Query 029626
Match_columns 190
No_of_seqs 128 out of 237
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 02:25:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqq_A Conserved oligomeric go 63.2 12 0.0004 31.7 5.4 49 132-182 75-123 (204)
2 1xc0_A Pardaxin P-4, PA4; BEND 53.7 6.9 0.00023 24.1 1.8 17 74-90 6-22 (33)
3 2w9j_A Signal recognition part 34.3 21 0.00071 26.2 2.1 20 129-148 62-81 (91)
4 1e8o_B SRP14, signal recogniti 33.8 20 0.00068 26.8 2.0 21 128-148 69-89 (106)
5 2i9o_A MHB8A peptide; beta-hai 27.4 51 0.0017 20.6 2.7 10 56-65 12-21 (37)
6 3fp5_A Acyl-COA binding protei 25.2 87 0.003 23.3 4.2 33 134-172 73-105 (106)
7 3syx_A Sprouty-related, EVH1 d 24.6 59 0.002 25.4 3.3 24 161-184 106-129 (130)
8 1cn3_F Fragment of coat protei 23.8 28 0.00094 20.9 1.0 10 58-67 2-11 (29)
9 1sse_B AP-1 like transcription 21.6 27 0.00091 25.8 0.7 13 72-84 36-48 (86)
10 2knj_A Microplusin preprotein; 20.2 64 0.0022 23.9 2.6 27 86-112 12-38 (90)
No 1
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=63.18 E-value=12 Score=31.71 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhcHHHHHHHHHHHHHHHHhhhcCCC
Q 029626 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLF 182 (190)
Q Consensus 132 PELDqFMeaYc~mL~kYKEEL~rP~~~~a~EA~~F~~~IE~QL~sLtg~sp 182 (190)
.|-=+=--.|-.-|-....-|+.|.+ ..|.+.+++++-..|+++|+..|
T Consensus 75 re~v~d~l~YLkkLD~l~~~Lq~h~~--Lse~l~l~kqLs~sLh~mC~~~p 123 (204)
T 2jqq_A 75 QEIIKDVLEYLKKLDEIYGSLRNHSQ--LTEALSLGKRLSKSLHEMCGIEP 123 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSSSH--HHHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhCCCC
Confidence 33333335788889999999999974 88999999999999999999766
No 2
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=53.72 E-value=6.9 Score=24.11 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=14.7
Q ss_pred HHHHhcCCChHHHHHHH
Q 029626 74 KAEIVGHPLYEQLLSAH 90 (190)
Q Consensus 74 KAkI~sHPlYp~LL~Ay 90 (190)
--||++.|||.-||+|-
T Consensus 6 ipkiissplfktllsav 22 (33)
T 1xc0_A 6 IPKIISSPLFKTLLSAV 22 (33)
T ss_dssp HHHHTTTTTHHHHHHHH
T ss_pred hhHHHccHHHHHHHHHH
Confidence 45899999999999874
No 3
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=34.35 E-value=21 Score=26.17 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=16.6
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 029626 129 LDDKELDQFMTHYVLLLYSF 148 (190)
Q Consensus 129 ~~DPELDqFMeaYc~mL~kY 148 (190)
....+|+.|+.+|+.+|..-
T Consensus 62 V~~~~l~~F~~~Y~~v~K~~ 81 (91)
T 2w9j_A 62 VELDYFTDFFQSYAEVXKGQ 81 (91)
T ss_dssp EEGGGHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhC
Confidence 34589999999999998754
No 4
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=33.76 E-value=20 Score=26.83 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=17.0
Q ss_pred CCCChhHHHHHHHHHHHHHHH
Q 029626 128 VLDDKELDQFMTHYVLLLYSF 148 (190)
Q Consensus 128 ~~~DPELDqFMeaYc~mL~kY 148 (190)
+....+|+.|+.+|+.+|..-
T Consensus 69 vV~~~dl~~F~~~Y~~v~K~~ 89 (106)
T 1e8o_B 69 VVSSKEVNKFQMAYSNLLRAN 89 (106)
T ss_dssp EEETTTHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHhc
Confidence 345689999999999998653
No 5
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=27.36 E-value=51 Score=20.64 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=4.1
Q ss_pred CCCCCCCcch
Q 029626 56 NSASNDNGRA 65 (190)
Q Consensus 56 ~~~~~~~~~~ 65 (190)
++||||+|+.
