BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029626
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22300|LET12_SOLLC Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum
GN=LET12 PE=2 SV=1
Length = 426
Score = 189 bits (481), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 91/113 (80%), Positives = 104/113 (92%), Gaps = 1/113 (0%)
Query: 68 WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
WE KCKA+I+ HPLY+QLLSAHVSCLRIATPVDQLP+IDAQL++S++V+AKYS + G+
Sbjct: 158 WEREKCKADILNHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSVLGQGQ 217
Query: 128 -VLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
LDDK+LDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQSLQSLTG
Sbjct: 218 PPLDDKDLDQFMTHYVLLLSSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTG 270
>sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3
PE=1 SV=1
Length = 431
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/129 (73%), Positives = 107/129 (82%), Gaps = 9/129 (6%)
Query: 60 NDNGRAE------DWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRS 113
ND G A W+ + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S
Sbjct: 140 NDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQS 199
Query: 114 RDVLAKYSAV---ANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDL 170
+ V+AKYSA+ A G V DDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++
Sbjct: 200 QHVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEI 259
Query: 171 EQSLQSLTG 179
EQSLQSLTG
Sbjct: 260 EQSLQSLTG 268
>sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1
Length = 427
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/113 (77%), Positives = 103/113 (91%)
Query: 67 DWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANG 126
+W+ + KAEI+ HPLYE LLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYSA+ NG
Sbjct: 161 NWQNARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGNG 220
Query: 127 RVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
V DDKELDQFM +YVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTG
Sbjct: 221 MVGDDKELDQFMRNYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTG 273
>sp|P48001|KNAT4_ARATH Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4
PE=2 SV=3
Length = 393
Score = 183 bits (464), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/118 (74%), Positives = 102/118 (86%), Gaps = 3/118 (2%)
Query: 65 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA 124
AE W+ + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYS +
Sbjct: 115 AERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLE 174
Query: 125 NGRVL---DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
+ L DDKELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQS TG
Sbjct: 175 AAQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTG 232
>sp|Q0J6N4|KNOSD_ORYSJ Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica
GN=OSH45 PE=2 SV=2
Length = 374
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/109 (80%), Positives = 100/109 (91%), Gaps = 1/109 (0%)
Query: 72 KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
+CKAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S+ V+AKYSA+A DD
Sbjct: 107 RCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQGVVAKYSALAAAAAGDD 166
Query: 132 -KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
+ELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQ+LQSLTG
Sbjct: 167 GRELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTG 215
>sp|P48002|KNAT5_ARATH Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5
PE=1 SV=2
Length = 383
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 95/115 (82%), Gaps = 2/115 (1%)
Query: 65 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA 124
EDW + KA I+ HP+YEQLL+AHV+CLR+ATPVDQ+P+IDAQLS+ V AKYS +
