Query 029629
Match_columns 190
No_of_seqs 213 out of 1620
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 15:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07394 MPP_Vps29 Homo sapiens 100.0 1.4E-38 3E-43 237.5 24.0 178 3-180 1-178 (178)
2 COG0622 Predicted phosphoester 100.0 4.5E-35 9.8E-40 215.8 19.4 165 1-172 1-169 (172)
3 TIGR00040 yfcE phosphoesterase 100.0 1.3E-32 2.8E-37 201.9 19.0 155 2-163 1-157 (158)
4 KOG3325 Membrane coat complex 100.0 1.2E-31 2.5E-36 187.6 20.7 181 2-182 1-182 (183)
5 PRK09453 phosphodiesterase; Pr 100.0 7.2E-30 1.6E-34 191.5 17.2 153 2-172 1-174 (182)
6 cd00841 MPP_YfcE Escherichia c 100.0 2.3E-29 5E-34 183.9 15.6 151 3-165 1-154 (155)
7 PF12850 Metallophos_2: Calcin 100.0 1.4E-27 3.1E-32 174.0 15.7 147 2-159 1-156 (156)
8 cd07388 MPP_Tt1561 Thermus the 99.9 8.8E-22 1.9E-26 151.3 16.4 147 2-162 5-222 (224)
9 PRK05340 UDP-2,3-diacylglucosa 99.9 1.4E-21 3E-26 152.7 15.9 152 2-164 1-236 (241)
10 cd07379 MPP_239FB Homo sapiens 99.9 1.3E-21 2.9E-26 139.8 12.5 114 3-134 1-135 (135)
11 COG2129 Predicted phosphoester 99.9 1.3E-21 2.8E-26 147.2 12.8 153 1-166 3-224 (226)
12 PRK11148 cyclic 3',5'-adenosin 99.9 9.9E-21 2.1E-25 150.6 16.4 173 2-174 15-267 (275)
13 cd07400 MPP_YydB Bacillus subt 99.9 4.9E-21 1.1E-25 138.1 12.3 116 4-135 1-144 (144)
14 TIGR00583 mre11 DNA repair pro 99.9 2.6E-20 5.6E-25 154.2 17.2 78 106-183 226-308 (405)
15 TIGR01854 lipid_A_lpxH UDP-2,3 99.8 7.9E-20 1.7E-24 141.9 14.7 134 4-137 1-218 (231)
16 cd07402 MPP_GpdQ Enterobacter 99.8 3.3E-20 7.2E-25 144.5 11.4 155 3-157 1-236 (240)
17 COG2908 Uncharacterized protei 99.8 6.6E-20 1.4E-24 139.4 11.2 147 5-162 1-230 (237)
18 cd07398 MPP_YbbF-LpxH Escheric 99.8 1.2E-19 2.6E-24 139.3 12.0 132 5-136 1-217 (217)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.8 3.1E-19 6.7E-24 133.7 11.9 126 4-134 1-188 (188)
20 cd07395 MPP_CSTP1 Homo sapiens 99.8 6.1E-18 1.3E-22 133.6 17.8 163 2-168 5-262 (262)
21 cd07424 MPP_PrpA_PrpB PrpA and 99.8 2.1E-18 4.6E-23 131.8 12.0 132 2-138 1-198 (207)
22 cd07403 MPP_TTHA0053 Thermus t 99.8 2.1E-18 4.5E-23 122.4 11.1 110 5-135 1-123 (129)
23 PRK09968 serine/threonine-spec 99.8 1.5E-18 3.3E-23 133.5 11.1 130 3-137 16-208 (218)
24 cd00840 MPP_Mre11_N Mre11 nucl 99.8 1.7E-18 3.7E-23 133.1 9.5 136 3-138 1-219 (223)
25 cd07396 MPP_Nbla03831 Homo sap 99.8 5.5E-17 1.2E-21 128.6 17.1 156 2-162 1-265 (267)
26 cd07393 MPP_DR1119 Deinococcus 99.8 2.6E-17 5.6E-22 127.9 13.7 137 4-140 1-230 (232)
27 PF14582 Metallophos_3: Metall 99.8 1.6E-17 3.6E-22 125.1 11.9 148 3-163 7-252 (255)
28 PHA02546 47 endonuclease subun 99.7 1.9E-17 4.2E-22 135.3 13.0 168 2-179 1-243 (340)
29 cd07383 MPP_Dcr2 Saccharomyces 99.7 2.4E-17 5.1E-22 125.2 11.5 137 2-138 3-194 (199)
30 PRK11340 phosphodiesterase Yae 99.7 7.9E-17 1.7E-21 127.9 13.9 66 2-67 50-125 (271)
31 cd07390 MPP_AQ1575 Aquifex aeo 99.7 3.6E-17 7.9E-22 121.1 9.7 120 5-135 2-151 (168)
32 cd07423 MPP_PrpE Bacillus subt 99.7 8.9E-17 1.9E-21 125.0 12.3 132 2-137 1-210 (234)
33 PRK11439 pphA serine/threonine 99.7 5.5E-17 1.2E-21 125.0 9.5 131 2-137 17-208 (218)
34 cd07404 MPP_MS158 Microscilla 99.7 6E-17 1.3E-21 119.5 8.7 128 4-133 1-163 (166)
35 cd07397 MPP_DevT Myxococcus xa 99.7 1.9E-16 4.1E-21 122.3 10.5 62 2-68 1-64 (238)
36 PRK04036 DNA polymerase II sma 99.7 1.9E-15 4.2E-20 129.1 17.6 158 2-160 244-496 (504)
37 COG0420 SbcD DNA repair exonuc 99.7 1.1E-16 2.4E-21 133.2 9.6 158 2-160 1-252 (390)
38 PF00149 Metallophos: Calcineu 99.7 1.6E-16 3.4E-21 115.5 7.2 119 2-120 1-200 (200)
39 cd07399 MPP_YvnB Bacillus subt 99.7 2.2E-15 4.7E-20 115.7 13.4 152 2-160 1-203 (214)
40 cd07378 MPP_ACP5 Homo sapiens 99.7 5.1E-15 1.1E-19 117.7 15.8 168 2-169 1-276 (277)
41 PRK10966 exonuclease subunit S 99.7 1.5E-15 3.3E-20 126.6 12.9 67 108-177 220-289 (407)
42 TIGR03729 acc_ester putative p 99.7 9.8E-16 2.1E-20 119.5 10.3 65 3-67 1-74 (239)
43 cd00839 MPP_PAPs purple acid p 99.6 6.9E-14 1.5E-18 112.1 20.7 176 2-180 5-292 (294)
44 cd07385 MPP_YkuE_C Bacillus su 99.6 1.9E-15 4.2E-20 116.3 9.6 67 2-68 2-77 (223)
45 cd07386 MPP_DNA_pol_II_small_a 99.6 8.3E-15 1.8E-19 114.6 13.1 134 5-138 2-221 (243)
46 TIGR00024 SbcD_rel_arch putati 99.6 1.5E-14 3.2E-19 111.7 11.2 109 3-123 16-149 (225)
47 cd00838 MPP_superfamily metall 99.6 2.2E-14 4.7E-19 100.2 10.4 111 5-134 1-131 (131)
48 COG1409 Icc Predicted phosphoh 99.6 4.5E-14 9.8E-19 112.5 13.1 165 2-168 1-245 (301)
