-98 38-53 (218)
159 1jxh_A Phosphomethylpyrimidine 34.3 8.4 0.00029 31.7 0.0 8 94-101 95-102 (288)
160 4aaj_A N-(5'-phosphoribosyl)an 34.3 11 0.00037 31.3 0.7 37 65-109 18-55 (228)
161 2yjn_A ERYCIII, glycosyltransf 34.1 31 0.0011 29.4 3.6 10 83-92 38-47 (441)
162 1wuf_A Hypothetical protein LI 34.1 8.5 0.00029 33.6 0.0 10 129-138 135-144 (393)
163 2a2p_A Selenoprotein M, SELM p 33.7 31 0.001 26.8 3.1 37 63-100 12-51 (129)
164 4a5p_A Protein MXIA, protein V 33.3 8.9 0.00031 34.5 0.0 40 130-188 82-121 (383)
165 2cdn_A Adenylate kinase; phosp 33.1 15 0.00051 27.9 1.2 8 34-41 4-11 (201)
166 1hxv_A Trigger factor; FKBP fo 33.1 19 0.00067 26.2 1.8 17 60-76 28-44 (113)
167 3i33_A Heat shock-related 70 k 33.1 8.2 0.00028 32.9 -0.3 11 110-120 137-147 (404)
168 3tcm_A Alanine aminotransferas 33.0 8.7 0.0003 34.0 -0.1 19 81-99 46-67 (500)
169 2j8k_A NP275-NP276; pentapepti 32.7 13 0.00044 29.6 0.8 8 34-41 4-11 (201)
170 2p5s_A RAS and EF-hand domain 32.6 12 0.00041 28.1 0.6 6 35-40 5-10 (199)
171 3m95_A Autophagy related prote 32.4 11 0.00038 29.0 0.4 35 69-104 10-45 (125)
172 2zvr_A Uncharacterized protein 32.2 48 0.0016 26.5 4.2 10 92-101 54-63 (290)
173 4hnl_A Mandelate racemase/muco 32.1 9.6 0.00033 33.6 0.0 12 128-139 126-137 (421)
174 3uor_A ABC transporter sugar b 32.1 69 0.0023 27.4 5.5 47 67-116 29-75 (458)
175 3oc3_A Helicase MOT1, MOT1; re 32.0 9.7 0.00033 37.3 0.0 8 34-41 3-10 (800)
176 3o5c_A Cytochrome C551 peroxid 32.0 12 0.00039 32.9 0.5 22 35-56 2-23 (320)
177 3ney_A 55 kDa erythrocyte memb 31.6 24 0.00082 28.3 2.3 12 84-95 34-45 (197)
178 3l9s_A Thiol:disulfide interch 31.2 64 0.0022 24.9 4.7 52 65-116 22-78 (191)
179 4g2c_A DYP2; DYE peroxidase, o 30.9 10 0.00035 35.2 0.0 48 70-117 32-89 (493)
180 2pvu_A ARTJ; basic amino acid 30.7 87 0.003 24.1 5.4 34 78-115 63-96 (272)
181 3c3r_A Programmed cell death 6 30.7 10 0.00036 33.3 0.0 10 84-93 41-50 (380)
182 3a5i_A Flagellar biosynthesis 30.7 10 0.00036 34.1 0.0 16 83-98 85-104 (389)
183 2f4l_A Acetamidase, putative; 30.5 11 0.00038 32.9 0.1 23 54-77 27-49 (297)
184 2krk_A 26S protease regulatory 30.4 20 0.00067 25.0 1.4 7 35-41 3-9 (86)
185 3rlb_A THIT; S-component, ECF 30.3 11 0.00037 30.8 0.0 6 35-40 3-8 (192)
186 1bpv_A Titin, A71, connectin; 30.2 19 0.00066 25.4 1.4 7 68-74 45-51 (112)
187 2kk8_A Uncharacterized protein 30.1 46 0.0016 22.7 3.3 26 64-93 19-44 (84)
188 3dfz_A SIRC, precorrin-2 dehyd 29.9 11 0.00037 31.2 -0.1 6 65-70 54-59 (223)
189 2wgn_B Inhibitor of cysteine p 29.7 65 0.0022 24.5 4.4 23 62-84 39-63 (132)
190 4emh_A Probable U6 snRNA-assoc 29.6 19 0.00065 26.6 1.3 19 63-81 24-42 (105)
191 1zbm_A Hypothetical protein AF 29.5 14 0.00048 29.3 0.6 11 82-92 47-57 (280)
192 2vmh_A GH95CBM51, fibronectin 29.3 33 0.0011 26.6 2.7 18 172-189 89-106 (151)
193 2qf7_A Pyruvate carboxylase pr 29.2 12 0.00039 38.0 0.0 18 83-100 83-100 (1165)
194 2oar_A Large-conductance mecha 29.2 12 0.0004 30.7 0.0 48 79-132 22-73 (174)
195 3a4u_B Multiple coagulation fa 29.0 12 0.0004 27.6 0.0 9 82-90 46-54 (143)
196 3hkx_A Amidase; alpha-beta-BET 29.0 45 0.0015 27.3 3.6 38 64-101 17-61 (283)
197 3mq9_A Bone marrow stromal ant 28.9 39 0.0013 29.6 3.4 25 78-103 30-54 (471)
198 2kj5_A Phage integrase; GFT PS 28.5 33 0.0011 23.1 2.3 8 33-40 108-115 (116)
199 3bci_A Disulfide bond protein 28.4 1.5E+02 0.0052 21.9 6.3 47 60-106 7-57 (186)
200 4f27_A Clumping factor B; DEV- 28.4 12 0.00042 31.7 0.0 6 35-40 5-10 (363)
201 2ke9_A Caskin-2; SH3 domain, A 28.4 33 0.0011 23.5 2.3 24 49-72 23-48 (83)
202 1r26_A Thioredoxin; redox-acti 28.3 25 0.00084 25.0 1.7 39 66-104 39-77 (125)
203 4e4j_A Arginine deiminase; L-a 28.1 12 0.00042 33.3 0.0 17 80-98 81-97 (433)
204 2qrj_A Saccharopine dehydrogen 28.1 12 0.00042 33.7 0.0 21 63-83 52-73 (394)
205 2jr5_A UPF0350 protein VC_2471 28.1 16 0.00055 26.6 0.6 16 18-33 53-68 (94)
206 2axq_A Saccharopine dehydrogen 28.0 12 0.00042 33.8 -0.0 9 175-183 170-178 (467)
207 4ar0_A Type IV pilus biogenesi 28.0 70 0.0024 24.0 4.3 24 63-87 29-52 (128)
208 3qmx_A Glutaredoxin A, glutare 28.0 39 0.0013 23.5 2.7 37 63-99 13-49 (99)
209 1rw2_A ATP-dependent DNA helic 28.0 1.5E+02 0.0053 23.0 6.4 9 83-91 38-46 (152)
210 1yqb_A Ubiquilin 3; structural 27.8 77 0.0026 22.2 4.3 16 78-93 40-55 (100)
211 3q7a_A Farnesyltransferase alp 27.8 20 0.0007 31.3 1.3 27 63-91 40-66 (349)
212 1qwz_A NPQTN specific sortase 27.7 21 0.0007 29.7 1.3 9 81-89 29-37 (235)
213 2r5o_A Putative ATP binding co 27.7 13 0.00044 29.2 0.0 9 35-43 4-12 (188)
214 3hd5_A Thiol:disulfide interch 27.6 1.9E+02 0.0065 21.5 7.3 52 65-116 26-78 (195)
215 2hup_A RAS-related protein RAB 27.5 16 0.00056 27.6 0.6 8 34-41 4-11 (201)
216 2qv7_A Diacylglycerol kinase D 27.4 72 0.0025 26.8 4.7 36 68-103 27-65 (337)
217 2rhc_B Actinorhodin polyketide 27.4 28 0.00095 28.1 2.0 17 35-51 1-17 (277)
218 3h93_A Thiol:disulfide interch 27.3 1.3E+02 0.0046 22.3 5.8 41 65-106 26-66 (192)
219 2ivd_A PPO, PPOX, protoporphyr 27.2 13 0.00045 31.9 0.0 7 35-41 4-10 (478)
220 2a7l_A Hypothetical ubiquitin- 27.2 21 0.00072 27.2 1.2 19 79-97 25-43 (136)
221 2y78_A Peptidyl-prolyl CIS-tra 27.2 28 0.00096 25.9 1.9 13 63-75 44-56 (133)
222 2gov_A P22HBP, heme-binding pr 27.1 72 0.0025 25.5 4.4 14 79-92 61-74 (195)
223 2nmm_A 14 kDa phosphohistidine 27.1 36 0.0012 26.6 2.5 20 83-102 113-132 (135)
224 1zuh_A Shikimate kinase; alpha 27.1 12 0.00039 27.6 -0.3 10 58-67 12-21 (168)
225 2ihi_A Pyrophosphate synthase; 26.9 30 0.001 30.9 2.3 18 77-94 35-52 (395)
226 2lwx_A Zuotin; J-protein, mole 26.9 13 0.00046 28.2 -0.0 17 79-95 23-39 (108)
227 2lfh_A DNA-binding protein inh 26.8 20 0.00069 25.0 0.9 21 69-89 20-40 (68)
228 2wkq_A NPH1-1, RAS-related C3 26.8 14 0.00049 29.7 0.2 6 69-74 35-40 (332)
229 1p99_A Hypothetical protein PG 26.7 85 0.0029 26.3 5.0 44 66-113 39-84 (295)
230 2bgs_A Aldose reductase; holoe 26.6 14 0.00047 32.0 0.0 34 79-116 60-94 (344)
231 2kjq_A DNAA-related protein; s 26.6 25 0.00086 26.2 1.5 10 35-44 3-12 (149)
232 3kg0_A Snoab; polyketide, anth 26.5 78 0.0027 23.4 4.3 31 66-97 24-57 (128)
233 3ico_A 6PGL, 6-phosphogluconol 26.5 22 0.00076 29.9 1.3 59 49-112 10-75 (268)
234 3b0g_A NII3, nitrite reductase 26.5 14 0.00047 34.7 0.0 6 82-87 76-81 (591)
235 2her_A Fragment, farnesyl pyro 26.5 71 0.0024 28.3 4.6 19 77-95 27-45 (368)
236 1z0s_A Probable inorganic poly 26.4 53 0.0018 28.0 3.7 15 82-98 42-56 (278)
237 4b1m_A Levanase; hydrolase, CB 26.4 14 0.00048 29.0 0.0 17 172-188 141-157 (185)
238 2o3h_A DNA-(apurinic or apyrim 26.1 1.3E+02 0.0045 23.4 5.8 37 61-97 22-59 (285)
239 1p5q_A FKBP52, FK506-binding p 26.0 40 0.0014 27.7 2.8 10 64-73 43-52 (336)
240 2lt9_A Protein SLC8A3; NCX, NC 31.9 14 0.00049 29.3 0.0 13 65-77 41-53 (157)
241 2jeo_A Uridine-cytidine kinase 25.8 20 0.00067 28.5 0.8 9 58-66 30-38 (245)
242 3ces_A MNMG, tRNA uridine 5-ca 25.8 14 0.00049 35.2 0.0 10 34-43 4-13 (651)
243 3c0t_B Mediator of RNA polymer 25.8 9.3 0.00032 22.9 -0.8 13 17-29 10-22 (33)
244 2j1l_A RHO-related GTP-binding 25.8 32 0.0011 26.3 2.0 13 67-79 34-46 (214)
245 2wci_A Glutaredoxin-4; redox-a 25.6 6.7 0.00023 29.7 -1.9 15 75-92 49-63 (135)
246 4iiu_A 3-oxoacyl-[acyl-carrier 25.6 2E+02 0.007 22.5 6.9 50 65-117 50-100 (267)
247 2f5x_A BUGD; periplasmic bindi 25.4 38 0.0013 28.8 2.6 24 78-102 31-54 (312)
248 2otn_A Diaminopimelate epimera 25.4 30 0.001 29.1 1.9 10 83-92 52-61 (308)
249 3iyz_A Aquaporin-4; water tran 25.3 43 0.0015 29.7 3.0 17 103-119 47-63 (340)
250 3bux_B E3 ubiquitin-protein li 25.2 20 0.00067 32.0 0.8 9 32-40 12-20 (329)
251 3t21_A Endo-type membrane-boun 25.1 15 0.00052 29.7 0.0 12 156-167 118-129 (206)
252 2j9u_B VPS36, vacuolar protein 25.0 11 0.00038 27.0 -0.7 24 68-91 38-61 (76)
253 3thi_A Protein (thiaminase I); 24.7 72 0.0024 26.0 4.1 36 67-102 2-38 (371)
254 2a1j_B DNA excision repair pro 24.6 19 0.00064 25.1 0.4 7 35-41 5-11 (91)
255 3t1i_A Double-strand break rep 24.1 1.8E+02 0.0062 26.1 6.9 55 65-119 30-99 (431)
256 2hw4_A 14 kDa phosphohistidine 24.1 44 0.0015 26.4 2.5 20 83-102 122-141 (144)
257 3kxq_A Triosephosphate isomera 24.0 96 0.0033 26.6 4.9 51 64-116 25-79 (275)
258 3hz8_A Thiol:disulfide interch 24.0 1E+02 0.0035 23.5 4.7 40 66-106 26-65 (193)
259 3c48_A Predicted glycosyltrans 24.0 54 0.0018 27.2 3.2 16 77-92 43-58 (438)
260 2i7a_A Calpain 13; calcium-dep 23.9 44 0.0015 25.3 2.5 11 82-92 23-33 (174)
261 3q9s_A DNA-binding response re 23.8 43 0.0015 26.4 2.5 21 83-103 71-91 (249)
262 1ti3_A Thioredoxin H, PTTRXH1; 23.8 67 0.0023 21.2 3.1 41 65-105 26-67 (113)
263 4fe7_A Xylose operon regulator 23.7 64 0.0022 27.3 3.7 7 35-41 5-11 (412)
264 3icu_A E3 ubiquitin-protein li 23.6 32 0.0011 28.0 1.7 56 111-172 118-175 (194)
265 3tut_A RNA 3'-terminal phospha 23.5 17 0.00058 32.5 0.0 15 117-131 120-134 (358)
266 4emk_A U6 snRNA-associated SM- 23.5 17 0.00058 26.4 0.0 18 64-81 29-46 (94)
267 4gmn_B 60S ribosomal protein L 23.4 24 0.00083 23.2 0.7 9 32-40 41-49 (49)
268 3ot5_A UDP-N-acetylglucosamine 23.3 33 0.0011 29.7 1.8 33 71-103 29-68 (403)
269 2iz6_A Molybdenum cofactor car 23.3 72 0.0025 25.2 3.7 31 65-98 13-48 (176)
270 1su1_A Hypothetical protein YF 23.2 90 0.0031 24.3 4.2 36 68-103 26-63 (208)
271 2omo_A DUF176; structural geno 23.2 90 0.0031 22.6 4.0 31 66-96 24-57 (124)
272 3tbn_A Putative uncharacterize 23.1 49 0.0017 24.1 2.4 10 72-81 31-40 (87)
273 3uf8_A Ubiquitin-like protein 23.0 66 0.0023 25.8 3.5 26 64-89 29-54 (209)
274 2ygr_A Uvrabc system protein A 23.0 18 0.0006 36.5 0.0 13 93-105 196-208 (993)
275 3ec7_A Putative dehydrogenase; 23.0 72 0.0025 26.9 3.9 17 84-100 37-53 (357)
276 2vng_A CPE0329; family 51 carb 22.9 49 0.0017 26.7 2.7 15 175-189 109-123 (180)
277 3s94_A LRP-6, low-density lipo 22.8 19 0.00064 33.4 0.2 7 35-41 2-8 (619)
278 2nnz_A Hypothetical protein; b 22.8 35 0.0012 26.8 1.7 8 34-41 4-11 (153)
279 3ha9_A Uncharacterized thiored 22.8 1.4E+02 0.0048 21.2 5.0 39 66-104 39-77 (165)
280 1vjv_A Ubiquitin carboxyl-term 22.7 27 0.00094 29.9 1.2 9 59-67 25-33 (415)
281 3efz_A 14-3-3 protein; 14-3-3, 22.5 8.2 0.00028 33.4 -2.2 35 80-114 43-77 (268)
282 3ijp_A DHPR, dihydrodipicolina 22.3 73 0.0025 27.2 3.8 35 64-101 18-52 (288)
283 3kxe_A Toxin protein PARE-1; c 22.0 19 0.00065 25.9 0.0 32 79-120 25-56 (110)
284 3ug3_A Alpha-L-arabinofuranosi 22.0 50 0.0017 30.6 2.9 23 78-100 207-229 (504)
285 3p8k_A Hydrolase, carbon-nitro 21.8 1.5E+02 0.0052 24.1 5.5 39 64-102 17-62 (281)
286 1p4w_A RCSB; solution structur 21.7 23 0.0008 25.3 0.5 11 34-44 4-14 (99)
287 1rcu_A Conserved hypothetical 21.6 63 0.0022 26.1 3.1 24 77-102 42-66 (195)
288 1ynp_A Oxidoreductase, AKR11C1 21.5 60 0.002 27.3 3.1 36 81-117 50-85 (317)
289 3vu7_H DNA repair protein REV1 21.3 32 0.0011 26.2 1.2 14 80-93 36-49 (124)
290 2gco_A H9, RHO-related GTP-bin 21.2 68 0.0023 23.9 3.0 26 67-93 25-50 (201)
291 1mgp_A Hypothetical protein TM 21.1 44 0.0015 28.8 2.2 16 67-82 27-42 (313)
292 2il1_A RAB12; G-protein, GDP, 21.0 25 0.00085 26.2 0.5 8 70-77 77-84 (192)
293 2key_A Putative phage integras 21.0 32 0.0011 23.1 1.0 7 31-37 104-110 (112)
294 3ol1_A Vimentin; structural ge 21.0 20 0.0007 26.8 0.0 9 35-43 3-11 (119)
295 2grj_A Dephospho-COA kinase; T 20.9 14 0.00049 29.0 -0.9 10 58-67 17-26 (192)
296 1w4v_A Thioredoxin, mitochondr 20.8 91 0.0031 21.2 3.5 38 66-103 33-71 (119)
297 2fv8_A H6, RHO-related GTP-bin 20.8 22 0.00076 26.8 0.2 22 35-56 2-23 (207)
298 2grx_C Protein TONB; beta barr 20.8 21 0.00071 30.0 0.0 6 35-40 4-9 (229)
299 1veh_A NIFU-like protein hirip 20.8 46 0.0016 24.1 1.9 33 65-97 44-81 (92)
300 3cpt_A Mitogen-activated prote 20.7 21 0.00071 28.3 0.0 14 83-96 22-38 (143)
301 3jtz_A Integrase; four strande 20.7 21 0.00071 25.3 0.0 8 32-39 80-87 (88)
302 3njr_A Precorrin-6Y methylase; 20.6 21 0.00072 27.6 0.0 16 95-110 77-92 (204)
303 2nn6_I 3'-5' exoribonuclease C 20.4 31 0.0011 28.1 1.0 22 34-56 4-26 (209)
304 1qw9_A Arabinosidase, alpha-L- 20.3 95 0.0032 27.9 4.3 27 78-104 190-218 (502)
305 3ber_A Probable ATP-dependent 20.1 22 0.00075 28.4 0.0 22 35-56 2-23 (249)
306 4hz2_A Glutathione S-transfera 20.1 24 0.00082 27.3 0.2 12 67-78 22-33 (230)
307 3rsc_A CALG2; TDP, enediyne, s 20.1 66 0.0023 26.6 3.0 26 67-92 20-47 (415)
308 3lnc_A Guanylate kinase, GMP k 20.1 25 0.00085 27.4 0.3 9 58-66 32-40 (231)
No 1
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=99.65 E-value=1.5e-16 Score=119.81 Aligned_cols=39 Identities=26% Similarity=0.629 Sum_probs=36.1
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCCC-eEEeccc
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPG-IDVVLAN 102 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~-i~V~G~n 102 (190)
+.++|+|+||++|+|+..|.++++.|.++||+ +.|+++.
T Consensus 1 ~~~~V~I~YC~~C~y~~ra~~laqeLl~~Fp~~l~V~~~l 40 (96)
T 2npb_A 1 MALAVRVVYSGACGYKPKYLQLKEKLEHEFPGCLDICGEG 40 (96)
T ss_dssp CCEEEEEECCCCSCHHHHHHHHHHHHHHHSBTTEEEEECC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCcceEEEEEE
Confidence 45789999999999999999999999999999 8888884
No 2
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=99.46 E-value=8.5e-14 Score=106.41 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=30.4
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i 96 (190)
.++|+|+||++|+|+..|..|++.|.++||+.
T Consensus 5 ~p~V~I~YC~~C~~~~Ra~~laqeLl~tF~~~ 36 (104)
T 2oka_A 5 KPEIVITYCTQCQWLLRAAWLAQELLSTFADD 36 (104)
T ss_dssp CCEEEEEEETTTTCHHHHHHHHHHHHHHSTTT
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHHHHcCcc
Confidence 47999999999999999999999999999984
No 3
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=99.44 E-value=1.3e-13 Score=105.50 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=30.3
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i 96 (190)
.++|+|+||++|+|+..+..|++.|.++||+.
T Consensus 3 ~~~V~I~YC~~C~w~~Ra~~laqeLl~tF~~~ 34 (105)
T 2p0g_A 3 KAQIEIYYCRQCNWMLRSAWLSQELLHTFSEE 34 (105)
T ss_dssp CEEEEEEEETTTTCHHHHHHHHHHHHHHTTTT
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHHHHcCcc
Confidence 47899999999999999999999999999984
No 4
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=99.44 E-value=1e-13 Score=106.03 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=30.2
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i 96 (190)
-++|+|+||.+|+|+..|.++++.|.++||+.
T Consensus 7 ~~~V~I~YC~~C~~~~Ra~~laqeLl~tF~~~ 38 (105)
T 2fa8_A 7 KPRIAIRYCTQCNWLLRAGWMAQEILQTFASD 38 (105)
T ss_dssp CCEEEEEEETTTTCHHHHHHHHHHHHHHHGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCcc
Confidence 37899999999999999999999999999984
No 5
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=99.34 E-value=5.7e-13 Score=103.67 Aligned_cols=39 Identities=23% Similarity=0.705 Sum_probs=35.3
Q ss_pred cCCCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEec
Q 029622 62 IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVL 100 (190)
Q Consensus 62 ~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G 100 (190)
.+.|++|+|+||..|+|...+.++++.|.+.||+.+|++
T Consensus 21 ~~~~vrV~IeYC~~C~~~~ra~~laqeLl~tFp~~~V~l 59 (117)
T 2ljk_A 21 PGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIES 59 (117)
T ss_dssp TTCSCCCEEEECTTTTCHHHHHHHHHHHTTTCSSSCCEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCcceEEE
Confidence 367789999999999999999999999999999976654
No 6
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=98.87 E-value=2.1e-09 Score=82.62 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=29.3
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCC
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPG 95 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~ 95 (190)
.++|+|+||..|+|...+..+++.|.++||+
T Consensus 8 ~~~V~I~YC~~C~w~lRa~~laqeLl~tF~~ 38 (108)
T 2ojl_A 8 PPRIAIQYCTQCQWLLRAAWMAQELLSTFGA 38 (108)
T ss_dssp CCEEEEEEETTTTCHHHHHHHHHHHHHHHGG
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 5899999999999999999999999999986
No 7
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=98.87 E-value=4e-09 Score=80.99 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=30.7
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i 96 (190)
..++|+|+||..|+|...+..+++.|.++||+.
T Consensus 11 ~~p~V~I~YC~~C~w~lRa~~laqeLl~tF~~~ 43 (107)
T 3dex_A 11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETE 43 (107)
T ss_dssp CCEEEEEEEETTTTCHHHHHHHHHHHHHHSTTT
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHHHhcccc
Confidence 468999999999999999999999999999964
No 8
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=96.40 E-value=0.0045 Score=52.84 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=30.0
Q ss_pred CCCceEEEEeccCcC--cchhHHHHHHHHHhhCCCeEEecccCCCC
Q 029622 63 GYGSTVNINFCASCS--YRGTAITMKRMLETQFPGIDVVLANYPPP 106 (190)
Q Consensus 63 ~~G~tV~i~YC~SCG--Y~~~f~e~k~~L~~~yP~i~V~G~nYpPp 106 (190)
..+.+++|.+|..-+ ....++++.+.-++++|+++|+-+.++..
T Consensus 25 ~~~gk~~it~W~~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~ 70 (433)
T 4gqo_A 25 DDNGKTKVTFWAAPNPTQVKYWDEMAKAYEKENPDVTIEVSQMKES 70 (433)
T ss_dssp ----CEEEEEEECSCHHHHHHHHHHHHHHHHHCTTEEEEEEECCCS
T ss_pred CCCCCEEEEEEeCCCchHHHHHHHHHHHHHHHCcCeEEEEEEcCCc
Confidence 344567888886432 34557777777889999999998887753
No 9
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=95.51 E-value=0.028 Score=47.78 Aligned_cols=48 Identities=23% Similarity=0.190 Sum_probs=34.0
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHh
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVV 116 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l 116 (190)
.+|++-...+-.....++++.+..++++|+++|+-+.++ +..+..|+.
