BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029627
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure
pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
Structures
Length = 70
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 40 YRGVRKRRWGKWVSEIREPRKK-TRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDK 98
YRGVR+R WGK+ +EIR+P K R+WLG+F E AA AYD AA+ ++G +A LNFP +
Sbjct: 6 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 65
Query: 99 VEA 101
V +
Sbjct: 66 VNS 68
>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 40 YRGVRKRRWGKWVSEIREPRKK-TRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDK 98
YRGVR+R WGK+ +EIR+P K R+WLG+F E AA AYD AA+ ++G +A LNFP +
Sbjct: 3 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62
Query: 99 V 99
V
Sbjct: 63 V 63
>pdb|1Z3U|A Chain A, Structure Of The Angiopoietin-2 Recptor Binding Domain And
Identification Of Surfaces Involved In Tie2 Recognition
pdb|1Z3U|B Chain B, Structure Of The Angiopoietin-2 Recptor Binding Domain And
Identification Of Surfaces Involved In Tie2 Recognition
pdb|1Z3U|C Chain C, Structure Of The Angiopoietin-2 Recptor Binding Domain And
Identification Of Surfaces Involved In Tie2 Recognition
pdb|1Z3U|D Chain D, Structure Of The Angiopoietin-2 Recptor Binding Domain And
Identification Of Surfaces Involved In Tie2 Recognition
Length = 217
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 126 ISSEKSDVSESDGDDFWGEIELPELMNGGWYSNSCG 161
IS +D S DGD+ + +++ GGW+ ++CG
Sbjct: 137 ISQPGNDFSTKDGDNDKCICKCSQMLTGGWWFDACG 172
>pdb|2GY7|A Chain A, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 216
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 113 IQEAAAKAAHAGLISSEKSDVSESDGDDFWGEIELPELMNGGWYSNSCG 161
++ A IS +D S DGD+ + +++ GGW+ ++CG
Sbjct: 124 LKGLTGTAGKISSISQPGNDFSTKDGDNDKCICKCSQMLTGGWWFDACG 172
>pdb|1Z3S|A Chain A, Angiopoietin-2 Receptor Binding Domain
pdb|1Z3S|B Chain B, Angiopoietin-2 Receptor Binding Domain
Length = 217
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 113 IQEAAAKAAHAGLISSEKSDVSESDGDDFWGEIELPELMNGGWYSNSCG 161
++ A IS +D S DGD+ + +++ GGW+ ++CG
Sbjct: 124 LKGLTGTAGKISSISQPGNDFSTKDGDNDKCICKCSQMLTGGWWFDACG 172
>pdb|2OY0|A Chain A, Crystal Structure Of The West Nile Virus
Methyltransferase
pdb|2OY0|B Chain B, Crystal Structure Of The West Nile Virus
Methyltransferase
Length = 262
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 1 MEQQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRW 48
M ++ +T E +A RK + TGG HPV RG K RW
Sbjct: 14 MTKEEFTRYRKEAIIEVDRSAAKHARKEGNVTGG--HPVSRGTAKLRW 59
>pdb|3LKZ|A Chain A, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
pdb|3LKZ|B Chain B, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
Length = 321
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 1 MEQQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRW 48
M ++ +T E +A RK + TGG HPV RG K RW
Sbjct: 40 MTKEEFTRYRKEAIIEVDRSAAKHARKEGNVTGG--HPVSRGTAKLRW 85
>pdb|2OTP|A Chain A, Crystal Structure Of Immunoglobulin-Like Transcript 1
(Ilt1LIR7LILRA2)
pdb|2OTP|B Chain B, Crystal Structure Of Immunoglobulin-Like Transcript 1
(Ilt1LIR7LILRA2)
Length = 196
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 37/142 (26%)
Query: 40 YRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVP----EMAARAYDVAAYCLKGRKAQLNF 95
Y R+ + WV I+EP K G FP+P E A R + Y ++ +
Sbjct: 35 YHLYRENKSASWVRRIQEPGKN-----GQFPIPSITWEHAGRYH--CQYYSHNHSSEYSD 87
Query: 96 P-----------DKVEALPRPSTRAARDIQ-EAAAKAAHAGLISSEKSDVSESDGDDFWG 143
P + ALP P ++ + ++ A G I ++ G
Sbjct: 88 PLELVVTGAYSKPTLSALPSPVVTLGGNVTLQCVSQVAFDGFILCKE------------G 135
Query: 144 EIELPELMNGGWYSNSCGWTFS 165
E E P+ +N +S++ GW+++
Sbjct: 136 EDEHPQCLNS--HSHARGWSWA 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,510,708
Number of Sequences: 62578
Number of extensions: 206381
Number of successful extensions: 452
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 11
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)