Sbjct: 110 GEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTL- 168
Query: 125 NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
G V+D+KELD FM+HYV+LL SFKEQLQ HV VHAMEA+ ACW++EQSLQSLTG
Sbjct: 169 -GVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTG 222
>sp|Q0E3C3|KNOS2_ORYSJ Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica
GN=HOS58 PE=2 SV=2
Length = 313
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD-K 132
KA + HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++ LA SA A +
Sbjct: 43 KAAVAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAASAAAAAGGPSGGE 102
Query: 133 ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
ELD FMTHYVLLL SFKEQLQQHVRVHAMEAVM CW+LEQSLQSLTG
Sbjct: 103 ELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTG 149
>sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7
PE=2 SV=1
Length = 291
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 85/108 (78%)
Query: 72 KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
+ K EI HP+YEQLL+AHV+CLR+ATP+DQLP I+AQLS+S +L Y++ A G D
Sbjct: 28 QLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYHHDR 87
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
ELD F+ YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG
Sbjct: 88 HELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTG 135
>sp|Q94LW4|KNOSB_ORYSJ Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica
GN=HOS59 PE=2 SV=2
Length = 323
Score = 140 bits (353), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 88/117 (75%), Gaps = 7/117 (5%)
Query: 68 WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
WE + KA I HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++ LA +A A
Sbjct: 44 WE--REKAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAA 101
Query: 128 VLDD-----KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
+ELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQ+LQSLTG
Sbjct: 102 AAGGAPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTG 158
>sp|P46606|HD1_BRANA Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1
Length = 294
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 72 KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
+ K EI HP+Y+QLL+AHV+CLR+ATP+DQLP I+AQLS S +L Y++ A G D
Sbjct: 30 QMKGEIATHPMYDQLLAAHVACLRVATPIDQLPIIEAQLSHSHHLLRSYASTAVGFSHHD 89
Query: 132 K-ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
+ ELD F+ YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG
Sbjct: 90 RQELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTG 138
>sp|Q94LW3|KNOS3_ORYSJ Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica
GN=HOS66 PE=2 SV=1
Length = 314
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 82/108 (75%), Gaps = 2/108 (1%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVL--DD 131
K EI HPL EQL++AHV CLR+ATP+D LP IDAQL++S +L Y+A + D
Sbjct: 54 KGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSPHDK 113
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
+ELD F+ Y++LL SF+EQLQQHVRVHA+EAVMAC ++EQSLQ LTG
Sbjct: 114 QELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTG 161
>sp|O04134|KNAP1_MALDO Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1
Length = 398
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 60 NDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAK 119
ND+ E KA+I+ HP Y L+ A++ C R+ P D +P++ ++R +
Sbjct: 120 NDDHSLSSNEVEAIKAKIIAHPQYSNLVEAYMDCQRVGAPSDVVPRLS--VARQEFEARQ 177
Query: 120 YSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
S+ + D ELDQFM Y +L ++E+L + ++ EA+ +E L L
Sbjct: 178 RSSGTSRETSKDPELDQFMEAYYDMLVKYREELTRPIQ----EAMDFMRRIETQLNMLGN 233
Query: 180 N 180
N
Sbjct: 234 N 234
>sp|P46608|HSBH1_SOYBN Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1
Length = 379