49 TIGR00619 sbcd exonuclease Sbc 99.6 7.9E-15 1.7E-19 115.3 7.9 66 2-67 1-88 (253)
50 cd07391 MPP_PF1019 Pyrococcus 99.6 7.9E-15 1.7E-19 109.0 6.7 107 5-124 1-137 (172)
51 KOG2310 DNA repair exonuclease 99.6 9.2E-14 2E-18 115.7 13.5 180 2-185 14-320 (646)
52 cd08165 MPP_MPPE1 human MPPE1 99.5 5.8E-14 1.3E-18 102.7 8.0 124 5-138 1-153 (156)
53 COG4186 Predicted phosphoester 99.5 2.5E-13 5.3E-18 96.6 10.0 122 1-122 3-150 (186)
54 cd07425 MPP_Shelphs Shewanella 99.5 1.3E-13 2.9E-18 105.4 8.1 127 5-136 1-198 (208)
55 PLN02533 probable purple acid 99.5 1.4E-11 3E-16 103.6 20.7 182 2-187 140-423 (427)
56 cd07401 MPP_TMEM62_N Homo sapi 99.5 8.8E-13 1.9E-17 103.9 11.5 64 4-67 2-89 (256)
57 cd07384 MPP_Cdc1_like Saccharo 99.4 2.2E-13 4.7E-18 101.1 7.0 124 5-138 1-168 (171)
58 PRK13625 bis(5'-nucleosyl)-tet 99.4 3.6E-12 7.8E-17 99.8 12.7 146 2-160 1-226 (245)
59 PRK00166 apaH diadenosine tetr 99.4 2.6E-12 5.5E-17 101.9 10.9 64 2-67 1-69 (275)
60 KOG1432 Predicted DNA repair e 99.3 8.9E-11 1.9E-15 93.5 15.9 72 103-175 294-368 (379)
61 COG1408 Predicted phosphohydro 99.3 1.6E-11 3.6E-16 97.7 11.8 66 2-68 45-119 (284)
62 COG1311 HYS2 Archaeal DNA poly 99.3 6.4E-11 1.4E-15 98.3 14.8 166 2-175 226-477 (481)
63 PTZ00422 glideosome-associated 99.3 1.3E-10 2.9E-15 95.7 16.1 82 99-180 239-329 (394)
64 cd08166 MPP_Cdc1_like_1 unchar 99.2 1.7E-11 3.8E-16 92.0 6.6 104 23-128 34-155 (195)
65 cd00144 MPP_PPP_family phospho 99.2 8.6E-11 1.9E-15 90.6 10.1 130 5-137 1-212 (225)
66 COG1768 Predicted phosphohydro 99.2 8.8E-11 1.9E-15 85.7 9.4 120 2-121 1-200 (230)
67 cd00845 MPP_UshA_N_like Escher 99.2 9.1E-10 2E-14 86.4 14.2 136 2-138 1-226 (252)
68 TIGR00668 apaH bis(5'-nucleosy 99.2 1.4E-10 3.1E-15 91.5 9.5 64 2-67 1-69 (279)
69 COG1407 Predicted ICC-like pho 99.2 2.9E-10 6.2E-15 87.2 10.2 106 3-121 21-156 (235)
70 cd07387 MPP_PolD2_C PolD2 (DNA 99.1 1.2E-08 2.5E-13 80.2 17.2 150 3-161 1-252 (257)
71 cd07410 MPP_CpdB_N Escherichia 99.1 4.5E-09 9.8E-14 83.7 15.1 37 102-138 211-249 (277)
72 cd07406 MPP_CG11883_N Drosophi 99.1 4.9E-09 1.1E-13 82.7 14.6 136 2-138 1-225 (257)
73 cd07422 MPP_ApaH Escherichia c 99.1 4.1E-10 9E-15 88.5 8.2 62 4-67 1-67 (257)
74 KOG2679 Purple (tartrate-resis 99.1 2.1E-09 4.6E-14 83.3 11.8 173 2-174 44-323 (336)
75 cd08163 MPP_Cdc1 Saccharomyces 99.0 2.8E-09 6.1E-14 84.0 10.1 41 27-67 41-97 (257)
76 cd08164 MPP_Ted1 Saccharomyces 99.0 2E-09 4.4E-14 80.8 8.8 89 27-125 40-161 (193)
77 cd07408 MPP_SA0022_N Staphyloc 99.0 1.1E-08 2.4E-13 80.6 13.5 65 2-68 1-83 (257)
78 PHA02239 putative protein phos 99.0 7.7E-10 1.7E-14 86.0 5.8 63 2-67 1-73 (235)
79 smart00156 PP2Ac Protein phosp 98.9 8E-08 1.7E-12 76.3 15.2 63 2-67 28-99 (271)
80 TIGR03767 P_acnes_RR metalloph 98.9 5.6E-08 1.2E-12 81.8 13.4 65 98-170 369-446 (496)
81 cd07411 MPP_SoxB_N Thermus the 98.9 2.5E-07 5.4E-12 73.3 16.3 32 107-138 206-240 (264)
82 cd00842 MPP_ASMase acid sphing 98.9 2.2E-08 4.7E-13 80.5 10.0 38 30-67 67-122 (296)
83 cd07412 MPP_YhcR_N Bacillus su 98.9 2.1E-07 4.6E-12 74.6 15.6 32 107-138 228-262 (288)
84 PRK09419 bifunctional 2',3'-cy 98.8 1.1E-07 2.4E-12 89.1 15.0 64 2-67 661-736 (1163)
85 KOG1378 Purple acid phosphatas 98.8 4.9E-07 1.1E-11 75.3 16.9 182 2-186 148-441 (452)
86 cd07405 MPP_UshA_N Escherichia 98.8 8.5E-07 1.9E-11 71.0 17.6 66 2-68 1-88 (285)
87 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.7 8.3E-08 1.8E-12 75.8 9.8 62 4-67 1-86 (262)
88 cd07414 MPP_PP1_PPKL PP1, PPKL 98.7 6.2E-07 1.3E-11 72.0 13.8 62 3-67 51-121 (293)
89 cd07416 MPP_PP2B PP2B, metallo 98.7 9E-07 2E-11 71.5 14.5 62 3-67 44-114 (305)
90 cd07417 MPP_PP5_C PP5, C-termi 98.7 8.4E-07 1.8E-11 71.9 14.2 62 3-67 61-132 (316)
91 cd07413 MPP_PA3087 Pseudomonas 98.7 3.5E-08 7.7E-13 76.2 6.0 60 5-67 2-76 (222)
92 PTZ00480 serine/threonine-prot 98.7 1.4E-06 3.1E-11 70.5 14.8 62 3-67 60-130 (320)
93 cd07415 MPP_PP2A_PP4_PP6 PP2A, 98.6 1.9E-06 4.1E-11 68.9 14.2 62 3-67 43-113 (285)
94 cd07380 MPP_CWF19_N Schizosacc 98.6 2.1E-07 4.5E-12 67.5 7.9 99 5-119 1-121 (150)
95 cd07421 MPP_Rhilphs Rhilph pho 98.6 7.5E-08 1.6E-12 76.5 5.6 62 3-67 3-80 (304)
96 PRK09558 ushA bifunctional UDP 98.6 3.3E-06 7.1E-11 73.6 15.8 66 2-68 35-122 (551)
97 cd07420 MPP_RdgC Drosophila me 98.6 3.2E-07 6.9E-12 74.3 8.2 63 3-67 52-123 (321)
98 cd07407 MPP_YHR202W_N Saccharo 98.5 6E-06 1.3E-10 66.0 14.9 31 108-138 218-250 (282)
99 PTZ00239 serine/threonine prot 98.5 2.1E-06 4.6E-11 69.2 12.3 62 3-67 44-114 (303)