T Consensus 28 ~~l~~w~~~~~~~~~~~~~~~~~f~~~~pgi~V~~~~~~---~~~~~~kl~ 75 (412)
T 3k01_A 28 GTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVP---FGEANAKFK 75 (412)
T ss_dssp EEEEEEECCCTTTHHHHHHHHHTHHHHCTTEEEEEEECC---HHHHHHHHH
T ss_pred cEEEEecCCCCcchHHHHHHHHHHHHHCcCeEEEEEecC---hHHHHHHHH
Confidence 367776665533567788899999999999999888773 444444443
No 10
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=95.26 E-value=0.04 Score=46.92 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=25.8
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccC
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANY 103 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nY 103 (190)
.||++..+.+ .....++++.+..++++|+++|+-+.+
T Consensus 19 ~tl~~~~~~~-~~~~~~~~~~~~f~~~~p~i~V~~~~~ 55 (401)
T 2heu_A 19 VTIEYFNQKK-EMTKTLEEITRDFEKENPKIKVKVVNV 55 (401)
T ss_dssp EEEEEECCCG-GGHHHHHHHHHHHHHHCTTEEEEEECC
T ss_pred EEEEEEecCC-cHHHHHHHHHHHHHHHCcCeEEEEEeC
Confidence 3555544322 223667888888899999999998776
No 11
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=94.78 E-value=0.041 Score=46.70 Aligned_cols=44 Identities=9% Similarity=0.127 Sum_probs=29.5
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhH
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~ 115 (190)
+|++..+.+ ...++++.+..++++|+++|+-+.+++ +..+..|+
T Consensus 31 ~l~~~~~~~---~~~~~~~~~~f~~~~p~i~V~~~~~~~--~~~~~~kl 74 (414)
T 3quf_A 31 KISFYSYFK---DNQIGEVVKGFEKKNPDITLDVQYGQD--PAQYISTL 74 (414)
T ss_dssp EEEEEESSC---HHHHHHHHHHHHHHCTTEEEEEEECSS--HHHHHHHH
T ss_pred EEEEEecCC---chHHHHHHHHHHHHCcCeEEEEEeCCC--hHHHHHHH
Confidence 455544432 457888888889999999999877643 33444443
No 12
>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23
Probab=94.74 E-value=0.031 Score=43.89 Aligned_cols=38 Identities=13% Similarity=0.463 Sum_probs=29.0
Q ss_pred EEEEeccCcCcchhHHHHHHHHHh----hCCCeEEecccCCCCh
Q 029622 68 VNINFCASCSYRGTAITMKRMLET----QFPGIDVVLANYPPPL 107 (190)
Q Consensus 68 V~i~YC~SCGY~~~f~e~k~~L~~----~yP~i~V~G~nYpPp~ 107 (190)
-.++.| .|. -+.|-|++.+|++ .||+++|.-....+|-
T Consensus 23 A~LEvC-~CK-L~~yPeVk~FI~~d~~~~fpnL~vkyv~Ga~P~ 64 (126)
T 2a4h_A 23 AILEVC-TCK-FRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPV 64 (126)
T ss_dssp BEEECC-SCT-TTTCTTHHHHHHHTTGGGCTTBCCCCCSSCCCE
T ss_pred eEEEEc-chh-hhcCHHHHHHHccchhhhCCceEEEEecCCCCE
Confidence 366779 887 7788899999986 4999988776666664
No 13
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=90.11 E-value=0.31 Score=40.27 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCCceEEEEeccCcCcch---hHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhH
Q 029622 63 GYGSTVNINFCASCSYRG---TAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115 (190)
Q Consensus 63 ~~G~tV~i~YC~SCGY~~---~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~ 115 (190)
..+.+|+|..+. ++.. .++++.+..++++ +++|+-+.++- ...+..|+
T Consensus 20 ~~~~~L~v~~~~--~~~~~~~~~~~~~~~Fe~~~-gi~V~~~~~~~--~~~~~~kl 70 (330)
T 2qry_A 20 HMKPVLTVYTYD--SFAADWGPGPVVKKAFEADC-NCELKLVALED--GVSLLNRL 70 (330)
T ss_dssp --CCEEEEEECH--HHHSTTSSHHHHHHHHHTTS-CSEEEEEECSC--HHHHHHHH
T ss_pred cCCCeEEEEecc--ccccchhhhHHHHHHHHHHH-CCEEEEEeCCC--HHHHHHHH
Confidence 345677776553 3433 3578888888888 99998776641 33444443
No 14
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=89.71 E-value=0.27 Score=42.67 Aligned_cols=48 Identities=8% Similarity=0.155 Sum_probs=29.4
Q ss_pred CceEEEEeccCc---CcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhH
Q 029622 65 GSTVNINFCASC---SYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115 (190)
Q Consensus 65 G~tV~i~YC~SC---GY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~ 115 (190)
+.+|+|.||..- ..+..++++.+.-++++|+|+|+-+..+ +..+..|+
T Consensus 60 ~~~vtit~w~~~~~~~~~~~~~~~i~~F~~~~p~I~V~~~~~~---~~~~~~kl 110 (456)
T 4g68_A 60 SKKITLTFWNLFTGEPAKTKVKEIIDQWNKENPNVQIVESVTE---NDAYKTKI 110 (456)
T ss_dssp ---CEEEEEECCCSTTHHHHHHHHHHHHHHHCTTSEEEEEECC---HHHHHHHH
T ss_pred CCCEEEEEeeCCCCchHHHHHHHHHHHHHHHCcCeEEEEEECC---cHHHHHHH
Confidence 346677776432 2344577787788899999999876544 44444443
No 15
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=88.40 E-value=0.31 Score=40.97 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=25.8
Q ss_pred CceEEEEec---cCcCcchhHHHHHHHHHhhCCCeE---EecccC
Q 029622 65 GSTVNINFC---ASCSYRGTAITMKRMLETQFPGID---VVLANY 103 (190)
Q Consensus 65 G~tV~i~YC---~SCGY~~~f~e~k~~L~~~yP~i~---V~G~nY 103 (190)
+..+.|.|. .-||..+.|+++++.+...-+++. |.-+.|
T Consensus 33 ~~~vlV~Fy~~ApWCgl~P~~e~lA~~~~~~~~~v~~akVD~d~~ 77 (248)
T 2c0g_A 33 FPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDY 77 (248)
T ss_dssp SSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSS
T ss_pred CCCEEEEEECCCCCCccHHHHHHHHHHHhccCCCeEEEEEECCcc
Confidence 334555544 889999999999988765346654 444444
No 16
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=87.40 E-value=0.75 Score=39.11 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=29.3
Q ss_pred ceEEEEecc-CcCcchhHHHHHHHHHhhCCCeEEecccCCCChH
Q 029622 66 STVNINFCA-SCSYRGTAITMKRMLETQFPGIDVVLANYPPPLP 108 (190)
Q Consensus 66 ~tV~i~YC~-SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~ 108 (190)
.+++|.++. +-.....++++.+..++++ +++|+-+.++-.-+
T Consensus 39 ~~~tl~~w~~~~~~~~~~~~~~~~f~~~~-gi~V~~~~~~~~~~ 81 (420)
T 4hw8_A 39 KPNQLTMWVDGDKQMAFYKKITDQYTKKT-GIKVKLVNIGQNDQ 81 (420)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHHHHHHHH-CCEEEEEECCTTTH
T ss_pred CCeEEEEecCCCcchHHHHHHHHHHHHHh-CCEEEEEecCchhH
Confidence 344444553 3335677888888889999 99999888875443
No 17
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=86.94 E-value=0.34 Score=42.72 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
...||++-.. +=.....++++.+..+ +.|+++|+-+.++
T Consensus 18 ~~~tlt~w~~-~~~~~~~~~~~i~~F~-~~pgi~V~~~~~~ 56 (477)
T 2vgq_A 18 EEGKLVIWIN-GDKGYNGLAEVGKKFE-KDTGIKVTVEHPD 56 (477)
T ss_dssp CTTSEEEECC-TTSCHHHHHHHHHHHH-HHHSCCEEEECCT
T ss_pred CCcEEEEEeC-CCcchHHHHHHHHHHH-hCcCCeEEEEecC
Confidence 3446665433 1123355666666666 7899988877664
No 18
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=85.64 E-value=0.65 Score=40.87 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=27.0
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEec
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVL 100 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G 100 (190)
.+|+|.... +++..++++.+..++++|+++|+-
T Consensus 43 ~~L~V~~a~--sl~~~~~~l~~~Fe~~~pgv~V~~ 75 (354)
T 3k6v_A 43 EVLTVFHAG--SLSVPFEELEAEFEAQHPGVDVQR 75 (354)
T ss_dssp CEEEEEEEG--GGHHHHHHHHHHHHHHSTTCEEEE
T ss_pred CcEEEEEec--chHHHHHHHHHHHHHHCCCcEEEE
Confidence 467776554 579999999999999999998765
No 19
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004 orthologous group, structural genomics consortium, SGC, unknown function; NMR {Thermoplasma acidophilum}
Probab=84.89 E-value=0.68 Score=35.85 Aligned_cols=44 Identities=5% Similarity=-0.056 Sum_probs=30.5
Q ss_pred cccCCCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 60 GGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 60 ~~~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
.+...|..| =+|=.--||++..+.+.+.|++.||.+..+|..|-
T Consensus 15 ~~~~~~~~M-qeY~~KRG~k~~lerI~~~l~e~Fg~~~~~g~~~~ 58 (118)
T 2joi_A 15 ENLYFQGHM-REYPVKKGFPTDYDSIKRKISELGFDVKSEGDLII 58 (118)
T ss_dssp --------C-EEECCCSSSCCSHHHHHHHHHHHTCEEEEETTEEE
T ss_pred chhhhhhhh-hccccccCCCCcHHHHHHHHHHHcCCceecCCEEE
Confidence 344555544 36788889999999999999999999877777653
No 20
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=84.54 E-value=0.64 Score=38.58 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=22.6
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
+.+|+|..+.+ +. .+++.+..++++ +++|+-+.++
T Consensus 24 ~~~l~v~~w~~--~~--~~~~~~~Fe~~~-gi~V~~~~~~ 58 (343)
T 2v84_A 24 QDVLYLYNWTY--YT--PTSLIKKFEQQY-NVQVVYDDYA 58 (343)
T ss_dssp -CEEEEEEETT--TS--CHHHHHHHHHHH-TCEEEEEEES
T ss_pred CCeEEEEeccc--cc--CHHHHHHHHHHH-CCEEEEEeCC
Confidence 45788877753 32 256666667776 9988876653
No 21
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=84.14 E-value=3.3 Score=30.96 Aligned_cols=44 Identities=5% Similarity=-0.261 Sum_probs=30.5
Q ss_pred EEEeccCcCcchhHHHHHHHHHhhCCCe--EEecccCCCChHHHHHH
Q 029622 69 NINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLA 113 (190)
Q Consensus 69 ~i~YC~SCGY~~~f~e~k~~L~~~yP~i--~V~G~nYpPp~~k~~La 113 (190)
.|.|..+-...+..+.+-+++++. |++ .|.|..-.....++.+.
T Consensus 25 ~i~~~G~~~~~Kg~~~li~a~~~l-~~~~l~i~G~~~~~~~l~~~~~ 70 (177)
T 2f9f_A 25 FWLSVNRIYPEKRIELQLEVFKKL-QDEKLYIVGWFSKGDHAERYAR 70 (177)
T ss_dssp CEEEECCSSGGGTHHHHHHHHHHC-TTSCEEEEBCCCTTSTHHHHHH
T ss_pred EEEEEeccccccCHHHHHHHHHhC-CCcEEEEEecCccHHHHHHHHH
Confidence 467888888888899998888765 775 46776544445555544
No 22
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=82.80 E-value=4.1 Score=29.94 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=17.9
Q ss_pred eEEEEeccCcCcchhH---HHHHHHHHhh
Q 029622 67 TVNINFCASCSYRGTA---ITMKRMLETQ 92 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f---~e~k~~L~~~ 92 (190)
..+|..|++-|+-... +.+++.+++.
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~ 49 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSH 49 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHc
Confidence 4688889998887655 4555555543
No 23
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=81.19 E-value=2.8 Score=39.86 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHhhCC------Ce-----EEecccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhhhhh
Q 029622 79 RGTAITMKRMLETQFP------GI-----DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYS 147 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP------~i-----~V~G~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w~~~ 147 (190)
-...+|+..+++.--+ ++ +.||-.=|=.-.++++++... .=+.-|+++|-..-+ |-+|++.
T Consensus 42 i~~~dEv~EA~~~~s~~~~~~lGcdE~MwD~EGK~td~~~~~kl~s~~~~-------~~~~lG~d~flT~Rv-PNp~~E~ 113 (560)
T 3odm_A 42 ISIQQEPAEAIKGLTPQDKGGLGIEEVMIDFEGKLTPYHQTSQIALGLIS-------NGIIPGKDVRVTPRI-PNANKES 113 (560)
T ss_dssp CCTTTHHHHHHHHTSCGGGTSCCCCEEEEECSSBCCCTTHHHHHHHHHHT-------TTCCBTTTBEEEEEC-CCTTTSC
T ss_pred CCccccHHHHHHHhhhccccCCCCceeeecCCCCcCcHHHHHHHHHhhhh-------cCCCCCCceEEecCC-CChhhhh
Confidence 4567888888877767 43 579998888999999999886 224559999988777 4446555
Q ss_pred hhcCchhHHHHHHHHHHHHHHhh
Q 029622 148 LRANRFGSIASTWLIGNFLQSFL 170 (190)
Q Consensus 148 ~~~NK~~~~~~~fflgN~ie~~L 170 (190)
. +.|+.+ |+.....|.....+
T Consensus 114 ~-er~~l~-lesi~~a~d~a~~y 134 (560)
T 3odm_A 114 V-FRQLMS-IMSIIETNVQSKEL 134 (560)
T ss_dssp H-HHHHHH-HHHHHHHHHHHHHH
T ss_pred H-HHHHHH-HHHHHHHHHHHHHh
Confidence 4 356666 55556666655433
No 24
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=80.95 E-value=0.91 Score=32.14 Aligned_cols=39 Identities=8% Similarity=-0.016 Sum_probs=25.6
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCC--eEEecccCC
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPG--IDVVLANYP 104 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~--i~V~G~nYp 104 (190)
+.+...|-..|++=+.+...-+.+.++|++ +.+..-|..
T Consensus 35 ~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d 75 (121)
T 2j23_A 35 VVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75 (121)
T ss_dssp CEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETT
T ss_pred EEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECc
Confidence 456666666788777776666667778877 665554443
No 25
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=79.50 E-value=0.95 Score=34.59 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=23.3
Q ss_pred CCCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEeccc
Q 029622 63 GYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLAN 102 (190)
Q Consensus 63 ~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~n 102 (190)
+...+++|-...+.. .....++-+.++++||+++++-..
T Consensus 24 ~~~g~l~Ig~~~~~~-~~~l~~~l~~f~~~~P~i~l~i~~ 62 (238)
T 3onm_A 24 NMEGSLIIGASDDTA-DTLLPFLLNRVATLYPRLAIDVRV 62 (238)
T ss_dssp ---CCEEEEECHHHH-TTHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCceeEEEeccchhh-HHHHHHHHHHHHHHCCCcEEEEEE
Confidence 444577776554442 344556666778899998765443
No 26
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=78.41 E-value=0.57 Score=33.15 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=22.5
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
.|...|=..|++=+.+...-+.+.++|+++.+..-|..
T Consensus 33 vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~ 70 (114)
T 2oe3_A 33 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVD 70 (114)
T ss_dssp EEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETT
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 44444444477655555555556778998776655543
No 27
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=77.98 E-value=3.7 Score=38.72 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=25.7
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccC
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANY 103 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nY 103 (190)
.+.+|++-. .+=.....++++.+..+++ |+++|+-..+
T Consensus 39 ~~~tLtvw~-~~~~~~~~~~~li~~Fek~-pgIkV~~~~~ 76 (653)
T 3osr_A 39 EEGKLVIWI-NGDKGYNGLAEVGKKFEKD-TGIKVTVEHP 76 (653)
T ss_dssp CTTEEEEEC-CTTSCHHHHHHHHHHHHHH-HSCEEEEECC
T ss_pred CCCEEEEEe-cCCchHHHHHHHHHHHHhh-hCCEEEEEEC
Confidence 345666643 3333456778888888888 9999987764
No 28
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=77.50 E-value=1.4 Score=36.15 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=23.4
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEec
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVL 100 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G 100 (190)
...+|+|.-. =+++..++++.+..++++ +++|+-
T Consensus 21 aa~~L~V~~a--~s~~~~~~~l~~~Fe~~~-gi~V~~ 54 (253)
T 3gzg_A 21 MTAPVTVFAA--ASLKESMDEAATAYEKAT-GTPVRV 54 (253)
T ss_dssp -CCCEEEEEE--GGGHHHHHHHHHHHHHHH-SCCEEE
T ss_pred cCCCEEEEEe--cChHHHHHHHHHHHHHHh-CCeEEE
Confidence 3456666543 346888899988888888 877664
No 29
>3rlk_A A1 protein; beta-barrel, polyproline helix, structural protein; HET: PG4; 1.76A {Enterobacteria phage qbeta} PDB: 3rlc_A*
Probab=77.38 E-value=1.1 Score=36.67 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=4.5
Q ss_pred CCCCCCCCCCCCCCCC
Q 029622 35 ASHHHHKPPIPSENLT 50 (190)
Q Consensus 35 ~~~~~~~~~~~~~~~~ 50 (190)
||||||+.|+|..+.|
T Consensus 2 ~~~~~~~~~~~~~~~P 17 (192)
T 3rlk_A 2 HHHHHHSKPDPVIPDP 17 (192)
T ss_dssp --------CCCCCCCC
T ss_pred CccccCCCCCCccCCC
Confidence 6667777777754433
No 30
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=75.21 E-value=7.2 Score=29.28 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=21.2
Q ss_pred CceEEEEe-ccCcCcchhHHHHHHHHHhhCCC--eEEecccCC
Q 029622 65 GSTVNINF-CASCSYRGTAITMKRMLETQFPG--IDVVLANYP 104 (190)
Q Consensus 65 G~tV~i~Y-C~SCGY~~~f~e~k~~L~~~yP~--i~V~G~nYp 104 (190)
|..+.|.| .+.|+.=..-...-+.+.++|.+ ++|.|-+..
T Consensus 38 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d 80 (180)
T 3kij_A 38 GKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCN 80 (180)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECC
T ss_pred CCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 44444444 34466444433333345666754 788877644
No 31
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=74.72 E-value=2 Score=36.45 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=29.3
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHh
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVV 116 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l 116 (190)
+++|.++..-+....++++.+..++++ +++|+-+.++ +..+..|+.
T Consensus 34 ~~~l~~w~~~~~~~~~~~~~~~F~~~~-~i~V~~~~~~---~~~~~~kl~ 79 (416)
T 2xd3_A 34 VKELTVYVDEGYKSYIEEVAKAYEKEA-GVKVTLKTGD---ALGGLDKLS 79 (416)
T ss_dssp --CCEEEECGGGHHHHHHHHHHHHHHS-SCCCEEEECC---HHHHHHTHH
T ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHH-CCEEEEEeCC---hHHHHHHHH
Confidence 344444444456677888888889999 9998877663 344444443
No 32
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=73.09 E-value=3.1 Score=33.39 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=19.5
Q ss_pred cchhHHHHHHHHHhhC--CCeEEecccCC
Q 029622 78 YRGTAITMKRMLETQF--PGIDVVLANYP 104 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~y--P~i~V~G~nYp 104 (190)
+.+-+.++.+.+.++. |+++|+-..++
T Consensus 77 ~~G~~~dl~~~i~~~~~~~g~~v~~~~~~ 105 (291)
T 2yjp_A 77 NQGFDVEIAKDLAKDLLGSPDKVEFVLTE 105 (291)
T ss_dssp EESHHHHHHHHHHHHHHSCGGGEEEEECC
T ss_pred EeehHHHHHHHHHHHhccCCceEEEEEcc
Confidence 3466778888887776 78887776665
No 33
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=72.94 E-value=2.5 Score=35.60 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=29.4
Q ss_pred CCCceEEEEeccCcC-cchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 63 GYGSTVNINFCASCS-YRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 63 ~~G~tV~i~YC~SCG-Y~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
+.+.+|+|....+=. ....++++.+..++++| ++|+-+.++
T Consensus 25 ~~~~~lti~~~~~~~~~~~~~~~~~~~f~~~~~-i~V~~~~~~ 66 (415)
T 3oo8_A 25 DGNGPITFGSNYSDEAPKAAFASLMQQATTSTT-VPVTVNTTD 66 (415)
T ss_dssp -CCCCEEEEECCCSHHHHHHHHHHHHHHHHHHC-CCEEEEECC
T ss_pred CCCceEEEEeecCCcchhHHHHHHHHHHHHhCC-eeEEEEecC
Confidence 345577777654332 34678889999999999 998887765
No 34
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=72.28 E-value=2.4 Score=36.07 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=17.9
Q ss_pred chhHHHHHHHHHhhCCCeEEecccCCCC
Q 029622 79 RGTAITMKRMLETQFPGIDVVLANYPPP 106 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP~i~V~G~nYpPp 106 (190)
...++++.+..++++|+++|+-+..+-.
T Consensus 56 ~~~~~~~~~~f~~~~p~i~V~~~~~~~~ 83 (430)
T 2w7y_A 56 AKTMRDLYDKFAEEHKDSGVEFKPTPVN 83 (430)
T ss_dssp HHHHHHHHHHHHHHC--CCSEEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCceEEEEeCCCC
Confidence 3557777778889999987766555433
No 35
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=70.43 E-value=3.3 Score=36.81 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=10.4
Q ss_pred hCCCeEEecccCC
Q 029622 92 QFPGIDVVLANYP 104 (190)
Q Consensus 92 ~yP~i~V~G~nYp 104 (190)
.+|+++|+-.|+.
T Consensus 54 qd~gikIefsnF~ 66 (379)
T 3uau_A 54 QDSGIKIEFSDFK 66 (379)
T ss_dssp TTTSCEEECCCCE
T ss_pred hCCCceEEeecce
Confidence 4799999988764
No 36
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=69.15 E-value=2.7 Score=34.54 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=16.9
Q ss_pred ccCCCceEEEEeccCc------CcchhHHHHHHHHHhh
Q 029622 61 GIGYGSTVNINFCASC------SYRGTAITMKRMLETQ 92 (190)
Q Consensus 61 ~~~~G~tV~i~YC~SC------GY~~~f~e~k~~L~~~ 92 (190)
+...+..++|.+.... |......++.+.|.++
T Consensus 14 ~~~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~ 51 (406)
T 2gek_A 14 LVPRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA 51 (406)
T ss_dssp -------CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT
T ss_pred cccCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHC
Confidence 3345556778777642 3345667788888776
No 37
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=67.24 E-value=11 Score=29.54 Aligned_cols=40 Identities=3% Similarity=0.058 Sum_probs=28.7
Q ss_pred CCceEEEEeccCcCcc-hhHHHHHHHHHhhCCCeEEecccCC
Q 029622 64 YGSTVNINFCASCSYR-GTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~-~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
...+..+-|...||=+ +...|++++|++. |+..+.-++|.
T Consensus 54 Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~-~~~~~~~e~Fd 94 (133)
T 1ub1_A 54 SAGKYDVYLINPQGKAFRSKVELIAYFEKV-GDTSLDPNDFD 94 (133)
T ss_dssp SCCSEEEEEECTTSCEESSHHHHHHHHTTS-CCCSCCGGGCC
T ss_pred CCCceeEEEECCCCCeeeCHHHHHHHHHHC-CccCCCHhHCc
Confidence 3458999999999955 7889999999853 44334445543
No 38
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=66.98 E-value=5.3 Score=31.78 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=20.0
Q ss_pred ceEEEEe-ccCcCcchhHHH-HHH-HHHhhCCCeEEec
Q 029622 66 STVNINF-CASCSYRGTAIT-MKR-MLETQFPGIDVVL 100 (190)
Q Consensus 66 ~tV~i~Y-C~SCGY~~~f~e-~k~-~L~~~yP~i~V~G 100 (190)
.+++|+| |....-|...-| +-| .+++.-++++|..
T Consensus 33 ~~mkVLFVC~GNiCRSpmAE~l~r~~~~~~g~~~~v~S 70 (180)
T 4egs_A 33 GSMRVLFVCTGNTCRSPMAEGIFNAKSKALGKDWEAKS 70 (180)
T ss_dssp -CCEEEEEESSSSSHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEE
Confidence 3566665 877776776544 333 3444446777644
No 39
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=66.72 E-value=4.9 Score=33.70 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=20.0
Q ss_pred CCceEEEEec-cCcCcchhHHHHHHHHHhhCCC-eEEecccCC
Q 029622 64 YGSTVNINFC-ASCSYRGTAITMKRMLETQFPG-IDVVLANYP 104 (190)
Q Consensus 64 ~G~tV~i~YC-~SCGY~~~f~e~k~~L~~~yP~-i~V~G~nYp 104 (190)
.+..+.|.|+ .-|+.=+.+...-..+.++|++ +.+..-+-.
T Consensus 34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d 76 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCD 76 (298)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEcc
Confidence 3444445443 3355544444444445556665 555554444
No 40
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=66.53 E-value=14 Score=28.29 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=28.9
Q ss_pred cchhHHHHHHHHHhhCCCeEEec--ccC-CCChHHHHHHhH
Q 029622 78 YRGTAITMKRMLETQFPGIDVVL--ANY-PPPLPKRLLAKV 115 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V~G--~nY-pPp~~k~~Lak~ 115 (190)
....++++++.|+++.|+..|+- -.| -.|.....+.++
T Consensus 39 ~~~~~~~la~~l~~~~~~~~V~~afle~~~~Psl~~~l~~l 79 (156)
T 1tjn_A 39 YREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM 79 (156)
T ss_dssp HHHHHHHHHHHHHHHTSSSEEEEEECSSSCSSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEecCCCCCCHHHHHHHc
Confidence 45679999999999998876643 455 667778888777
No 41
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=64.67 E-value=1.4 Score=39.32 Aligned_cols=7 Identities=14% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 029622 48 NLTPDFP 54 (190)
Q Consensus 48 ~~~~~~~ 54 (190)
-+++||-
T Consensus 15 ~~~~~~~ 21 (357)
T 4g1u_A 15 GENLYFQ 21 (357)
T ss_dssp -------
T ss_pred CCchHHH
Confidence 3666654
No 42
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=64.60 E-value=3.9 Score=34.36 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=12.9
Q ss_pred eEEEEeccCcCcchh---HHHHHHHHHhh
Q 029622 67 TVNINFCASCSYRGT---AITMKRMLETQ 92 (190)
Q Consensus 67 tV~i~YC~SCGY~~~---f~e~k~~L~~~ 92 (190)
.|+|.+.+.- +.+. +..+.+.|+++
T Consensus 20 ~MrIl~~~~~-~~Ghv~~~~~La~~L~~~ 47 (398)
T 3oti_A 20 HMRVLFVSSP-GIGHLFPLIQLAWGFRTA 47 (398)
T ss_dssp CCEEEEECCS-SHHHHGGGHHHHHHHHHT
T ss_pred cCEEEEEcCC-CcchHhHHHHHHHHHHHC
Confidence 3566665432 2222 35666666665
No 43
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri}
Probab=62.98 E-value=8.2 Score=31.53 Aligned_cols=34 Identities=3% Similarity=-0.057 Sum_probs=22.3
Q ss_pred eEEEEeccCcCcc---hhHHHHHHHHHhhCCCeEEecc
Q 029622 67 TVNINFCASCSYR---GTAITMKRMLETQFPGIDVVLA 101 (190)
Q Consensus 67 tV~i~YC~SCGY~---~~f~e~k~~L~~~yP~i~V~G~ 101 (190)
.|.|.+=. -++. ...+++++.|++.|.++.|+-.
T Consensus 22 ~I~I~pi~-g~~~~~~~~l~~l~~~l~~~f~~l~V~~~ 58 (195)
T 2x7m_A 22 KLCLVAFD-GRIPMLSSIVDRFEEHVSEYLGEVKVKKK 58 (195)
T ss_dssp EEEEEESS-SCCTTHHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred EEEEEEeC-CCCCcHHHHHHHHHHHHHHHhCCceEEEe
Confidence 35555441 2344 4678999999999997766553
No 44
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=62.05 E-value=22 Score=28.41 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=27.0
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCeE-EecccCCCChHHHHHHhHh
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGID-VVLANYPPPLPKRLLAKVV 116 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~-V~G~nYpPp~~k~~Lak~l 116 (190)
|.+|.+.+.. -+...+++++.+++.-+++. +.++--.+...++++.++.
T Consensus 50 G~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 99 (272)
T 4e3z_A 50 GWRVGVNYAA---NREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVD 99 (272)
T ss_dssp TCEEEEEESS---CHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEcCC---ChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4555444332 24556677777777656654 4454444555556655554
No 45
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=61.15 E-value=9.3 Score=35.99 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=24.6
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccC
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANY 103 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nY 103 (190)
.+.+|++-. .+-.....++++.+..+++ |+++|+-..+
T Consensus 39 ~~~tLtvw~-~~~~~~~~~~~~i~~Fek~-~gIkV~~~~~ 76 (661)
T 3osq_A 39 EEGKLVIWI-NGDKGYNGLAEVGKKFEKD-TGIKVTVEHP 76 (661)
T ss_dssp CTTSEEEEC-CTTSCHHHHHHHHHHHHHH-HCCCEEEECC
T ss_pred CCCEEEEEe-CCCcchHHHHHHHHHHHhh-hCcEEEEEeC
Confidence 345666653 2222345677777777888 8999887764
No 46
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=61.11 E-value=9.2 Score=33.93 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=44.8
Q ss_pred ccCCCceEEEEeccCcC---cchhHHHHHHHHHhhCCCeEEe-cc------cCCCChHHHHHHhHhhHH---HHHHHhHh
Q 029622 61 GIGYGSTVNINFCASCS---YRGTAITMKRMLETQFPGIDVV-LA------NYPPPLPKRLLAKVVPAV---QIGVIGIV 127 (190)
Q Consensus 61 ~~~~G~tV~i~YC~SCG---Y~~~f~e~k~~L~~~yP~i~V~-G~------nYpPp~~k~~Lak~l~~~---q~~lI~li 127 (190)
....|.+|-|-=|+|.. .+..++.-.+.|++ =|++|+ |. .|--..-+.=++-+-.++ .+=+|.++
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~--~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~ 116 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQR--KGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMST 116 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHH--TTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEES
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHh--CCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 35678999999888764 35678887888886 466653 32 233334444455555444 23456666
Q ss_pred hcCCcccccc
Q 029622 128 VAGEQIFPML 137 (190)
Q Consensus 128 v~G~~iF~~L 137 (190)
.-|+.--+.|
T Consensus 117 rGGyga~rlL 126 (371)
T 3tla_A 117 IGGDNSNSLL 126 (371)
T ss_dssp CCCSCGGGGG
T ss_pred cccccHHHHH
Confidence 6677544443
No 47
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=60.21 E-value=17 Score=28.99 Aligned_cols=37 Identities=8% Similarity=0.184 Sum_probs=20.0
Q ss_pred eEEEEe----ccCcCcchhHHHHHHHHHhhC--CCeEEecccCCCC
Q 029622 67 TVNINF----CASCSYRGTAITMKRMLETQF--PGIDVVLANYPPP 106 (190)
Q Consensus 67 tV~i~Y----C~SCGY~~~f~e~k~~L~~~y--P~i~V~G~nYpPp 106 (190)
+|...+ |..| +....++++ +.++| .+++|.|-+...+
T Consensus 59 vvl~F~patwCp~C--~~e~p~l~~-l~~~~~~~~v~vv~Is~D~~ 101 (221)
T 2c0d_A 59 CCLLFYPLNYTFVC--PTEIIEFNK-HIKDFENKNVELLGISVDSV 101 (221)
T ss_dssp EEEEECCCCTTTCC--HHHHHHHHH-THHHHHHTTEEEEEEESSCH
T ss_pred EEEEEEcCCCCCch--HHHHHHHHH-HHHHHHHCCCEEEEEeCCCH
Confidence 444445 4445 444444443 33344 5788888777543
No 48
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=60.20 E-value=5.5 Score=30.86 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=19.6
Q ss_pred eEEEEe----ccCcCc-c-hhHHHHHHHHHhhCCCeEEec
Q 029622 67 TVNINF----CASCSY-R-GTAITMKRMLETQFPGIDVVL 100 (190)
Q Consensus 67 tV~i~Y----C~SCGY-~-~~f~e~k~~L~~~yP~i~V~G 100 (190)
.|.+.| |..|.. . ..|+++.+.++++ +++|.|
T Consensus 46 vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~--gv~vv~ 83 (173)
T 3mng_A 46 GVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK--GVQVVA 83 (173)
T ss_dssp EEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT--TCCEEE
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEE
Confidence 556666 777862 3 5666665555543 677776
No 49
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2
Probab=59.64 E-value=6.3 Score=32.28 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHhhCCCeEEec-----ccCCCCh
Q 029622 78 YRGTAITMKRMLETQFPGIDVVL-----ANYPPPL 107 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V~G-----~nYpPp~ 107 (190)
.+..-+.+..-|+++.|+++|+. +||.+.-
T Consensus 27 t~~Ii~aiv~rL~~~LP~~~Ve~fP~~p~~Y~l~h 61 (175)
T 2gjv_A 27 TLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTG 61 (175)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEECCSSCTTTCCCCS
T ss_pred HHHHHHHHHHHHHhHCCCceEEeCCCCHHHcCccC
Confidence 56667888889999999999865 5666543
No 50
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=59.41 E-value=1.8 Score=32.41 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=29.4
Q ss_pred CCCCCCCCc-------cccccCCCceEEEEeccCcCcchhH--------HHHH-HHHHhhCCCe--EEeccc
Q 029622 49 LTPDFPSQK-------IVGGIGYGSTVNINFCASCSYRGTA--------ITMK-RMLETQFPGI--DVVLAN 102 (190)
Q Consensus 49 ~~~~~~~~~-------~~~~~~~G~tV~i~YC~SCGY~~~f--------~e~k-~~L~~~yP~i--~V~G~n 102 (190)
+|-.||... +.|..-...|++|-...--.-|.+. .+|+ ++|..+-|-+ +|+|+.
