BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029629
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2W|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2W|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|1Z2X|A Chain A, Crystal Structure Of Mouse Vps29
pdb|1Z2X|B Chain B, Crystal Structure Of Mouse Vps29
pdb|3PSN|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSN|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+
pdb|3PSO|A Chain A, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
pdb|3PSO|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Zn2+
Length = 192
Score = 256 bits (653), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 114/182 (62%), Positives = 149/182 (81%)
Query: 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61
+LVL +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL KE +DYLK+L D+H+ R
Sbjct: 11 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 70
Query: 62 GEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK 121
G++DE+ YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+
Sbjct: 71 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE 130
Query: 122 AYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK 181
A++HE INPGSATGAY++ ++ PSFVLMDI VV YVY+LI +VKV++I++K
Sbjct: 131 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK 190
Query: 182 KT 183
K+
Sbjct: 191 KS 192
>pdb|1W24|A Chain A, Crystal Structure Of Human Vps29
Length = 182
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 114/181 (62%), Positives = 148/181 (81%)
Query: 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61
+LVL +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL KE +DYLK+L D+H+ R
Sbjct: 1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60
Query: 62 GEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK 121
G++DE+ YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+
Sbjct: 61 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE 120
Query: 122 AYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK 181
A++HE INPGSATGAY++ ++ PSFVLMDI VV YVY+LI +VKV++I++K
Sbjct: 121 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK 180
Query: 182 K 182
K
Sbjct: 181 K 181
>pdb|2R17|A Chain A, Functional Architecture Of The Retromer Cargo-Recognition
Complex
pdb|2R17|B Chain B, Functional Architecture Of The Retromer Cargo-Recognition
Complex
Length = 183
Score = 245 bits (626), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 141/175 (80%)
Query: 8 GDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDED 67
GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL KE +DYLK+L D+H+ RG++DE+
Sbjct: 8 GDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDEN 67
Query: 68 SRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEG 127
YPE K +T+GQFK+G+ HGHQVIPWGD SLA+LQRQ DVDIL++GHTH+F+A++HE
Sbjct: 68 LNYPEQKVVTVGQFKIGLIHGHQVIPWGDXASLALLQRQFDVDILISGHTHKFEAFEHEN 127
Query: 128 GVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 182
INPGSATGAY++ ++ PSFVL DI VV YVY+LI +VKV++I++KK
Sbjct: 128 KFYINPGSATGAYNALETNIIPSFVLXDIQASTVVTYVYQLIGDDVKVERIEYKK 182
>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
pdb|2A22|B Chain B, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
Length = 215
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 124/189 (65%), Gaps = 9/189 (4%)
Query: 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRG 62
LVL IGDL IP+ A +LP F+ +L KI +++CTGN+ +E + LK++ ++++ G
Sbjct: 27 LVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCSQEYVEMLKNITKNVYIVSG 86
Query: 63 EYDE---------DSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILV 113
+ D + +PE + IG+FK+G+ HG+QV+PW D SL QR+LD DILV
Sbjct: 87 DLDSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILV 146
Query: 114 TGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEV 173
TGHTH+ + ++ G + +NPG+ATGA+S+ T D PSF+LM + G +VV+YVY+L DG+
Sbjct: 147 TGHTHKLRVFEKNGKLFLNPGTATGAFSALTPDAPPSFMLMALQGNKVVLYVYDLRDGKT 206
Query: 174 KVDKIDFKK 182
V +F K
Sbjct: 207 NVAMSEFSK 215
>pdb|2KKN|A Chain A, Solution Nmr Structure Of Themotoga Maritima Protein
Tm1076: Northeast Structural Genomics Consortium Target
Vt57
Length = 178
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 5 LAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEY 64
L I D H+P R + LP + + L + +I G+ + L+ + + G
Sbjct: 26 LLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDLDTVILLEKFSKEFYGVHGNM 83
Query: 65 DE---DSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK 121
D P +K L + +G+CHG PW D L + + +++ GHTH+ +
Sbjct: 84 DYPDVKEHLPFSKVLLVEGVTIGMCHGWGA-PWDLKDRLLKVFNE-KPQVILFGHTHEPE 141
Query: 122 AYKHEGGVVINPGS-ATGAYSSFTFD 146
G +NPGS A G+Y+ D
Sbjct: 142 DTVKAGVRFLNPGSLAEGSYAVLELD 167
>pdb|3CK2|A Chain A, Crystal Structure Of Conserved Uncharacterized Protein
(Predicted Phosphoesterase Cog0622) From Streptococcus
Pneumoniae Tigr4
Length = 176
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 30 GKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGH 89
GK+ + G+ ++ L + V +G D + YPE +G K+ HGH
Sbjct: 31 GKVDAVFHNGDSELRPD----SPLWEGIRVVKGNXDFYAGYPERLVTELGSTKIIQTHGH 86
Query: 90 QVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSAT 137
+ L ++ + I + GH H A+ + +NPGS +