100 cd07419 MPP_Bsu1_C Arabidopsis 98.5 7.6E-06 1.6E-10 66.3 15.0 62 3-67 49-127 (311)
101 PTZ00244 serine/threonine-prot 98.5 5.2E-06 1.1E-10 66.7 13.2 61 4-67 54-123 (294)
102 cd07409 MPP_CD73_N CD73 ecto-5 98.5 9.2E-06 2E-10 65.0 14.2 66 2-68 1-95 (281)
103 cd07418 MPP_PP7 PP7, metalloph 98.4 1.3E-06 2.8E-11 72.0 7.3 62 3-67 67-138 (377)
104 PRK09419 bifunctional 2',3'-cy 98.4 1.8E-05 3.9E-10 74.5 15.5 37 102-138 261-312 (1163)
105 PRK11907 bifunctional 2',3'-cy 98.3 3.7E-05 8E-10 69.4 16.0 66 2-68 116-214 (814)
106 PRK09418 bifunctional 2',3'-cy 98.3 4.3E-05 9.4E-10 68.8 15.1 33 106-138 275-307 (780)
107 cd07382 MPP_DR1281 Deinococcus 98.3 3.4E-05 7.3E-10 60.8 12.9 133 3-137 1-199 (255)
108 TIGR01390 CycNucDiestase 2',3' 98.3 4.1E-05 8.8E-10 67.7 14.6 33 106-138 226-272 (626)
109 TIGR01530 nadN NAD pyrophospha 98.2 3.7E-05 8.1E-10 67.0 12.9 66 2-68 1-95 (550)
110 TIGR00282 metallophosphoestera 98.2 7E-05 1.5E-09 59.3 12.7 65 2-67 1-71 (266)
111 KOG3662 Cell division control 98.2 5.4E-06 1.2E-10 68.6 6.5 67 2-68 49-145 (410)
112 cd08162 MPP_PhoA_N Synechococc 98.1 7E-05 1.5E-09 60.8 12.7 65 2-67 1-91 (313)
113 COG0737 UshA 5'-nucleotidase/2 98.1 1.3E-05 2.7E-10 69.5 8.4 66 2-68 27-116 (517)
114 PRK09420 cpdB bifunctional 2', 98.1 0.00013 2.8E-09 64.8 14.2 34 105-138 248-295 (649)
115 PF04042 DNA_pol_E_B: DNA poly 97.4 0.00053 1.2E-08 52.2 6.8 86 4-90 1-138 (209)
116 KOG2863 RNA lariat debranching 97.3 0.00049 1.1E-08 55.9 5.7 64 2-67 1-88 (456)
117 KOG0374 Serine/threonine speci 97.3 0.0068 1.5E-07 49.5 12.3 63 4-68 61-132 (331)
118 KOG3947 Phosphoesterases [Gene 97.3 0.001 2.2E-08 52.3 6.6 57 2-67 62-126 (305)
119 COG1692 Calcineurin-like phosp 97.2 0.062 1.3E-06 41.8 16.7 85 2-87 1-114 (266)
120 KOG0373 Serine/threonine speci 96.7 0.0027 5.8E-08 48.5 4.5 61 4-67 48-117 (306)
121 KOG0372 Serine/threonine speci 96.7 0.0038 8.3E-08 48.4 5.1 62 4-68 45-115 (303)
122 TIGR03768 RPA4764 metallophosp 96.4 0.0074 1.6E-07 51.1 5.8 63 99-169 389-464 (492)
123 KOG3770 Acid sphingomyelinase 96.3 0.015 3.2E-07 50.4 7.0 38 31-68 210-264 (577)
124 KOG3818 DNA polymerase epsilon 96.2 0.29 6.2E-06 41.3 13.6 64 3-68 284-370 (525)
125 PF13277 YmdB: YmdB-like prote 96.0 0.15 3.2E-06 40.0 10.6 126 5-131 1-190 (253)
126 KOG0375 Serine-threonine phosp 95.6 0.014 3.1E-07 47.7 3.7 61 4-67 90-159 (517)
127 PTZ00235 DNA polymerase epsilo 95.6 0.039 8.5E-07 44.1 6.0 65 2-68 28-123 (291)
128 TIGR03768 RPA4764 metallophosp 95.5 0.087 1.9E-06 44.9 8.2 17 28-44 96-112 (492)
129 KOG0371 Serine/threonine prote 95.3 0.022 4.7E-07 44.6 3.6 61 4-67 62-131 (319)
130 smart00854 PGA_cap Bacterial c 93.1 0.37 8.1E-06 37.5 6.5 52 80-131 174-229 (239)
131 KOG4419 5' nucleotidase [Nucle 92.4 0.81 1.8E-05 40.0 7.9 67 2-68 43-135 (602)
132 PHA03008 hypothetical protein; 91.1 0.84 1.8E-05 34.4 5.9 56 80-135 161-222 (234)
133 cd07381 MPP_CapA CapA and rela 90.7 0.82 1.8E-05 35.4 6.0 53 79-131 175-231 (239)
134 KOG0376 Serine-threonine phosp 89.9 1.1 2.3E-05 38.4 6.1 64 2-67 214-286 (476)
135 PF09587 PGA_cap: Bacterial ca 89.1 1.6 3.4E-05 34.2 6.4 57 79-135 184-245 (250)
136 PRK01395 V-type ATP synthase s 88.1 0.63 1.4E-05 31.5 3.1 64 1-65 3-82 (104)
137 PF06874 FBPase_2: Firmicute f 87.6 0.3 6.5E-06 43.0 1.5 49 18-67 171-224 (640)
138 PF09423 PhoD: PhoD-like phosp 86.0 1.2 2.6E-05 38.1 4.3 39 2-43 106-144 (453)
139 KOG2476 Uncharacterized conser 85.0 1.8 3.9E-05 36.9 4.7 62 2-65 6-76 (528)
140 KOG1625 DNA polymerase alpha-p 82.3 35 0.00075 30.1 12.2 44 108-157 535-578 (600)
141 PRK02228 V-type ATP synthase s 81.7 2.5 5.5E-05 28.3 3.7 61 2-62 1-79 (100)
142 KOG0377 Protein serine/threoni 81.0 0.57 1.2E-05 39.6 0.4 58 4-67 167-237 (631)
143 COG0639 ApaH Diadenosine tetra 75.7 3 6.6E-05 28.7 2.8 76 82-159 45-124 (155)
144 PRK01045 ispH 4-hydroxy-3-meth 75.4 22 0.00047 28.9 7.8 82 32-125 30-130 (298)
145 PRK03957 V-type ATP synthase s 71.7 4.8 0.0001 26.9 2.8 63 2-65 1-77 (100)
146 COG0761 lytB 4-Hydroxy-3-methy 71.2 26 0.00057 28.2 7.2 111 1-124 1-130 (294)
147 PRK12360 4-hydroxy-3-methylbut 70.3 31 0.00068 27.7 7.6 84 32-125 31-133 (281)
148 COG3855 Fbp Uncharacterized pr 63.9 3.6 7.9E-05 35.2 1.2 48 19-67 178-230 (648)
149 PRK01189 V-type ATP synthase s 63.0 10 0.00022 25.7 3.0 65 1-65 1-85 (104)
150 cd01141 TroA_d Periplasmic bin 59.1 20 0.00044 26.2 4.4 34 29-62 67-100 (186)
151 cd01149 HutB Hemin binding pro 58.4 22 0.00047 27.1 4.6 33 29-61 56-88 (235)