T Consensus 20 spekfpgrsstnhsi~vsg~~rfagtikitt~~vidnranlnyllshs~ldy~~nil~drnpvvtedvegdk 91 (113)
T 2hdi_B 20 SPEKFPGRSSTNHSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDK 91 (113)
T ss_dssp CTTTSCEEEEEEEEEEECSCTTTCEEEEEEEEEEECSHHHHHHHHHSCHHHHHHHTSCCCCSCCSSCHHHHH
T ss_pred CcccCCCCCCCCceEEEcCCCceeeEEEEeechhcccccchhhhhhccchhhhhhhhcCCCCeeecccccch
Confidence 566777554 4455566778887654433333332 2333 4455666665 366653
No 51
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=58.65 E-value=11 Score=29.40 Aligned_cols=53 Identities=9% Similarity=0.256 Sum_probs=33.7
Q ss_pred CCc-eEEEEeccCcCcchh-HHHHHHHHHhhCC-CeEEecccCCCC--hHHHHHHhHh
Q 029622 64 YGS-TVNINFCASCSYRGT-AITMKRMLETQFP-GIDVVLANYPPP--LPKRLLAKVV 116 (190)
Q Consensus 64 ~G~-tV~i~YC~SCGY~~~-f~e~k~~L~~~yP-~i~V~G~nYpPp--~~k~~Lak~l 116 (190)
-++ ||.+..-..|.|=+. +.++++.|++.|| +++++=.++|.+ +.-..+|++.
T Consensus 13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~p~~~h~~s~~aaraa 70 (182)
T 3gn3_A 13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPWHMFSGVIVRCI 70 (182)
T ss_dssp CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEECCCTTSTTHHHHHHHH
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEcCCCCCccHHHHHHHH
Confidence 344 555555666666555 4677788887778 589999899864 3334444444
No 52
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=58.52 E-value=13 Score=27.52 Aligned_cols=36 Identities=11% Similarity=0.325 Sum_probs=17.2
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhCC--CeEEecccC
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQFP--GIDVVLANY 103 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP--~i~V~G~nY 103 (190)
+|...+-+.|+.=....++++ +.++|. +++|.+-+.
T Consensus 35 vll~F~a~wC~~C~~~~~l~~-l~~~~~~~~v~vv~vs~ 72 (171)
T 3cmi_A 35 VLIVNVASKCGFTPQYKELEA-LYKRYKDEGFTIIGFPC 72 (171)
T ss_dssp EEEEEEESSSCCHHHHHHHHH-HHHHHGGGTEEEEEEEE
T ss_pred EEEEEEecCCCcchhHHHHHH-HHHHhccCCeEEEEEEC
Confidence 343334344543333334433 444454 477777654
No 53
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1 PDB: 2q16_A* 2pyu_A*
Probab=58.49 E-value=14 Score=30.97 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=34.0
Q ss_pred EEEeccCcCcchhHHHHHHHHHhhCCCeEEeccc-CCC--------ChHHHHHHhHhhHHHHH
Q 029622 69 NINFCASCSYRGTAITMKRMLETQFPGIDVVLAN-YPP--------PLPKRLLAKVVPAVQIG 122 (190)
Q Consensus 69 ~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~n-YpP--------p~~k~~Lak~l~~~q~~ 122 (190)
+|.+.++. ++...|++++|... +++|.... ++. +.--..+-|+-.+.+..
T Consensus 25 ~iv~AT~N--~~Kl~E~~~iL~~~--~iev~~~~d~~~~ei~E~g~Tf~eNA~~KA~~aa~~~ 83 (221)
T 1k7k_A 25 KVVLATGN--VGKVRELASLLSDF--GLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVT 83 (221)
T ss_dssp EEEESCCC--HHHHHHHHHHHGGG--TEEEEETTTTTCCCCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCC--HHHHHHHHHHhhhc--CeEEEEhhhcCCCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 68888887 99999999999764 57665542 322 23445666766666654
No 54
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=58.34 E-value=17 Score=26.79 Aligned_cols=25 Identities=8% Similarity=0.020 Sum_probs=16.2
Q ss_pred CCceEEEEeccCcCcchhHHHHHHH
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRM 88 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~ 88 (190)
.|.++.|.--.+.-.++.++.|.+.
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek 63 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKR 63 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 4666666666666667776666554
No 55
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=57.84 E-value=10 Score=31.52 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=40.8
Q ss_pred CCCCCCCCc-----cccccCCCceEEEEeccC--cCcchhHHHHHHHHHhh-CCCeEEecccCCCChHHHHHHhHhhH
Q 029622 49 LTPDFPSQK-----IVGGIGYGSTVNINFCAS--CSYRGTAITMKRMLETQ-FPGIDVVLANYPPPLPKRLLAKVVPA 118 (190)
Q Consensus 49 ~~~~~~~~~-----~~~~~~~G~tV~i~YC~S--CGY~~~f~e~k~~L~~~-yP~i~V~G~nYpPp~~k~~Lak~l~~ 118 (190)
.|+.|-..- ...|++-+.+|-+.++.. =+.+++++++++.+... ..++++.-- ++.-+...+.++...
T Consensus 13 ~tlGFd~~~~vral~~~g~~~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~~~i~~e~~~v--d~~df~~~v~~i~~~ 88 (244)
T 2wte_A 13 VTMGFNETFLLRLLNETSAQKEDSLVIVVPSPIVSGTRAAIESLRAQISRLNYPPPRIYEI--EITDFNLALSKILDI 88 (244)
T ss_dssp ECCCSCCHHHHHHHHHTTCCTTSEEEEEEESSCCHHHHHHHHHHHHHHHHHTCCCEEEEEE--CCCSHHHHHHHHHHH
T ss_pred eccCcChHHHHHHHHHhCCCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHcCCCceEEEEE--CCccHHHHHHHHHHH
Confidence 667765443 334445667888888764 35788999999999877 223333222 233355555554443
No 56
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=57.60 E-value=12 Score=33.02 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=14.4
Q ss_pred CcchhHHHHHHHHHhhCCCe
Q 029622 77 SYRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 77 GY~~~f~e~k~~L~~~yP~i 96 (190)
.+.+.|++++..+++...++
T Consensus 27 df~~~~~~~~~~~~~~l~~~ 46 (368)
T 2q58_A 27 DFINYYDKFKVIVYNVLKKL 46 (368)
T ss_dssp TGGGTHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 46777888888877776544
No 57
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=57.27 E-value=3.6 Score=32.08 Aligned_cols=10 Identities=0% Similarity=-0.024 Sum_probs=4.9
Q ss_pred EEEeccCcCc
Q 029622 69 NINFCASCSY 78 (190)
Q Consensus 69 ~i~YC~SCGY 78 (190)
++..+...|+
T Consensus 77 ~~~l~DtpG~ 86 (228)
T 2qu8_A 77 KYQIIDTPGL 86 (228)
T ss_dssp EEEEEECTTT
T ss_pred eEEEEECCCC
Confidence 3444555554
No 58
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=56.99 E-value=8.7 Score=29.44 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=9.0
Q ss_pred HHHHHHHhhCCCeE
Q 029622 84 TMKRMLETQFPGID 97 (190)
Q Consensus 84 e~k~~L~~~yP~i~ 97 (190)
++.+.|.+.++++.
T Consensus 36 Tl~~~L~~~~~~~~ 49 (207)
T 2qt1_A 36 TLAKNLQKHLPNCS 49 (207)
T ss_dssp HHHHHHHTTSTTEE
T ss_pred HHHHHHHHhcCCcE
Confidence 35677777776654
No 59
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=56.89 E-value=10 Score=30.89 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=26.2
Q ss_pred CceEEEEeccCcCcchh-HHHHHHHHHhhCCCeEEecccCCC
Q 029622 65 GSTVNINFCASCSYRGT-AITMKRMLETQFPGIDVVLANYPP 105 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~-f~e~k~~L~~~yP~i~V~G~nYpP 105 (190)
..+|+|-|-..- -.. +.+-+.++++++++++|+-.+|+-
T Consensus 28 ~~~lrig~~~~~--~p~~~a~~~g~~~~~~~g~~v~~~~~~~ 67 (324)
T 3ksx_A 28 PAQLRIGYQKAV--SSLVLAKQHRLLEQRFPRTKITWVEFPA 67 (324)
T ss_dssp CSEEEEEEETTC--HHHHHHHHHTHHHHHCTTSEEEEEEESS
T ss_pred CCeEEEEecCCc--hhHHHHHhhCHHHHhcCCCceEEEECCC
Confidence 347888877642 222 234456788889999988887763
No 60
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=56.72 E-value=25 Score=28.94 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=30.8
Q ss_pred EEEEeccCcC--cchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHhh
Q 029622 68 VNINFCASCS--YRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVP 117 (190)
Q Consensus 68 V~i~YC~SCG--Y~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l~ 117 (190)
.+|.||.+-+ ....++++.+.-++++|+++|+-... +-+...+.+++.
T Consensus 6 TTItfW~~~~g~~~~~~~~~i~~F~~~~p~i~V~~~~~--~~~~~~~~~~~a 55 (419)
T 4aq4_A 6 TTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYK--GNYEQNLSAGIA 55 (419)
T ss_dssp EEEEEEECCCTHHHHHHHHHHHHHHHHCTTEEEEEEEC--SSHHHHHHHHHH
T ss_pred EEEEEcCCCCchHHHHHHHHHHHHHHHCcCeEEEEEeC--CCHHHHHHHHHH
Confidence 3667775432 44566677777788999999986643 235666665553
No 61
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=56.61 E-value=8.4 Score=32.00 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=18.2
Q ss_pred CCceEEEEeccCcCcchh---HHHHHHHHHhhCCCeEE
Q 029622 64 YGSTVNINFCASCSYRGT---AITMKRMLETQFPGIDV 98 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~---f~e~k~~L~~~yP~i~V 98 (190)
.+.+++|.+.+.- +.+. ...+.+.|.++=-++.+
T Consensus 17 ~~~~MrIl~~~~~-~~Gh~~~~~~la~~L~~~GheV~v 53 (412)
T 3otg_A 17 EGRHMRVLFASLG-THGHTYPLLPLATAARAAGHEVTF 53 (412)
T ss_dssp -CCSCEEEEECCS-SHHHHGGGHHHHHHHHHTTCEEEE
T ss_pred ccceeEEEEEcCC-CcccHHHHHHHHHHHHHCCCEEEE
Confidence 3445677766533 3333 24677777777444443
No 62
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=56.58 E-value=14 Score=27.95 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHhhC--CCeEEecccCCC
Q 029622 79 RGTAITMKRMLETQF--PGIDVVLANYPP 105 (190)
Q Consensus 79 ~~~f~e~k~~L~~~y--P~i~V~G~nYpP 105 (190)
+....++++.. ++| -+++|.+-+-..
T Consensus 68 ~~el~~l~~l~-~~~~~~~~~vv~Vs~D~ 95 (179)
T 3ixr_A 68 STEGLEFNLLL-PQFEQINATVLGVSRDS 95 (179)
T ss_dssp HHHHHHHHHHH-HHHHTTTEEEEEEESCC
T ss_pred HHHHHHHHHHH-HHHHHCCCEEEEEcCCC
Confidence 44455554433 333 257887766554
No 63
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=56.26 E-value=10 Score=29.02 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=21.2
Q ss_pred cchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHH
Q 029622 78 YRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~La 113 (190)
+++-..++.+.+.++- +++++-..+ +|.+.+.
T Consensus 45 ~~G~~~dl~~~i~~~~-g~~~~~~~~---~~~~~~~ 76 (249)
T 4f3p_A 45 YVGFDLDLWAEIAKGA-GWTYKIQPM---DFAGLIP 76 (249)
T ss_dssp EESHHHHHHHHHHHHH-TCCEEEEEE---CGGGHHH
T ss_pred EEEEhHHHHHHHHHHc-CCceEEEec---CHHHHHH
Confidence 4577788888887775 676666555 3555443
No 64
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=56.20 E-value=11 Score=26.82 Aligned_cols=37 Identities=8% Similarity=0.112 Sum_probs=20.6
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCC-CeEEeccc
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFP-GIDVVLAN 102 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP-~i~V~G~n 102 (190)
+.+...|-..|++=+.+...-+.+.++|+ ++.+..-|
T Consensus 42 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd 79 (128)
T 2o8v_B 42 AILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLN 79 (128)
T ss_dssp EEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEE
T ss_pred EEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEE
Confidence 34445554557765555555455666776 46554433
No 65
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=55.75 E-value=6.7 Score=30.63 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=11.1
Q ss_pred ccccCCCceEEEEeccCcCc-chhHHHHHHHHH
Q 029622 59 VGGIGYGSTVNINFCASCSY-RGTAITMKRMLE 90 (190)
Q Consensus 59 ~~~~~~G~tV~i~YC~SCGY-~~~f~e~k~~L~ 90 (190)
.|++-.|+..-..+-...|+ +....++...++
T Consensus 14 ~~tit~gnr~vt~v~~~~g~~e~elL~lAAs~E 46 (156)
T 1svj_A 14 SGHGGRHNRQASEFIPAQGVDEKTLADAAQLAS 46 (156)
T ss_dssp -------CEEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred CCceecCCCeEEEEEecCCCCHHHHHHHHHHHh
Confidence 37777887444444222343 334555555444
No 66
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=55.47 E-value=21 Score=30.01 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=10.9
Q ss_pred HHHHHHHHhhCCCeE
Q 029622 83 ITMKRMLETQFPGID 97 (190)
Q Consensus 83 ~e~k~~L~~~yP~i~ 97 (190)
.++.+.|.+..|+-+
T Consensus 37 ltv~~~i~~~~P~~~ 51 (290)
T 2vvt_A 37 LTVLKEALKQLPNER 51 (290)
T ss_dssp HHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHCCCcc
Confidence 467777778888764
No 67
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=54.16 E-value=6.8 Score=29.92 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=22.1
Q ss_pred eccCcC----cchhHHHHHHHHHhhCCCe
Q 029622 72 FCASCS----YRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 72 YC~SCG----Y~~~f~e~k~~L~~~yP~i 96 (190)
-|.||- -+.+|+=++.+|..|||+.
T Consensus 18 iCASCVnaPSSkeTyEWLqAal~RKyp~~ 46 (111)
T 1xg8_A 18 ICASCVNAPTSKDIYDWLQPLLKRKYPNI 46 (111)
T ss_dssp CCGGGSSSCCHHHHHHHHHHHHHHHCTTS
T ss_pred cchhccCCCCchhHHHHHHHHHhCcCCCC
Confidence 599994 6789999999999999994
No 68
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=54.13 E-value=9.9 Score=27.38 Aligned_cols=12 Identities=17% Similarity=0.681 Sum_probs=9.9
Q ss_pred EEEEeccCcCcc
Q 029622 68 VNINFCASCSYR 79 (190)
Q Consensus 68 V~i~YC~SCGY~ 79 (190)
+..-.|..|||.
T Consensus 25 m~~y~C~vCGyv 36 (81)
T 2kn9_A 25 YKLFRCIQCGFE 36 (81)
T ss_dssp CCEEEETTTCCE
T ss_pred cceEEeCCCCEE
Confidence 567899999975
No 69
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=53.95 E-value=14 Score=30.35 Aligned_cols=12 Identities=8% Similarity=0.332 Sum_probs=6.9
Q ss_pred CeEEecccCCCC
Q 029622 95 GIDVVLANYPPP 106 (190)
Q Consensus 95 ~i~V~G~nYpPp 106 (190)
+++|+-.+++-.
T Consensus 43 Gl~V~~~~~~~g 54 (321)
T 2x7q_A 43 DLSIEFVKVPEG 54 (321)
T ss_dssp TCCEEEEECTTC
T ss_pred CceEEEEECCCC
Confidence 566666565544
No 70
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae}
Probab=53.91 E-value=15 Score=30.52 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=24.9
Q ss_pred ccccccCCCceEEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622 57 KIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 57 ~~~~~~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i 96 (190)
|.+-++..|-++.|.--..- .++.++++..|+++...-
T Consensus 35 ~~~~~i~~~~~~~~~~~~~~--~etleeLKe~Irk~le~e 72 (218)
T 1zxj_A 35 KLVKPIQYDEVIEVERIFAD--PAFIEQHRQRILASFKDA 72 (218)
T ss_dssp EECSCCCTTSCEEECCSCCC--HHHHHHHHHHHHTTCTTC
T ss_pred hhcCCccCCceEEEEEeeCC--cccHHHHHHHHHHHHHHH
Confidence 45566788888877644333 456677777777776554
No 71
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=53.73 E-value=10 Score=27.27 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhCCCeEE
Q 029622 81 TAITMKRMLETQFPGIDV 98 (190)
Q Consensus 81 ~f~e~k~~L~~~yP~i~V 98 (190)
.-++++-.|.++||+++.
T Consensus 18 D~~dIA~~L~e~~Pd~DP 35 (77)
T 1uj8_A 18 DSREIGEALYDAYPDLDP 35 (77)
T ss_dssp CHHHHHHHHHHHSTTSCG
T ss_pred CHHHHHHHHHHHCCCCCc
Confidence 457999999999999764
No 72
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=53.71 E-value=21 Score=29.77 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=22.9
Q ss_pred EeccCcCcchhHHHHHHHHHhhCCCeEE
Q 029622 71 NFCASCSYRGTAITMKRMLETQFPGIDV 98 (190)
Q Consensus 71 ~YC~SCGY~~~f~e~k~~L~~~yP~i~V 98 (190)
..=-.|.|++.-+.+.+.+++.-||+.|
T Consensus 61 ~~~lPv~y~~~~~~l~~~i~~~~Pd~Vi 88 (228)
T 4hps_A 61 ICQIPCIFDTSLEHLYAAVDKYQPELVI 88 (228)
T ss_dssp EEEECSSTTHHHHHHHHHHHHHCCSEEE
T ss_pred EEEcceEeHHHHHHHHHHHHhhCCCEEE
Confidence 3456788999999999999998899753
No 73
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=53.31 E-value=3.9 Score=25.76 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 029622 31 PPKSASHHH 39 (190)
Q Consensus 31 ~~~~~~~~~ 39 (190)
+-|+|||||
T Consensus 33 siphhhhhh 41 (42)
T 3kl4_B 33 SIPHHHHHH 41 (42)
T ss_pred cCccccccC
Confidence 345555444
No 74
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=52.97 E-value=19 Score=30.05 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=30.9
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCC
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp 106 (190)
..||+|.+|.+-.....++++.+..++++|+++|+-+..+-.
T Consensus 5 ~~~l~i~~W~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~ 46 (408)
T 2uvj_A 5 EVNLRMSWWGGNGRHQVTLKALEEFHKQHPNINVKAEYTGWD 46 (408)
T ss_dssp CEEEEEEEECCHHHHHHHHHHHHHHHHHCTTEEEEEEEECST
T ss_pred ceEEEEEEECCcchHHHHHHHHHHHHHHCCCcEEEEEeCCHH
Confidence 357888888763344567777778888999999987766533
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=52.61 E-value=8.9 Score=32.44 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=19.6
Q ss_pred ceEEEEeccCcC---cchhHHHHHHHHHhhCCCeEEec
Q 029622 66 STVNINFCASCS---YRGTAITMKRMLETQFPGIDVVL 100 (190)
Q Consensus 66 ~tV~i~YC~SCG---Y~~~f~e~k~~L~~~yP~i~V~G 100 (190)
.+++|-+-..-. ++..|+.+.+.|.++. +++|+-
T Consensus 14 ~~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~l-G~~ve~ 50 (321)
T 3p7i_A 14 KALNFGIISTESQQNLKPQWTPFLQDMEKKL-GVKVNA 50 (321)
T ss_dssp CCEEEEECCSSCHHHHHHHHHHHHHHHHHHH-TSCEEE
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHHHHHHHH-CCCEEE
Confidence 345555544433 4566777777777776 454443
No 76
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=52.39 E-value=19 Score=27.11 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=19.0
Q ss_pred eEEEEeccCcCcc-hhHHHHHHHHHhhCC--CeEEecccCC
Q 029622 67 TVNINFCASCSYR-GTAITMKRMLETQFP--GIDVVLANYP 104 (190)
Q Consensus 67 tV~i~YC~SCGY~-~~f~e~k~~L~~~yP--~i~V~G~nYp 104 (190)
.|...+.+.|++= ....++++ +.++|. +++|.+-+..
T Consensus 52 vlv~F~atwC~~C~~~~~~l~~-l~~~~~~~~v~vv~is~d 91 (185)
T 2gs3_A 52 CIVTNVASQGGKTEVNYTQLVD-LHARYAECGLRILAFPCN 91 (185)
T ss_dssp EEEEEECSSSTTHHHHHHHHHH-HHHHHGGGTEEEEEEECC
T ss_pred EEEEEecCCCCchHHHHHHHHH-HHHHhhcCCeEEEEEECc
Confidence 3444444556543 33334433 445554 4888887653
No 77
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=51.60 E-value=27 Score=28.17 Aligned_cols=60 Identities=7% Similarity=0.013 Sum_probs=43.9
Q ss_pred cccccCCCceEEEEeccCcCcchhHHH-HHHHHHhhCC---CeEEecccCCCChHHHHHHhHhh
Q 029622 58 IVGGIGYGSTVNINFCASCSYRGTAIT-MKRMLETQFP---GIDVVLANYPPPLPKRLLAKVVP 117 (190)
Q Consensus 58 ~~~~~~~G~tV~i~YC~SCGY~~~f~e-~k~~L~~~yP---~i~V~G~nYpPp~~k~~Lak~l~ 117 (190)
..|..+.-.||.+.+-..|.|=+.|+. +...|+++|+ +++++-.++|..+.-...|++.-
T Consensus 33 ~~G~~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~~~s~~Aa~aa~ 96 (226)
T 3f4s_A 33 LLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSH 96 (226)
T ss_dssp EESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCSHHHHHHHHHGG
T ss_pred ccCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCChhHHHHHHHHH
Confidence 445444446899999999999999986 5678888883 58999999998665544554443
No 78
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=49.55 E-value=31 Score=26.00 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=18.5
Q ss_pred eEEEEeccCcCcc-hhHHHHHHHHHhhCC--CeEEecccCC
Q 029622 67 TVNINFCASCSYR-GTAITMKRMLETQFP--GIDVVLANYP 104 (190)
Q Consensus 67 tV~i~YC~SCGY~-~~f~e~k~~L~~~yP--~i~V~G~nYp 104 (190)
+|...+-..|++= ....++++ +.++|. +++|.+-+..
T Consensus 51 vll~F~atwC~~C~~~~~~l~~-l~~~~~~~~v~vv~vs~d 90 (190)
T 2vup_A 51 LLIYNVASKCGYTKGGYETATT-LYNKYKSQGFTVLAFPCN 90 (190)
T ss_dssp EEEEEECSSSTTHHHHHHHHHH-HHHHHGGGTCEEEEEECC
T ss_pred EEEEEecCCCCccHHHHHHHHH-HHHHHhcCCeEEEEEEcC
Confidence 3433443446544 33334433 445554 3787776654
No 79
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=49.46 E-value=23 Score=25.36 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCC
Q 029622 6 ILLLGLPLFLLCSDLLNLFTPPPPP 30 (190)
Q Consensus 6 ~~l~g~~~~~~~~d~~~~f~~~~~~ 30 (190)
+..+|+-+++.+.=++.++=|....
T Consensus 35 v~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 35 GVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHhCchhcc
Confidence 4567777788888888888776554
No 80
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=49.26 E-value=30 Score=29.75 Aligned_cols=25 Identities=4% Similarity=-0.137 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhhCCCeE-EecccCCC
Q 029622 81 TAITMKRMLETQFPGID-VVLANYPP 105 (190)
Q Consensus 81 ~f~e~k~~L~~~yP~i~-V~G~nYpP 105 (190)
+++++.+.+.++=||+. +.|.-|.-
T Consensus 48 ~l~~~v~~~~~~~~D~VliaGDl~d~ 73 (386)
T 3av0_A 48 SFKLCIKKILEIKPDVVLHSGDLFND 73 (386)
T ss_dssp HHHHHHHHHHTTCCSEEEECSCSBSS
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 46666666667778976 56765543
No 81
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=48.98 E-value=23 Score=29.39 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=28.3
Q ss_pred ceEEEEeccCc--CcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 66 STVNINFCASC--SYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 66 ~tV~i~YC~SC--GY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
.+++|.+|... .....++++.+..++++|+++|+-+.++
T Consensus 4 ~~~~l~~W~~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~ 44 (381)
T 1elj_A 4 EEGKVVIWHAMQPNELEVFQSLAEEYMALCPEVEIVFEQKP 44 (381)
T ss_dssp CCEEEEEEECCCHHHHHHHHHHHHHHHHHCTTEEEEEEECT
T ss_pred CceEEEEEecCCcchHHHHHHHHHHHHHHCCCcEEEEEECC
Confidence 34566677543 2445677777788899999999988875
No 82
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=48.71 E-value=13 Score=27.23 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=17.6
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCC
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFP 94 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP 94 (190)
.+|.+.+=..|++=+...++-+.+.+++.
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~ 58 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW 58 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC
Confidence 34555555578877766666555555554
No 83
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=48.58 E-value=23 Score=28.11 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=18.8
Q ss_pred cchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 78 YRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
+.+-+.++.+.+.++. +++|+-..++
T Consensus 79 ~~G~~~dl~~~i~~~~-G~~v~~~~~~ 104 (283)
T 2yln_A 79 LTGYDVEVTRAVAEKL-GVKVEFKETQ 104 (283)
T ss_dssp EESHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred EeeehHHHHHHHHHHc-CCceEEEECC
Confidence 4466778888887776 7887777765
No 84
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=48.36 E-value=5.3 Score=30.25 Aligned_cols=12 Identities=58% Similarity=1.096 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 029622 34 SASHHHHKPPIP 45 (190)
Q Consensus 34 ~~~~~~~~~~~~ 45 (190)
+||||||..|-|
T Consensus 4 ~~~~~~~~~~~~ 15 (191)
T 1oix_A 4 SHHHHHHGIPLP 15 (191)
T ss_dssp ------------
T ss_pred ccccccCCCCCC
Confidence 456666654543
No 85
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=48.14 E-value=2.9 Score=32.47 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.0
Q ss_pred EEEEeccCcCcchh
Q 029622 68 VNINFCASCSYRGT 81 (190)
Q Consensus 68 V~i~YC~SCGY~~~ 81 (190)
.....|..|+|...
