Query 029622
Match_columns 190
No_of_seqs 121 out of 134
Neff 4.5
Searched_HMMs 13730
Date Tue Mar 26 02:19:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fa8a1 c.47.1.23 (A:4-89) Hyp 98.8 4.5E-09 3.3E-13 76.1 6.1 31 65-95 2-32 (86)
2 d2onsa1 c.94.1.1 (A:32-342) Mo 78.8 1.5 0.00011 31.1 5.1 45 66-115 2-46 (311)
3 d1xg8a_ c.47.1.17 (A:) Hypothe 52.2 3.6 0.00026 29.6 2.3 26 72-97 18-47 (111)
4 d1th5a1 d.52.8.1 (A:154-226) N 36.7 11 0.00077 24.7 2.6 31 65-97 34-67 (73)
5 d1edqa1 b.1.18.2 (A:24-132) Ch 33.7 11 0.00078 26.8 2.3 15 175-189 53-67 (109)
6 d1xhja_ d.52.8.1 (A:) Nitrogen 31.2 29 0.0021 23.2 4.2 36 65-100 37-78 (88)
7 d1eu8a_ c.94.1.1 (A:) D-maltod 31.1 38 0.0028 25.5 5.5 42 67-108 5-46 (407)
8 d3thia_ c.94.1.1 (A:) Thiamina 30.5 24 0.0017 26.5 4.1 37 67-103 2-39 (362)
9 d2vnga1 b.18.1.33 (A:39-209) U 28.6 16 0.0011 27.5 2.7 16 173-188 100-115 (171)
10 d1uh6a_ d.15.1.1 (A:) Ubiquiti 27.6 65 0.0047 21.5 5.7 15 79-93 48-62 (100)
11 d2hw4a1 d.322.1.1 (A:5-122) Ph 26.6 18 0.0013 25.8 2.5 19 83-101 99-117 (118)
12 d1s3aa1 c.47.1.22 (A:15-99) NA 26.4 39 0.0028 21.8 4.1 32 67-98 4-39 (85)
13 d1b09a_ b.29.1.5 (A:) C-reacti 25.7 15 0.0011 26.2 2.0 18 172-189 103-120 (206)
14 d2a2pa1 c.47.1.23 (A:25-144) S 25.6 19 0.0014 25.8 2.6 33 66-99 14-49 (120)
15 d2vmha1 b.18.1.33 (A:906-1050) 24.9 21 0.0015 25.8 2.7 15 174-188 85-99 (145)
16 d2slia1 b.29.1.9 (A:81-276) Le 24.8 19 0.0014 25.1 2.4 18 172-189 120-137 (196)
17 d1hara_ e.8.1.2 (A:) HIV-1 rev 22.2 27 0.002 26.6 3.0 27 162-188 164-192 (216)
18 d1tg7a2 b.18.1.27 (A:667-848) 21.6 20 0.0015 26.5 2.1 14 173-186 89-102 (182)
19 d1ef4a_ a.4.11.1 (A:) RNA poly 20.8 33 0.0024 21.4 2.6 22 73-94 6-29 (55)
No 1
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=98.78 E-value=4.5e-09 Score=76.15 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=29.2
Q ss_pred CceEEEEeccCcCcchhHHHHHHHHHhhCCC
Q 029622 65 GSTVNINFCASCSYRGTAITMKRMLETQFPG 95 (190)
Q Consensus 65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~ 95 (190)
-|+|.|+||..|||...+..|++.|.+.||+
T Consensus 2 kp~I~IeYC~~C~w~~Ra~wlaqeLl~tF~~ 32 (86)
T d2fa8a1 2 KPRIAIRYCTQCNWLLRAGWMAQEILQTFAS 32 (86)
T ss_dssp CCEEEEEEETTTTCHHHHHHHHHHHHHHHGG
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhCCc
Confidence 4789999999999999999999999999987
No 2
>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=78.84 E-value=1.5 Score=31.07 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=33.4
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhH
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~ 115 (190)
.+|+|.... +++..|+++.+.-++++|+++|+-+.. ++..++.|+
T Consensus 2 v~L~v~~ag--s~~~~~~~~~~~Fe~~~P~I~V~~~~~---~~~~~~~~~ 46 (311)
T d2onsa1 2 VKLKVFHAG--SLTEPMKAFKRAFEEKHPNVEVQTEAA---GSAATIRKV 46 (311)
T ss_dssp EEEEEEEEG--GGHHHHHHHHHHHHHHCTTEEEEEEEE---CHHHHHHHH
T ss_pred cEEEEEecc--CcHHHHHHHHHHHHHHCcCcEEEEEeC---CcHHHHHHH
Confidence 356675543 478999999999999999999887654 345666554
No 3
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}
Probab=52.16 E-value=3.6 Score=29.63 Aligned_cols=26 Identities=27% Similarity=0.657 Sum_probs=22.7
Q ss_pred eccCc----CcchhHHHHHHHHHhhCCCeE
Q 029622 72 FCASC----SYRGTAITMKRMLETQFPGID 97 (190)
Q Consensus 72 YC~SC----GY~~~f~e~k~~L~~~yP~i~ 97 (190)
-|.|| +-+.+|+=++.+|..|||+..