152 COG0716 FldA Flavodoxins [Ener 57.8 46 0.00099 23.7 6.0 33 1-34 1-33 (151)
153 PRK13371 4-hydroxy-3-methylbut 53.9 90 0.002 26.4 7.7 84 33-124 69-173 (387)
154 COG0561 Cof Predicted hydrolas 52.4 54 0.0012 25.4 6.1 53 1-55 1-59 (264)
155 PRK11070 ssDNA exonuclease Rec 51.1 65 0.0014 28.8 6.8 103 32-139 69-181 (575)
156 PLN02821 1-hydroxy-2-methyl-2- 49.9 1.2E+02 0.0027 26.2 8.0 85 33-123 137-240 (460)
157 PRK00087 4-hydroxy-3-methylbut 49.9 91 0.002 28.2 7.7 82 32-125 30-130 (647)
158 COG2247 LytB Putative cell wal 49.1 57 0.0012 26.8 5.6 80 29-114 73-160 (337)
159 COG2248 Predicted hydrolase (m 48.8 26 0.00056 27.9 3.5 36 2-42 177-212 (304)
160 PRK13600 putative ribosomal pr 48.7 68 0.0015 20.7 5.0 39 22-61 20-62 (84)
161 PF13258 DUF4049: Domain of un 47.5 30 0.00066 27.1 3.7 16 53-68 126-141 (318)
162 cd01425 RPS2 Ribosomal protein 46.3 48 0.001 24.9 4.7 30 29-58 125-154 (193)
163 COG1609 PurR Transcriptional r 46.3 1.2E+02 0.0026 24.8 7.4 69 21-90 104-185 (333)
164 PF02350 Epimerase_2: UDP-N-ac 45.3 17 0.00037 30.0 2.3 43 21-63 57-100 (346)
165 cd06295 PBP1_CelR Ligand bindi 45.2 54 0.0012 25.2 5.0 40 22-61 55-94 (275)
166 cd02067 B12-binding B12 bindin 44.6 69 0.0015 21.5 5.0 45 22-66 18-62 (119)
167 COG0052 RpsB Ribosomal protein 43.8 58 0.0013 25.7 4.8 36 31-66 156-192 (252)
168 TIGR01768 GGGP-family geranylg 43.5 69 0.0015 24.8 5.2 42 27-68 23-69 (223)
169 PF10957 DUF2758: Protein of u 43.2 26 0.00057 21.1 2.3 25 1-29 1-25 (60)
170 COG2923 DsrF Uncharacterized p 42.8 32 0.00069 23.8 2.9 39 1-40 1-42 (118)
171 TIGR01012 Sa_S2_E_A ribosomal 41.4 54 0.0012 24.9 4.2 38 30-67 107-158 (196)
172 TIGR03568 NeuC_NnaA UDP-N-acet 40.8 48 0.001 27.5 4.3 44 21-64 83-128 (365)
173 PF00072 Response_reg: Respons 40.6 82 0.0018 20.2 4.8 41 25-65 37-82 (112)
174 PF13727 CoA_binding_3: CoA-bi 40.5 26 0.00056 25.0 2.4 41 21-61 131-175 (175)
175 TIGR01769 GGGP geranylgeranylg 40.3 92 0.002 23.8 5.4 42 27-68 20-67 (205)
176 COG3540 PhoD Phosphodiesterase 38.5 18 0.00039 31.3 1.4 25 97-121 393-419 (522)
177 PRK04169 geranylgeranylglycery 37.9 1E+02 0.0022 24.1 5.4 42 27-68 28-74 (232)
178 COG0434 SgcQ Predicted TIM-bar 37.5 1.8E+02 0.004 23.0 6.6 60 3-62 145-213 (263)
179 PLN00416 carbonate dehydratase 36.9 89 0.0019 24.8 5.0 73 48-122 72-153 (258)
180 PRK04020 rps2P 30S ribosomal p 36.9 72 0.0016 24.4 4.3 27 31-57 114-140 (204)
181 PF03808 Glyco_tran_WecB: Glyc 36.8 28 0.0006 25.6 2.1 71 45-116 39-109 (172)
182 cd07389 MPP_PhoD Bacillus subt 36.4 56 0.0012 24.7 3.8 16 28-43 26-41 (228)
183 PRK14093 UDP-N-acetylmuramoyla 33.3 26 0.00056 30.2 1.6 57 4-62 339-408 (479)
184 PRK03379 vitamin B12-transport 33.1 85 0.0018 24.5 4.4 33 29-61 70-102 (260)
185 PLN02154 carbonic anhydrase 33.0 1.3E+02 0.0027 24.4 5.3 67 54-122 105-179 (290)
186 TIGR03659 IsdE heme ABC transp 32.9 87 0.0019 24.8 4.5 32 29-61 89-120 (289)
187 PF03437 BtpA: BtpA family; I 32.8 2.3E+02 0.0049 22.5 6.7 59 4-62 141-208 (254)
188 cd01143 YvrC Periplasmic bindi 32.4 88 0.0019 22.7 4.2 33 29-62 58-90 (195)
189 PRK09982 universal stress prot 32.1 48 0.001 23.1 2.6 22 97-119 92-113 (142)
190 PRK12311 rpsB 30S ribosomal pr 32.0 93 0.002 25.6 4.5 38 30-67 151-202 (326)
191 COG2201 CheB Chemotaxis respon 31.8 1.3E+02 0.0028 25.1 5.3 12 1-12 1-12 (350)
192 TIGR00236 wecB UDP-N-acetylglu 31.6 92 0.002 25.4 4.6 41 21-61 76-117 (365)
193 COG0381 WecB UDP-N-acetylgluco 31.5 91 0.002 26.3 4.4 23 21-43 82-104 (383)
194 COG0378 HypB Ni2+-binding GTPa 31.4 92 0.002 23.7 4.0 42 18-60 28-70 (202)
195 cd03786 GT1_UDP-GlcNAc_2-Epime 31.0 1E+02 0.0022 24.8 4.7 42 22-63 79-121 (363)
196 PF06925 MGDG_synth: Monogalac 30.5 47 0.001 24.1 2.4 32 21-52 79-110 (169)
197 TIGR01011 rpsB_bact ribosomal 30.1 1.2E+02 0.0026 23.5 4.6 29 30-58 154-182 (225)
198 PF02421 FeoB_N: Ferrous iron 30.0 62 0.0013 23.5 2.9 43 24-66 71-117 (156)
199 CHL00067 rps2 ribosomal protei 29.6 1.1E+02 0.0023 23.8 4.3 29 30-58 160-188 (230)
200 PRK06932 glycerate dehydrogena 29.6 1.6E+02 0.0035 23.9 5.6 23 30-52 43-65 (314)
201 COG1436 NtpG Archaeal/vacuolar 29.5 1.7E+02 0.0037 19.7 4.8 62 1-62 2-81 (104)
202 cd02812 PcrB_like PcrB_like pr 29.3 1.2E+02 0.0026 23.4 4.5 47 21-67 15-67 (219)
203 PF04900 Fcf1: Fcf1; InterPro 29.3 1.7E+02 0.0037 19.2 5.0 41 20-64 54-95 (101)
204 cd00883 beta_CA_cladeA Carboni 29.2 1.8E+02 0.0039 21.6 5.4 76 45-122 14-94 (182)
205 cd05312 NAD_bind_1_malic_enz N 29.2 1.4E+02 0.0029 24.1 4.9 68 23-91 97-169 (279)