T Consensus 44 ~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 44 RLLFECRTCSYVEE 57 (133)
T ss_dssp CBCCBCSSSCCBCC
T ss_pred eeEEECCCCCCcEE
Confidence 35789999999754
No 86
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=47.51 E-value=9.3 Score=32.53 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=15.7
Q ss_pred ccccEEEEECCeEeeec
Q 029622 172 SSGAFEVYCNDDLVSDL 188 (190)
Q Consensus 172 sTGAFEIylNd~lV~S~ 188 (190)
++|.|||.+||++|+.+
T Consensus 164 ~~Gf~~vW~dG~~v~~~ 180 (238)
T 2zzj_A 164 NTGYFKIWFDGAKVHEE 180 (238)
T ss_dssp TTEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCEEEEee
Confidence 69999999999999875
No 87
>3qfq_A Large T antigen; origin binding domain, protein-DNA complex, replication, DNA protein-DNA complex; HET: DNA; 2.90A {Merkel cell polyomavirus}
Probab=47.48 E-value=23 Score=27.90 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCc---cccccCCCceEEEEeccCcCcchhHHHHHHHHHhhC
Q 029622 46 SENLTPDFPSQK---IVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQF 93 (190)
Q Consensus 46 ~~~~~~~~~~~~---~~~~~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~y 93 (190)
..|.+.|||+.- .-.++..-.++.-.-.++- ...-+++.+-|. +|
T Consensus 10 ~~~~~~DfP~~L~~fLS~Ai~sNkt~~~FliyTT--~EK~~~Ly~kl~-kf 57 (135)
T 3qfq_A 10 ETPVPTDFPIDLSDYLSHAVYSNKTVSCFAIYTT--SDKAIELYDKIE-KF 57 (135)
T ss_dssp -CCCCCSSCGGGTTSSCCCSSCCCCEEEEEECCC--HHHHHHHHHHTG-GG
T ss_pred CCCCCCCChHHHHHHHhhHHHhcCCCceEEEEEc--HHHHHHHHHHHH-hc
Confidence 345889999764 2233333334443333322 566677777777 76
No 88
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=46.45 E-value=56 Score=24.80 Aligned_cols=21 Identities=5% Similarity=-0.153 Sum_probs=12.9
Q ss_pred HHHHHHHhhCCCeEEecccCC
Q 029622 84 TMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 84 e~k~~L~~~yP~i~V~G~nYp 104 (190)
.+.+.|.+.+..+.+.|..+.
T Consensus 44 Tl~~~L~~~~g~~~i~~d~~~ 64 (200)
T 4eun_A 44 TIAHGVADETGLEFAEADAFH 64 (200)
T ss_dssp HHHHHHHHHHCCEEEEGGGGS
T ss_pred HHHHHHHHhhCCeEEcccccc
Confidence 345556555556677777664
No 89
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=45.85 E-value=14 Score=28.62 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHhhCC
Q 029622 79 RGTAITMKRMLETQFP 94 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP 94 (190)
..+.++++++++++=+
T Consensus 45 e~Aa~~lk~ll~~~~~ 60 (145)
T 2d2a_A 45 PAAAIHIRELVAKQPG 60 (145)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 7889999999987633
No 90
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=45.65 E-value=12 Score=32.03 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=13.8
Q ss_pred chhHHHHHHHHHhhCCCeEEecccC
Q 029622 79 RGTAITMKRMLETQFPGIDVVLANY 103 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP~i~V~G~nY 103 (190)
-.....+.+.|+++. +..|+=+|-
T Consensus 34 D~~aR~la~~l~~~l-g~~vvV~N~ 57 (314)
T 2dvz_A 34 DIIARLVTQRMSQEL-GQPMVVENK 57 (314)
T ss_dssp HHHHHHHHHHHHHHH-TSCEEEEEC
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEC
Confidence 344445666666665 555665663
No 91
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, 2-(N-morphol ethanesulfonic acid (MES), IDP01892; HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
Probab=45.31 E-value=10 Score=30.77 Aligned_cols=42 Identities=5% Similarity=0.152 Sum_probs=22.7
Q ss_pred CCCCCCCCccccccCCCceEEEEeccCcCcchhHHHHHHHHHhhCCC
Q 029622 49 LTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPG 95 (190)
Q Consensus 49 ~~~~~~~~~~~~~~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~ 95 (190)
+..+||+.. + +-..++-.+-+.=..+..-+++++.|.++|++
T Consensus 16 ~~~~f~~~~----~-~~~di~~~l~s~~~i~~~i~~LA~~I~~~~~~ 57 (204)
T 3hvu_A 16 ENLYFQSNA----M-MNQDIEKVLISEEQIQEKVLELGAIIAEDYKN 57 (204)
T ss_dssp ---CCCCCC----C-GGGGEEEEEECHHHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCCCCch----h-hhhcCCcEeCCHHHHHHHHHHHHHHHHHHcCC
Confidence 566777542 1 22333333333334566777888888888863
No 92
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=44.81 E-value=12 Score=31.89 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=20.0
Q ss_pred EEeccCcCcchhHHHHHHHHHhhCCCeEEe
Q 029622 70 INFCASCSYRGTAITMKRMLETQFPGIDVV 99 (190)
Q Consensus 70 i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~ 99 (190)
...|.|-|-......+.+.|.+++ ++.+.
T Consensus 44 wih~~s~G~~~~~~~L~~~L~~~~-~v~v~ 72 (374)
T 2xci_A 44 WVHTASIGEFNTFLPILKELKREH-RILLT 72 (374)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHS-CEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcC-CEEEE
Confidence 455666676667778888888887 65544
No 93
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=44.35 E-value=6 Score=30.55 Aligned_cols=25 Identities=4% Similarity=0.254 Sum_probs=11.1
Q ss_pred EEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622 68 VNINFCASCSYRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 68 V~i~YC~SCGY~~~f~e~k~~L~~~yP~i 96 (190)
+++..+...|.. ++.......|.+.
T Consensus 75 ~~l~l~Dt~G~~----~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 75 VKLQIWDTAGQE----RFRSITQSYYRSA 99 (201)
T ss_dssp EEEEEEEECCSG----GGHHHHGGGSTTC
T ss_pred EEEEEEECCCcH----HHHHHHHHHHhcC
Confidence 345555555532 2333444445443
No 94
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=44.12 E-value=4.8 Score=33.85 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHhhCCC-----eEEecccCCCChHHHHHHhHh
Q 029622 79 RGTAITMKRMLETQFPG-----IDVVLANYPPPLPKRLLAKVV 116 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP~-----i~V~G~nYpPp~~k~~Lak~l 116 (190)
...|..++..|+-.-.+ +-|.+ --+..-|..+|--+
T Consensus 85 ~Ea~r~lrt~l~~~~~~~~~kvI~vts--~kgG~GKTtva~nL 125 (299)
T 3cio_A 85 VEAVRALRTSLHFAMMETENNILMITG--ATPDSGKTFVSSTL 125 (299)
T ss_dssp HHHHHHHHHHHHHHTSSCSCCEEEEEE--SSSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEC--CCCCCChHHHHHHH
Confidence 34455555555543321 22333 33556666655443
No 95
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=44.09 E-value=7.4 Score=29.05 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=36.7
Q ss_pred CCCceEEEEeccCcCcchhHHHHHHHHHhhCC---------CeEEecccCCCChHHHHHHhHhhHHHHHHHhHhhcCCcc
Q 029622 63 GYGSTVNINFCASCSYRGTAITMKRMLETQFP---------GIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQI 133 (190)
Q Consensus 63 ~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP---------~i~V~G~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~i 133 (190)
+.|.+|...|=..|++=+.++ +.+.+.|+ =++|.-..-++..+. ....+--+=.+++.=-|+-+
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~---~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la----~~~~V~g~PT~i~f~~G~ev 89 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWD---AEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLE----LARPVTFTPTFVLMAGDVES 89 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHH---HHTTTTGGGSHHHHHSCEEEEETTSCCCTTCB----CSSCCCSSSEEEEEETTEEE
T ss_pred cCCCEEEEEECCCCHHHHHHH---HHHHhhHHHhhhcccceEEEEECCCCCchhHH----HHCCCCCCCEEEEEECCEEE
Confidence 556777777766676666554 33444433 334544433332221 11111000012222248788
Q ss_pred ccccCCCc-hhhhhhhh
Q 029622 134 FPMLGMTP-PPWYYSLR 149 (190)
Q Consensus 134 F~~LG~~~-P~w~~~~~ 149 (190)
-+..|..+ ..++.|+.
T Consensus 90 ~Ri~G~~~~~~f~~~L~ 106 (116)
T 3dml_A 90 GRLEGYPGEDFFWPMLA 106 (116)
T ss_dssp EEEECCCCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHH
Confidence 87788854 44444553
No 96
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=43.84 E-value=7.5 Score=33.80 Aligned_cols=25 Identities=8% Similarity=-0.064 Sum_probs=16.7
Q ss_pred ccCCCChHHHHHHhHhhHHHHHHHh
Q 029622 101 ANYPPPLPKRLLAKVVPAVQIGVIG 125 (190)
Q Consensus 101 ~nYpPp~~k~~Lak~l~~~q~~lI~ 125 (190)
+-..++.+|+++|.+++..=+++++
T Consensus 54 e~~~~~~~r~~lAEfiGT~lLv~~g 78 (304)
T 3cn5_A 54 ELKLWSFWRAAIAEFIATLLFLYIT 78 (304)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567889999998877555544
No 97
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=43.76 E-value=29 Score=24.98 Aligned_cols=33 Identities=21% Similarity=0.560 Sum_probs=22.0
Q ss_pred CceEEEEe---ccCcCcchh-H-HHHHHHHHhhCCCeE
Q 029622 65 GSTVNINF---CASCSYRGT-A-ITMKRMLETQFPGID 97 (190)
Q Consensus 65 G~tV~i~Y---C~SCGY~~~-f-~e~k~~L~~~yP~i~ 97 (190)
+.+|.+.+ |.+|..... . .-+++.|+++.|+++
T Consensus 37 ~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~ 74 (88)
T 1xhj_A 37 DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVI 74 (88)
T ss_dssp SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCce
Confidence 45888888 666653332 2 235678888899985
No 98
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=43.56 E-value=18 Score=30.92 Aligned_cols=37 Identities=3% Similarity=0.007 Sum_probs=25.3
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCC
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp 106 (190)
.+..+++..|++. +++++++++.=+++-+.+++|.-.
T Consensus 45 ~~~~~~v~~ft~~------e~~~~~~~~~~~dilli~e~~~~~ 81 (373)
T 3fkq_A 45 YADKLEVYSFTDE------KNAIESVKEYRIDVLIAEEDFNID 81 (373)
T ss_dssp TTTTEEEEEESCH------HHHHHHHHHHTCSEEEEETTCCCC
T ss_pred cCCceEEEEECCH------HHHHHHHhcCCCCEEEEcchhhhh
Confidence 4566777777766 555666667667888888887553
No 99
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=43.38 E-value=31 Score=26.43 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=40.6
Q ss_pred CceEEEEeccCcCcchhHHHH---HHHHHhhCC-CeEEecccCCC-ChHHHHHHhHhhHH
Q 029622 65 GSTVNINFCASCSYRGTAITM---KRMLETQFP-GIDVVLANYPP-PLPKRLLAKVVPAV 119 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~---k~~L~~~yP-~i~V~G~nYpP-p~~k~~Lak~l~~~ 119 (190)
.++|...+-..|+|=+.|+.. .+.++++|| +++++--++|. .+.-...|++.-.+
T Consensus 15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~aa~a~~aA 74 (189)
T 3l9v_A 15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWALA 74 (189)
T ss_dssp CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSSSSTTHHHHHHHHHHH
T ss_pred CCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechhcccccHHHHHHHHHH
Confidence 578888999999999999876 367889998 58888888876 45444555554333
No 100
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=43.31 E-value=16 Score=26.83 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=17.2
Q ss_pred hccccEEEEECCeEeeecC
Q 029622 171 QSSGAFEVYCNDDLVSDLS 189 (190)
Q Consensus 171 ~sTGAFEIylNd~lV~S~~ 189 (190)
.+||...|++||+.||.+.
T Consensus 25 tttGkrvi~VDGkev~r~~ 43 (90)
T 3mx7_A 25 TTSGKRVVYVDGKEEIRKE 43 (90)
T ss_dssp TTTCCEEEEETTEEEEEEC
T ss_pred cccceEEEEECCEEEEecC
Confidence 5799999999999999874
No 101
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=43.30 E-value=16 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=14.8
Q ss_pred cchhHHHHHHHHHhhCCCe
Q 029622 78 YRGTAITMKRMLETQFPGI 96 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i 96 (190)
-..+-.++|+.|+++.|+.
T Consensus 44 ~~~TV~~LK~~I~~~~~g~ 62 (99)
T 2kdb_A 44 LNWTVGKLKTHLSNVYPSK 62 (99)
T ss_dssp TTSBHHHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3567789999999987653
No 102
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=43.26 E-value=17 Score=29.48 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=16.0
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEE
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDV 98 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V 98 (190)
.+.+++|-.-+...=..-=++++++|+++ +.+|
T Consensus 17 ~~~~MkIaIgsDhaG~~lK~~i~~~L~~~--G~eV 49 (169)
T 3ph3_A 17 RGSHMKIGIGSDHGGYNLKREIADFLKKR--GYEV 49 (169)
T ss_dssp ----CEEEEEECGGGHHHHHHHHHHHHHT--TCEE
T ss_pred cCCCCEEEEEeCchHHHHHHHHHHHHHHC--CCEE
Confidence 34456665555443222335777888776 4444
No 103
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=43.22 E-value=17 Score=28.61 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=8.6
Q ss_pred chhHHHHHHHHHh
Q 029622 79 RGTAITMKRMLET 91 (190)
Q Consensus 79 ~~~f~e~k~~L~~ 91 (190)
.++|.++.+.|++
T Consensus 29 ~~~~~~~~~~l~~ 41 (208)
T 2iss_D 29 QGDVREHVEALHK 41 (208)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCchHHHHHHHHH
Confidence 3477777777765
No 104
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=43.17 E-value=5 Score=34.09 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=3.8
Q ss_pred HHHhHhhHH
Q 029622 111 LLAKVVPAV 119 (190)
Q Consensus 111 ~Lak~l~~~ 119 (190)
.+||+++.+
T Consensus 113 iiAQ~lGA~ 121 (256)
T 3llq_A 113 VIAQVAGAI 121 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 105
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=43.10 E-value=6.5 Score=27.90 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=25.4
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
+.|...|=..|++=+.+...-+.+.++|+++.+..-+..
T Consensus 40 ~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d 78 (124)
T 1xfl_A 40 LVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTD 78 (124)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETT
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECc
Confidence 345555555577666666655667778999887666654
No 106
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=43.08 E-value=11 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=10.8
Q ss_pred hhhhhhccCCCCCCCCCCCCCCC
Q 029622 17 CSDLLNLFTPPPPPPPKSASHHH 39 (190)
Q Consensus 17 ~~d~~~~f~~~~~~~~~~~~~~~ 39 (190)
=+|+-.+ ++.+..|.+.|||||
T Consensus 37 K~~~~~~-tg~~~~p~~~~~~~~ 58 (59)
T 1d2d_A 37 KAEYKEK-TGKEYVPGLEHHHHH 58 (59)
T ss_dssp HHHHCSS-SSSSCCCSSCCCC--
T ss_pred HHHHHHH-hCCCCCCCccccccC
Confidence 3455555 556655555454444
No 107
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=42.67 E-value=32 Score=24.08 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=12.2
Q ss_pred chhHHHHHHHHHhhC
Q 029622 79 RGTAITMKRMLETQF 93 (190)
Q Consensus 79 ~~~f~e~k~~L~~~y 93 (190)
..+-.++|+.|+++.
T Consensus 34 ~~TV~~LK~~I~~~~ 48 (94)
T 2kan_A 34 TETVSSLKDKIHIVE 48 (94)
T ss_dssp TCBHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHH
Confidence 467889999999874
No 108
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=42.67 E-value=21 Score=28.63 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=13.5
Q ss_pred cccCCCceEEEEeccCc-CcchhHHHHH
Q 029622 60 GGIGYGSTVNINFCASC-SYRGTAITMK 86 (190)
Q Consensus 60 ~~~~~G~tV~i~YC~SC-GY~~~f~e~k 86 (190)
++...|.-+--+|+..| -...+|.++.
T Consensus 32 ~~~~~G~I~ieL~~~~aP~t~~NF~~L~ 59 (184)
T 3rdd_A 32 DGEPLGRVSFELFADKVPKTAENFRALS 59 (184)
T ss_dssp TTEEEEEEEEEECTTTSHHHHHHHHHHH
T ss_pred CCEeeeEEEEEEeCCCCcHHHHHHHHHh
Confidence 44456654455566655 2344444443
No 109
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=42.45 E-value=14 Score=29.38 Aligned_cols=14 Identities=14% Similarity=0.301 Sum_probs=11.4
Q ss_pred eEEEEeccCcCcch
Q 029622 67 TVNINFCASCSYRG 80 (190)
Q Consensus 67 tV~i~YC~SCGY~~ 80 (190)
.+.|.||.=+||-.
T Consensus 27 ~vtvlF~DI~gfT~ 40 (219)
T 1wc3_A 27 LITILFSDIVGFTR 40 (219)
T ss_dssp EEEEEEEEEESHHH
T ss_pred EEEEEEEEecChHH
Confidence 68899998888654
No 110
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=42.16 E-value=38 Score=24.06 Aligned_cols=14 Identities=29% Similarity=0.121 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHhhC
Q 029622 80 GTAITMKRMLETQF 93 (190)
Q Consensus 80 ~~f~e~k~~L~~~y 93 (190)
.+-.++|+.|+++.
T Consensus 38 ~TV~~LK~kI~~~~ 51 (95)
T 2kjr_A 38 LTVAQLKTKLEILT 51 (95)
T ss_dssp CBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 57789999998885
No 111
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=41.60 E-value=29 Score=25.86 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhCC-CeEE
Q 029622 82 AITMKRMLETQFP-GIDV 98 (190)
Q Consensus 82 f~e~k~~L~~~yP-~i~V 98 (190)
-+++...+++..| +..+
T Consensus 50 ~~~V~~vv~~~~p~d~~~ 67 (109)
T 1rwu_A 50 VDQVVEVVQRHAPGDYTP 67 (109)
T ss_dssp HHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHhCCCCCCc
Confidence 3567788888888 5543
No 112
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=41.60 E-value=5.5 Score=35.98 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=2.8
Q ss_pred ccCcCcchhHHHHHHHHHhhCCCeE
Q 029622 73 CASCSYRGTAITMKRMLETQFPGID 97 (190)
Q Consensus 73 C~SCGY~~~f~e~k~~L~~~yP~i~ 97 (190)
-.|||...+-.+-...-+.+.-.+.
T Consensus 38 lascgtntatkdsqdatekkveqva 62 (564)
T 4faj_A 38 LASCGTNTATKDSQDATEKKVEQVA 62 (564)
T ss_dssp --------------------CCCEE
T ss_pred HHhcCCCcccccchhhHHHHHHHhh
Confidence 4689988777777777777766553
No 113
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=40.77 E-value=5.8 Score=34.28 Aligned_cols=7 Identities=43% Similarity=0.923 Sum_probs=0.0
Q ss_pred cccCCCc
Q 029622 60 GGIGYGS 66 (190)
Q Consensus 60 ~~~~~G~ 66 (190)
|..|.|.
T Consensus 438 ~~~~~~~ 444 (449)
T 3iot_A 438 GKLGTGR 444 (449)
T ss_dssp -------
T ss_pred CccccCc
Confidence 3334443
No 114
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=40.72 E-value=9.7 Score=32.43 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=5.9
Q ss_pred ceEEEEeccCc
Q 029622 66 STVNINFCASC 76 (190)
Q Consensus 66 ~tV~i~YC~SC 76 (190)
..+++-||+-+
T Consensus 21 ~~~rlG~~~~~ 31 (301)
T 2j6v_A 21 HMIRLGYPCEN 31 (301)
T ss_dssp CSEEEEEESEE
T ss_pred CeeEEEEEEEe
Confidence 35566666433
No 115
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=40.69 E-value=39 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=20.2
Q ss_pred HHHHHHHHHhh------CCCeEEecccCCCChHHHHHHh
Q 029622 82 AITMKRMLETQ------FPGIDVVLANYPPPLPKRLLAK 114 (190)
Q Consensus 82 f~e~k~~L~~~------yP~i~V~G~nYpPp~~k~~Lak 114 (190)
-+++.+.|++. +|-++++.- ......+.+.+
T Consensus 44 ~~~l~~~L~~~G~~v~~~P~i~i~~~--~~~~l~~~l~~ 80 (286)
T 3d8t_A 44 KEEFKALAEKLGFTPLLFPVQATEKV--PVPEYRDQVRE 80 (286)
T ss_dssp HHHHHHHHHHHTCEEEECCCEEEEEE--ECTTHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEeeeEEEecC--CHHHHHHHHHh
Confidence 68888888876 588888764 23344444433
No 116
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=40.66 E-value=11 Score=31.13 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=15.5
Q ss_pred eEEEEeccCcCcch---hHHHHHHHHHhh
Q 029622 67 TVNINFCASCSYRG---TAITMKRMLETQ 92 (190)
Q Consensus 67 tV~i~YC~SCGY~~---~f~e~k~~L~~~ 92 (190)
.|+|.+... +..+ -+..+.+.|.++
T Consensus 22 ~MRIL~~~~-p~~GHv~P~l~LA~~L~~r 49 (400)
T 4amg_A 22 SMRALFITS-PGLSHILPTVPLAQALRAL 49 (400)
T ss_dssp CCEEEEECC-SSHHHHGGGHHHHHHHHHT
T ss_pred CCeEEEECC-CchhHHHHHHHHHHHHHHC
Confidence 467776543 3333 346788888877
No 117
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=40.65 E-value=21 Score=25.38 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=18.3
Q ss_pred CCceEEEEe-----ccCcCcchhHHHHHHHHHhhC
Q 029622 64 YGSTVNINF-----CASCSYRGTAITMKRMLETQF 93 (190)
Q Consensus 64 ~G~tV~i~Y-----C~SCGY~~~f~e~k~~L~~~y 93 (190)
+..+|+|.. ...+.-..+-.++|+.|+++.
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~ 61 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKAN 61 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHH
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 445666653 223344567789999998875
No 118
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=40.39 E-value=29 Score=29.13 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=19.3
Q ss_pred cchhHHHHHHHHHhh---CCCeEEecccCCCC
Q 029622 78 YRGTAITMKRMLETQ---FPGIDVVLANYPPP 106 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~---yP~i~V~G~nYpPp 106 (190)
|......+.+.+.++ .++++|+-+|.+-+
T Consensus 45 ~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~ 76 (327)
T 4ddd_A 45 YYPIGGSICRFIASDYGKDNKIICSISSTTGS 76 (327)
T ss_dssp HHHHHHHHHHHHHHHHGGGTSEEEEEECCCCH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEEecCcH
Confidence 344445667777776 48999888876543
No 119
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=40.14 E-value=35 Score=26.71 Aligned_cols=39 Identities=5% Similarity=0.051 Sum_probs=21.0
Q ss_pred ceEEEEe-ccCcCc-chhHHHHHHHHHhhC--CCeEEecccCCC
Q 029622 66 STVNINF-CASCSY-RGTAITMKRMLETQF--PGIDVVLANYPP 105 (190)
Q Consensus 66 ~tV~i~Y-C~SCGY-~~~f~e~k~~L~~~y--P~i~V~G~nYpP 105 (190)
++|.+.+ +.-|.+ +....++++ +.++| .+++|.+-+...
T Consensus 54 ~vvl~F~pa~~C~~C~~~~~~l~~-l~~~~~~~~v~vv~Is~D~ 96 (213)
T 2i81_A 54 YVLLYFYPLDFTFVCPSEIIALDK-ALDAFHERNVELLGCSVDS 96 (213)
T ss_dssp EEEEEECSCTTSSHHHHHHHHHHH-THHHHHHTTEEEEEEESSC
T ss_pred eEEEEEEcCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCC
Confidence 3455555 455654 333334433 34445 578888876653
No 120
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=40.06 E-value=37 Score=25.32 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=19.0
Q ss_pred CceEEEEe-ccCcCcch-hHHHHHHHHHhhCC--CeEEecccCC
Q 029622 65 GSTVNINF-CASCSYRG-TAITMKRMLETQFP--GIDVVLANYP 104 (190)
Q Consensus 65 G~tV~i~Y-C~SCGY~~-~f~e~k~~L~~~yP--~i~V~G~nYp 104 (190)
|..+.+.| -+.|++=. ...+++ .+.++|. +++|.+-+..
T Consensus 49 Gk~vlv~F~atwC~~C~~~~p~l~-~l~~~~~~~~v~vv~vs~d 91 (181)
T 2p31_A 49 GSVSLVVNVASECGFTDQHYRALQ-QLQRDLGPHHFNVLAFPCN 91 (181)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHH-HHHHHHGGGTEEEEEEECC
T ss_pred CCEEEEEEeccCCCCcHHHHHHHH-HHHHHhhcCCEEEEEEECc
Confidence 44444443 34455433 333333 3445554 4788776653
No 121
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=39.67 E-value=6.1 Score=34.85 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=6.8
Q ss_pred HHHHHHHHhhCC
Q 029622 83 ITMKRMLETQFP 94 (190)
Q Consensus 83 ~e~k~~L~~~yP 94 (190)
..++++|.+++|
T Consensus 106 ~~v~~~i~~~lp 117 (332)
T 2es4_D 106 ALVRREIAAQLD 117 (332)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC
Confidence 445556666665
No 122
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=39.55 E-value=6.2 Score=32.03 Aligned_cols=6 Identities=33% Similarity=-0.103 Sum_probs=2.7
Q ss_pred CceEEE
Q 029622 65 GSTVNI 70 (190)
Q Consensus 65 G~tV~i 70 (190)
|.+|.+
T Consensus 68 G~~V~~ 73 (285)
T 2c07_A 68 VSHVIC 73 (285)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 445544
No 123
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=39.54 E-value=6.2 Score=34.01 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHhhCC---CeE--Eec-ccC--CCChHHHHHHhHhhHHHHHH
Q 029622 79 RGTAITMKRMLETQFP---GID--VVL-ANY--PPPLPKRLLAKVVPAVQIGV 123 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP---~i~--V~G-~nY--pPp~~k~~Lak~l~~~q~~l 123 (190)
-++..++++.++++=| .+. ++. ... -|.=|+.+|--+++-.|..+
T Consensus 38 pr~l~~~~k~ve~~g~~sPe~i~~f~ALse~~~TP~D~~~ml~avlgg~q~a~ 90 (262)
T 1d1d_A 38 PKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMRVILGPAPYAL 90 (262)
T ss_dssp HHHHHHHHHHHHHHCTTSSHHHHHHHHHHTSCCCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHcCCCChHHHHHHHHHHcChHHHHH
Confidence 3567888999988844 332 222 233 45567766655556666664
No 124
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=39.28 E-value=19 Score=31.36 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=14.0
Q ss_pred CCCCCC----CCccccccCCCceEEEEecc
Q 029622 49 LTPDFP----SQKIVGGIGYGSTVNINFCA 74 (190)
Q Consensus 49 ~~~~~~----~~~~~~~~~~G~tV~i~YC~ 74 (190)
.+++|| +.|+. ..|.|+.+.-..
T Consensus 24 ~~~~f~~~~R~~KPR---~~GlT~v~Dkgl 50 (276)
T 1u83_A 24 NDFSLELPVRTNKPR---ETGQSILIDNGY 50 (276)
T ss_dssp -CCCCCCCCCCCSSC---SSSCEEEEESSC
T ss_pred ccccCCCCCcCCCCc---ccCceEEecCCC
Confidence 467777 33454 678887776443
No 125
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=39.11 E-value=69 Score=26.79 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=28.3
Q ss_pred eEEEEeccCcC-cchhHHHHHHHHHhhCCCeEEecccCCCC
Q 029622 67 TVNINFCASCS-YRGTAITMKRMLETQFPGIDVVLANYPPP 106 (190)
Q Consensus 67 tV~i~YC~SCG-Y~~~f~e~k~~L~~~yP~i~V~G~nYpPp 106 (190)
||+|-.+.+-+ ....++++.+..++++|+++|+-+.++-.
