Query 029626
Match_columns 190
No_of_seqs 128 out of 237
Neff 3.6
Searched_HMMs 13730
Date Tue Mar 26 02:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029626.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029626hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f66c1 a.2.17.3 (C:142-206) V 75.7 1 7.3E-05 30.3 3.0 25 127-151 33-57 (65)
2 d1914a2 d.49.1.1 (A:2001-2097) 30.7 12 0.0009 25.9 2.2 20 129-148 71-90 (97)
3 d1whra_ d.68.7.1 (A:) R3H doma 23.4 39 0.0028 23.8 3.9 35 128-180 11-46 (124)
4 d1pd3a_ a.30.3.1 (A:) Nonstruc 18.6 88 0.0064 19.5 4.4 15 160-174 37-51 (54)
5 d2oz6a2 b.82.3.2 (A:9-142) Cyc 16.8 1.1E+02 0.0077 19.8 4.8 38 130-178 95-132 (134)
6 d1s5qb_ a.59.1.1 (B:) Sin3A {M 16.2 30 0.0022 22.9 1.7 14 160-173 10-23 (89)
7 d1ez3a_ a.47.2.1 (A:) Syntaxin 16.1 1.1E+02 0.0079 20.3 4.8 20 135-154 2-21 (124)
8 d2e9xa1 a.278.1.1 (A:1-144) DN 15.3 42 0.003 24.3 2.5 20 134-153 110-129 (144)
9 d1xoda1 b.55.1.4 (A:10-123) Sp 14.9 53 0.0038 23.2 2.9 17 162-178 96-112 (114)
10 d2f6mb1 a.2.17.2 (B:15-118) Va 13.9 42 0.0031 23.6 2.0 10 132-141 81-90 (104)
No 1
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.70 E-value=1 Score=30.31 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=20.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHH
Q 029626 127 RVLDDKELDQFMTHYVLLLYSFKEQ 151 (190)
Q Consensus 127 ~~~~DPELDqFMeaYc~mL~kYKEE 151 (190)
.+..+.|||+|.+.|.++=+.|+-.
T Consensus 33 ~~~~s~elD~Fi~qYl~~RTeYH~r 57 (65)
T d2f66c1 33 SIDSADDLDQFIKNYLDIRTQYHLR 57 (65)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999643
No 2
>d1914a2 d.49.1.1 (A:2001-2097) Signal recognition particle 14KDa protein, SRP14 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.68 E-value=12 Score=25.89 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.5
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 029626 129 LDDKELDQFMTHYVLLLYSF 148 (190)
Q Consensus 129 ~~DPELDqFMeaYc~mL~kY 148 (190)
..-.+|+.|+.+|+.+|...
T Consensus 71 V~~~~~~~F~~~Y~~v~Ka~ 90 (97)
T d1914a2 71 VSSKEVNKFQMAYSNLLRAN 90 (97)
T ss_dssp EETTSHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhh
Confidence 45679999999999998653
No 3
>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.42 E-value=39 Score=23.83 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHh-hHhhhcHHHHHHHHHHHHHHHHhhhcC
Q 029626 128 VLDDKELDQFMTHYVLLLYSFKEQLQ-QHVRVHAMEAVMACWDLEQSLQSLTGN 180 (190)
Q Consensus 128 ~~~DPELDqFMeaYc~mL~kYKEEL~-rP~~~~a~EA~~F~~~IE~QL~sLtg~ 180 (190)
.+.| |++||. +.|. .|- --.||-+||++|..+...