206 PTZ00254 40S ribosomal protein 29.1 1.2E+02 0.0025 24.0 4.4 38 30-67 117-168 (249)
207 PRK10773 murF UDP-N-acetylmura 28.7 33 0.00072 29.3 1.5 57 4-62 327-392 (453)
208 CHL00073 chlN photochlorophyll 28.6 1.2E+02 0.0027 26.2 4.9 48 17-64 83-138 (457)
209 COG2875 CobM Precorrin-4 methy 28.5 94 0.002 24.4 3.7 90 28-118 73-169 (254)
210 TIGR03025 EPS_sugtrans exopoly 28.4 3.6E+02 0.0078 22.9 7.8 69 21-91 178-250 (445)
211 TIGR00215 lpxB lipid-A-disacch 28.4 1.4E+02 0.003 24.9 5.1 38 22-60 80-119 (385)
212 PTZ00235 DNA polymerase epsilo 27.9 1.7E+02 0.0038 23.7 5.3 50 109-167 235-290 (291)
213 cd01139 TroA_f Periplasmic bin 27.6 1E+02 0.0022 25.0 4.1 34 29-62 89-126 (342)
214 PRK05647 purN phosphoribosylgl 27.3 2.7E+02 0.0059 21.0 6.4 55 1-60 1-57 (200)
215 cd00884 beta_CA_cladeB Carboni 27.3 1.8E+02 0.004 21.8 5.1 73 48-122 18-100 (190)
216 cd06297 PBP1_LacI_like_12 Liga 27.2 1.4E+02 0.0031 22.9 4.8 40 21-60 45-84 (269)
217 COG4822 CbiK Cobalamin biosynt 27.1 94 0.002 24.2 3.5 46 21-66 156-210 (265)
218 PRK05299 rpsB 30S ribosomal pr 27.0 1.4E+02 0.0031 23.6 4.6 29 30-58 156-184 (258)
219 PF14360 PAP2_C: PAP2 superfam 26.9 26 0.00056 22.0 0.4 9 110-118 4-12 (74)
220 COG3426 Butyrate kinase [Energ 26.8 85 0.0018 25.5 3.3 39 29-67 294-336 (358)
221 cd00762 NAD_bind_malic_enz NAD 26.6 1.7E+02 0.0036 23.3 4.9 69 24-92 99-171 (254)
222 TIGR03023 WcaJ_sugtrans Undeca 26.5 4E+02 0.0087 22.7 7.7 71 20-92 180-254 (451)
223 PF01884 PcrB: PcrB family; I 26.5 1.9E+02 0.0041 22.6 5.1 49 20-68 21-73 (230)
224 COG1412 Uncharacterized protei 26.4 1.6E+02 0.0036 20.9 4.4 41 20-64 87-127 (136)
225 TIGR01481 ccpA catabolite cont 26.0 2.2E+02 0.0047 22.6 5.8 34 28-61 112-145 (329)
226 cd02071 MM_CoA_mut_B12_BD meth 25.8 1.8E+02 0.0039 19.8 4.6 39 26-64 22-60 (122)
227 cd01144 BtuF Cobalamin binding 25.6 1.5E+02 0.0032 22.5 4.6 34 29-62 55-88 (245)
228 TIGR02707 butyr_kinase butyrat 25.5 1.2E+02 0.0025 25.2 4.1 34 31-65 293-331 (351)
229 COG2382 Fes Enterochelin ester 25.5 1E+02 0.0022 25.1 3.6 35 33-67 240-282 (299)
230 cd06273 PBP1_GntR_like_1 This 25.5 1.7E+02 0.0038 22.1 5.0 38 22-60 47-84 (268)
231 COG1433 Uncharacterized conser 25.4 1.5E+02 0.0033 20.6 4.0 38 23-62 57-94 (121)
232 cd06533 Glyco_transf_WecG_TagA 24.8 46 0.00099 24.4 1.5 15 101-115 92-106 (171)
233 PLN03014 carbonic anhydrase 24.4 1.9E+02 0.0041 24.1 5.0 66 54-121 158-232 (347)
234 PRK12595 bifunctional 3-deoxy- 24.3 2.1E+02 0.0045 23.9 5.4 86 32-117 202-297 (360)
235 PRK01018 50S ribosomal protein 24.0 2.2E+02 0.0048 18.8 5.1 43 23-66 24-70 (99)
236 cd06271 PBP1_AglR_RafR_like Li 24.0 1.7E+02 0.0038 22.0 4.7 40 21-60 49-88 (268)
237 PF03102 NeuB: NeuB family; I 24.0 28 0.00061 27.3 0.2 83 36-119 95-183 (241)
238 cd03825 GT1_wcfI_like This fam 23.9 70 0.0015 25.4 2.5 11 2-12 1-11 (365)
239 KOG0081 GTPase Rab27, small G 23.9 2.3E+02 0.0049 21.1 4.8 10 56-65 125-134 (219)
240 COG0299 PurN Folate-dependent 23.8 57 0.0012 24.8 1.8 33 19-51 67-101 (200)
241 cd01542 PBP1_TreR_like Ligand- 23.8 1.9E+02 0.0042 21.7 4.9 39 21-60 46-84 (259)
242 PF06874 FBPase_2: Firmicute f 23.7 2E+02 0.0043 26.0 5.3 58 100-159 511-577 (640)
243 COG0788 PurU Formyltetrahydrof 23.5 50 0.0011 26.4 1.5 60 52-116 115-174 (287)
244 PF00318 Ribosomal_S2: Ribosom 23.5 2E+02 0.0043 21.9 4.8 31 30-60 142-172 (211)
245 cd06298 PBP1_CcpA_like Ligand- 23.5 1.7E+02 0.0038 22.1 4.6 39 21-60 46-84 (268)
246 TIGR00640 acid_CoA_mut_C methy 23.2 2.1E+02 0.0046 20.0 4.5 34 29-62 28-61 (132)
247 COG1358 RPL8A Ribosomal protei 23.2 2.3E+02 0.0051 19.5 4.6 44 22-65 34-81 (116)
248 cd06299 PBP1_LacI_like_13 Liga 22.9 2E+02 0.0044 21.7 4.9 34 28-61 52-85 (265)
249 TIGR03677 rpl7ae 50S ribosomal 22.8 1.7E+02 0.0037 20.0 3.9 44 22-65 33-80 (117)
250 PRK06756 flavodoxin; Provision 22.7 92 0.002 21.9 2.7 33 1-34 1-33 (148)
251 cd06294 PBP1_ycjW_transcriptio 22.4 1.8E+02 0.0038 22.1 4.5 42 20-61 49-90 (270)
252 cd01984 AANH_like Adenine nucl 21.6 1E+02 0.0022 19.1 2.5 23 98-120 38-60 (86)
253 cd01575 PBP1_GntR Ligand-bindi 21.3 2.4E+02 0.0051 21.3 5.0 42 21-64 46-87 (268)
254 PRK13602 putative ribosomal pr 21.0 2.4E+02 0.0051 17.9 4.9 43 22-65 18-64 (82)
255 PRK00025 lpxB lipid-A-disaccha 20.8 2.4E+02 0.0052 23.0 5.1 43 22-65 76-120 (380)
256 PRK13195 pyrrolidone-carboxyla 20.7 65 0.0014 25.0 1.6 19 21-39 51-69 (222)
257 PRK09534 btuF corrinoid ABC tr 20.6 1.9E+02 0.004 24.0 4.4 32 29-61 117-148 (359)