T Consensus 17 tl~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~ 57 (412)
T 2z8f_A 17 NITYMHRLPDSEGMTLVNDIVAKWNKQHPDIQVKATKFDGK 57 (412)
T ss_dssp EEEEEECCCCCTTSCCHHHHHHHHHHHCTTEEEEEEECSSC
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHHCCCceEEEEecCCc
Confidence 55555544321 34468888888899999999988877665
No 126
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=38.91 E-value=9.8 Score=33.43 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=6.4
Q ss_pred CCCceEEEEecc
Q 029622 63 GYGSTVNINFCA 74 (190)
Q Consensus 63 ~~G~tV~i~YC~ 74 (190)
-.|..|++-||+
T Consensus 17 ~~g~~mrlGY~c 28 (310)
T 3tc3_A 17 IEGRHMRVGYVS 28 (310)
T ss_dssp ----CEEEEEES
T ss_pred ccCceEEeeeee
Confidence 346678888884
No 127
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=38.80 E-value=1.1e+02 Score=22.25 Aligned_cols=49 Identities=22% Similarity=0.227 Sum_probs=35.9
Q ss_pred ccccCCCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCCh
Q 029622 59 VGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPL 107 (190)
Q Consensus 59 ~~~~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~ 107 (190)
.|....-.+|.+.+-..|.|=+.++..-+-+.+++++++|+-.++|...
T Consensus 17 ~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~ 65 (175)
T 3gyk_A 17 LGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILG 65 (175)
T ss_dssp EECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSC
T ss_pred cCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCC
Confidence 3443444577778888888888887666666777999999888888753
No 128
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=38.77 E-value=80 Score=25.72 Aligned_cols=44 Identities=7% Similarity=-0.012 Sum_probs=21.6
Q ss_pred CCCCCCCCc--cccccCCCceEEEEeccCcCcchhHHHHHHHHHhh
Q 029622 49 LTPDFPSQK--IVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQ 92 (190)
Q Consensus 49 ~~~~~~~~~--~~~~~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~ 92 (190)
+-+|..++. ..++.-.|.-+.|+=..+||=...-..+++.+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 9 SGVDLGTENLYFQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp -----------------CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 445555553 22222346678888888888777777777777665
No 129
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=38.71 E-value=22 Score=29.82 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=8.5
Q ss_pred HHHHHHHhhCCCeE
Q 029622 84 TMKRMLETQFPGID 97 (190)
Q Consensus 84 e~k~~L~~~yP~i~ 97 (190)
.+.+.+.+..|+-+
T Consensus 36 tv~~~i~~~~P~~~ 49 (286)
T 2jfq_A 36 TVAKEIMRQLPNET 49 (286)
T ss_dssp HHHHHHHHHCTTCC
T ss_pred HHHHHHHHHCCCcc
Confidence 44566666677654
No 130
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=38.62 E-value=37 Score=26.44 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=22.5
Q ss_pred eEEEEeccCcCc-chhHHHHHHHHHhhCCC--eEEecccCC
Q 029622 67 TVNINFCASCSY-RGTAITMKRMLETQFPG--IDVVLANYP 104 (190)
Q Consensus 67 tV~i~YC~SCGY-~~~f~e~k~~L~~~yP~--i~V~G~nYp 104 (190)
+|...++..|++ +....++++ +.++|.+ ++|.+-+..
T Consensus 62 vll~F~a~~C~~C~~~~~~l~~-l~~~~~~~~v~vv~Vs~d 101 (218)
T 3u5r_E 62 LLVAFISNRCPFVVLIREALAK-FAGDYAGQGLAVVAINSN 101 (218)
T ss_dssp EEEEECCSSCHHHHTTHHHHHH-HHHHHTTTTEEEEEEECS
T ss_pred EEEEEECCCCccHHHHHHHHHH-HHHHHHhCCcEEEEEECC
Confidence 566667777775 444444444 5566654 787776653
No 131
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=38.39 E-value=6.6 Score=32.28 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=0.0
Q ss_pred CCCCCC
Q 029622 35 ASHHHH 40 (190)
Q Consensus 35 ~~~~~~ 40 (190)
||||||
T Consensus 3 ~~~~~~ 8 (198)
T 4dve_A 3 HHHHHH 8 (198)
T ss_dssp ------
T ss_pred cchhhH
Confidence 333333
No 132
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=38.38 E-value=7.3 Score=35.30 Aligned_cols=6 Identities=0% Similarity=0.075 Sum_probs=2.4
Q ss_pred HHHHHH
Q 029622 108 PKRLLA 113 (190)
Q Consensus 108 ~k~~La 113 (190)
.+..+.
T Consensus 92 v~~vl~ 97 (480)
T 2zyd_A 92 TDAAID 97 (480)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 133
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=37.65 E-value=81 Score=24.88 Aligned_cols=52 Identities=8% Similarity=-0.034 Sum_probs=38.4
Q ss_pred ccccCCCceEEEEeccCcCcchhHH-HHHHHHHhhC---CCeEEecccCCCChHHH
Q 029622 59 VGGIGYGSTVNINFCASCSYRGTAI-TMKRMLETQF---PGIDVVLANYPPPLPKR 110 (190)
Q Consensus 59 ~~~~~~G~tV~i~YC~SCGY~~~f~-e~k~~L~~~y---P~i~V~G~nYpPp~~k~ 110 (190)
.|....-.||.+..-..|.|=+.|. ++...|+++| +.++++=.+||..+.-.
T Consensus 10 ~G~~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~pl~~~s~ 65 (205)
T 3gmf_A 10 LGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDM 65 (205)
T ss_dssp ESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECCCSHHHH
T ss_pred ecCCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeCCCCcchH
Confidence 3444444588888888888888876 6778888888 55889888998765443
No 134
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=37.21 E-value=17 Score=25.24 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=16.2
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhC
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQF 93 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~y 93 (190)
|.++.+. +.-..+-.++|+.|+++.
T Consensus 27 g~~~~l~----v~~~~TV~~LK~~I~~~~ 51 (93)
T 2l7r_A 27 QELHTFE----VTGQETVAQIKAHVASLE 51 (93)
T ss_dssp SSEEEEE----CCSSCBHHHHHHHHHHHH
T ss_pred CCEEEEE----eCCCCcHHHHHHHHHHHh
Confidence 4555443 233567889999998873
No 135
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=36.99 E-value=35 Score=25.53 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHhhCC
Q 029622 80 GTAITMKRMLETQFP 94 (190)
Q Consensus 80 ~~f~e~k~~L~~~yP 94 (190)
+.|.++.+.|++.||
T Consensus 62 sdF~~L~~~L~~~~~ 76 (129)
T 4az9_A 62 SEFHALHKKLKKCIK 76 (129)
T ss_dssp HHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhCC
Confidence 467888889999887
No 136
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=36.61 E-value=14 Score=25.33 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=4.2
Q ss_pred CCCCCCCCCCCC
Q 029622 43 PIPSENLTPDFP 54 (190)
Q Consensus 43 ~~~~~~~~~~~~ 54 (190)
|+++...+..|-
T Consensus 8 ~~~~~~~~p~f~ 19 (104)
T 1pd6_A 8 SSMDEKKSTAFQ 19 (104)
T ss_dssp ---CCSTTSSCS
T ss_pred CCCCccCCCEEE
Confidence 333444445553
No 137
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens}
Probab=36.51 E-value=95 Score=24.22 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=11.5
Q ss_pred CcchhHHHHHHHHHhh
Q 029622 77 SYRGTAITMKRMLETQ 92 (190)
Q Consensus 77 GY~~~f~e~k~~L~~~ 92 (190)
+....|..+.+.|.++
T Consensus 71 ~~~~~~~~~~~~l~~~ 86 (342)
T 3hju_A 71 EHSGRYEELARMLMGL 86 (342)
T ss_dssp CCGGGGHHHHHHHHTT
T ss_pred cccchHHHHHHHHHhC
Confidence 3455788888888775
No 138
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=36.39 E-value=60 Score=24.34 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=18.3
Q ss_pred CceEEEEe----ccCcCcchhHHHHHHHHHhhCC--CeEEecccCC
Q 029622 65 GSTVNINF----CASCSYRGTAITMKRMLETQFP--GIDVVLANYP 104 (190)
Q Consensus 65 G~tV~i~Y----C~SCGY~~~f~e~k~~L~~~yP--~i~V~G~nYp 104 (190)
|..+.+.| |..| +....++++ +.++|. +++|.+-+..
T Consensus 46 Gk~vlv~F~atwC~~C--~~~~p~l~~-l~~~~~~~~~~vi~is~d 88 (187)
T 3dwv_A 46 GSPLLIYNVASKCGYT--KGGYETATT-LYNKYKSQGFTVLAFPSN 88 (187)
T ss_dssp TSCEEEEEECCBCSCC--TTHHHHHHH-HHHHHGGGTCEEEEEEBC
T ss_pred CCEEEEEEecCCCCCc--HHHHHHHHH-HHHHhhhCCeEEEEEECc
Confidence 44444544 5555 333333333 344443 4787776643
No 139
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=36.23 E-value=33 Score=27.17 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=10.9
Q ss_pred cCCCceEEEEeccCc
Q 029622 62 IGYGSTVNINFCASC 76 (190)
Q Consensus 62 ~~~G~tV~i~YC~SC 76 (190)
+..|.+|++.|-...
T Consensus 25 i~~gd~V~v~Y~g~l 39 (169)
T 4dt4_A 25 VQSNSAVLVHFTLKL 39 (169)
T ss_dssp CCTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEE
Confidence 456788999887643
No 140
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=36.03 E-value=44 Score=24.81 Aligned_cols=39 Identities=10% Similarity=0.243 Sum_probs=19.2
Q ss_pred CceEEEEe-ccCcCcc-hhHHHHHHHHHhhCC--CeEEecccCC
Q 029622 65 GSTVNINF-CASCSYR-GTAITMKRMLETQFP--GIDVVLANYP 104 (190)
Q Consensus 65 G~tV~i~Y-C~SCGY~-~~f~e~k~~L~~~yP--~i~V~G~nYp 104 (190)
|..+.+.| -+.|++= ....++++ +.++|. +++|.+-+..
T Consensus 47 gk~vll~F~atwC~~C~~~~~~l~~-l~~~~~~~~v~vv~vs~d 89 (183)
T 2obi_A 47 GFVCIVTNVASQCGKTEVNYTQLVD-LHARYAECGLRILAFPCN 89 (183)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHH-HHHHHGGGTEEEEEEECC
T ss_pred CCEEEEEEeCCCCCCcHHHHHHHHH-HHHHHhcCCeEEEEEECC
Confidence 44344443 3445533 33344433 455554 4888776643
No 141
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=35.68 E-value=37 Score=25.45 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=12.6
Q ss_pred chhHHHHHHHHHhhC
Q 029622 79 RGTAITMKRMLETQF 93 (190)
Q Consensus 79 ~~~f~e~k~~L~~~y 93 (190)
..+.++++++++++=
T Consensus 27 ~~Aa~~ik~ll~~~~ 41 (125)
T 2k4z_A 27 PAAAEQVLKAAKQGG 41 (125)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhCC
Confidence 788999999997763
No 142
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=35.53 E-value=29 Score=28.24 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=15.5
Q ss_pred cchhHHHHHHHHHhhCCCeEE
Q 029622 78 YRGTAITMKRMLETQFPGIDV 98 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V 98 (190)
+-++-|++.++|.+.-|+++.
T Consensus 36 FIKTVEDl~Ealv~svP~ikF 56 (173)
T 1rlh_A 36 FIKTVEDLNEIIRTHVPGSKY 56 (173)
T ss_dssp SCCCTHHHHHHTGGGSTTSEE
T ss_pred ccccHHHHHHHHhhcCCCCeE
Confidence 456778888888888888753
No 143
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=35.46 E-value=69 Score=25.05 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=22.8
Q ss_pred ceEEEEe-ccCcCcch-hHHHHHHHHHhhC--CCeEEecccCCC
Q 029622 66 STVNINF-CASCSYRG-TAITMKRMLETQF--PGIDVVLANYPP 105 (190)
Q Consensus 66 ~tV~i~Y-C~SCGY~~-~f~e~k~~L~~~y--P~i~V~G~nYpP 105 (190)
++|.+.| +..|.+=. ...++++ +.++| .+++|.+-+...
T Consensus 58 ~vll~F~pa~~Cp~C~~~~~~l~~-l~~~~~~~~v~vv~Is~D~ 100 (220)
T 1zye_A 58 YLVLFFYPLDFTFVCPTEIIAFSD-KASEFHDVNCEVVAVSVDS 100 (220)
T ss_dssp EEEEEECSCTTCSSSHHHHHHHHH-HHHHHHHTTEEEEEEESSC
T ss_pred eEEEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCC
Confidence 4556666 56676533 3334444 45555 678888877664
No 144
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=35.42 E-value=1e+02 Score=23.99 Aligned_cols=50 Identities=12% Similarity=-0.030 Sum_probs=38.5
Q ss_pred cccccCCCceEEEEeccCcCcchhHHH-HHHHHHhhCC---CeEEecccCCCCh
Q 029622 58 IVGGIGYGSTVNINFCASCSYRGTAIT-MKRMLETQFP---GIDVVLANYPPPL 107 (190)
Q Consensus 58 ~~~~~~~G~tV~i~YC~SCGY~~~f~e-~k~~L~~~yP---~i~V~G~nYpPp~ 107 (190)
..|..+.-.||...+-..|.|=+.|++ +...|+++|+ +++++-.++|-..
T Consensus 23 ~~G~~~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~ 76 (202)
T 3gha_A 23 VLGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHG 76 (202)
T ss_dssp EESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSH
T ss_pred eecCCCCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccc
Confidence 445555556899999999999898875 4688899995 5888888888653
No 145
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=35.37 E-value=47 Score=25.92 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=20.4
Q ss_pred eEEEEeccCcCcchh-HHHHHHHHHhhCC--CeEEecccCC
Q 029622 67 TVNINFCASCSYRGT-AITMKRMLETQFP--GIDVVLANYP 104 (190)
Q Consensus 67 tV~i~YC~SCGY~~~-f~e~k~~L~~~yP--~i~V~G~nYp 104 (190)
.|...+.+.|+.=+. +.++.+ |.++|. +++|.|-+..
T Consensus 50 vlv~FwatwC~~C~~e~p~l~~-l~~~~~~~g~~vv~v~~d 89 (208)
T 2f8a_A 50 LLIENVASLGGTTVRDYTQMNE-LQRRLGPRGLVVLGFPCN 89 (208)
T ss_dssp EEEEEECSSSTTHHHHHHHHHH-HHHHHGGGTEEEEEEECC
T ss_pred EEEEEECCCCccHHHHHHHHHH-HHHHccCCCeEEEEEECC
Confidence 444444555665443 555544 445554 4888887764
No 146
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Probab=35.30 E-value=8.5 Score=27.53 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=0.4
Q ss_pred CCCCCCCCCCC
Q 029622 31 PPKSASHHHHK 41 (190)
Q Consensus 31 ~~~~~~~~~~~ 41 (190)
.+|++||||||
T Consensus 104 ~~~~~~~~~~~ 114 (114)
T 3qwq_B 104 DKPSQHHHHHH 114 (114)
T ss_dssp C----------
T ss_pred CCcccccccCC
Confidence 45556655553
No 147
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=35.28 E-value=7.9 Score=34.09 Aligned_cols=8 Identities=50% Similarity=0.754 Sum_probs=3.9
Q ss_pred ccccccCC
Q 029622 132 QIFPMLGM 139 (190)
Q Consensus 132 ~iF~~LG~ 139 (190)
++...||+
T Consensus 79 el~~~L~~ 86 (395)
T 3b9f_I 79 QILEGLGL 86 (395)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 44444555
No 148
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=35.26 E-value=33 Score=27.16 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=16.6
Q ss_pred ccccCCCceEEEEeccCcCcchhHHHHHHHH
Q 029622 59 VGGIGYGSTVNINFCASCSYRGTAITMKRML 89 (190)
Q Consensus 59 ~~~~~~G~tV~i~YC~SCGY~~~f~e~k~~L 89 (190)
+++...|.-+--+|+..| -++-+.+.++.
T Consensus 20 i~~t~~G~i~ieL~~~~a--P~t~~NF~~L~ 48 (172)
T 2haq_A 20 IDSEPLGRITIGLFGKDA--PLTTENFRQLC 48 (172)
T ss_dssp ETTEEEEEEEEEECTTTC--HHHHHHHHHHH
T ss_pred ECCEecceEEEEEeCCCC--cHHHHHHHHHh
Confidence 345566765566677766 44444445545
No 149
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=35.26 E-value=8 Score=33.98 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=6.8
Q ss_pred hHHHHHHHHHhhC
Q 029622 81 TAITMKRMLETQF 93 (190)
Q Consensus 81 ~f~e~k~~L~~~y 93 (190)
..+++..+.++-+
T Consensus 50 ~a~~Ia~L~~~G~ 62 (332)
T 4axs_A 50 PAAKIAALIQEGH 62 (332)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 3455555555545
No 150
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=35.24 E-value=13 Score=31.07 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCC
Q 029622 34 SASHHHHKPPIP-SENLTPDFPSQ 56 (190)
Q Consensus 34 ~~~~~~~~~~~~-~~~~~~~~~~~ 56 (190)
+||||||+--.+ ....|.+.|..
T Consensus 2 ~~~~~~~~~~~~~~~e~Pf~iP~~ 25 (412)
T 3okg_A 2 SHHHHHHSMDIEFMTEGPYKLPPG 25 (412)
T ss_dssp -------------CCSCSSCCCTT
T ss_pred CccccccccchhhhhcCCccCCCC
Confidence 355555543343 33456666654
No 151
>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A
Probab=35.23 E-value=8 Score=34.22 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=5.4
Q ss_pred cCCccccccC
Q 029622 129 AGEQIFPMLG 138 (190)
Q Consensus 129 ~G~~iF~~LG 138 (190)
.|..++..||
T Consensus 161 ~g~Pl~~LLG 170 (412)
T 4h1z_A 161 AGLPVCKLLG 170 (412)
T ss_dssp HTCBGGGGTT
T ss_pred cCCCHHHhcC
Confidence 3555555555
No 152
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=35.17 E-value=57 Score=24.23 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=19.9
Q ss_pred ceEEEEeccCcCc-chhHHHHHHHHHhhCCCeEEecccC
Q 029622 66 STVNINFCASCSY-RGTAITMKRMLETQFPGIDVVLANY 103 (190)
Q Consensus 66 ~tV~i~YC~SCGY-~~~f~e~k~~L~~~yP~i~V~G~nY 103 (190)
++|...|...|++ +....+++++.++ +++|.+-+.
T Consensus 60 ~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~ 95 (176)
T 3kh7_A 60 PALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINY 95 (176)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEE
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeC
Confidence 3455555555654 4444555555444 788777664
No 153
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=35.06 E-value=28 Score=28.80 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=22.3
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEE
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDV 98 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V 98 (190)
++|.| =+|-+-.+...++.+.|...+|+...
T Consensus 34 pKvLI--TTSr~pS~r~r~fakeL~~~lPns~~ 64 (217)
T 2cxh_A 34 YRILV--TTSRRPSPRIRSFVKDLSATIPGAFR 64 (217)
T ss_dssp CEEEE--EESSSCCHHHHHHHHHHHTTSTTEEE
T ss_pred CeEEE--EcCCCCCHHHHHHHHHHHHHCCCCEE
Confidence 44444 44555567778899999999998864
No 154
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=34.95 E-value=8.9 Score=27.75 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=9.6
Q ss_pred CCceEEEEeccCcCcchhH
Q 029622 64 YGSTVNINFCASCSYRGTA 82 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f 82 (190)
.|..+...=|..|++-...
T Consensus 17 ~~~~m~~rAC~~C~~v~~~ 35 (81)
T 3p8b_A 17 RGSHMSEKACRHCHYITSE 35 (81)
T ss_dssp -----CCEEETTTCBEESS
T ss_pred CCcchhHHHHhhCCCccCC
Confidence 3445556678888876543
No 155
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=34.88 E-value=68 Score=26.67 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=33.2
Q ss_pred eEE-EEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHh
Q 029622 67 TVN-INFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVV 116 (190)
Q Consensus 67 tV~-i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l 116 (190)
+|+ +.+|.+ .....++++.+..++++|+++|+-+.++-.....+..|+.
T Consensus 2 ~l~~~~~W~~-~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~~kl~ 51 (400)
T 2b3f_A 2 KLEIFSWWAG-DEGPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLK 51 (400)
T ss_dssp EEEEEESCCG-GGCHHHHHHHHHHHHHCTTCEEEEEECCCGGGHHHHHHHH
T ss_pred eEEEEEecCC-cHHHHHHHHHHHHHHHCCCceEEEEecCCCcchhHHHHHH
Confidence 344 345666 6677888998999999999999887765422234444433
No 156
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=34.79 E-value=8.2 Score=33.59 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=7.0
Q ss_pred hcCCccccccCC
Q 029622 128 VAGEQIFPMLGM 139 (190)
Q Consensus 128 v~G~~iF~~LG~ 139 (190)
..|..++..||-
T Consensus 134 ~~g~Pl~~llGg 145 (386)
T 1wue_A 134 RQQKSLTEFFGP 145 (386)
T ss_dssp HTTSBGGGGSSS
T ss_pred HhCCcHHHHhCC
Confidence 346666666653
No 157
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*
Probab=34.61 E-value=22 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=21.6
Q ss_pred EEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 68 V~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
++|--... ||-+ .++-|.|.++ |+++|.+-|=|
T Consensus 18 ikVgI~G~-G~iG--r~llR~l~~~-p~veivaindp 50 (354)
T 3cps_A 18 GTLGINGF-GRIG--RLVLRACMER-NDITVVAINDP 50 (354)
T ss_dssp CEEEEECC-SHHH--HHHHHHHHTC-SSCEEEEEECT
T ss_pred eEEEEECC-CHHH--HHHHHHHHcC-CCeEEEEecCC
Confidence 44444444 5544 4778888765 99998887753
No 158
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=34.36 E-value=23 Score=27.84 Aligned_cols=15 Identities=27% Similarity=0.374 Sum_probs=9.1
Q ss_pred HHHHHHHhhCC-CeEE
Q 029622 84 TMKRMLETQFP-GIDV 98 (190)
Q Consensus 84 e~k~~L~~~yP-~i~V 98 (190)
++.+.|...+| .+.+
T Consensus 38 TLl~~L~g~~pG~i~~ 53 (218)
T 1z6g_A 38 TLIKKLLNEFPNYFYF 53 (218)
T ss_dssp HHHHHHHHHSTTTEEE
T ss_pred HHHHHHHhhCCCcEEE
Confidence 34666666677 4555
No 159
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=34.35 E-value=8.4 Score=31.65 Aligned_cols=8 Identities=0% Similarity=-0.280 Sum_probs=4.6
Q ss_pred CCeEEecc
Q 029622 94 PGIDVVLA 101 (190)
Q Consensus 94 P~i~V~G~ 101 (190)
.+..+.|.
T Consensus 95 ~~~v~~G~ 102 (288)
T 1jxh_A 95 IDTTKIGM 102 (288)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 35556674
No 160
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=34.32 E-value=11 Score=31.29 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=18.1
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccC-CCChHH
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANY-PPPLPK 109 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nY-pPp~~k 109 (190)
|..|.|..|.= +. -++. +++ +.-+| -.|-.+ |.++-+
T Consensus 18 ~~~M~VKICGi---t~-~ed~-~a~-~~gaD--~iGfIf~~~SpR~ 55 (228)
T 4aaj_A 18 GSHMFVKICGI---KS-LEEL-EIV-EKHAD--ATGVVVNSNSKRR 55 (228)
T ss_dssp --CCEEEECCC---CS-HHHH-HHH-HTTCS--EEEEECSSSSTTB
T ss_pred CCceEEEECCC---Cc-HHHH-HHH-HcCCC--EEEEEecCCCCCC
Confidence 44577777653 32 3555 355 34444 445443 555544
No 161
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=34.10 E-value=31 Score=29.38 Aligned_cols=10 Identities=0% Similarity=0.205 Sum_probs=4.9
Q ss_pred HHHHHHHHhh
Q 029622 83 ITMKRMLETQ 92 (190)
Q Consensus 83 ~e~k~~L~~~ 92 (190)
..+.+.|+++
T Consensus 38 l~la~~L~~~ 47 (441)
T 2yjn_A 38 VPLAWAFRAA 47 (441)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 4455555443
No 162
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=34.08 E-value=8.5 Score=33.62 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.6
Q ss_pred cCCccccccC
Q 029622 129 AGEQIFPMLG 138 (190)
Q Consensus 129 ~G~~iF~~LG 138 (190)
.|..++..||
T Consensus 135 ~g~Pl~~lLG 144 (393)
T 1wuf_A 135 EKRSLAKMIG 144 (393)
T ss_dssp TTSBHHHHTT
T ss_pred hCCcHHHHhC
Confidence 4555555555
No 163
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=33.67 E-value=31 Score=26.84 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=28.8
Q ss_pred CCCceEEEEeccCcCcchhHHHHHHHHHhh---CCCeEEec
Q 029622 63 GYGSTVNINFCASCSYRGTAITMKRMLETQ---FPGIDVVL 100 (190)
Q Consensus 63 ~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~---yP~i~V~G 100 (190)
..-+...++-|..|. -+.|-|++++|++. ||++.|.-
T Consensus 12 ~~yarA~lEvC~~Ck-L~~~PeIk~FIk~d~~~y~~v~Vky 51 (129)
T 2a2p_A 12 RGLARGRVETCGGCQ-LNRLKEVKAFVTEDIQLYHNLVMKH 51 (129)
T ss_dssp TTCCEEEEEEETTCC-CSTTHHHHHHTTTHHHHBTTEEEEE
T ss_pred cccceEEEEECCCcc-cccchhHHHHHhCchhhcCceeEEE
Confidence 445678899999997 67889999999765 78886543
No 164
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=33.32 E-value=8.9 Score=34.52 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=26.6
Q ss_pred CCccccccCCCchhhhhhhhcCchhHHHHHHHHHHHHHHhhhccccEEEEECCeEeeec
Q 029622 130 GEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDL 188 (190)
Q Consensus 130 G~~iF~~LG~~~P~w~~~~~~NK~~~~~~~fflgN~ie~~L~sTGAFEIylNd~lV~S~ 188 (190)
=.+++.-+|+..|+. .+++|- -+..+.+.|.++|+.|-+.
T Consensus 82 Rr~la~elG~vlP~I--rIrDn~-----------------~L~p~~Y~I~i~gv~va~g 121 (383)
T 4a5p_A 82 RSQFFIDYGVRLPTI--LYRTSN-----------------ELXVDDIVLLINEVRADSF 121 (383)
T ss_dssp HHHHHHHTCCCCCCC--EEEEES-----------------SSCSSEEEEEETTEEEEEE
T ss_pred HHHHHHHcCCCCCce--EEEECc-----------------ccCCcceEEEEcccccccc
Confidence 345666788876665 345552 1467888888888887543
No 165
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=33.09 E-value=15 Score=27.94 Aligned_cols=8 Identities=63% Similarity=1.053 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 029622 34 SASHHHHK 41 (190)
Q Consensus 34 ~~~~~~~~ 41 (190)
+||||||+
T Consensus 4 ~~~~~~~~ 11 (201)
T 2cdn_A 4 SHHHHHHS 11 (201)
T ss_dssp --------
T ss_pred cccccccc
Confidence 45555555
No 166
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=33.08 E-value=19 Score=26.23 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=12.5
Q ss_pred cccCCCceEEEEeccCc
Q 029622 60 GGIGYGSTVNINFCASC 76 (190)
Q Consensus 60 ~~~~~G~tV~i~YC~SC 76 (190)
..+..|.+|.+.|-...
T Consensus 28 ~~~~~gD~V~v~Y~g~~ 44 (113)
T 1hxv_A 28 KKLANGDIAIIDFTGIV 44 (113)
T ss_dssp -CCCSSEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEE
Confidence 35678899999987654
No 167
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=33.06 E-value=8.2 Score=32.88 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=5.2
Q ss_pred HHHHhHhhHHH
Q 029622 110 RLLAKVVPAVQ 120 (190)
Q Consensus 110 ~~Lak~l~~~q 120 (190)
.+++.++..++
T Consensus 137 ei~a~~L~~l~ 147 (404)
T 3i33_A 137 EISSMVLTKMK 147 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455554443
No 168
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=33.03 E-value=8.7 Score=34.01 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=9.3
Q ss_pred hHHHHHHHHHh---hCCCeEEe
Q 029622 81 TAITMKRMLET---QFPGIDVV 99 (190)
Q Consensus 81 ~f~e~k~~L~~---~yP~i~V~ 99 (190)
..+++++.|++ .||--+|.