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKE 133
KA+I+ HP Y +LL+A+V+C ++ P + + +++ + + + +A + + +D
Sbjct: 125 KAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGGDAAAGSSCIGEDPA 184
Query: 134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT 178
LDQFM Y +L ++++L + ++ EA++ +E ++LT
Sbjct: 185 LDQFMEAYCEMLTKYEQELSKPLK----EAMLFLQRIECQFKNLT 225
>sp|P46639|KNAT1_ARATH Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1
PE=1 SV=1
Length = 398
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA--QLSRSRDVLAKYSAVANGRVLDD 131
KA+I+ HP Y LL A++ C +I P D + +I A Q +R + S A+ R D
Sbjct: 135 KAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSASSR---D 191
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAV 164
ELDQFM Y +L ++E+L + ++ AME +
Sbjct: 192 PELDQFMEAYCDMLVKYREELTRPIQ-EAMEFI 223
>sp|O04135|KNAP2_MALDO Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1
Length = 397
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 69 ETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRV 128
E KA+I+ HP Y LL A++ C R+ P D + ++ ++R + S+ +
Sbjct: 128 EVEAIKAKIIAHPQYSNLLEAYMDCQRVGAPSDVVARLS--VARQEFEARQRSSGTSRET 185
Query: 129 LDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGN 180
D ELDQFM Y +L ++E+L + ++ EA+ +E L L N
Sbjct: 186 SKDPELDQFMEAYYDMLVKYREELTRPIQ----EAMDFMRRIETQLNMLGNN 233
>sp|P24345|KN1_MAIZE Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1
Length = 359
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 54 KNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR- 112
K S+ + A D E +K K I+ HP Y LL+A++ C ++ P P++ A+L+
Sbjct: 87 KAKEPSSSSPYAGDVEAIKAK--IISHPHYYSLLTAYLECNKVGAP----PEVSARLTEI 140
Query: 113 SRDVLAKYSAVANG-RVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLE 171
+++V A+ G + ELDQFM Y +L F+E+L + ++ EA+ +E
Sbjct: 141 AQEVEARQRTALGGLAAATEPELDQFMEAYHEMLVKFREELTRPLQ----EAMEFMRRVE 196
Query: 172 QSLQSLT 178
L SL+
Sbjct: 197 SQLNSLS 203
>sp|Q75LX7|KNOS4_ORYSJ Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica
GN=OSH10 PE=2 SV=1
Length = 337
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 69 ETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRV 128
ET KA+I+ HPLY LL A + C ++ P P++ +LS + + + A R
Sbjct: 58 ETDAIKAKIMSHPLYPALLRAFIDCQKVGAP----PEVVGRLSA---LAGELDSRAEDRY 110
Query: 129 L----DDKELDQFMTHYVLLLYSFKEQLQQHVR 157
L D ELD+FM Y+ +L S++++L + ++
Sbjct: 111 LQGQSSDPELDEFMETYIDMLVSYRQELTRPIQ 143
>sp|Q41330|KN1_SOLLC Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1
Length = 355
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 51 KNNKNNSASNDNGRAEDWETVKC-KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQ 109
+N+ ++S G A E ++ KA+I+ HP LL A++ C ++ P P++ A+
Sbjct: 71 RNHHHDSTETSGGGAGAGEVIEALKAKIIAHPQCSNLLDAYMDCQKVGAP----PEVAAR 126
Query: 110 LSRSRDVLA--KYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAME 162
LS R + ++ + V D ELDQFM Y +L ++E+L + ++ AME
Sbjct: 127 LSAVRQEFEARQRRSLTDRDVSKDPELDQFMEAYYDMLVKYREELTRPLQ-EAME 180
>sp|Q43484|KNOX3_HORVU Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3 PE=1 SV=1
Length = 364
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 15/134 (11%)
Query: 47 EEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKI 106
E K K S+S+ A D E +K K I+ HP Y LL+A++ C ++ P P++
Sbjct: 87 EACAKAAKEPSSSS---YAADVEAIKAK--IISHPHYSSLLAAYLDCQKVGAP----PEV 137
Query: 107 DAQLSR-SRDV-LAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAV 164
A+L+ ++D+ L + +A+ + ELDQFM Y +L ++E+L + ++ EA+
Sbjct: 138 SARLTAVAQDLELRQRTALGGLGTATEPELDQFMEAYHEMLVKYREELTRPLQ----EAM 193
Query: 165 MACWDLEQSLQSLT 178
+E L SL+
Sbjct: 194 EFLRRVETQLNSLS 207
>sp|O80416|KNOSC_ORYSJ Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica
GN=OSH15 PE=2 SV=1
Length = 355
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 69 ETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR- 127