Sbjct: 87 LFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGKILFLNPGSIS 134
>pdb|3QFM|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFM|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFN|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFN|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFO|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
pdb|3QFO|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
Length = 270
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 78 IGQFKLGICH-------GHQVIPWGDLDSLAMLQRQLDVDILVTGHTH-QFKAYKHEGGV 129
G +GI H G ++I G + L DI V GH H Q Y G +
Sbjct: 127 FGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYGHIHQQLLRYGTGGQL 186
Query: 130 VINPGSATGAY---SSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVD 176
++NPGS + + D+ +++++ D +V + +D +V +
Sbjct: 187 IVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMDFRRVDYDVAAE 236
>pdb|2QR4|A Chain A, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
pdb|2QR4|B Chain B, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
Length = 587
Score = 30.0 bits (66), Expect = 0.86, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 129 VVINPGSATGAYSSFTFDVNPSFVL 153
VV N G +GAYSS ++D NP +L
Sbjct: 331 VVENKGKRSGAYSSGSYDTNPYILL 355
>pdb|2AHD|A Chain A, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|B Chain B, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|C Chain C, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|D Chain D, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
Length = 165
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 65 DEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYK 124
+E++ + ++ I K I HGH L M + D+++ GHTH+ +
Sbjct: 75 NEENIIDDFISVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEE 128
Query: 125 HEGGVVINPGSATG 138
+ +VINPG G
Sbjct: 129 VDDVLVINPGECCG 142
>pdb|1S3L|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3L|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
Length = 190
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 75 TLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPG 134
++ I K I HGH L M + D+++ GHTH+ + + +VINPG
Sbjct: 110 SVEIDDLKFFITHGHH------QSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPG 163
Query: 135 SATG 138
G
Sbjct: 164 ECCG 167
>pdb|3QFK|A Chain A, 2.05 Angstrom Crystal Structure Of Putative
5'-Nucleotidase From Staphylococcus Aureus In Complex
With Alpha-Ketoglutarate
Length = 527
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 108 DVDILVTGHTHQFKAYKHEGGVVINPGS 135
D+DI +TGH H+ A + + VI PG+
Sbjct: 239 DIDIFITGHQHRQIAERFKQTAVIQPGT 266
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 64 YDEDSRYPETKTLTIGQFKLGICHGHQVI 92
Y ED+ + + TIG+ LGIC+G Q++
Sbjct: 81 YAEDAPWFDPAIFTIGKPVLGICYGMQMM 109
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 145 FDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTATTR 187
FDVN + +L D + LR VY+L D E+ + ++ + ++T
Sbjct: 298 FDVNKANILGD-NFLRSAYIVYDLDDNEISIAQVKYTSASSTS 339
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 64 YDEDSRYPETKTLTIGQFKLGICHGHQVI 92
Y ED+ + + TIG+ LGIC+G Q++
Sbjct: 86 YAEDAPWFDPAIFTIGKPVLGICYGMQMM 114
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 94 WGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVIN 132
W D SL ++Q+Q +D+L+TGH Q + G ++
Sbjct: 287 WYDAQSLNLIQQQ--IDVLMTGHAWQQQGMLTRLGAIVQ 323
>pdb|1SU1|A Chain A, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|B Chain B, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|C Chain C, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
pdb|1SU1|D Chain D, Structural And Biochemical Characterization Of Yfce, A
Phosphoesterase From E. Coli
Length = 208
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 82 KLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYS 141
+L + HGH P ++L L + D+LV GHTH A + NPGS
Sbjct: 124 RLFLTHGHLFGP----ENLPALNQN---DVLVYGHTHLPVAEQRGEIFHFNPGSV----- 171
Query: 142 SFTFDVNP-SFVLMDIDGLRVVVYVYELIDGEVKVD 176
S NP S+ ++D D L V+ + I +V ++
Sbjct: 172 SIPKGGNPASYGMLDNDVLSVIALNDQSIIAQVAIN 207
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 35 IICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVI 92
+I G+ ++EV + R +D D+ P+ + + G LGIC+G Q++
Sbjct: 27 LILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGXQLL 84
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 35 IICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVI 92
+I G+ ++EV + R +D D+ P+ + + G LGIC+G Q++
Sbjct: 27 LILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLL 84
>pdb|2EX1|A Chain A, Crystal Structure Of Mutifunctional Sialyltransferase From
Pasteurella Multocida With Cmp Bound
Length = 399
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 22/71 (30%)
Query: 31 KIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQ 90
KI HII T N +K D L + P + V R +LGI Q
Sbjct: 341 KISHIIFTSNKQVKSKEDALNN--PYVKVMR--------------------RLGIIDASQ 378
Query: 91 VIPWGDLDSLA 101
VI W L L
Sbjct: 379 VIFWDSLKQLG 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,992,484
Number of Sequences: 62578
Number of extensions: 254132
Number of successful extensions: 544
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 23
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)