T Consensus 11 ~~~d--l~~fl~----------~~l~~~~~------dr~fil~lE~~l~~Fi~d 46 (124)
T d1whra_ 11 TGID--LHEFLV----------NTLKKNPR------DRMMLLKLEQEILEFIND 46 (124)
T ss_dssp CCSC--HHHHHH----------HHHHHCTT------THHHHHHHHHHHHHHHHC
T ss_pred cccc--HHHHHH----------HHHHcChH------hHHHHHHHHHHHHHHHhC
Confidence 4455 999964 4453 452 345899999999998753
No 4
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=18.61 E-value=88 Score=19.50 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029626 160 AMEAVMACWDLEQSL 174 (190)
Q Consensus 160 a~EA~~F~~~IE~QL 174 (190)
||.|...+-++|+.+
T Consensus 37 fmqalqllleveqei 51 (54)
T d1pd3a_ 37 FMQALQLLLEVEQEI 51 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 5
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.78 E-value=1.1e+02 Score=19.78 Aligned_cols=38 Identities=11% Similarity=0.247 Sum_probs=26.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhcHHHHHHHHHHHHHHHHhhh
Q 029626 130 DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT 178 (190)
Q Consensus 130 ~DPELDqFMeaYc~mL~kYKEEL~rP~~~~a~EA~~F~~~IE~QL~sLt 178 (190)
.-..++++|+.+.++...+-+.+.+=+ +.+.+++.+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~rl-----------~~~~~~l~~la 132 (134)
T d2oz6a2 95 SYAKFRELSQQDSEILYTLGSQMADRL-----------RKTTRKVGDLA 132 (134)
T ss_dssp EHHHHHHHHHHCHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
T ss_pred eHHHHHHHHHHCHHHHHHHHHHHHHHH-----------HHHHHHHHHcc
Confidence 457888888888888888877776654 45556666553
No 6
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.22 E-value=30 Score=22.95 Aligned_cols=14 Identities=7% Similarity=-0.035 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 029626 160 AMEAVMACWDLEQS 173 (190)
Q Consensus 160 a~EA~~F~~~IE~Q 173 (190)
+.+|+.|+++|-..
T Consensus 10 ~~~A~~yl~kVK~~ 23 (89)
T d1s5qb_ 10 FNHAINYVNKIKNR 23 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 7
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.08 E-value=1.1e+02 Score=20.34 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 029626 135 DQFMTHYVLLLYSFKEQLQQ 154 (190)
Q Consensus 135 DqFMeaYc~mL~kYKEEL~r 154 (190)
|+||+.|-.-...-+.+|..
T Consensus 2 d~~m~~Ff~eV~~Ir~~I~~ 21 (124)
T d1ez3a_ 2 DRFMDEFFEQVEEIRGFIDK 21 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 45666655555444444443
No 8
>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein PSF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.27 E-value=42 Score=24.27 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029626 134 LDQFMTHYVLLLYSFKEQLQ 153 (190)
Q Consensus 134 LDqFMeaYc~mL~kYKEEL~ 153 (190)
=-+|...|+.+|.+|+..+.
T Consensus 110 E~eyf~~Ys~lL~~Y~~~~g 129 (144)
T d2e9xa1 110 EMEWFNNYKRSLATYMRSLG 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34688999999999987653
No 9
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}
Probab=14.87 E-value=53 Score=23.21 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 029626 162 EAVMACWDLEQSLQSLT 178 (190)
Q Consensus 162 EA~~F~~~IE~QL~sLt 178 (190)
||..|.+.|+..|..|.
T Consensus 96 eA~~F~~~v~~ale~l~ 112 (114)
T d1xoda1 96 DARAFDRGIRRAIEDLS 112 (114)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555555555555554
No 10
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.86 E-value=42 Score=23.56 Aligned_cols=10 Identities=20% Similarity=0.693 Sum_probs=5.7
Q ss_pred hhHHHHHHHH
Q 029626 132 KELDQFMTHY 141 (190)
Q Consensus 132 PELDqFMeaY 141 (190)
|.||.||+.|
T Consensus 81 ~~le~F~~~y 90 (104)
T d2f6mb1 81 QSIEAFADTY 90 (104)
T ss_dssp HHHHHHHHHT
T ss_pred CCHHHHHHHH
Confidence 4556666555
Done!