258 PTZ00215 ribose 5-phosphate is 20.6 88 0.0019 22.7 2.2 33 2-39 3-37 (151)
259 PLN03064 alpha,alpha-trehalose 20.6 1.3E+02 0.0028 28.7 3.8 23 31-53 789-813 (934)
260 TIGR00644 recJ single-stranded 20.6 5.5E+02 0.012 22.7 7.5 101 31-138 53-164 (539)
261 cd06293 PBP1_LacI_like_11 Liga 20.4 2.5E+02 0.0055 21.3 5.0 34 27-60 51-84 (269)
262 PRK12480 D-lactate dehydrogena 20.4 2.7E+02 0.0058 22.8 5.2 22 30-51 44-66 (330)
263 TIGR03413 GSH_gloB hydroxyacyl 20.0 1.7E+02 0.0038 22.7 4.0 10 33-42 119-128 (248)
264 PRK05096 guanosine 5'-monophos 20.0 2.1E+02 0.0045 23.8 4.4 46 20-67 110-162 (346)
No 1
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=100.00 E-value=1.4e-38 Score=237.54 Aligned_cols=178 Identities=70% Similarity=1.215 Sum_probs=155.4
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEE
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFK 82 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~ 82 (190)
+|+++||||++.+...+.+.+.+++++.++|.|+|+||+++.++++.++++..|+++|+||||....+|....++++|.+
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~~~~~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~g~~ 80 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSKETYDYLKTIAPDVHIVRGDFDENLNYPETKVITVGQFK 80 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCCHHHHHHHHhhCCceEEEECCCCccccCCCcEEEEECCEE
Confidence 58999999976554456667888876678999999999999999999988766799999999987788999999999999
Q ss_pred EEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCCEEE
Q 029629 83 LGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVV 162 (190)
Q Consensus 83 i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~~~~ 162 (190)
++++||+...++...+.+...+++.++|+++|||||.+.....++++++||||++.++.++++.+.++|++++++++.+.
T Consensus 81 i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p~~~~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~ 160 (178)
T cd07394 81 IGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKFEAFEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVV 160 (178)
T ss_pred EEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcceEEEECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEE
Confidence 99999998776666677777777889999999999999999999999999999997765545556789999999999999
Q ss_pred EEEEEeeCCeEEEEEEEe
Q 029629 163 VYVYELIDGEVKVDKIDF 180 (190)
Q Consensus 163 ~~~~~l~~~~~~~~~~~~ 180 (190)
++++.+.++++++++++|
T Consensus 161 ~~~~~l~~~~~~~~~~~~ 178 (178)
T cd07394 161 TYVYQLIDGEVKVEKIEY 178 (178)
T ss_pred EEEEEEECCcEEEEEecC
Confidence 999999999999999875
No 2
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=100.00 E-value=4.5e-35 Score=215.84 Aligned_cols=165 Identities=32% Similarity=0.465 Sum_probs=142.9
Q ss_pred CeEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhh-hCCcEEEeccCCCCCC---CCCcceEE
Q 029629 1 MVLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKS-LCPDLHVTRGEYDEDS---RYPETKTL 76 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~-l~~~~~~v~GNHD~~~---~~p~~~~~ 76 (190)
||||+++||+|++.+ ......++....++|+|||+||+.....+..+.. +..++++|.||+|... .+|+...+
T Consensus 1 ~m~ilviSDtH~~~~---~~~~~~~~~~~~~~d~vih~GD~~~~~~~~~l~~~~~~~i~~V~GN~D~~~~~~~~p~~~~~ 77 (172)
T COG0622 1 MMKILVISDTHGPLR---AIEKALKIFNLEKVDAVIHAGDSTSPFTLDALEGGLAAKLIAVRGNCDGEVDQEELPEELVL 77 (172)
T ss_pred CcEEEEEeccCCChh---hhhHHHHHhhhcCCCEEEECCCcCCccchHHhhcccccceEEEEccCCCccccccCChhHeE
Confidence 899999999998643 1344455566789999999999999888888888 5778999999999986 79999999
Q ss_pred EeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEE
Q 029629 77 TIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDI 156 (190)
Q Consensus 77 ~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i 156 (190)
+++|.+|+++||+.+.+..+...+..+++..++|++++||||.|...+.+++.++||||++.|+ . ..+++|+++++
T Consensus 78 ~~~g~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~~~~~~~i~~vNPGS~s~pr---~-~~~~sy~il~~ 153 (172)
T COG0622 78 EVGGVKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVAEKVGGILLVNPGSVSGPR---G-GNPASYAILDV 153 (172)
T ss_pred EECCEEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCCcccEEEECCEEEEcCCCcCCCC---C-CCCcEEEEEEc
Confidence 9999999999999987777888899999999999999999999999999999999999999863 2 25669999999
Q ss_pred eCCEEEEEEEEeeCCe
Q 029629 157 DGLRVVVYVYELIDGE 172 (190)
Q Consensus 157 ~~~~~~~~~~~l~~~~ 172 (190)
++.++.+.+......+
T Consensus 154 ~~~~~~~~~~~~~~~~ 169 (172)
T COG0622 154 DNLEVEVLFLERDRAE 169 (172)
T ss_pred CCCEEEEEEeeccccc
Confidence 9998887777665433