E KA+I+ HP Y LL+A++ C ++ P + L ++ A AK A GR
Sbjct: 87 EAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTA-------TAAKLDARPPGRH 139
Query: 128 VLDDKELDQFMTHYVLLLYSFKEQLQQHV 156
D ELDQFM Y +L ++E+L + +
Sbjct: 140 DARDPELDQFMEAYCNMLAKYREELTRPI 168
>sp|O65034|KNOSC_ORYSI Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica
GN=OSH15 PE=2 SV=2
Length = 355
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 69 ETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR- 127
E KA+I+ HP Y LL+A++ C ++ P + L ++ A AK A GR
Sbjct: 87 EAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTA-------TAAKLDARPPGRH 139
Query: 128 VLDDKELDQFMTHYVLLLYSFKEQLQQHV 156
D ELDQFM Y +L ++E+L + +
Sbjct: 140 DARDPELDQFMEAYCNMLAKYREELTRPI 168
>sp|Q41853|RSH1_MAIZE Homeobox protein rough sheath 1 OS=Zea mays GN=RS1 PE=2 SV=1
Length = 351
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 78 VGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR-VLDDKELDQ 136
V HP Y LL+A++ C ++ P D L ++ A + AK A A GR D ELDQ
Sbjct: 95 VAHPQYSALLAAYLDCQKVGAPPDVLERLTA-------MAAKLDASAAGRHEPRDPELDQ 147
Query: 137 FMTHYVLLLYSFKEQLQQHV 156
FM Y +L ++E+L + +
Sbjct: 148 FMEAYCNMLVKYREELTRPI 167
>sp|Q10ED2|KNOS8_ORYSJ Homeobox protein knotted-1-like 8 OS=Oryza sativa subsp. japonica
GN=OSH43 PE=2 SV=1
Length = 341
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 35/123 (28%)
Query: 73 CKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDK 132
KAEI+ HP Y LL+A++ C ++ P DVL K +AV + LD+
Sbjct: 83 VKAEIMSHPQYSALLAAYLGCKKVGAPP--------------DVLTKLTAVPAAQQLDEA 128
Query: 133 -----------------ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQ 175
+LDQFM Y +L ++E+L++ + +EA +E L
Sbjct: 129 DGHPRRRHEPQRDDDPDQLDQFMDAYCSMLTRYREELERPI----LEAAEFFSRVETQLD 184
Query: 176 SLT 178
SL
Sbjct: 185 SLA 187
>sp|P46609|KNOS6_ORYSJ Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica
GN=OSH1 PE=2 SV=2
Length = 361
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 73 CKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR-SRDV-LAKYSAVANGRVLD 130
KA+I+ HP Y LL+A++ C ++ P P++ A+L+ ++D+ L + +A+
Sbjct: 104 IKAKIISHPHYSSLLAAYLDCQKVGAP----PEVAARLTAVAQDLELRQRTALGVLGAAT 159
Query: 131 DKELDQFMTHYVLLLYSFKEQLQQHVRVHAME 162
+ ELDQFM Y +L ++E+L + ++ AME
Sbjct: 160 EPELDQFMEAYHEMLVKYREELTRPLQ-EAME 190
>sp|Q75LX9|KNOS5_ORYSJ Putative homeobox protein knotted-1-like 5 OS=Oryza sativa subsp.
japonica GN=Os03g0673500 PE=3 SV=1
Length = 337
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLD--- 130
KA+I+ HPLY LL A V C ++ P P++ +LS S V+ + R L
Sbjct: 72 KAKIMSHPLYPSLLRAFVDCKKVGAP----PEVVGRLS-SLAVVTDVPQYSGDRCLPAQQ 126
Query: 131 ---DKELDQFMTHYVLLLYSFKEQLQQHVR 157
D ELDQFM Y +L + ++L + ++
Sbjct: 127 PAADPELDQFMETYCYMLTRYGQELARPIQ 156
>sp|Q9FP29|KNOS1_ORYSJ Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica
GN=OSH6 PE=2 SV=1
Length = 301
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR-SRDVLAKYSAVANGRVLDDK 132
KA+I GHP Y LLSA++ C ++ P P++ + L R+ A G++ D
Sbjct: 44 KAQIAGHPRYPTLLSAYIECRKVGAP----PEVASLLKEIGRERRAGGGGGGAGQIGVDP 99
Query: 133 ELDQFMTHYVLLLYSFKEQLQQ 154
ELD+FM Y +L +KE+L +
Sbjct: 100 ELDEFMEAYCRVLVRYKEELSR 121
>sp|Q7GDL5|KNOSA_ORYSJ Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. japonica
GN=OSH71 PE=2 SV=1
Length = 311
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLD--D 131
KA+I GHP Y LLSA++ C ++ P P++ L A D
Sbjct: 56 KAQIAGHPSYPSLLSAYIECRKVGAP----PEVTTLLEEIGREGRGGGGGATAGGEIGLD 111
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFP 183
ELD+FM Y +L +KE+L + EA + L SL G P
Sbjct: 112 PELDEFMETYCRVLERYKEELTRPFD----EAASFLTGIHTQLASLCGGAPP 159
>sp|A2Y007|KNOSA_ORYSI Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. indica
GN=OSH71 PE=2 SV=2
Length = 311