T Consensus 12 eggggggggs 21 (37)
T 2i9o_A 12 EGGGGGGGGS 21 (37)
T ss_dssp CCSCCCCSCS
T ss_pred ecCCCCCcch
Confidence 3344444443
No 6
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=25.17 E-value=87 Score=23.31 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhcHHHHHHHHHHHHH
Q 029626 134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQ 172 (190)
Q Consensus 134 LDqFMeaYc~mL~kYKEEL~rP~~~~a~EA~~F~~~IE~ 172 (190)
-++=|..|+.++.+..+.-.. .||..++.+||.
T Consensus 73 ~eeA~~~YI~~v~~l~~~~~~------~~~~~~~~~le~ 105 (106)
T 3fp5_A 73 KEVAYQKYVEKLLEILKKADT------EESKKYIAEIEA 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCc------HHHHHHHHHHhc
Confidence 467799999999988877333 588888888884
No 7
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=24.57 E-value=59 Score=25.37 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCC
Q 029626 161 MEAVMACWDLEQSLQSLTGNLFPQ 184 (190)
Q Consensus 161 ~EA~~F~~~IE~QL~sLtg~sp~~ 184 (190)
.||..|-+.|.+.|..|.+++|+.
T Consensus 106 ~dA~~F~~~~~~Al~~L~~g~~~~ 129 (130)
T 3syx_A 106 ADARAFDRGIRRAIEDISQGCPES 129 (130)
T ss_dssp HHHHHHHHHHHHHHHGGGSCC---
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Confidence 467777777788888888877763
No 8
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=23.80 E-value=28 Score=20.86 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=4.6
Q ss_pred CCCCCcchhh
Q 029626 58 ASNDNGRAED 67 (190)
Q Consensus 58 ~~~~~~~~~~ 67 (190)
||||+|++++
T Consensus 2 gggggggaas 11 (29)
T 1cn3_F 2 GGGGGGGAAS 11 (29)
T ss_dssp CCCCCSTTTC
T ss_pred CCCCCCcccc
Confidence 4444454443
No 9
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=21.62 E-value=27 Score=25.84 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.1
Q ss_pred HHHHHHhcCCChH
Q 029626 72 KCKAEIVGHPLYE 84 (190)
Q Consensus 72 ~iKAkI~sHPlYp 84 (190)
.+=-+|.+||+|.
T Consensus 36 ~iWd~I~shP~~~ 48 (86)
T 1sse_B 36 EIWDRITTHPKYS 48 (86)
T ss_dssp HHHHHHHTCSCCS
T ss_pred HHHHHHhcCcchh
Confidence 4557999999998
No 10
>2knj_A Microplusin preprotein; antimicrobial peptide, rhipicephalus (boophilus) microplus, antimicrobial protein; NMR {Rhipicephalus microplus}
Probab=20.24 E-value=64 Score=23.88 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=23.0
Q ss_pred HHHHHHhchhccCCCCchhhHHHHHhh
Q 029626 86 LLSAHVSCLRIATPVDQLPKIDAQLSR 112 (190)
Q Consensus 86 LL~AyidC~KVGAPpev~~rLda~l~~ 112 (190)
-|.+-++|.|-.+|++...+||.+.++
T Consensus 12 eL~~~l~Cvr~~a~~~l~~kLd~v~~~ 38 (90)
T 2knj_A 12 ALVTELECIRLRISPETNAAFDNAVQQ 38 (90)
T ss_dssp HHHHHHHHHHTCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467889999999999999999987654
Done!