No 3
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=100.00 E-value=1.3e-32 Score=201.94 Aligned_cols=155 Identities=31% Similarity=0.501 Sum_probs=128.6
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCC-CccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCCCCC-CCCCcceEEEeC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPG-KIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDED-SRYPETKTLTIG 79 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~-~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~-~~~p~~~~~~~~ 79 (190)
|||+++||+|++.. . .+.+.++++.. ++|.|+++||+++.++++.++++..|+++|+||||.. ..+|....++++
T Consensus 1 m~i~viSD~H~~~~--~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~l~~~~~~~~~V~GN~D~~~~~~~~~~~~~~~ 77 (158)
T TIGR00040 1 MKILVISDTHGPLR--A-TELPVELFNLESNVDLVIHAGDLTSPFVLKEFEDLAAKVIAVRGNNDGERDELPEEEIFEAE 77 (158)
T ss_pred CEEEEEecccCCcc--h-hHhHHHHHhhccCCCEEEEcCCCCCHHHHHHHHHhCCceEEEccCCCchhhhCCcceEEEEC
Confidence 89999999998642 2 34444555555 8999999999999889999998877899999999975 468888899999
Q ss_pred CEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCC
Q 029629 80 QFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGL 159 (190)
Q Consensus 80 ~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~ 159 (190)
+.+++++||++..+..+.+.+..+.+..+++++++||||.+.....+++.++||||++.++ . +..++|++++++++
T Consensus 78 g~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~~~~~~~~iNpGs~~~~~---~-~~~~~~~il~~~~~ 153 (158)
T TIGR00040 78 GIDFGLVHGDLVYPRGDLLVLEYLAKELGVDVLIFGHTHIPVAEELRGILLINPGSLTGPR---N-GNTPSYAILDVDKD 153 (158)
T ss_pred CEEEEEEeCcccccCCCHHHHHHHHhccCCCEEEECCCCCCccEEECCEEEEECCcccccc---C-CCCCeEEEEEecCC
Confidence 9999999999766655666666676677899999999999999889999999999999753 2 23689999999888
Q ss_pred EEEE
Q 029629 160 RVVV 163 (190)
Q Consensus 160 ~~~~ 163 (190)
.++.
T Consensus 154 ~~~~ 157 (158)
T TIGR00040 154 KVTA 157 (158)
T ss_pred eEEe
Confidence 7653
No 4
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=187.57 Aligned_cols=181 Identities=70% Similarity=1.209 Sum_probs=170.8
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCE
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQF 81 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~ 81 (190)
|-+++++|+|.+.+..++.+.|++++-..++..|+++|.++..+.+++|+.+...+..|+|.-|.....|+...+..+.+
T Consensus 1 mLvL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlcs~e~~dylk~l~~dvhiVrGeFD~~~~yP~~kvvtvGqf 80 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLCSKESYDYLKTLSSDVHIVRGEFDENLKYPENKVVTVGQF 80 (183)
T ss_pred CEEEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcchHHHHHHHHhhCCCcEEEecccCccccCCccceEEeccE
Confidence 56789999999999999999999988778899999999999999999999999899999999999999999999999999
Q ss_pred EEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCC-CCCeEEEEEEeCCE
Q 029629 82 KLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFD-VNPSFVLMDIDGLR 160 (190)
Q Consensus 82 ~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~-~~~~~~ll~i~~~~ 160 (190)
+|.++||+...||++++.+..++++.++|+.+.||||....+..+|..++||||..+++.....+ ..++|+++++.+..
T Consensus 81 kIG~chGhqViP~gd~~sL~~LaRqldvDILl~G~Th~f~Aye~eg~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~ 160 (183)
T KOG3325|consen 81 KIGLCHGHQVIPWGDPESLALLARQLDVDILLTGHTHKFEAYEHEGKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGST 160 (183)
T ss_pred EEEeecCcEeecCCCHHHHHHHHHhcCCcEEEeCCceeEEEEEeCCcEEeCCCcccCCCcccccCCCCCceEEEEecCCE
Confidence 99999999999999999999999999999999999999999999999999999999887554444 78999999999999
Q ss_pred EEEEEEEeeCCeEEEEEEEeec
Q 029629 161 VVVYVYELIDGEVKVDKIDFKK 182 (190)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~ 182 (190)
+.+++|++-+++++++++.|+|
T Consensus 161 ~v~YvY~lidgeVkVdki~ykK 182 (183)
T KOG3325|consen 161 VVTYVYRLIDGEVKVDKIEYKK 182 (183)
T ss_pred EEEEEeeeeCCcEEEEEEEecC
Confidence 9999999999999999999987
No 5
>PRK09453 phosphodiesterase; Provisional
Probab=99.97 E-value=7.2e-30 Score=191.48 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=118.7
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-------------HHHHHHHhhhCCcEEEeccCCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-------------KEVHDYLKSLCPDLHVTRGEYDEDS 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-------------~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
|||+++||+|++. .. .+++.+.+++.++|.|+++||+++ .++++.|++++.++++|+||||...