T Consensus 18 iCASCV~aPSSkeTyEWLqaal~RKyp~~~ 47 (111)
T d1xg8a_ 18 ICASCVNAPTSKDIYDWLQPLLKRKYPNIS 47 (111)
T ss_dssp CCGGGSSSCCHHHHHHHHHHHHHHHCTTSC
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCc
Confidence 59999 368899999999999999953
No 4
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=36.74 E-value=11 Score=24.68 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=22.3
Q ss_pred CceEEEEe---ccCcCcchhHHHHHHHHHhhCCCeE
Q 029622 65 GSTVNINF---CASCSYRGTAITMKRMLETQFPGID 97 (190)
Q Consensus 65 G~tV~i~Y---C~SCGY~~~f~e~k~~L~~~yP~i~ 97 (190)
+++|.+.+ |.+|- ..-.-++++|++++|++.
T Consensus 34 ~~~v~v~l~GaC~gC~--Tl~~gIe~~L~~~iPei~ 67 (73)
T d1th5a1 34 GPIVKVRLTGPAAVVR--TVRIAVSKKLREKIPSIQ 67 (73)
T ss_dssp TTEEEECCCSSSSSSS--SHHHHHHHHHHHHCTTCS
T ss_pred CCEEEEEecCCCcccc--hHHHHHHHHHHHHCCCcc
Confidence 46788887 66662 222567899999999985
No 5
>d1edqa1 b.1.18.2 (A:24-132) Chitinase A, N-terminal domain N {Serratia marcescens [TaxId: 615]}
Probab=33.70 E-value=11 Score=26.76 Aligned_cols=15 Identities=13% Similarity=-0.080 Sum_probs=12.5
Q ss_pred cEEEEECCeEeeecC
Q 029622 175 AFEVYCNDDLVSDLS 189 (190)
Q Consensus 175 AFEIylNd~lV~S~~ 189 (190)
-..||+||++||+.+
T Consensus 53 ~~~v~~dg~~V~~g~ 67 (109)
T d1edqa1 53 TAKVLLNGKEAWSGP 67 (109)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEEECCEEEEecc
Confidence 368999999999864
No 6
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=31.22 E-value=29 Score=23.22 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=23.7
Q ss_pred CceEEEEe---ccCcCcc-hhH-HHHHHHHHhhCCCeE-Eec
Q 029622 65 GSTVNINF---CASCSYR-GTA-ITMKRMLETQFPGID-VVL 100 (190)
Q Consensus 65 G~tV~i~Y---C~SCGY~-~~f-~e~k~~L~~~yP~i~-V~G 100 (190)
+.+|.+.| |.+|... .+. .-++++|++++|++. |+-
T Consensus 37 ~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~ 78 (88)
T d1xhja_ 37 DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQ 78 (88)
T ss_dssp SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEE
Confidence 45788887 5556433 223 456888999999973 544
No 7
>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=31.06 E-value=38 Score=25.49 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=28.5
Q ss_pred eEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChH
Q 029622 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLP 108 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~ 108 (190)
++++.....-.....|+++.+.-++++|+++|+-+.++..-.