T Consensus 46 ~a~~~~~~~~~~~~~~~~~~~i 67 (500)
T 3tcm_A 46 HAQRLQEQLKTQPGSLPFDEIL 67 (500)
T ss_dssp HHHHHHHHHHHSTTSSSSSSCE
T ss_pred HHHHHHHHHhhCCCCCCHHHhh
Confidence 34455554432 26765543
No 169
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=32.74 E-value=13 Score=29.57 Aligned_cols=8 Identities=63% Similarity=1.053 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 029622 34 SASHHHHK 41 (190)
Q Consensus 34 ~~~~~~~~ 41 (190)
+||||||+
T Consensus 4 ~~~~~~~~ 11 (201)
T 2j8k_A 4 SHHHHHHS 11 (201)
T ss_dssp --------
T ss_pred cccccccc
Confidence 34555554
No 170
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=32.57 E-value=12 Score=28.12 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=0.0
Q ss_pred CCCCCC
Q 029622 35 ASHHHH 40 (190)
Q Consensus 35 ~~~~~~ 40 (190)
||||||
T Consensus 5 ~~~~~~ 10 (199)
T 2p5s_A 5 HHHHHH 10 (199)
T ss_dssp ------
T ss_pred cccccc
Confidence 344333
No 171
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=32.37 E-value=11 Score=28.97 Aligned_cols=35 Identities=11% Similarity=0.362 Sum_probs=23.9
Q ss_pred EEEeccCcCcchhHHHHHHHHHhhCCCe-EEecccCC
Q 029622 69 NINFCASCSYRGTAITMKRMLETQFPGI-DVVLANYP 104 (190)
Q Consensus 69 ~i~YC~SCGY~~~f~e~k~~L~~~yP~i-~V~G~nYp 104 (190)
+++|-....+...=+|..+ |.++||+- -|+=|-|+
T Consensus 10 ~~~fK~~~s~e~R~~e~~~-ir~kyP~rIPVIvEr~~ 45 (125)
T 3m95_A 10 KFQYKEEHSFEKRKAEGEK-IRRKYPDRVPVIVEKAP 45 (125)
T ss_dssp CCHHHHHSCHHHHHHHHHH-HHHHCTTEEEEEEEECT
T ss_pred eeeecccCCHHHHHHHHHH-HHHHCCCeEEEEEEecC
Confidence 6777777777777777655 56679994 46555665
No 172
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=32.20 E-value=48 Score=26.48 Aligned_cols=10 Identities=0% Similarity=0.488 Sum_probs=5.8
Q ss_pred hCCCeEEecc
Q 029622 92 QFPGIDVVLA 101 (190)
Q Consensus 92 ~yP~i~V~G~ 101 (190)
-|-++++.+.
T Consensus 54 G~~~vEl~~~ 63 (290)
T 2zvr_A 54 GYQAVEIAVR 63 (290)
T ss_dssp TCSEEEEECS
T ss_pred CCCEEEEcCC
Confidence 3666666554
No 173
>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A
Probab=32.14 E-value=9.6 Score=33.61 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=7.4
Q ss_pred hcCCccccccCC
Q 029622 128 VAGEQIFPMLGM 139 (190)
Q Consensus 128 v~G~~iF~~LG~ 139 (190)
..|..++..||=
T Consensus 126 ~~g~Pl~~LLGG 137 (421)
T 4hnl_A 126 LADMPLYQLLGG 137 (421)
T ss_dssp HHTSBHHHHTTC
T ss_pred HhCCCHHHhcCC
Confidence 346667777753
No 174
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=32.08 E-value=69 Score=27.42 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=31.8
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHh
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVV 116 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l 116 (190)
+.+|.++..=+....++++.+..++++|+++|+-+.++ +..+..|+.
T Consensus 29 ~~tlt~w~~~~~~~~~~~~~~~F~~~~pgi~V~~~~~~---~~~~~~kl~ 75 (458)
T 3uor_A 29 KTTVRFWAMGKEAEVVAELVADFEKQNPTIHVDVQNIP---MTAAHEKLL 75 (458)
T ss_dssp CEEEEEEECTHHHHHHHHHHHHHHTTCTTEEEEEEECC---HHHHHHHHH
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHHHCCCcEEEEEEcC---hHHHHHHHH
Confidence 33444454433456788888899999999999988874 445555444
No 175
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=32.01 E-value=9.7 Score=37.28 Aligned_cols=8 Identities=50% Similarity=0.974 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 029622 34 SASHHHHK 41 (190)
Q Consensus 34 ~~~~~~~~ 41 (190)
||||||||
T Consensus 3 ~~~~~~~~ 10 (800)
T 3oc3_A 3 HHHHHHHH 10 (800)
T ss_dssp --------
T ss_pred cccccccc
Confidence 44444444
No 176
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=31.97 E-value=12 Score=32.85 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 029622 35 ASHHHHKPPIPSENLTPDFPSQ 56 (190)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ 56 (190)
||||||..-.|..+.|.+-|..
T Consensus 2 ~~~~~~~~~~~~~~~p~~n~~~ 23 (320)
T 3o5c_A 2 HHHHHHGGAEPIEVITPAKITE 23 (320)
T ss_dssp ---------CCSCCCCCCCCSC
T ss_pred CccccCCCCCccccCCCCCCCC
Confidence 4444444345555555555544
No 177
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=31.57 E-value=24 Score=28.34 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=7.8
Q ss_pred HHHHHHHhhCCC
Q 029622 84 TMKRMLETQFPG 95 (190)
Q Consensus 84 e~k~~L~~~yP~ 95 (190)
++.+.|.+.+|+
T Consensus 34 TL~~~L~~~~~~ 45 (197)
T 3ney_A 34 HIKNALLSQNPE 45 (197)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhhCCc
Confidence 456667777774
No 178
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=31.19 E-value=64 Score=24.88 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=37.4
Q ss_pred CceEEEEeccCcCcchhHHHHH---HHHHhhCC-CeEEecccCCC-ChHHHHHHhHh
Q 029622 65 GSTVNINFCASCSYRGTAITMK---RMLETQFP-GIDVVLANYPP-PLPKRLLAKVV 116 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k---~~L~~~yP-~i~V~G~nYpP-p~~k~~Lak~l 116 (190)
.++|...+-..|+|=+.|+..- +.|.++|| +++++-.+.|- .+.-...|++.
T Consensus 22 ~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~aa~a~ 78 (191)
T 3l9s_A 22 EPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAW 78 (191)
T ss_dssp SSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecccccccCHHHHHHH
Confidence 6799999999999999998763 68899999 47776666664 23334444443
No 179
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=30.92 E-value=10 Score=35.21 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=27.4
Q ss_pred EEeccCcCcchhHHHHHHHHHhh-------CCCe--E-EecccCCCChHHHHHHhHhh
Q 029622 70 INFCASCSYRGTAITMKRMLETQ-------FPGI--D-VVLANYPPPLPKRLLAKVVP 117 (190)
Q Consensus 70 i~YC~SCGY~~~f~e~k~~L~~~-------yP~i--~-V~G~nYpPp~~k~~Lak~l~ 117 (190)
|..-.+-+|+.+-.+-..+|.+- ||.- . +=-.--.+...|+.|.+++.
T Consensus 32 ~~~~~~~~~~~a~~~~~~~L~dIQG~IL~g~~k~~~~~lFf~i~Da~~~R~~L~~l~~ 89 (493)
T 4g2c_A 32 VDLSTTLSWKSATGEAATMLDELQPNILKAHVRDRLTVLFLGFGDAAEARTFLNGLSG 89 (493)
T ss_dssp CCTTSCBCTTTCCHHHHHHHHHSCTTSSSCCCCSEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred eeccCcccccccCCccccchhhcchhhhcCCCCceeEEEEEEecCHHHHHHHHHHhhh
Confidence 33345667888888877777654 2220 0 11111256677888877654
No 180
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=30.75 E-value=87 Score=24.09 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhH
Q 029622 78 YRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~ 115 (190)
+.+-..++.+.+.++. +++++-..++ |.+.+..+
T Consensus 63 ~~G~~~dl~~~i~~~~-g~~v~~~~~~---~~~~~~~l 96 (272)
T 2pvu_A 63 IVGFDVDLLDAVMKAA-GLDYELKNIG---WDPLFASL 96 (272)
T ss_dssp EESHHHHHHHHHHHHH-TCCEEEEECC---HHHHHHHH
T ss_pred EEEEHHHHHHHHHHHh-CCceEEEECC---HHHHHHHH
Confidence 3566778888888776 7777665553 77666544
No 181
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=30.72 E-value=10 Score=33.30 Aligned_cols=10 Identities=0% Similarity=0.504 Sum_probs=5.0
Q ss_pred HHHHHHHhhC
Q 029622 84 TMKRMLETQF 93 (190)
Q Consensus 84 e~k~~L~~~y 93 (190)
.++++|.+.|
T Consensus 41 ~l~~~I~~~y 50 (380)
T 3c3r_A 41 PLVKFIQQTY 50 (380)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 3455555554
No 182
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=30.70 E-value=10 Score=34.13 Aligned_cols=16 Identities=6% Similarity=0.438 Sum_probs=7.6
Q ss_pred HHHHHHHHhhC----CCeEE
Q 029622 83 ITMKRMLETQF----PGIDV 98 (190)
Q Consensus 83 ~e~k~~L~~~y----P~i~V 98 (190)
..+++.+.++| |.++|
T Consensus 85 ~~iRr~~a~elG~~lP~IrI 104 (389)
T 3a5i_A 85 RSIRKKFAQDMGFLPPVVHI 104 (389)
T ss_dssp HHHHHHHHHHTSSCCCCEEE
T ss_pred HHHHHHHHHHcCCCCCceEE
Confidence 33444444443 55554
No 183
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=30.49 E-value=11 Score=32.90 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=17.8
Q ss_pred CCCccccccCCCceEEEEeccCcC
Q 029622 54 PSQKIVGGIGYGSTVNINFCASCS 77 (190)
Q Consensus 54 ~~~~~~~~~~~G~tV~i~YC~SCG 77 (190)
|+.++...+..|.+|+|+ |.+|.
T Consensus 27 ~~~~Pvl~V~~Gd~V~~e-T~d~~ 49 (297)
T 2f4l_A 27 ANMAPVEEVYPGEQVVFE-TLDAL 49 (297)
T ss_dssp TTCCCSCEECTTCEEEEE-ECCTT
T ss_pred CCCCceEEECCCCEEEEE-ECcCC
Confidence 445577788899999999 55774
No 184
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=30.38 E-value=20 Score=24.99 Aligned_cols=7 Identities=57% Similarity=1.099 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 029622 35 ASHHHHK 41 (190)
Q Consensus 35 ~~~~~~~ 41 (190)
||||||+
T Consensus 3 ~~~~~~~ 9 (86)
T 2krk_A 3 HHHHHHS 9 (86)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 3334333
No 185
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=30.31 E-value=11 Score=30.78 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=0.0
Q ss_pred CCCCCC
Q 029622 35 ASHHHH 40 (190)
Q Consensus 35 ~~~~~~ 40 (190)
||||||
T Consensus 3 ~~~~~~ 8 (192)
T 3rlb_A 3 HHHHHH 8 (192)
T ss_dssp ------
T ss_pred ccchhh
Confidence 333333
No 186
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=30.21 E-value=19 Score=25.44 Aligned_cols=7 Identities=0% Similarity=-0.268 Sum_probs=3.6
Q ss_pred EEEEecc
Q 029622 68 VNINFCA 74 (190)
Q Consensus 68 V~i~YC~ 74 (190)
..|+|+.
T Consensus 45 Y~Ve~~~ 51 (112)
T 1bpv_A 45 YIVEKRD 51 (112)
T ss_dssp CEEEEEE
T ss_pred EEEEEEE
Confidence 4555554
No 187
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=30.07 E-value=46 Score=22.69 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=17.3
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhC
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQF 93 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~y 93 (190)
.|.+..+..-. ..+-.++|+.|+++.
T Consensus 19 ~g~~~~l~v~~----~~TV~~LK~~I~~~~ 44 (84)
T 2kk8_A 19 NGSSFELEVDY----RDTLLVVKQKIERSQ 44 (84)
T ss_dssp TSCEEEEEECT----TSBHHHHHHHHHHHH
T ss_pred CCcEEEEEECC----CChHHHHHHHHHHHH
Confidence 35566555333 457789999998874
No 188
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=29.91 E-value=11 Score=31.16 Aligned_cols=6 Identities=17% Similarity=0.833 Sum_probs=2.7
Q ss_pred CceEEE
Q 029622 65 GSTVNI 70 (190)
Q Consensus 65 G~tV~i 70 (190)
|..|++
T Consensus 54 GA~VtV 59 (223)
T 3dfz_A 54 GAAITV 59 (223)
T ss_dssp CCCEEE
T ss_pred CCEEEE
Confidence 444444
No 189
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=29.75 E-value=65 Score=24.49 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=15.0
Q ss_pred cCCCceEEEEe--ccCcCcchhHHH
Q 029622 62 IGYGSTVNINF--CASCSYRGTAIT 84 (190)
Q Consensus 62 ~~~G~tV~i~Y--C~SCGY~~~f~e 84 (190)
+..|.++.|.- .-+-||+-.+..
T Consensus 39 v~~Ge~~~I~L~~NPTTGY~W~~~~ 63 (132)
T 2wgn_B 39 LTQGQELVLTLPSNPTTGFRWELRN 63 (132)
T ss_dssp ECTTCEEEEEECCCTTTSCEEEEEE
T ss_pred EcCCCEEEEEeCCCCCCCeEEEEec
Confidence 45676655554 467789887755
No 190
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=29.62 E-value=19 Score=26.61 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=11.8
Q ss_pred CCCceEEEEeccCcCcchh
Q 029622 63 GYGSTVNINFCASCSYRGT 81 (190)
Q Consensus 63 ~~G~tV~i~YC~SCGY~~~ 81 (190)
..|-+|.|+.-...-|++.
T Consensus 24 ~igk~V~V~Lk~G~~~~G~ 42 (105)
T 4emh_A 24 TQGRPILVELKNGETFNGH 42 (105)
T ss_dssp --CCEEEEEETTSCEEEEE
T ss_pred hCCCEEEEEECCCCEEEEE
Confidence 4567788887776656554
No 191
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=29.54 E-value=14 Score=29.34 Aligned_cols=11 Identities=18% Similarity=0.036 Sum_probs=5.4
Q ss_pred HHHHHHHHHhh
Q 029622 82 AITMKRMLETQ 92 (190)
Q Consensus 82 f~e~k~~L~~~ 92 (190)
+.++.+.|.+.
T Consensus 47 ~~~~~~~l~~G 57 (280)
T 1zbm_A 47 IETLNRKAFNA 57 (280)
T ss_dssp HHHHHHHGGGT
T ss_pred HHHHHHHHHcC
Confidence 45555554443
No 192
>2vmh_A GH95CBM51, fibronectin type III domain protein; carbohydrate-binding module, sugar-binding protein, galactose, fucosidase; 1.50A {Clostridium perfringens} SCOP: b.18.1.33 PDB: 2vmi_A 2vmg_A*
Probab=29.30 E-value=33 Score=26.61 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=15.4
Q ss_pred ccccEEEEECCeEeeecC
Q 029622 172 SSGAFEVYCNDDLVSDLS 189 (190)
Q Consensus 172 sTGAFEIylNd~lV~S~~ 189 (190)
.+-.||||.||+++|+..
T Consensus 89 gsv~F~V~~Dg~~l~~S~ 106 (151)
T 2vmh_A 89 ASISFEVYLDNEKVFDSG 106 (151)
T ss_dssp CEEEEEEEETTEEEEECC
T ss_pred ccEEEEEEcCCeEEEEcc
Confidence 567899999999999753
No 193
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=29.22 E-value=12 Score=38.04 Aligned_cols=18 Identities=6% Similarity=-0.307 Sum_probs=11.8
Q ss_pred HHHHHHHHhhCCCeEEec
Q 029622 83 ITMKRMLETQFPGIDVVL 100 (190)
Q Consensus 83 ~e~k~~L~~~yP~i~V~G 100 (190)
+.+.+.+++.=.|..+-|
T Consensus 83 ~~I~~~a~~~~iD~V~pg 100 (1165)
T 2qf7_A 83 DEVIRVAKLSGADAIHPG 100 (1165)
T ss_dssp HHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHHhCCCEEEEC
Confidence 556666666667766655
No 194
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=29.17 E-value=12 Score=30.67 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHhh-CCCe---EEecccCCCChHHHHHHhHhhHHHHHHHhHhhcCCc
Q 029622 79 RGTAITMKRMLETQ-FPGI---DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQ 132 (190)
Q Consensus 79 ~~~f~e~k~~L~~~-yP~i---~V~G~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~ 132 (190)
++-++|+|+++.+= .=|+ .|.|+ ++..++.++++-+=+=+|+ ++.|.+
T Consensus 22 ~~mlkeFKeFi~RGNViDLAVgVIIGa-----AF~~IVtSlV~dIImPlIg-l~Gg~d 73 (174)
T 2oar_A 22 KHMLKGFKEFLARGNIVDLAVAVVIGT-----AFTALVTKFTDSIITPLIN-RIGVNA 73 (174)
T ss_dssp --CHHHHHHHHHSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHCCCC
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHH-hhCCCC
Confidence 55677777766321 1111 25565 3566777777666666666 344444
No 195
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=29.04 E-value=12 Score=27.59 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 029622 82 AITMKRMLE 90 (190)
Q Consensus 82 f~e~k~~L~ 90 (190)
|+|+++.+.
T Consensus 46 ~~Ef~~~l~ 54 (143)
T 3a4u_B 46 QEHIMEHLE 54 (143)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 344444443
No 196
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=28.99 E-value=45 Score=27.34 Aligned_cols=38 Identities=8% Similarity=-0.024 Sum_probs=19.9
Q ss_pred CCceEEEEeccCc----CcchhHHHHHHHHHhh---CCCeEEecc
Q 029622 64 YGSTVNINFCASC----SYRGTAITMKRMLETQ---FPGIDVVLA 101 (190)
Q Consensus 64 ~G~tV~i~YC~SC----GY~~~f~e~k~~L~~~---yP~i~V~G~ 101 (190)
.+.+++|--+... ....+.+.+.+++++. =+++.|-.|
T Consensus 17 ~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE 61 (283)
T 3hkx_A 17 RGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPE 61 (283)
T ss_dssp TTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCT
T ss_pred cCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCC
Confidence 3444554443322 3466777777777654 245554444
No 197
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.95 E-value=39 Score=29.60 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=18.6
Q ss_pred cchhHHHHHHHHHhhCCCeEEecccC
Q 029622 78 YRGTAITMKRMLETQFPGIDVVLANY 103 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V~G~nY 103 (190)
....++++.+..+++ |+++|+-..+
T Consensus 30 ~~~~~~~~i~~Fe~~-~gI~V~~~~~ 54 (471)
T 3mq9_A 30 GYNGLAEVGKKFEKD-TGIKVTVEHP 54 (471)
T ss_dssp CHHHHHHHHHHHHHH-HCCCEEEECC
T ss_pred ccHHHHHHHHHHhhC-cCCEEEEEec
Confidence 345677777777888 8998887653
No 198
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=28.54 E-value=33 Score=23.13 Aligned_cols=8 Identities=63% Similarity=1.037 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 029622 33 KSASHHHH 40 (190)
Q Consensus 33 ~~~~~~~~ 40 (190)
.+.|||||
T Consensus 108 ~~~~~~~~ 115 (116)
T 2kj5_A 108 KLEHHHHH 115 (116)
T ss_dssp CCCSSCCC
T ss_pred hhhhcccC
Confidence 34444433
No 199
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=28.39 E-value=1.5e+02 Score=21.94 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=34.0
Q ss_pred cccCCCceEEEEeccCcCcchhHHHH-HHHHHhhCC---CeEEecccCCCC
Q 029622 60 GGIGYGSTVNINFCASCSYRGTAITM-KRMLETQFP---GIDVVLANYPPP 106 (190)
Q Consensus 60 ~~~~~G~tV~i~YC~SCGY~~~f~e~-k~~L~~~yP---~i~V~G~nYpPp 106 (190)
|..+.-.+|.+.+=..|.|=..+++. .+.|.++|+ +++++-..+|..
T Consensus 7 G~~~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~ 57 (186)
T 3bci_A 7 SSKNGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFL 57 (186)
T ss_dssp ----CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCS
T ss_pred CCCCCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecCcC
Confidence 33344468888888999988888764 578989996 588888888754
No 200
>4f27_A Clumping factor B; DEV-IGG fold, protein-peptide complex, fibronogen, cell SURF adhesion-blood clotting complex; 1.92A {Staphylococcus aureus} PDB: 4f20_A 4f24_A 4f1z_A 3au0_A 3at0_A 3asw_A
Probab=28.37 E-value=12 Score=31.67 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=0.0
Q ss_pred CCCCCC
Q 029622 35 ASHHHH 40 (190)
Q Consensus 35 ~~~~~~ 40 (190)
||||||
T Consensus 5 ~~~~~~ 10 (363)
T 4f27_A 5 HHHHHH 10 (363)
T ss_dssp ------
T ss_pred cccccc
Confidence 444443
No 201
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=28.35 E-value=33 Score=23.53 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=13.1
Q ss_pred CCCCC-CCCc-cccccCCCceEEEEe
Q 029622 49 LTPDF-PSQK-IVGGIGYGSTVNINF 72 (190)
Q Consensus 49 ~~~~~-~~~~-~~~~~~~G~tV~i~Y 72 (190)
+-.|| .++. ..=.+..|..|.|.-
T Consensus 23 Alydy~~a~~~~eLsf~~GDiI~V~~ 48 (83)
T 2ke9_A 23 ALKDFWNLHDPTALNVRAGDVITVLE 48 (83)
T ss_dssp ESSCBCCCSCTTBCCBCTTCEEEESC
T ss_pred EccccCCCCCCCcccccCCCEEEEEE
Confidence 55677 3333 223345677777754
No 202
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=28.34 E-value=25 Score=25.01 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=23.5
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
+.|...|=..|++=+.+...-+.+.++|+++.+..-+..
T Consensus 39 ~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d 77 (125)
T 1r26_A 39 LTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDAD 77 (125)
T ss_dssp CEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETT
T ss_pred EEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 455555544566555555544556677898876665544
No 203
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=28.15 E-value=12 Score=33.31 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhhCCCeEE
Q 029622 80 GTAITMKRMLETQFPGIDV 98 (190)
Q Consensus 80 ~~f~e~k~~L~~~yP~i~V 98 (190)
+..+++++.|+++ |++|
T Consensus 81 ~EHd~f~~~Lr~~--GveV 97 (433)
T 4e4j_A 81 EEHKGFVKILQNN--GIKV 97 (433)
T ss_dssp HHHHHHHHHHHTT--TCEE
T ss_pred HHHHHHHHHHHHC--CCEE
Confidence 4567788888887 7765
No 204
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=28.12 E-value=12 Score=33.69 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=13.9
Q ss_pred CCCceEEEEeccCcCcc-hhHH
Q 029622 63 GYGSTVNINFCASCSYR-GTAI 83 (190)
Q Consensus 63 ~~G~tV~i~YC~SCGY~-~~f~ 83 (190)
..|-+|.|+-+...+|. ..|+
T Consensus 52 ~~G~~V~VE~gA~a~f~D~~Y~ 73 (394)
T 2qrj_A 52 AKGFKIYVEDSPQSTFNINEYR 73 (394)
T ss_dssp HTTCEEEEECCSSCSSCHHHHH
T ss_pred hCCCEEEEeCCCCCCCCHHHHH
Confidence 45788999988755554 3343
No 205
>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}
Probab=28.10 E-value=16 Score=26.58 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=11.9
Q ss_pred hhhhhccCCCCCCCCC
Q 029622 18 SDLLNLFTPPPPPPPK 33 (190)
Q Consensus 18 ~d~~~~f~~~~~~~~~ 33 (190)
.|+++.+++..++|.+
T Consensus 53 ~DL~~W~~g~~~~p~~ 68 (94)
T 2jr5_A 53 PDLFAWVMGHGRCENL 68 (94)
T ss_dssp HHHHHHHHTCCCCSCH
T ss_pred HHHHHHHhCCCCCCCH
Confidence 4789988887766654
No 206
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=28.03 E-value=12 Score=33.84 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=5.3
Q ss_pred cEEEEECCe
Q 029622 175 AFEVYCNDD 183 (190)
Q Consensus 175 AFEIylNd~ 183 (190)
+||++.++.
T Consensus 170 s~~~wtG~~ 178 (467)
T 2axq_A 170 SFLSYCGGL 178 (467)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeccc
Confidence 666666543
No 207
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=28.01 E-value=70 Score=24.01 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=12.5
Q ss_pred CCCceEEEEeccCcCcchhHHHHHH
Q 029622 63 GYGSTVNINFCASCSYRGTAITMKR 87 (190)
Q Consensus 63 ~~G~tV~i~YC~SCGY~~~f~e~k~ 87 (190)
..|.+|.+.+=..- .+..++.+++
T Consensus 29 ~~G~~isLnf~da~-i~~vl~~la~ 52 (128)
T 4ar0_A 29 FTGRKISLDFQDVE-IRTILQILAK 52 (128)
T ss_dssp CSSCEEEEEEEEEE-HHHHHHHHHH
T ss_pred CCCCceEEEEeCCC-HHHHHHHHHH
Confidence 35777777754432 3444444444
No 208
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=28.01 E-value=39 Score=23.52 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=18.8
Q ss_pred CCCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEe
Q 029622 63 GYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVV 99 (190)
Q Consensus 63 ~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~ 99 (190)
....+|++..=..|.|=.....+=+.+.-.|-.++|.
T Consensus 13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~ 49 (99)
T 3qmx_A 13 AVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCID 49 (99)
T ss_dssp CCCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECT
T ss_pred cCCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcC
Confidence 3445677766666666555444433333334444443
No 209
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=27.99 E-value=1.5e+02 Score=23.02 Aligned_cols=9 Identities=0% Similarity=0.220 Sum_probs=5.1
Q ss_pred HHHHHHHHh
Q 029622 83 ITMKRMLET 91 (190)
Q Consensus 83 ~e~k~~L~~ 91 (190)
++++++|++
T Consensus 38 ~DFk~lL~~ 46 (152)
T 1rw2_A 38 ENFRVLVKQ 46 (152)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHc
Confidence 555666654
No 210
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=27.84 E-value=77 Score=22.24 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=12.1
Q ss_pred cchhHHHHHHHHHhhC
Q 029622 78 YRGTAITMKRMLETQF 93 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~y 93 (190)
-..+-.++|+.|+++.
T Consensus 40 ~~~TV~~LK~~I~~~~ 55 (100)
T 1yqb_A 40 DTCTIQQLKEEISQRF 55 (100)
T ss_dssp TTCBHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 3467789999998864
No 211
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=27.80 E-value=20 Score=31.35 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=15.0
Q ss_pred CCCceEEEEeccCcCcchhHHHHHHHHHh
Q 029622 63 GYGSTVNINFCASCSYRGTAITMKRMLET 91 (190)
Q Consensus 63 ~~G~tV~i~YC~SCGY~~~f~e~k~~L~~ 91 (190)
|..+.+.|.|... |+.++..++..+++
T Consensus 40 ~~~~~~~i~y~~~--y~~~~~~~r~~~~~ 66 (349)
T 3q7a_A 40 GPNPVVPIMYSEE--YKDAMDYFRAIAAK 66 (349)
T ss_dssp CSSCSSCBCCCHH--HHHHHHHHHHHHHT
T ss_pred CCCCeeeeeeCHH--HHHHHHHHHHHHHh
Confidence 3456777766553 45555555554443
No 212
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=27.70 E-value=21 Score=29.72 Aligned_cols=9 Identities=0% Similarity=0.080 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 029622 81 TAITMKRML 89 (190)
Q Consensus 81 ~f~e~k~~L 89 (190)
.|+++++..
T Consensus 29 ~y~~~~~~~ 37 (235)
T 1qwz_A 29 NYEKLQQKF 37 (235)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444544443
No 213
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=27.68 E-value=13 Score=29.21 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 029622 35 ASHHHHKPP 43 (190)
Q Consensus 35 ~~~~~~~~~ 43 (190)
||||||||+
T Consensus 4 ~~~~~~~~~ 12 (188)
T 2r5o_A 4 HHHHHHHHI 12 (188)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 333444433
No 214
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=27.64 E-value=1.9e+02 Score=21.49 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=34.1
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCC-eEEecccCCCChHHHHHHhHh
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPG-IDVVLANYPPPLPKRLLAKVV 116 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~-i~V~G~nYpPp~~k~~Lak~l 116 (190)
.++|...+-..|+|=+.++..-+.+.++||+ +++.--+.+-.+.-...+++.
