Query 029627
Match_columns 190
No_of_seqs 248 out of 1304
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 02:27:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 6E-26 2.1E-30 158.8 6.0 61 39-99 2-63 (63)
2 1u3e_M HNH homing endonuclease 96.4 0.00011 3.8E-09 58.6 -3.7 69 3-80 78-146 (174)
3 3igm_B PF14_0633 protein; AP2 88.9 0.21 7.2E-06 35.9 2.2 24 35-58 3-27 (77)
4 3jtz_A Integrase; four strande 75.0 6.4 0.00022 28.0 5.5 44 43-86 28-75 (88)
5 1z1b_A Integrase; protein-DNA 68.5 5.9 0.0002 32.5 4.6 42 41-86 14-55 (356)
6 3ju0_A Phage integrase; four s 60.7 14 0.00049 27.2 5.1 44 43-86 28-75 (108)
7 1x60_A Sporulation-specific N- 34.4 22 0.00076 23.6 2.2 23 62-84 46-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 32.9 41 0.0014 22.6 3.4 25 60-84 44-68 (81)
9 2ftc_I Mitochondrial ribosomal 27.1 94 0.0032 23.2 4.8 36 51-88 80-115 (118)
10 1b69_A Protein (integrase); in 22.3 96 0.0033 21.4 3.7 21 38-58 10-30 (69)
11 2bn8_A CEDA, cell division act 21.3 35 0.0012 24.4 1.3 37 38-77 38-74 (87)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=6e-26 Score=158.82 Aligned_cols=61 Identities=56% Similarity=1.030 Sum_probs=57.5
Q ss_pred ceeEEEeCCCCcEEEEEecCCC-CeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 029627 39 VYRGVRKRRWGKWVSEIREPRK-KTRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDKV 99 (190)
Q Consensus 39 ~yRGVr~r~~GkW~AeI~~p~~-~kri~LGtF~T~EeAA~AYD~Aa~~l~G~~A~lNFp~~~ 99 (190)
+||||+++++|||+|+|++|.+ +++||||+|+|+||||+|||.|+++++|.++.||||+++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 5999999999999999999874 799999999999999999999999999999999999863
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=96.44 E-value=0.00011 Score=58.62 Aligned_cols=69 Identities=7% Similarity=-0.053 Sum_probs=51.3
Q ss_pred CCCCCCChhhhhhhhhhhhhhhhcCCCCCCCCCCCCceeEEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHH
Q 029627 3 QQPYTYTEHELTDSATATATAIHRKSSSQTGGTRHPVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYD 80 (190)
Q Consensus 3 ~~p~~~~~~nlr~s~~r~~t~~~r~~~~~~~~~~~s~yRGVr~r~~GkW~AeI~~p~~~kri~LGtF~T~EeAA~AYD 80 (190)
..+.+++.+||++++..++..++..+... ..++||.+...++|.+.|.. . +.++||.|+|.+|||++|.
T Consensus 78 g~k~nn~~~NL~~~t~~eN~~~~~~~~~~------~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 78 GNKDNNLSTNLRWVTQKINVENQMSRGTL------NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp SCTTCCCGGGEEEECHHHHHHHHHHHTCC------CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred CCCCCCCHHHcEECCHHHHhhcccccCcc------cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 45788999999999999997766543321 11467644334668888888 4 5678999999999999964
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.85 E-value=0.21 Score=35.89 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.7
Q ss_pred CCCCceeEEEeC-CCCcEEEEEecC
Q 029627 35 TRHPVYRGVRKR-RWGKWVSEIREP 58 (190)
Q Consensus 35 ~~~s~yRGVr~r-~~GkW~AeI~~p 58 (190)
..+|+|+||++. +.+.|+|.-.+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 467889999887 669999999984
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=75.01 E-value=6.4 Score=27.97 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=32.3
Q ss_pred EEeCCCC--cEEEEEecCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 029627 43 VRKRRWG--KWVSEIREPRKKTRIWLGSFP--VPEMAARAYDVAAYCL 86 (190)
Q Consensus 43 Vr~r~~G--kW~AeI~~p~~~kri~LGtF~--T~EeAA~AYD~Aa~~l 86 (190)