T Consensus 5 ~i~~~~~g~p~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~ 46 (407)
T d1eu8a_ 5 KIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTE 46 (407)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHHSTTCEEEEEECCSSHH
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHCcCeEEEEEEccCchH
Confidence 455555544445566777777778888988888777665544
No 8
>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]}
Probab=30.55 E-value=24 Score=26.49 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=25.3
Q ss_pred eEEEEec-cCcCcchhHHHHHHHHHhhCCCeEEecccC
Q 029622 67 TVNINFC-ASCSYRGTAITMKRMLETQFPGIDVVLANY 103 (190)
Q Consensus 67 tV~i~YC-~SCGY~~~f~e~k~~L~~~yP~i~V~G~nY 103 (190)
||+|.-. ..-.....++++...-++++|+++|+=..|
T Consensus 2 tl~~~~~~~~p~~~~~~~~~~~~F~~~~P~V~v~~~~~ 39 (362)
T d3thia_ 2 TLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDW 39 (362)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHHHHHHCTTSEEEECCC
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHHHHCcCeEEEEEec
Confidence 6666433 333456667788788889999999876554
No 9
>d2vnga1 b.18.1.33 (A:39-209) Uncharacterized protein CPE0329 {Clostridium perfringens [TaxId: 1502]}
Probab=28.62 E-value=16 Score=27.53 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=13.9
Q ss_pred cccEEEEECCeEeeec
Q 029622 173 SGAFEVYCNDDLVSDL 188 (190)
Q Consensus 173 TGAFEIylNd~lV~S~ 188 (190)
|=.||||.||+.+|+.
T Consensus 100 sV~F~V~~DG~~l~~S 115 (171)
T d2vnga1 100 VDKIEVVVDGKVIYST 115 (171)
T ss_dssp ECEEEEEETTEEEEET
T ss_pred eEEEEEEeCCceEeec
Confidence 4479999999999986
No 10
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.57 E-value=65 Score=21.48 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHhhC
Q 029622 79 RGTAITMKRMLETQF 93 (190)
Q Consensus 79 ~~~f~e~k~~L~~~y 93 (190)
..+-.++|+.|+++.
T Consensus 48 ~~TV~~LK~~I~~~~ 62 (100)
T d1uh6a_ 48 DDTIGDLKKLIAAQT 62 (100)
T ss_dssp TSBHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHH
Confidence 557789999998774
No 11
>d2hw4a1 d.322.1.1 (A:5-122) Phosphohistidine phosphatase 1, PHP14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.60 E-value=18 Score=25.79 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCCeEEecc
Q 029622 83 ITMKRMLETQFPGIDVVLA 101 (190)
Q Consensus 83 ~e~k~~L~~~yP~i~V~G~ 101 (190)
+.-+++|+++||+.+|+=+
T Consensus 99 ~~t~eiL~~~ypdy~Itws 117 (118)
T d2hw4a1 99 AISTEKIKAKYPDYEVTWA 117 (118)
T ss_dssp HHHHHHHHHHSTTSEEEEC
T ss_pred HHHHHHHHHHCCCceEEeC
Confidence 6678999999999998744
No 12
>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.37 E-value=39 Score=21.85 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=21.1
Q ss_pred eEEEEeccCcCcchhHHHH----HHHHHhhCCCeEE
Q 029622 67 TVNINFCASCSYRGTAITM----KRMLETQFPGIDV 98 (190)
Q Consensus 67 tV~i~YC~SCGY~~~f~e~----k~~L~~~yP~i~V 98 (190)
+|+|.||...+-...-.++ -.-++.+.|++.|
T Consensus 4 ~l~~~yc~~~~sS~G~R~Fi~~~l~~~~~~NP~v~i 39 (85)
T d1s3aa1 4 EIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPI 39 (85)
T ss_dssp EEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCE
T ss_pred EEEEEEcCCCCCcHHHHHHHHHhHHHHHHHCCCceE
Confidence 6899999999864443333 2234567788764
No 13
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.67 E-value=15 Score=26.21 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=15.1
Q ss_pred ccccEEEEECCeEeeecC
Q 029622 172 SSGAFEVYCNDDLVSDLS 189 (190)
Q Consensus 172 sTGAFEIylNd~lV~S~~ 189 (190)
++|..+||+||+++-+++
T Consensus 103 ~~g~~~lYinG~~~~~~~ 120 (206)
T d1b09a_ 103 ASGIVEFWVDGKPRVRKS 120 (206)
T ss_dssp TTCEEEEEETTEECCCEE
T ss_pred cCCeEEEEECCeEEeeec
Confidence 568899999999987653
No 14
>d2a2pa1 c.47.1.23 (A:25-144) Selenoprotein M {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.62 E-value=19 Score=25.84 Aligned_cols=33 Identities=9% Similarity=0.336 Sum_probs=25.5
Q ss_pred ceEEEEeccCcCcchhHHHHHHHHHhh---CCCeEEe
Q 029622 66 STVNINFCASCSYRGTAITMKRMLETQ---FPGIDVV 99 (190)
Q Consensus 66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~---yP~i~V~ 99 (190)
+.=.++-|.+|.. +.|-|++.+|++. ||++.|.