T Consensus 26 ~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~s~~aa~a~ 78 (195)
T 3hd5_A 26 KIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAFNAGMKPLQQLY 78 (195)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCSSGGGHHHHHHH
T ss_pred CeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecccCcchHHHHHHH
Confidence 3578888888899999988888888999996 554433333233333334333
No 215
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=27.55 E-value=16 Score=27.61 Aligned_cols=8 Identities=63% Similarity=1.053 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 029622 34 SASHHHHK 41 (190)
Q Consensus 34 ~~~~~~~~ 41 (190)
+||||||.
T Consensus 4 ~~~~~~~~ 11 (201)
T 2hup_A 4 SHHHHHHS 11 (201)
T ss_dssp --------
T ss_pred cccccccc
Confidence 34544444
No 216
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=27.44 E-value=72 Score=26.80 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=17.8
Q ss_pred EEEEeccCcC---cchhHHHHHHHHHhhCCCeEEecccC
Q 029622 68 VNINFCASCS---YRGTAITMKRMLETQFPGIDVVLANY 103 (190)
Q Consensus 68 V~i~YC~SCG---Y~~~f~e~k~~L~~~yP~i~V~G~nY 103 (190)
+.|.+...-| -++.++++++.|++.--++++.-..+
T Consensus 27 i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~ 65 (337)
T 2qv7_A 27 ARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEK 65 (337)
T ss_dssp EEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS
T ss_pred EEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4455554333 12445666666666544444443333
No 217
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=27.38 E-value=28 Score=28.07 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=3.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 029622 35 ASHHHHKPPIPSENLTP 51 (190)
Q Consensus 35 ~~~~~~~~~~~~~~~~~ 51 (190)
||||||+.++-.....+
T Consensus 1 ~~~~~~~~~~~~~~~~m 17 (277)
T 2rhc_B 1 HHHHHHSSGLVPRGSHM 17 (277)
T ss_dssp ---------CCCTTTTT
T ss_pred CCccccCCCCCcccccc
Confidence 34444443332333444
No 218
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=27.26 E-value=1.3e+02 Score=22.31 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=31.8
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCC
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp 106 (190)
.++|...+-..|.|=..++..-+.+.++||+ +|+-..+|.+
T Consensus 26 ~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~ 66 (192)
T 3h93_A 26 KIEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPAL 66 (192)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred CCEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEEEEehh
Confidence 3588888999999999998888889999997 4444455543
No 219
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=27.21 E-value=13 Score=31.90 Aligned_cols=7 Identities=57% Similarity=1.123 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 029622 35 ASHHHHK 41 (190)
Q Consensus 35 ~~~~~~~ 41 (190)
|||||||
T Consensus 4 ~~~~~~~ 10 (478)
T 2ivd_A 4 HHHHHHH 10 (478)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333333
No 220
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=27.20 E-value=21 Score=27.16 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHhhCCCeE
Q 029622 79 RGTAITMKRMLETQFPGID 97 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP~i~ 97 (190)
++--.|+++.-++.-+++.
T Consensus 25 ~RL~kEl~~l~~~~~~gi~ 43 (136)
T 2a7l_A 25 KRLQKELLALQNDPPPGMT 43 (136)
T ss_dssp HHHHHHHHHHHHSCCTTCC
T ss_pred HHHHHHHHHHHhCCCCCEE
Confidence 5666777776655444443
No 221
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=27.16 E-value=28 Score=25.92 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=9.4
Q ss_pred CCCceEEEEeccC
Q 029622 63 GYGSTVNINFCAS 75 (190)
Q Consensus 63 ~~G~tV~i~YC~S 75 (190)
..|.+|++.|-..
T Consensus 44 ~~gd~V~v~Y~g~ 56 (133)
T 2y78_A 44 RAGQTVSVHYTGW 56 (133)
T ss_dssp CTTSEEEEEEEEE
T ss_pred CCCCEEEEEEEEE
Confidence 4577888888654
No 222
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=27.13 E-value=72 Score=25.46 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=10.6
Q ss_pred chhHHHHHHHHHhh
Q 029622 79 RGTAITMKRMLETQ 92 (190)
Q Consensus 79 ~~~f~e~k~~L~~~ 92 (190)
+..|..|.++|..+
T Consensus 61 ~~gF~~L~~YI~G~ 74 (195)
T 2gov_A 61 REAMPKIMKYVGGT 74 (195)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccC
Confidence 44788999998754
No 223
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=27.12 E-value=36 Score=26.56 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=16.3
Q ss_pred HHHHHHHHhhCCCeEEeccc
Q 029622 83 ITMKRMLETQFPGIDVVLAN 102 (190)
Q Consensus 83 ~e~k~~L~~~yP~i~V~G~n 102 (190)
+..+++|+++||+.+|+=+|
T Consensus 113 ~~t~~iLk~~ypdy~It~s~ 132 (135)
T 2nmm_A 113 AISTEKIKAKYPDYEVTWAN 132 (135)
T ss_dssp HHHHHHHHHHCTTSEEEEC-
T ss_pred HHHHHHHHHHCCCcEEEeeC
Confidence 67799999999999987554
No 224
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=27.12 E-value=12 Score=27.65 Aligned_cols=10 Identities=30% Similarity=0.757 Sum_probs=6.1
Q ss_pred cccccCCCce
Q 029622 58 IVGGIGYGST 67 (190)
Q Consensus 58 ~~~~~~~G~t 67 (190)
..|+.|.|-+
T Consensus 12 l~G~~GsGKS 21 (168)
T 1zuh_A 12 LIGFMGSGKS 21 (168)
T ss_dssp EESCTTSSHH
T ss_pred EECCCCCCHH
Confidence 3466777753
No 225
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=26.94 E-value=30 Score=30.88 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=14.2
Q ss_pred CcchhHHHHHHHHHhhCC
Q 029622 77 SYRGTAITMKRMLETQFP 94 (190)
Q Consensus 77 GY~~~f~e~k~~L~~~yP 94 (190)
-++..|.++++.|.+..+
T Consensus 35 ~f~~~~~~~~~~l~~~l~ 52 (395)
T 2ihi_A 35 FFRNMYDKYRDAFLSHLN 52 (395)
T ss_dssp CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 368889999988887754
No 226
>2lwx_A Zuotin; J-protein, molecular chaperone, pleiotropic drug resistance, chaperone; NMR {Saccharomyces cerevisiae}
Probab=26.88 E-value=13 Score=28.19 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=8.8
Q ss_pred chhHHHHHHHHHhhCCC
Q 029622 79 RGTAITMKRMLETQFPG 95 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP~ 95 (190)
|.+-..=||.|+..--|
T Consensus 23 k~a~kknKRvIR~svKD 39 (108)
T 2lwx_A 23 KAAKKKNKRAIRNSAKE 39 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccch
Confidence 44444556666655444
No 227
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.85 E-value=20 Score=25.04 Aligned_cols=21 Identities=0% Similarity=-0.031 Sum_probs=12.9
Q ss_pred EEEeccCcCcchhHHHHHHHH
Q 029622 69 NINFCASCSYRGTAITMKRML 89 (190)
Q Consensus 69 ~i~YC~SCGY~~~f~e~k~~L 89 (190)
.=+-+--+....+|+++++.|
T Consensus 20 erER~Rm~~lN~aF~~LR~~V 40 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELV 40 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 333444455677888887764
No 228
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=26.81 E-value=14 Score=29.74 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=3.1
Q ss_pred EEEecc
Q 029622 69 NINFCA 74 (190)
Q Consensus 69 ~i~YC~ 74 (190)
+|.||+
T Consensus 35 ~i~~~N 40 (332)
T 2wkq_A 35 PIIFAS 40 (332)
T ss_dssp CEEEEC
T ss_pred CEEEee
Confidence 455554
No 229
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=26.68 E-value=85 Score=26.31 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=25.3
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC--CChHHHHHH
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP--PPLPKRLLA 113 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp--Pp~~k~~La 113 (190)
.+|+|-|-..+ ...++..++.++++ |++|+-..+. +.+...+.+
T Consensus 39 ~~i~IG~~~~~--~~~~~~~~~~~~~~--G~~Ve~~~f~~~~~~~~AL~~ 84 (295)
T 1p99_A 39 KKVTIGVASND--TKAWEKVKELAKKD--DIDVEIKHFSDYNLPNKALND 84 (295)
T ss_dssp -CEEEEESSSC--CHHHHHHHHHHGGG--TCCEEEEECSSTTSHHHHHHT
T ss_pred CeEEEEEeCCc--HHHHHHHHHHHHHc--CCeEEEEEeCChHHHHHHHHc
Confidence 36888887222 24455567777777 7776655554 334444444
No 230
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=26.64 E-value=14 Score=32.00 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=16.4
Q ss_pred chhHHHHHHHHH-hhCCCeEEecccCCCChHHHHHHhHh
Q 029622 79 RGTAITMKRMLE-TQFPGIDVVLANYPPPLPKRLLAKVV 116 (190)
Q Consensus 79 ~~~f~e~k~~L~-~~yP~i~V~G~nYpPp~~k~~Lak~l 116 (190)
....+-++.+++ .=|=-++ +...|-- -+.+++++
T Consensus 60 ~~~~~~l~~Al~~~Gi~~iD-TA~~Yg~---E~~vG~al 94 (344)
T 2bgs_A 60 SDTAHSVRTAITEAGYRHVD-TAAEYGV---EKEVGKGL 94 (344)
T ss_dssp GGHHHHHHHHHHTTCCCEEE-CCGGGTC---HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEE-CCCccCC---HHHHHHHH
Confidence 344555566666 3232222 4556651 45555554
No 231
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=26.56 E-value=25 Score=26.23 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=4.4
Q ss_pred CCCCCCCCCC
Q 029622 35 ASHHHHKPPI 44 (190)
Q Consensus 35 ~~~~~~~~~~ 44 (190)
||||||+|++
T Consensus 3 ~~~~~~~~~~ 12 (149)
T 2kjq_A 3 HHHHHHSHMD 12 (149)
T ss_dssp CCCCCCCCCC
T ss_pred cccccccCCC
Confidence 4444444443
No 232
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=26.55 E-value=78 Score=23.40 Aligned_cols=31 Identities=13% Similarity=0.013 Sum_probs=20.3
Q ss_pred ceEEEEeccCcCcchhHHHHHHHH---HhhCCCeE
Q 029622 66 STVNINFCASCSYRGTAITMKRML---ETQFPGID 97 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L---~~~yP~i~ 97 (190)
.++...+-..-| +..|++.-+.+ ..+.||..
T Consensus 24 i~via~~~V~pg-~~~f~~~~~~~~~~~~~~pGfi 57 (128)
T 3kg0_A 24 VTFVNRFTVHGA-PAEFESVFARTAAFFARQPGFV 57 (128)
T ss_dssp EEEEEEEEECSC-HHHHHHHHHHHHHHHHTSTTEE
T ss_pred EEEEEEEEeCCC-HHHHHHHHHHHHHHHhcCCCcc
Confidence 466667777778 88887764443 34578863
No 233
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=26.52 E-value=22 Score=29.87 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=18.8
Q ss_pred CCCCCCCCccccccCCCceEEEEeccCc--CcchhHHHHHHHHHhh---CCC--eEEecccCCCChHHHHH
Q 029622 49 LTPDFPSQKIVGGIGYGSTVNINFCASC--SYRGTAITMKRMLETQ---FPG--IDVVLANYPPPLPKRLL 112 (190)
Q Consensus 49 ~~~~~~~~~~~~~~~~G~tV~i~YC~SC--GY~~~f~e~k~~L~~~---yP~--i~V~G~nYpPp~~k~~L 112 (190)
-++++|+|.+- .+. +++.-+.+- --+...+.+.+.|++. -+. +-+.|..=|-+.++.+.
T Consensus 10 ~~~~~~~~~~~---~~~--m~i~v~~~~~~l~~~~A~~i~~~i~~ai~~~~~~~l~LsgGstP~~~y~~L~ 75 (268)
T 3ico_A 10 GTLEAQTQGPG---SMS--SSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLS 75 (268)
T ss_dssp -------------------CEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHH
T ss_pred cceeecccCCC---ccc--cceEecCCcchhhhhhcchhhhHhHHHHHhcCceEEEEecCCchhHHHHHHH
Confidence 57888876543 233 344444432 1233333343344331 233 44677764444444443
No 234
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=26.52 E-value=14 Score=34.72 Aligned_cols=6 Identities=17% Similarity=-0.020 Sum_probs=2.8
Q ss_pred HHHHHH
Q 029622 82 AITMKR 87 (190)
Q Consensus 82 f~e~k~ 87 (190)
.|++|+
T Consensus 76 ~E~~K~ 81 (591)
T 3b0g_A 76 QEKVKI 81 (591)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 445444
No 235
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=26.51 E-value=71 Score=28.27 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=15.4
Q ss_pred CcchhHHHHHHHHHhhCCC
Q 029622 77 SYRGTAITMKRMLETQFPG 95 (190)
Q Consensus 77 GY~~~f~e~k~~L~~~yP~ 95 (190)
.+...|.++++.|.+..+.
T Consensus 27 ~f~~~~~~l~~~l~~~l~~ 45 (368)
T 2her_A 27 DFINYYDKFKVIVYNVLKK 45 (368)
T ss_dssp TGGGTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3678899999999988764
No 236
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=26.38 E-value=53 Score=28.00 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhCCCeEE
Q 029622 82 AITMKRMLETQFPGIDV 98 (190)
Q Consensus 82 f~e~k~~L~~~yP~i~V 98 (190)
.+++++.|+++ ++++
T Consensus 42 ~~~l~~~L~~~--g~~v 56 (278)
T 1z0s_A 42 VKRIEEALKRL--EVEV 56 (278)
T ss_dssp HHHHHHHHHHT--TCEE
T ss_pred HHHHHHHHHHC--CCEE
Confidence 88889999886 4444
No 237
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=26.37 E-value=14 Score=28.97 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=13.2
Q ss_pred ccccEEEEECCeEeeec
Q 029622 172 SSGAFEVYCNDDLVSDL 188 (190)
Q Consensus 172 sTGAFEIylNd~lV~S~ 188 (190)
.-+..++|+||++|.+.
T Consensus 141 ~G~~i~~~vnG~~v~~~ 157 (185)
T 4b1m_A 141 EGDRFKIYLDDRLVIDA 157 (185)
T ss_dssp ETTEEEEEETTEEEEEE
T ss_pred ECCEEEEEECCEEEEEE
Confidence 34577899999998764
No 238
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=26.14 E-value=1.3e+02 Score=23.42 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=29.2
Q ss_pred ccCCCceEEEEeccCcCcchhHHH-HHHHHHhhCCCeE
Q 029622 61 GIGYGSTVNINFCASCSYRGTAIT-MKRMLETQFPGID 97 (190)
Q Consensus 61 ~~~~G~tV~i~YC~SCGY~~~f~e-~k~~L~~~yP~i~ 97 (190)
..+.+.+++|..++-.|.+....+ +.+.|++.=||+.
T Consensus 22 ~~~~~~~l~v~t~Ni~~~~~~~~~~i~~~i~~~~~DIi 59 (285)
T 2o3h_A 22 PSGKPATLKIASWNVDGLRAWIKKKGLDWVKEEAPDIL 59 (285)
T ss_dssp TTSCBCCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEE
T ss_pred CCCCccceEEEEEecccChhhhhhhHHHHHHhcCCCEE
Confidence 335567899999988887766666 8889999889975
No 239
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=25.98 E-value=40 Score=27.74 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=7.1
Q ss_pred CCceEEEEec
Q 029622 64 YGSTVNINFC 73 (190)
Q Consensus 64 ~G~tV~i~YC 73 (190)
.|.+|+|.|=
T Consensus 43 ~~~~v~v~y~ 52 (336)
T 1p5q_A 43 EGAIVEVALE 52 (336)
T ss_dssp TTCEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 4667888884
No 240
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium binding domain binding protein; NMR {Mus musculus}
Probab=31.93 E-value=14 Score=29.27 Aligned_cols=13 Identities=23% Similarity=0.169 Sum_probs=6.6
Q ss_pred CceEEEEeccCcC
Q 029622 65 GSTVNINFCASCS 77 (190)
Q Consensus 65 G~tV~i~YC~SCG 77 (190)
..++.|.|-+.-|
T Consensus 41 ~g~vsV~y~T~dG 53 (157)
T 2lt9_A 41 RGTVIVPFRTVEG 53 (157)
Confidence 3455565555443
No 241
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=25.85 E-value=20 Score=28.52 Aligned_cols=9 Identities=33% Similarity=0.741 Sum_probs=4.6
Q ss_pred cccccCCCc
Q 029622 58 IVGGIGYGS 66 (190)
Q Consensus 58 ~~~~~~~G~ 66 (190)
..|+.|.|-
T Consensus 30 I~G~~GsGK 38 (245)
T 2jeo_A 30 VSGGTASGK 38 (245)
T ss_dssp EECSTTSSH
T ss_pred EECCCCCCH
Confidence 345555553
No 242
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=25.80 E-value=14 Score=35.22 Aligned_cols=10 Identities=50% Similarity=0.836 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 029622 34 SASHHHHKPP 43 (190)
Q Consensus 34 ~~~~~~~~~~ 43 (190)
+||||||||.
T Consensus 4 ~~~~~~~~~~ 13 (651)
T 3ces_A 4 SHHHHHHHHS 13 (651)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444444443
No 243
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=25.78 E-value=9.3 Score=22.92 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=7.9
Q ss_pred hhhhhhccCCCCC
Q 029622 17 CSDLLNLFTPPPP 29 (190)
Q Consensus 17 ~~d~~~~f~~~~~ 29 (190)
..|+++.+..-.-
T Consensus 10 ltdilsfmksgkr 22 (33)
T 3c0t_B 10 LTDILSFMKSGKR 22 (33)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHcchH
Confidence 3677777764443
No 244
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=25.75 E-value=32 Score=26.25 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=7.5
Q ss_pred eEEEEeccCcCcc
Q 029622 67 TVNINFCASCSYR 79 (190)
Q Consensus 67 tV~i~YC~SCGY~ 79 (190)
.++|..+...+--
T Consensus 34 ~~ki~vvG~~~vG 46 (214)
T 2j1l_A 34 SVKVVLVGDGGCG 46 (214)
T ss_dssp EEEEEEEECTTSS
T ss_pred eEEEEEECcCCCC
Confidence 5666666655543
No 245
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=25.65 E-value=6.7 Score=29.75 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=7.5
Q ss_pred CcCcchhHHHHHHHHHhh
Q 029622 75 SCSYRGTAITMKRMLETQ 92 (190)
Q Consensus 75 SCGY~~~f~e~k~~L~~~ 92 (190)
.|+|=.. .+++|.+.
T Consensus 49 ~Cp~C~~---ak~~L~~~ 63 (135)
T 2wci_A 49 SCGFSAQ---AVQALAAC 63 (135)
T ss_dssp SSHHHHH---HHHHHHTT
T ss_pred CCccHHH---HHHHHHHc
Confidence 5655443 44555444
No 246
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=25.61 E-value=2e+02 Score=22.49 Aligned_cols=50 Identities=6% Similarity=0.036 Sum_probs=28.1
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCCeE-EecccCCCChHHHHHHhHhh
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGID-VVLANYPPPLPKRLLAKVVP 117 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~-V~G~nYpPp~~k~~Lak~l~ 117 (190)
|.+|.+..+.+ ...-++..+.+++..++++ +.++--.+...++.+.++..
T Consensus 50 G~~v~i~~~r~---~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (267)
T 4iiu_A 50 GFNIGVHYHRD---AAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIA 100 (267)
T ss_dssp TCEEEEEESSC---HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCc---hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 45555544332 3455666777777777776 44544455555666655443
No 247
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=25.43 E-value=38 Score=28.77 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=14.0
Q ss_pred cchhHHHHHHHHHhhCCCeEEeccc
Q 029622 78 YRGTAITMKRMLETQFPGIDVVLAN 102 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V~G~n 102 (190)
+......+.+.|+++. +..|+=+|
T Consensus 31 ~D~~aR~la~~l~~~l-g~~vvV~N 54 (312)
T 2f5x_A 31 TDNVARSLAESMRPTL-GETVVVEN 54 (312)
T ss_dssp HHHHHHHHHHHHHHHH-SSCEEEEE
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEe
Confidence 3444456666676665 55565566
No 248
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}
Probab=25.39 E-value=30 Score=29.07 Aligned_cols=10 Identities=0% Similarity=-0.041 Sum_probs=5.0
Q ss_pred HHHHHHHHhh
Q 029622 83 ITMKRMLETQ 92 (190)
Q Consensus 83 ~e~k~~L~~~ 92 (190)
+++++.|..+
T Consensus 52 ~~mq~~ia~e 61 (308)
T 2otn_A 52 ALVAEKVSNI 61 (308)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 5555255544
No 249
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=25.30 E-value=43 Score=29.71 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=9.4
Q ss_pred CCCChHHHHHHhHhhHH
Q 029622 103 YPPPLPKRLLAKVVPAV 119 (190)
Q Consensus 103 YpPp~~k~~Lak~l~~~ 119 (190)
+..+.||+++|.+++..
T Consensus 47 ~~~~l~r~~lAEflGT~ 63 (340)
T 3iyz_A 47 WTQAFWKAVTAEFLAML 63 (340)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34445666666666554
No 250
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=25.22 E-value=20 Score=32.00 Aligned_cols=9 Identities=44% Similarity=0.815 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 029622 32 PKSASHHHH 40 (190)
Q Consensus 32 ~~~~~~~~~ 40 (190)
+||||||||
T Consensus 12 ~~~~~~~~~ 20 (329)
T 3bux_B 12 QPHHHHHHH 20 (329)
T ss_dssp ---------
T ss_pred Ccccccccc
Confidence 355555544
No 251
>3t21_A Endo-type membrane-bound lytic murein transglycos; goose type lysozyme-like structure, lytic transglycosylase,; HET: NAG; 1.90A {Escherichia coli} PDB: 3t1z_A* 4hjy_A* 4hjz_A* 3t36_A 3t4i_A* 4hjv_A* 2y8p_A
Probab=25.11 E-value=15 Score=29.75 Aligned_cols=12 Identities=0% Similarity=-0.150 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 029622 156 IASTWLIGNFLQ 167 (190)
Q Consensus 156 ~~~~fflgN~ie 167 (190)
-++++.|..+++
T Consensus 118 ~~Ga~yL~~l~~ 129 (206)
T 3t21_A 118 SMGAAYLNILET 129 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555554444
No 252
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=25.02 E-value=11 Score=26.98 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=20.2
Q ss_pred EEEEeccCcCcchhHHHHHHHHHh
Q 029622 68 VNINFCASCSYRGTAITMKRMLET 91 (190)
Q Consensus 68 V~i~YC~SCGY~~~f~e~k~~L~~ 91 (190)
-.+--|.+||.+..|+.+++.|++
T Consensus 38 ~~lPpC~aCGIkP~~~~i~~sI~~ 61 (76)
T 2j9u_B 38 LPTPICINCGVPADYELTKSSINC 61 (76)
T ss_dssp SSCCBCTTTCCBCCHHHHGGGCBC
T ss_pred CCCCcccccCccCCHHHHHHHHhc
Confidence 466779999999999999886665
No 253
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=24.66 E-value=72 Score=25.96 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=27.4
Q ss_pred eEEEEeccCcC-cchhHHHHHHHHHhhCCCeEEeccc
Q 029622 67 TVNINFCASCS-YRGTAITMKRMLETQFPGIDVVLAN 102 (190)
Q Consensus 67 tV~i~YC~SCG-Y~~~f~e~k~~L~~~yP~i~V~G~n 102 (190)
||+|.++.... -...++++.+..++++|+++|+-..
T Consensus 2 tl~v~~w~~~~~~~~~~~~~~~~F~~~~p~i~V~~~~ 38 (371)
T 3thi_A 2 TLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTD 38 (371)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeeEEEEe
Confidence 67888887553 3456678888889999999987654
No 254
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=24.60 E-value=19 Score=25.10 Aligned_cols=7 Identities=57% Similarity=1.099 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 029622 35 ASHHHHK 41 (190)
Q Consensus 35 ~~~~~~~ 41 (190)
||||||.
T Consensus 5 ~~~~~~~ 11 (91)
T 2a1j_B 5 HHHHHHS 11 (91)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4444444
No 255
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=24.08 E-value=1.8e+02 Score=26.11 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=33.6
Q ss_pred CceEEEEeccCcC--c-----------chhHHHHHHHHHhhCCCeE-EecccCCCC-hHHHHHHhHhhHH
Q 029622 65 GSTVNINFCASCS--Y-----------RGTAITMKRMLETQFPGID-VVLANYPPP-LPKRLLAKVVPAV 119 (190)
Q Consensus 65 G~tV~i~YC~SCG--Y-----------~~~f~e~k~~L~~~yP~i~-V~G~nYpPp-~~k~~Lak~l~~~ 119 (190)
..+++|..++..= + ..+|+++.+.+.+.=||+. +.|+-|.-. +..+.+.++...+
T Consensus 30 ~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~~~D~VliaGDlfd~~~~~~~~~~~~~~~L 99 (431)
T 3t1i_A 30 ENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPSRKTLHTCLELL 99 (431)
T ss_dssp GGEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHH
T ss_pred CCCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhcCCCEEEEcCccccCCCCCHHHHHHHHHHH
Confidence 4567888877662 2 1367777777888889965 677766533 2234444444443
No 256
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=24.06 E-value=44 Score=26.40 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCeEEeccc
Q 029622 83 ITMKRMLETQFPGIDVVLAN 102 (190)
Q Consensus 83 ~e~k~~L~~~yP~i~V~G~n 102 (190)
+.-+++|+++||+.+|+=+|
T Consensus 122 ~~t~~iLk~~YpdY~It~sd 141 (144)
T 2hw4_A 122 AISTEKIKAKYPDYEVTWAN 141 (144)
T ss_dssp HHHHHHHHHHSTTSEEEECC
T ss_pred HHHHHHHHHHCCCcEEEeeC
Confidence 67789999999999987554
No 257
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}
Probab=24.02 E-value=96 Score=26.64 Aligned_cols=51 Identities=2% Similarity=-0.185 Sum_probs=33.1
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCC----CeEEecccCCCChHHHHHHhHh
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFP----GIDVVLANYPPPLPKRLLAKVV 116 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP----~i~V~G~nYpPp~~k~~Lak~l 116 (190)
+-.++-+-=|.-.+.+....++.+.+.+..+ +++| .--||-..-..+++.+
T Consensus 25 MRk~~i~gNWKMn~~~~~~~~l~~~l~~~~~~~~~~vev--vv~Pp~~~L~~v~~~~ 79 (275)
T 3kxq_A 25 NIRPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEA--LICVPATLLSRAFDIL 79 (275)
T ss_dssp -CCCEEEEECCBCCCGGGHHHHHHHHHHHC----CCSEE--EEECCTTTHHHHHHHH
T ss_pred CCCCEEEEEhhhCcCHHHHHHHHHHHHhhcccccCCceE--EEeCCHHHHHHHHHHh
Confidence 3345566667777888888888888877654 3443 4567777666665554
No 258
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=24.01 E-value=1e+02 Score=23.47 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=31.2
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCC
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp 106 (190)
++|...+-..|+|=+.++..-+.+.++||+ +|+-..+|..
T Consensus 26 v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~ 65 (193)
T 3hz8_A 26 VEVLEFFGYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV 65 (193)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred cEEEEEECCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence 478888888999999998888888999998 5555555553
No 259
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=23.98 E-value=54 Score=27.19 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=10.4
Q ss_pred CcchhHHHHHHHHHhh
Q 029622 77 SYRGTAITMKRMLETQ 92 (190)
Q Consensus 77 GY~~~f~e~k~~L~~~ 92 (190)
|......++.+.|.++
T Consensus 43 G~~~~~~~la~~L~~~ 58 (438)
T 3c48_A 43 GMNVYILSTATELAKQ 58 (438)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhc
Confidence 4445567777777765
No 260
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=23.87 E-value=44 Score=25.31 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=6.5
Q ss_pred HHHHHHHHHhh
Q 029622 82 AITMKRMLETQ 92 (190)
Q Consensus 82 f~e~k~~L~~~ 92 (190)
.+|++++|++.