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLD--D 131
KA+I GHP Y LLSA++ C ++ P P++ L A D
Sbjct: 56 KAQIAGHPSYPSLLSAYIECRKVGAP----PEVTTLLEEIGREGRGGGGGATAGGEIGLD 111
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFP 183
ELD+FM Y +L +KE+L + EA + L SL G P
Sbjct: 112 PELDEFMETYCRVLERYKEELTRPFD----EAASFLTGIHTQLASLCGGAPP 159
>sp|Q9M6D9|STM_BRAOL Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea GN=STM
PE=2 SV=1
Length = 383
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 70 TVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRS--RDVLAKYSAVANGR 127
++ KA+I+ HP Y +LL A+V+C ++ P P++ A+L + A S G
Sbjct: 120 SLLVKAKIMAHPHYHRLLLAYVNCQKVGAP----PEVQARLEETCSSAAAAAASMGPTGS 175
Query: 128 VLDDKELDQFMTHYVLLLYSFKEQLQQHVR 157
+ +D LDQFM Y +L ++++L + +
Sbjct: 176 LGEDPGLDQFMEAYCEMLVKYEQELSKPFK 205
>sp|Q38874|STM_ARATH Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM
PE=1 SV=2
Length = 382
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN--GRVLDD 131
KA+I+ HP Y +LL+A+V+C ++ P P++ A+L + A +A G + +D
Sbjct: 122 KAKIMAHPHYHRLLAAYVNCQKVGAP----PEVVARLEEACSSAAAAAASMGPTGCLGED 177
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVR 157
LDQFM Y +L ++++L + +
Sbjct: 178 PGLDQFMEAYCEMLVKYEQELSKPFK 203
>sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6
PE=1 SV=1
Length = 327
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKE 133
KA+I HP Y +LL A++ C ++ P ++ + ++ R DV K V + D E
Sbjct: 86 KAKIACHPSYPRLLQAYIDCQKVGAP-PEIACLLEEIQRESDVY-KQEVVPSSCFGADPE 143
Query: 134 LDQFMTHYVLLLYSFKEQLQQ 154
LD+FM Y +L +K L +
Sbjct: 144 LDEFMETYCDILVKYKSDLAR 164
>sp|O22299|LET6_SOLLC Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum
GN=LET6 PE=2 SV=1
Length = 355
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 78 VGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQF 137
+ HP Y +LL+A+++C +I P + + +++ + S + S+ G + +D LDQF
Sbjct: 101 MAHPHYHRLLTAYLNCQKIGAPPEVVARLEEICATSATMGRSSSSSGGGIIGEDPALDQF 160
Query: 138 MTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT 178
M Y +L ++++L + + EA++ +E ++LT
Sbjct: 161 MEAYCEMLTKYEQELSKPFK----EAMVFLSRIECQFKALT 197
>sp|Q10EC6|KNOS9_ORYSJ Homeobox protein knotted-1-like 9 OS=Oryza sativa subsp. japonica
GN=Os03g0772100 PE=2 SV=2
Length = 347
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA------QLSRSRDVLAKYSAVANGR 127
KAEI+ HP Y LL+A++ C ++ P D L K+ A QL + +
Sbjct: 82 KAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQQLDAADGHPRRRHEPRRDD 141
Query: 128 VLDDKELDQFM 138
+ D +LDQFM
Sbjct: 142 DVPDHQLDQFM 152
>sp|P46640|KNAT2_ARATH Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2
PE=1 SV=3
Length = 310
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR-----SRDV--LAKYSAVANG 126
K++I HPLY +LL ++ C ++ P+ ++ I ++ R RDV L+ + A
Sbjct: 70 KSKIASHPLYPRLLQTYIDCQKVGAPM-EIACILEEIQRENHVYKRDVAPLSCFGA---- 124
Query: 127 RVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSL-TG 179
D ELD+FM Y +L +K L + EA +E LQ+L TG
Sbjct: 125 ----DPELDEFMETYCDILVKYKTDLARPFD----EATTFINKIEMQLQNLCTG 170
>sp|Q948L5|KNOS7_ORYSJ Homeobox protein knotted-1-like 7 OS=Oryza sativa subsp. japonica
GN=OSH3 PE=2 SV=1
Length = 365
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATP-VDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDK 132
KA IV HP Y +LL+A + C ++ P A R A +A +D
Sbjct: 74 KARIVSHPRYHRLLAAFLDCHKVGCPAEAAEEIAAAARVREARQRAAAAASRMPPAPEDP 133
Query: 133 ELDQFMTHYVLLLYSFKEQLQQ 154
ELDQFM Y LL KE+L +
Sbjct: 134 ELDQFMEDYCKLLVECKEELSR 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,897,138
Number of Sequences: 539616
Number of extensions: 3362758
Number of successful extensions: 58074
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 33133
Number of HSP's gapped (non-prelim): 19179
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)