|+..+.| .|+-+.+..++.+++-||.|+ |.++|-...+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4455555 598888886677889999997 6788877776666554
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=68.47 E-value=5.9 Score=32.49 Aligned_cols=42 Identities=17% Similarity=0.033 Sum_probs=30.4
Q ss_pred eEEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 029627 41 RGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCL 86 (190)
Q Consensus 41 RGVr~r~~GkW~AeI~~p~~~kri~LGtF~T~EeAA~AYD~Aa~~l 86 (190)
.||+.++.|.|..+... .|+++.+|. |..+|......+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 35777778899877654 777899996 8888877666554443
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=60.73 E-value=14 Score=27.15 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=31.6
Q ss_pred EEeCCCC--cEEEEEecCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 029627 43 VRKRRWG--KWVSEIREPRKKTRIWLGSFP--VPEMAARAYDVAAYCL 86 (190)
Q Consensus 43 Vr~r~~G--kW~AeI~~p~~~kri~LGtF~--T~EeAA~AYD~Aa~~l 86 (190)
|+..+.| .|+-+.+..++.+++-||.|+ |..+|-...+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4455555 498888886677889999997 6777777666665554
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=34.39 E-value=22 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=18.5
Q ss_pred eEEeecCCCCHHHHHHHHHHHHH
Q 029627 62 TRIWLGSFPVPEMAARAYDVAAY 84 (190)
Q Consensus 62 kri~LGtF~T~EeAA~AYD~Aa~ 84 (190)
-||++|.|.+.++|..+-+....
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 48999999999999888665443
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=32.93 E-value=41 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=19.4
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHH
Q 029627 60 KKTRIWLGSFPVPEMAARAYDVAAY 84 (190)
Q Consensus 60 ~~kri~LGtF~T~EeAA~AYD~Aa~ 84 (190)
.--||.+|-|.+.++|..+-+....
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3358999999999999888665443
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=27.06 E-value=94 Score=23.21 Aligned_cols=36 Identities=17% Similarity=0.061 Sum_probs=29.9
Q ss_pred EEEEEecCCCCeEEeecCCCCHHHHHHHHHHHHHHhcC
Q 029627 51 WVSEIREPRKKTRIWLGSFPVPEMAARAYDVAAYCLKG 88 (190)
Q Consensus 51 W~AeI~~p~~~kri~LGtF~T~EeAA~AYD~Aa~~l~G 88 (190)
|+|.|.. ...-+-++...+++.|..|...|+.+|-+
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999987 66666677768899999999999988743
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=22.32 E-value=96 Score=21.42 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=18.0
Q ss_pred CceeEEEeCCCCcEEEEEecC
Q 029627 38 PVYRGVRKRRWGKWVSEIREP 58 (190)
Q Consensus 38 s~yRGVr~r~~GkW~AeI~~p 58 (190)
.-+.|++++..|+|+..+.+.
T Consensus 10 ~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 10 ILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp CCCTTEEECSSSCEEEEEECT
T ss_pred ccCCCeEEccCCcEEEEEEcC
Confidence 347889999899999999885
No 11
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=21.26 E-value=35 Score=24.35 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=25.0
Q ss_pred CceeEEEeCCCCcEEEEEecCCCCeEEeecCCCCHHHHHH
Q 029627 38 PVYRGVRKRRWGKWVSEIREPRKKTRIWLGSFPVPEMAAR 77 (190)
Q Consensus 38 s~yRGVr~r~~GkW~AeI~~p~~~kri~LGtF~T~EeAA~ 77 (190)
-.||-|..-+ |||+|.+.. +..-..--.|..+|.|-+
T Consensus 38 d~frdvw~lr-gkyvafvl~--ge~frrspafsvpesaqr 74 (87)
T 2bn8_A 38 DSFRDVWMLR-GKYVAFVLM--GESFLRSPAFTVPESAQR 74 (87)
T ss_dssp TTCTTEEEET-TEEEEBCCS--SSCCCBCCCBSSHHHHHH
T ss_pred ccchhheeec-cceEEEEEe--chhhccCCccCCcHHHHH
Confidence 3588886654 999999887 322223356788877765
Done!