T Consensus 23 ~~EL~~~l~~l 33 (174)
T 2i7a_A 23 ATQLQGLLNQE 33 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34666666654
No 261
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=23.81 E-value=43 Score=26.39 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=11.5
Q ss_pred HHHHHHHHhhCCCeEEecccC
Q 029622 83 ITMKRMLETQFPGIDVVLANY 103 (190)
Q Consensus 83 ~e~k~~L~~~yP~i~V~G~nY 103 (190)
++..+.+++.-||+.|.--+-
T Consensus 71 ~~al~~~~~~~~DlvllD~~l 91 (249)
T 3q9s_A 71 MNGLIKAREDHPDLILLDLGL 91 (249)
T ss_dssp HHHHHHHHHSCCSEEEEECCS
T ss_pred HHHHHHHhcCCCCEEEEcCCC
Confidence 344445555567776654443
No 262
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=23.76 E-value=67 Score=21.16 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=26.0
Q ss_pred CceEEE-EeccCcCcchhHHHHHHHHHhhCCCeEEecccCCC
Q 029622 65 GSTVNI-NFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105 (190)
Q Consensus 65 G~tV~i-~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpP 105 (190)
|..+-+ .|-..|++=+.+...-+.+.++|+++.+..-+...
T Consensus 26 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~ 67 (113)
T 1ti3_A 26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDE 67 (113)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTT
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccc
Confidence 444444 44444777777766666677789998876666543
No 263
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=23.73 E-value=64 Score=27.30 Aligned_cols=7 Identities=57% Similarity=1.099 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 029622 35 ASHHHHK 41 (190)
Q Consensus 35 ~~~~~~~ 41 (190)
||||||+
T Consensus 5 ~~~~~~~ 11 (412)
T 4fe7_A 5 HHHHHHS 11 (412)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4444443
No 264
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=23.60 E-value=32 Score=28.05 Aligned_cols=56 Identities=21% Similarity=0.155 Sum_probs=30.7
Q ss_pred HHHhHhhHHHHHHHhHhhcCCccc--cccCCCchhhhhhhhcCchhHHHHHHHHHHHHHHhhhc
Q 029622 111 LLAKVVPAVQIGVIGIVVAGEQIF--PMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQS 172 (190)
Q Consensus 111 ~Lak~l~~~q~~lI~liv~G~~iF--~~LG~~~P~w~~~~~~NK~~~~~~~fflgN~ie~~L~s 172 (190)
+.-|+..+.+-+..++|+...+-- ....|..+. ...+-+.++..--|..|...|.+
T Consensus 118 F~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~------~~~IPsv~Is~~~G~~L~~~L~~ 175 (194)
T 3icu_A 118 FADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG------AVDIVAIMIGNLKGTKILQSIQR 175 (194)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTT------CCSSEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCC------CCceeEEEECHHHHHHHHHHHHC
Confidence 556777888888888887664210 111221111 12344555555567777776643
No 265
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=23.49 E-value=17 Score=32.50 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=8.8
Q ss_pred hHHHHHHHhHhhcCC
Q 029622 117 PAVQIGVIGIVVAGE 131 (190)
Q Consensus 117 ~~~q~~lI~liv~G~ 131 (190)
-++|.++..+.++..
T Consensus 120 l~lq~lLp~~lFa~~ 134 (358)
T 3tut_A 120 LVLQTVLPALWFADG 134 (358)
T ss_dssp HHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhCCC
Confidence 355666666665544
No 266
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=23.45 E-value=17 Score=26.36 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=10.4
Q ss_pred CCceEEEEeccCcCcchh
Q 029622 64 YGSTVNINFCASCSYRGT 81 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~ 81 (190)
.|-+|.|..-...-|++.
T Consensus 29 l~k~V~V~Lk~gr~~~G~ 46 (94)
T 4emk_A 29 IGSNLWVIMKSEREFAGT 46 (94)
T ss_dssp TTSEEEEEESSSEEEEEE
T ss_pred cCCeEEEEECCCcEEEEE
Confidence 455777766665544443
No 267
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=23.45 E-value=24 Score=23.22 Aligned_cols=9 Identities=56% Similarity=0.870 Sum_probs=4.9
Q ss_pred CCCCCCCCC
Q 029622 32 PKSASHHHH 40 (190)
Q Consensus 32 ~~~~~~~~~ 40 (190)
+++||||||
T Consensus 41 Kas~~~~~~ 49 (49)
T 4gmn_B 41 KGSHHHHHH 49 (49)
T ss_pred ccccccccC
Confidence 456665543
No 268
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=23.31 E-value=33 Score=29.66 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=19.7
Q ss_pred EeccCcCcchhHHHHHHHHHh--hCC-CeE----EecccC
Q 029622 71 NFCASCSYRGTAITMKRMLET--QFP-GID----VVLANY 103 (190)
Q Consensus 71 ~YC~SCGY~~~f~e~k~~L~~--~yP-~i~----V~G~nY 103 (190)
..|.-.|.|..|..++..+++ +.| +++ ++|.+|
T Consensus 29 kI~~v~Gtr~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~ 68 (403)
T 3ot5_A 29 KVMSIFGTRPEAIKMAPLVLALEKEPETFESTVVITAQHR 68 (403)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHHTCTTTEEEEEEECC---
T ss_pred eEEEEEecChhHHHHHHHHHHHHhCCCCCcEEEEEecCcH
Confidence 457777889888877665543 236 554 567775
No 269
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=23.29 E-value=72 Score=25.23 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=18.3
Q ss_pred CceEEEEeccCc-C----cchhHHHHHHHHHhhCCCeEE
Q 029622 65 GSTVNINFCASC-S----YRGTAITMKRMLETQFPGIDV 98 (190)
Q Consensus 65 G~tV~i~YC~SC-G----Y~~~f~e~k~~L~~~yP~i~V 98 (190)
.+.|-| +|.+- + |....+++.+.|.++ ++.|
T Consensus 13 ~~~VaV-~Gs~~~g~~~~~~~~A~~lg~~La~~--g~~l 48 (176)
T 2iz6_A 13 KPIIGV-MGPGKADTAENQLVMANELGKQIATH--GWIL 48 (176)
T ss_dssp CCEEEE-ECCCGGGCCHHHHHHHHHHHHHHHHT--TCEE
T ss_pred CCeEEE-EeCCCCCCCHHHHHHHHHHHHHHHHC--CCEE
Confidence 346777 77665 3 455556666666665 5553
No 270
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=23.20 E-value=90 Score=24.32 Aligned_cols=36 Identities=3% Similarity=-0.042 Sum_probs=18.4
Q ss_pred EEEEeccCc-CcchhHHHHHHHHHhhCCCeE-EecccC
Q 029622 68 VNINFCASC-SYRGTAITMKRMLETQFPGID-VVLANY 103 (190)
Q Consensus 68 V~i~YC~SC-GY~~~f~e~k~~L~~~yP~i~-V~G~nY 103 (190)
++|..++.- +-...++++.+.+++.=|+.- +.|+-.
T Consensus 26 mki~~iSD~H~~~~~l~~~l~~~~~~~~d~vi~~GDl~ 63 (208)
T 1su1_A 26 MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVL 63 (208)
T ss_dssp CEEEEECCCTTBHHHHHHHHHHHHHHTCSEEEECSCCS
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 566655544 223444555555544457765 455543
No 271
>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=23.19 E-value=90 Score=22.55 Aligned_cols=31 Identities=13% Similarity=0.026 Sum_probs=18.0
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHH---hhCCCe
Q 029622 66 STVNINFCASCSYRGTAITMKRMLE---TQFPGI 96 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~---~~yP~i 96 (190)
.++.+.+-..-|.+..|++.-+.+. .+.||.
T Consensus 24 i~vi~~~~vkpg~~~~f~~~l~~~~~~sr~EpGc 57 (124)
T 2omo_A 24 YVTIVYASVKTDKTEAFKEATRMNHEQSIREPGN 57 (124)
T ss_dssp EEEEEEEEBCGGGHHHHHHHHHHHHHHHTTSTTE
T ss_pred EEEEEEEEECcCcHHHHHHHHHHHHHHHhcCCCc
Confidence 4556666666677777766543332 235774
No 272
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=23.13 E-value=49 Score=24.14 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=6.4
Q ss_pred eccCcCcchh
Q 029622 72 FCASCSYRGT 81 (190)
Q Consensus 72 YC~SCGY~~~ 81 (190)
+...||..++
T Consensus 31 ~~C~CG~S~~ 40 (87)
T 3tbn_A 31 HWCACGRSKA 40 (87)
T ss_dssp EECSSSCCSS
T ss_pred EEeeCCCCCC
Confidence 5667876554
No 273
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=23.00 E-value=66 Score=25.83 Aligned_cols=26 Identities=8% Similarity=-0.001 Sum_probs=18.4
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHH
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRML 89 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L 89 (190)
.|..|.|....+--.++.++.|.+..
T Consensus 29 ~~~~v~~~i~~~~~l~kl~~~y~~~~ 54 (209)
T 3uf8_A 29 GSSEIFFKIKKTTPLRRLMEAFAKRQ 54 (209)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHH
T ss_pred CCCEEEEEEeeCCHHHHHHHHHHHhh
Confidence 46677777777777777777776654
No 274
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=22.98 E-value=18 Score=36.48 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=7.0
Q ss_pred CCCeEEecccCCC
Q 029622 93 FPGIDVVLANYPP 105 (190)
Q Consensus 93 yP~i~V~G~nYpP 105 (190)
|--++|.|+-|..
T Consensus 196 ~~r~~~~g~~~~~ 208 (993)
T 2ygr_A 196 YSRVRVDGVVHPL 208 (993)
T ss_dssp CCCEEESSCEECT
T ss_pred ceEEEECCEEEec
Confidence 4445555555544
No 275
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=22.96 E-value=72 Score=26.90 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=9.8
Q ss_pred HHHHHHHhhCCCeEEec
Q 029622 84 TMKRMLETQFPGIDVVL 100 (190)
Q Consensus 84 e~k~~L~~~yP~i~V~G 100 (190)
.+.+.+.++.|+.++.+
T Consensus 37 ~~~~~l~~~~~~~~lva 53 (357)
T 3ec7_A 37 DHLRRLANTVSGVEVVA 53 (357)
T ss_dssp HHHHHHHHTCTTEEEEE
T ss_pred HHHHHHHhhCCCcEEEE
Confidence 34555555567776654
No 276
>2vng_A CPE0329; family 51 carbohydrate binding module, family 98 glycoside hydrolase, A-trisaccharide, blood group antigen, hydrolase; HET: A2G GAL FUC; 1.4A {Clostridium perfringens} SCOP: b.18.1.33 PDB: 2vno_A* 2vnr_A
Probab=22.87 E-value=49 Score=26.70 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=13.2
Q ss_pred cEEEEECCeEeeecC
Q 029622 175 AFEVYCNDDLVSDLS 189 (190)
Q Consensus 175 AFEIylNd~lV~S~~ 189 (190)
.||||.||+++|+..
T Consensus 109 ~F~V~~DGk~l~~S~ 123 (180)
T 2vng_A 109 KIEVVVDGKVIYSTI 123 (180)
T ss_dssp EEEEEETTEEEEETT
T ss_pred EEEEEeCCeEEEEcC
Confidence 599999999999864
No 277
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=22.85 E-value=19 Score=33.35 Aligned_cols=7 Identities=57% Similarity=1.123 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 029622 35 ASHHHHK 41 (190)
Q Consensus 35 ~~~~~~~ 41 (190)
|||||||
T Consensus 2 ~~~~~~~ 8 (619)
T 3s94_A 2 HHHHHHH 8 (619)
T ss_dssp -------
T ss_pred Ccccccc
Confidence 3333333
No 278
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=22.79 E-value=35 Score=26.80 Aligned_cols=8 Identities=63% Similarity=1.053 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 029622 34 SASHHHHK 41 (190)
Q Consensus 34 ~~~~~~~~ 41 (190)
+||||||+
T Consensus 4 ~~~~~~~~ 11 (153)
T 2nnz_A 4 SHHHHHHS 11 (153)
T ss_dssp --------
T ss_pred cccccccc
Confidence 34444443
No 279
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=22.79 E-value=1.4e+02 Score=21.17 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=28.0
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp 104 (190)
++|...+...|++=......-+.+.++|++++|.+-+..
T Consensus 39 ~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d 77 (165)
T 3ha9_A 39 VVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFW 77 (165)
T ss_dssp EEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred EEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEec
Confidence 455556667787766666555667888999998887765
No 280
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=22.70 E-value=27 Score=29.89 Aligned_cols=9 Identities=44% Similarity=0.479 Sum_probs=4.3
Q ss_pred ccccCCCce
Q 029622 59 VGGIGYGST 67 (190)
Q Consensus 59 ~~~~~~G~t 67 (190)
.|=.+.|+|
T Consensus 25 ~GL~NlGNT 33 (415)
T 1vjv_A 25 VGFKNMGNT 33 (415)
T ss_dssp CEECCCSSC
T ss_pred CCCEeCCcc
Confidence 344455643
No 281
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=22.51 E-value=8.2 Score=33.39 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHh
Q 029622 80 GTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAK 114 (190)
Q Consensus 80 ~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak 114 (190)
..|+++...+.+.-+++.++-.|---.++|..++.
T Consensus 43 eRYddMv~~M~e~~~eLs~EERNLLSvAYKNvIga 77 (268)
T 3efz_A 43 GNYKDVIKVLTESSDFRDNSLILLLAGSLRNRVTS 77 (268)
T ss_dssp ---CHHHHHHTC-----CCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhcc
Confidence 45666666663333445555555444444444443
No 282
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=22.32 E-value=73 Score=27.24 Aligned_cols=35 Identities=3% Similarity=0.091 Sum_probs=22.6
Q ss_pred CCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecc
Q 029622 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLA 101 (190)
Q Consensus 64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~ 101 (190)
+-.+++|--+..||.=+ ..+.+.+.+ -|++++.|.
T Consensus 18 m~~~irV~V~Ga~GrMG--r~i~~~v~~-~~~~eLvg~ 52 (288)
T 3ijp_A 18 GPGSMRLTVVGANGRMG--RELITAIQR-RKDVELCAV 52 (288)
T ss_dssp ---CEEEEESSTTSHHH--HHHHHHHHT-CSSEEEEEE
T ss_pred ccCCeEEEEECCCCHHH--HHHHHHHHh-CCCCEEEEE
Confidence 33568888888887544 345565554 499998876
No 283
>3kxe_A Toxin protein PARE-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=22.01 E-value=19 Score=25.95 Aligned_cols=32 Identities=3% Similarity=0.033 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHhhHHH
Q 029622 79 RGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120 (190)
Q Consensus 79 ~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l~~~q 120 (190)
+...+++.+++.+++ .|....+++.++...++
T Consensus 25 ~~DL~~I~~yi~~~~----------~~~~A~~~~~~I~~~i~ 56 (110)
T 3kxe_A 25 KADLDDIWTYSEQRW----------GVEQAADYARELQATIE 56 (110)
T ss_dssp HHHHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc----------CHHHHHHHHHHHHHHHH
Confidence 444455555555542 23455566666554443
No 284
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=21.98 E-value=50 Score=30.56 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHhhCCCeEEec
Q 029622 78 YRGTAITMKRMLETQFPGIDVVL 100 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V~G 100 (190)
|.+.|.++++++++.+|++++.+
T Consensus 207 Y~~~~~~~a~Aik~~dP~I~lia 229 (504)
T 3ug3_A 207 YARAAKEYTKWMKVFDPTIKAIA 229 (504)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEE
Confidence 88999999999999999999854
No 285
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=21.76 E-value=1.5e+02 Score=24.06 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=21.8
Q ss_pred CCceEEEEeccCc----CcchhHHHHHHHHHhhC---CCeEEeccc
Q 029622 64 YGSTVNINFCASC----SYRGTAITMKRMLETQF---PGIDVVLAN 102 (190)
Q Consensus 64 ~G~tV~i~YC~SC----GY~~~f~e~k~~L~~~y---P~i~V~G~n 102 (190)
.+.+++|--+... ....+.+.+.+++++.- +++.|-.|.
T Consensus 17 ~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~ 62 (281)
T 3p8k_A 17 RGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEM 62 (281)
T ss_dssp TTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSS
T ss_pred cCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCC
Confidence 3445665544332 24567788888887652 445554444
No 286
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.72 E-value=23 Score=25.29 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=0.9
Q ss_pred CCCCCCCCCCC
Q 029622 34 SASHHHHKPPI 44 (190)
Q Consensus 34 ~~~~~~~~~~~ 44 (190)
+||||||..++
T Consensus 4 ~~~~~~~~~~~ 14 (99)
T 1p4w_A 4 SHHHHHHGSYT 14 (99)
T ss_dssp ---------CC
T ss_pred cccCCCCCCCC
Confidence 34555554344
No 287
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=21.61 E-value=63 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=15.3
Q ss_pred CcchhHHHHHHHHHhhCCCeE-Eeccc
Q 029622 77 SYRGTAITMKRMLETQFPGID-VVLAN 102 (190)
Q Consensus 77 GY~~~f~e~k~~L~~~yP~i~-V~G~n 102 (190)
-|.....++.+.|.++ ++. |.|..
T Consensus 42 ~~~~~A~~lg~~LA~~--G~~vVsGg~ 66 (195)
T 1rcu_A 42 ELRDICLELGRTLAKK--GYLVFNGGR 66 (195)
T ss_dssp GGHHHHHHHHHHHHHT--TCEEEECCS
T ss_pred HHHHHHHHHHHHHHHC--CCEEEeCCH
Confidence 4556777777777775 554 56643
No 288
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=21.55 E-value=60 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHhh
Q 029622 81 TAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVP 117 (190)
Q Consensus 81 ~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l~ 117 (190)
..+-++.+++.=|=-+ =+...|-...--+.+++++.
T Consensus 50 ~~~~l~~Al~~Gi~~~-DTA~~Yg~G~sE~~lG~al~ 85 (317)
T 1ynp_A 50 ARRIMDEVLELGINYL-DTADLYNQGLNEQFVGKALK 85 (317)
T ss_dssp HHHHHHHHHHTTCCEE-ECSCBTTBCCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCeE-ECccccCCCchHHHHHHHHh
Confidence 3444444444322211 24556655445566766653
No 289
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=21.34 E-value=32 Score=26.23 Aligned_cols=14 Identities=14% Similarity=0.038 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHhhC
Q 029622 80 GTAITMKRMLETQF 93 (190)
Q Consensus 80 ~~f~e~k~~L~~~y 93 (190)
....|+|.+|++=+
T Consensus 36 t~l~evK~lL~~Wv 49 (124)
T 3vu7_H 36 VEFNDVKTLLREWI 49 (124)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 46688888887654
No 290
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=21.20 E-value=68 Score=23.92 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=13.1
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhC
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQF 93 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~y 93 (190)
.++|..+...+--|.=. +.++...++
T Consensus 25 ~~ki~vvG~~~~GKSsl-i~~l~~~~~ 50 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCL-LIVFSKDQF 50 (201)
T ss_dssp EEEEEEEESTTSSHHHH-HHHHHHSSC
T ss_pred ceEEEEECCCCCCHHHH-HHHHHhCcC
Confidence 56666666665444321 234444444
No 291
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=21.10 E-value=44 Score=28.78 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=12.4
Q ss_pred eEEEEeccCcCcchhH
Q 029622 67 TVNINFCASCSYRGTA 82 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f 82 (190)
++.|.-.++|.....+
T Consensus 27 ki~IvtDSt~dL~~e~ 42 (313)
T 1mgp_A 27 KVKILVDSTADVPFSW 42 (313)
T ss_dssp CEEEEEEGGGCCCTTH
T ss_pred CEEEEEECCCCCCHHH
Confidence 6888888888877654
No 292
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=21.05 E-value=25 Score=26.23 Aligned_cols=8 Identities=0% Similarity=0.235 Sum_probs=3.1
Q ss_pred EEeccCcC
Q 029622 70 INFCASCS 77 (190)
Q Consensus 70 i~YC~SCG 77 (190)
+..+...|
T Consensus 77 l~l~Dt~G 84 (192)
T 2il1_A 77 LQIWDTAG 84 (192)
T ss_dssp EEEEEECC
T ss_pred EEEEeCCC
Confidence 33334344
No 293
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=20.98 E-value=32 Score=23.12 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 029622 31 PPKSASH 37 (190)
Q Consensus 31 ~~~~~~~ 37 (190)
..|||||
T Consensus 104 ~~p~~~~ 110 (112)
T 2key_A 104 GLEHHHH 110 (112)
T ss_dssp TCCCCCS
T ss_pred CCccccc
Confidence 3444433
No 294
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.96 E-value=20 Score=26.80 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 029622 35 ASHHHHKPP 43 (190)
Q Consensus 35 ~~~~~~~~~ 43 (190)
||||||+||
T Consensus 3 ~~~~~~~~~ 11 (119)
T 3ol1_A 3 HHHHHHSHM 11 (119)
T ss_dssp ---------
T ss_pred CcccccCCc
Confidence 444444433
No 295
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=20.86 E-value=14 Score=29.04 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=7.1
Q ss_pred cccccCCCce
Q 029622 58 IVGGIGYGST 67 (190)
Q Consensus 58 ~~~~~~~G~t 67 (190)
..|++|.|-+
T Consensus 17 ltG~~GSGKS 26 (192)
T 2grj_A 17 VTGKIGTGKS 26 (192)
T ss_dssp EECSTTSSHH
T ss_pred EECCCCCCHH
Confidence 4588888854
No 296
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=20.82 E-value=91 Score=21.23 Aligned_cols=38 Identities=5% Similarity=-0.127 Sum_probs=22.4
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhC-CCeEEecccC
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQF-PGIDVVLANY 103 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~y-P~i~V~G~nY 103 (190)
+.|...|-..|++=+.+...-+.+.++| +++.+..-+.
T Consensus 33 ~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~ 71 (119)
T 1w4v_A 33 PVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDI 71 (119)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEET
T ss_pred cEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 4555666566776666665545555666 4566555443
No 297
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=20.81 E-value=22 Score=26.83 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=2.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 029622 35 ASHHHHKPPIPSENLTPDFPSQ 56 (190)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ 56 (190)
||||||..-+|..+.-+.|-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (207)
T 2fv8_A 2 HHHHHHSSGVDLGTENLYFQSM 23 (207)
T ss_dssp -----------------CGGGS
T ss_pred Cccccccccccccccccccccc
Confidence 3444443344444444444433
No 298
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Probab=20.80 E-value=21 Score=29.98 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=0.0
Q ss_pred CCCCCC
Q 029622 35 ASHHHH 40 (190)
Q Consensus 35 ~~~~~~ 40 (190)
||||||
T Consensus 4 ~~~~~~ 9 (229)
T 2grx_C 4 HHHHHH 9 (229)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 299
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=20.75 E-value=46 Score=24.06 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=21.7
Q ss_pred CceEEEEe---ccCcCcchh-H-HHHHHHHHhhCCCeE
Q 029622 65 GSTVNINF---CASCSYRGT-A-ITMKRMLETQFPGID 97 (190)
Q Consensus 65 G~tV~i~Y---C~SCGY~~~-f-~e~k~~L~~~yP~i~ 97 (190)
+.+|++.+ |.+|..... . .-+++.|+++.|++.
T Consensus 44 ~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~ 81 (92)
T 1veh_A 44 DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVE 81 (92)
T ss_dssp TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCC
T ss_pred CCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCC
Confidence 35888888 777743322 1 235678888899974
No 300
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=20.74 E-value=21 Score=28.27 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=9.1
Q ss_pred HHHHHHHH---hhCCCe
Q 029622 83 ITMKRMLE---TQFPGI 96 (190)
Q Consensus 83 ~e~k~~L~---~~yP~i 96 (190)
++++++|+ ++++|+
T Consensus 22 ~~Lq~~L~~ll~rv~Gl 38 (143)
T 3cpt_A 22 DDLKRFLYKKLPSVEGL 38 (143)
T ss_dssp CHHHHHHHHHGGGSTTE
T ss_pred HHHHHHHHHHHhccCCe
Confidence 67777764 456774
No 301
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=20.73 E-value=21 Score=25.31 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 029622 32 PKSASHHH 39 (190)
Q Consensus 32 ~~~~~~~~ 39 (190)
+|.|||||
T Consensus 80 dp~~~~~~ 87 (88)
T 3jtz_A 80 NLEHHHHH 87 (88)
T ss_dssp --------
T ss_pred CchhcccC
Confidence 34454444
No 302
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=20.60 E-value=21 Score=27.64 Aligned_cols=16 Identities=6% Similarity=-0.078 Sum_probs=9.6
Q ss_pred CeEEecccCCCChHHH
Q 029622 95 GIDVVLANYPPPLPKR 110 (190)
Q Consensus 95 ~i~V~G~nYpPp~~k~ 110 (190)
+.+|+|-...+...+.
T Consensus 77 ~~~v~~vD~s~~~~~~ 92 (204)
T 3njr_A 77 GGRAITIEPRADRIEN 92 (204)
T ss_dssp TCEEEEEESCHHHHHH
T ss_pred CCEEEEEeCCHHHHHH
Confidence 6677776665554443
No 303
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=20.37 E-value=31 Score=28.09 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=3.4
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCC
Q 029622 34 SASHHHHKPPIP-SENLTPDFPSQ 56 (190)
Q Consensus 34 ~~~~~~~~~~~~-~~~~~~~~~~~ 56 (190)
+||||||+ .+| .....+=.|-+
T Consensus 4 ~~~~~~~~-~~~~~~~~~iV~PGd 26 (209)
T 2nn6_I 4 SHHHHHHS-QDPMAPPVRYCIPGE 26 (209)
T ss_dssp -----------------CCCCTTC
T ss_pred cccccccc-cCCccCCCcEEcCCC
Confidence 34444444 232 33334445544
No 304
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A
Probab=20.30 E-value=95 Score=27.88 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHhhCCCeEEe--cccCC
Q 029622 78 YRGTAITMKRMLETQFPGIDVV--LANYP 104 (190)
Q Consensus 78 Y~~~f~e~k~~L~~~yP~i~V~--G~nYp 104 (190)
|...|.++++++++.+|+++|. |...+
T Consensus 190 Y~~~~~~~a~aik~~dP~i~via~G~~~~ 218 (502)
T 1qw9_A 190 YGRIACEAAKVMKWVDPTIELVVCGSSNR 218 (502)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEECCCSCT
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 8889999999999999999988 55543
No 305
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=20.13 E-value=22 Score=28.38 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 029622 35 ASHHHHKPPIPSENLTPDFPSQ 56 (190)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ 56 (190)
||||||+.-.|+....+.|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (249)
T 3ber_A 2 HHHHHHSSGVDLGTENLYFQSM 23 (249)
T ss_dssp ----------------------
T ss_pred CcccccccCCCCCCCccccccc
Confidence 4444444344444455555543
No 306
>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}
Probab=20.10 E-value=24 Score=27.35 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=6.3
Q ss_pred eEEEEeccCcCc
Q 029622 67 TVNINFCASCSY 78 (190)
Q Consensus 67 tV~i~YC~SCGY 78 (190)
.+++-|...|+|
T Consensus 22 m~~Ly~~~~sp~ 33 (230)
T 4hz2_A 22 SMRIYGMNGSGN 33 (230)
T ss_dssp CCEEEECTTCHH
T ss_pred hheeeCCCCCcc
Confidence 355555555543
No 307
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=20.06 E-value=66 Score=26.63 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=12.1
Q ss_pred eEEEEeccCcC--cchhHHHHHHHHHhh
Q 029622 67 TVNINFCASCS--YRGTAITMKRMLETQ 92 (190)
Q Consensus 67 tV~i~YC~SCG--Y~~~f~e~k~~L~~~ 92 (190)
.++|.++..-+ --..+..+.+.|.++
T Consensus 20 m~rIl~~~~~~~GHv~p~l~La~~L~~~ 47 (415)
T 3rsc_A 20 MAHLLIVNVASHGLILPTLTVVTELVRR 47 (415)
T ss_dssp CCEEEEECCSCHHHHGGGHHHHHHHHHT
T ss_pred CCEEEEEeCCCccccccHHHHHHHHHHC
Confidence 34555554321 122235556666554
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=20.05 E-value=25 Score=27.41 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.4
Q ss_pred cccccCCCc
Q 029622 58 IVGGIGYGS 66 (190)
Q Consensus 58 ~~~~~~~G~ 66 (190)
..|+.|.|-
T Consensus 32 l~Gp~GsGK 40 (231)
T 3lnc_A 32 LSSPSGCGK 40 (231)
T ss_dssp EECSCC---
T ss_pred EECCCCCCH
Confidence 446666664
Done!