T Consensus 14 ~rA~lE~C~gCkL-~~~PeVkaFI~ed~p~ypnl~vK 49 (120)
T d2a2pa1 14 ARGRVETCGGCQL-NRLKEVKAFVTEDIQLYHNLVMK 49 (120)
T ss_dssp CEEEEEEETTCCC-STTHHHHHHTTTHHHHBTTEEEE
T ss_pred ceeEEEeCCCccc-ccCHHHHHHHHhhhhhCCceEEE
Confidence 3457889999964 6788999998765 8888765
No 15
>d2vmha1 b.18.1.33 (A:906-1050) Uncharacterized Protein CPF2129 {Clostridium perfringens [TaxId: 1502]}
Probab=24.92 E-value=21 Score=25.78 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=13.0
Q ss_pred ccEEEEECCeEeeec
Q 029622 174 GAFEVYCNDDLVSDL 188 (190)
Q Consensus 174 GAFEIylNd~lV~S~ 188 (190)
=.||||.||+.+|+.
T Consensus 85 V~F~V~~Dg~~l~~S 99 (145)
T d2vmha1 85 ISFEVYLDNEKVFDS 99 (145)
T ss_dssp EEEEEEETTEEEEEC
T ss_pred EEEEEEECCEEEEec
Confidence 359999999999964
No 16
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=24.78 E-value=19 Score=25.12 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=14.9
Q ss_pred ccccEEEEECCeEeeecC
Q 029622 172 SSGAFEVYCNDDLVSDLS 189 (190)
Q Consensus 172 sTGAFEIylNd~lV~S~~ 189 (190)
++|...+|+||+++-+.+
T Consensus 120 ~~~~~~lYvnG~~~~~~~ 137 (196)
T d2slia1 120 ANKQCRLFANGELLATLD 137 (196)
T ss_dssp TTTEEEEEETTEEEEEEE
T ss_pred CCCEEEEEECCeEEEEEe
Confidence 567899999999997653
No 17
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=22.23 E-value=27 Score=26.62 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=17.9
Q ss_pred HHHHHHHhhhcc-c-cEEEEECCeEeeec
Q 029622 162 IGNFLQSFLQSS-G-AFEVYCNDDLVSDL 188 (190)
Q Consensus 162 lgN~ie~~L~sT-G-AFEIylNd~lV~S~ 188 (190)
+.++++...-.+ + .-.+|+||.+|+|+
T Consensus 164 m~~~l~~~~~~~~~~~v~~YlDDIlI~S~ 192 (216)
T d1hara_ 164 MTKILAPFKAANPDIVIYQYMDDLYVGSD 192 (216)
T ss_dssp HHHHHHHHHHHCTTSEEEEETTEEEEEES
T ss_pred HHHHHHHHhhcCCCeEEEEECceEEEccC
Confidence 556665544322 2 34689999999996
No 18
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]}
Probab=21.57 E-value=20 Score=26.46 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=10.8
Q ss_pred cccEEEEECCeEee
Q 029622 173 SGAFEVYCNDDLVS 186 (190)
Q Consensus 173 TGAFEIylNd~lV~ 186 (190)
.-+++||+||+.|=
T Consensus 89 ~~~~~VwlNG~~vG 102 (182)
T d1tg7a2 89 AYGHSIWINETYVG 102 (182)
T ss_dssp TCCEEEEETTEEEE
T ss_pred eeeeEEEECCEEEe
Confidence 44789999998873
No 19
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.84 E-value=33 Score=21.43 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.1
Q ss_pred ccCcC--cchhHHHHHHHHHhhCC
Q 029622 73 CASCS--YRGTAITMKRMLETQFP 94 (190)
Q Consensus 73 C~SCG--Y~~~f~e~k~~L~~~yP 94 (190)
|-+|| ....|++|++.+++..+
T Consensus 6 CFTCGkvia~k~~~y~~~~~~~~~ 29 (55)
T d1ef4a_ 6 CLSCGKPVSAYFNEYQRRVADGED 29 (55)
T ss_dssp CSCTTSCCHHHHHHHHHHHHHTCC
T ss_pred cCCCchhHHHHHHHHHHHHHcCCC
Confidence 88998 66789999999987653
Done!