T Consensus 1 mri~viSD~Hg~~--~~-~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~~~ 77 (182)
T PRK09453 1 MKLMFASDTHGSL--PA-TEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSEV 77 (182)
T ss_pred CeEEEEEeccCCH--HH-HHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcchh
Confidence 8999999999753 22 355556566688999999999985 3567778887678999999999753
Q ss_pred -----CCCc---ceEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCC
Q 029629 69 -----RYPE---TKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAY 140 (190)
Q Consensus 69 -----~~p~---~~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~ 140 (190)
.+|. ...+++++.+++++||++..+ + .+.+..++|++++||+|.|.....+++.++||||++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~g~~i~l~HG~~~~~----~---~~~~~~~~d~vi~GHtH~p~~~~~~~~~~iNpGs~~~p~ 150 (182)
T PRK09453 78 DQMLLHFPIMAPYQQVLLEGKRLFLTHGHLYGP----E---NLPALHDGDVLVYGHTHIPVAEKQGGIILFNPGSVSLPK 150 (182)
T ss_pred hhhccCCcccCceEEEEECCeEEEEECCCCCCh----h---hcccccCCCEEEECCCCCCcceEECCEEEEECCCccccC
Confidence 2332 355788999999999987532 1 123456789999999999999999999999999999763
Q ss_pred CCCCCCCCCeEEEEEEeCCEEEEEEEEeeCCe
Q 029629 141 SSFTFDVNPSFVLMDIDGLRVVVYVYELIDGE 172 (190)
Q Consensus 141 ~~~~~~~~~~~~ll~i~~~~~~~~~~~l~~~~ 172 (190)
+...++|++++++ .++++.+.+++
T Consensus 151 ----~~~~~s~~il~~~----~~~~~~~~~~~ 174 (182)
T PRK09453 151 ----GGYPASYGILDDN----VLSVIDLEGGE 174 (182)
T ss_pred ----CCCCCeEEEEECC----cEEEEECCCCe
Confidence 3457899999973 45777777766
No 6
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.97 E-value=2.3e-29 Score=183.94 Aligned_cols=151 Identities=26% Similarity=0.345 Sum_probs=116.0
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCCCCCC---CCCcceEEEeC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDS---RYPETKTLTIG 79 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~---~~p~~~~~~~~ 79 (190)
||+++||+|++. ...+++.+.++ ++|.|+++||+++......+ ....|+++|+||||... .+|....++++
T Consensus 1 ~i~~isD~H~~~---~~~~~~~~~~~--~~d~ii~~GD~~~~~~~~~~-~~~~~~~~V~GNhD~~~~~~~~p~~~~~~~~ 74 (155)
T cd00841 1 KIGVISDTHGSL---ELLEKALELFG--DVDLIIHAGDVLYPGPLNEL-ELKAPVIAVRGNCDGEVDFPILPEEAVLEIG 74 (155)
T ss_pred CEEEEecCCCCH---HHHHHHHHHhc--CCCEEEECCccccccccchh-hcCCcEEEEeCCCCCcCCcccCCceEEEEEC
Confidence 689999999853 22344444443 29999999999985333333 23358999999999876 67888889999
Q ss_pred CEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCC
Q 029629 80 QFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGL 159 (190)
Q Consensus 80 ~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~ 159 (190)
+.+++++||+.......... ...++..+++++++||||.+.....+++.++||||++.++ . .++++|+++++++
T Consensus 75 g~~i~v~Hg~~~~~~~~~~~-~~~~~~~~~d~vi~GHtH~~~~~~~~~~~~inpGs~~~~~---~-~~~~~~~i~~~~~- 148 (155)
T cd00841 75 GKRIFLTHGHLYGVKNGLDR-LYLAKEGGADVVLYGHTHIPVIEKIGGVLLLNPGSLSLPR---G-GGPPTYAILEIDD- 148 (155)
T ss_pred CEEEEEECCcccccccchhh-hhhhhhcCCCEEEECcccCCccEEECCEEEEeCCCccCcC---C-CCCCeEEEEEecC-
Confidence 99999999998655433333 4445567899999999999999888999999999999762 2 4678999999987
Q ss_pred EEEEEE
Q 029629 160 RVVVYV 165 (190)
Q Consensus 160 ~~~~~~ 165 (190)
++++++
T Consensus 149 ~~~~~~ 154 (155)
T cd00841 149 KGEVEI 154 (155)
T ss_pred CCcEEE
Confidence 555554
No 7
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.96 E-value=1.4e-27 Score=174.00 Aligned_cols=147 Identities=28% Similarity=0.408 Sum_probs=112.7
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-HHHHHHHhhhCCcEEEeccCCCCCC--------CCCc
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-KEVHDYLKSLCPDLHVTRGEYDEDS--------RYPE 72 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~--------~~p~ 72 (190)
|||+++||+|++.. .+ +++.+.+ .++|.|+++||+++ .++++.++++ |+++|+||||... .++.
T Consensus 1 Mki~~~sD~H~~~~--~~-~~~~~~~--~~~d~vi~~GDi~~~~~~~~~~~~~--~~~~v~GNHD~~~~~~~~~~~~~~~ 73 (156)
T PF12850_consen 1 MKIAVISDLHGNLD--AL-EAVLEYI--NEPDFVIILGDIFDPEEVLELLRDI--PVYVVRGNHDNWAFPNENDEEYLLD 73 (156)
T ss_dssp EEEEEEE--TTTHH--HH-HHHHHHH--TTESEEEEES-SCSHHHHHHHHHHH--EEEEE--CCHSTHHHSEECTCSSHS
T ss_pred CEEEEEeCCCCChh--HH-HHHHHHh--cCCCEEEECCCchhHHHHHHHHhcC--CEEEEeCCcccccchhhhhcccccc
Confidence 99999999998532 23 3333434 46999999999999 4677888887 8999999999753 1445
Q ss_pred ceEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEE
Q 029629 73 TKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFV 152 (190)
Q Consensus 73 ~~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ 152 (190)
....+.++.+++++||++..+....+.+...+...+++++++||+|.+.....+++.++||||++.+. .+.+++|+
T Consensus 74 ~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~~~~~~~~~Gs~~~~~----~~~~~~~~ 149 (156)
T PF12850_consen 74 ALRLTIDGFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTHRPQVFKIGGIHVINPGSIGGPR----HGDQSGYA 149 (156)
T ss_dssp EEEEEETTEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSSSEEEEEETTEEEEEE-GSSS-S----SSSSEEEE
T ss_pred ceeeeecCCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcccceEEEECCEEEEECCcCCCCC----CCCCCEEE
Confidence 56778899999999999987766666677777789999999999999999999999999999999763 22389999
Q ss_pred EEEEeCC
Q 029629 153 LMDIDGL 159 (190)
Q Consensus 153 ll~i~~~ 159 (190)
+++++++
T Consensus 150 i~~~~~~ 156 (156)
T PF12850_consen 150 ILDIEDK 156 (156)
T ss_dssp EEEETTT
T ss_pred EEEEecC
Confidence 9999764
No 8
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.89 E-value=8.8e-22 Score=151.32 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=106.0
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH--------HHHHHHhhhCCcEEEeccCCCCCC-----
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK--------EVHDYLKSLCPDLHVTRGEYDEDS----- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~--------~~~~~l~~l~~~~~~v~GNHD~~~----- 68 (190)
|||+++||+|.+. ..++++.+.+++.++|.|+++||+++. ++++.++++..|+++|+||||...
T Consensus 5 ~kIl~iSDiHgn~---~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~~v~~~l~ 81 (224)
T cd07388 5 RYVLATSNPKGDL---EALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDAPLWEYLR 81 (224)
T ss_pred eEEEEEEecCCCH---HHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCChHHHHHHH
Confidence 7999999999752 234555555556789999999999882 234555566679999999999630
Q ss_pred -CC------Cc-----ceEEE-------------------------------------------eCCEEEEEeeCCccCC
Q 029629 69 -RY------PE-----TKTLT-------------------------------------------IGQFKLGICHGHQVIP 93 (190)
Q Consensus 69 -~~------p~-----~~~~~-------------------------------------------~~~~~i~~~Hg~~~~~ 93 (190)
.+ |. ..... .....++++|.+|+..
T Consensus 82 ~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~ 161 (224)
T cd07388 82 EAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHK 161 (224)
T ss_pred HHhcccccCccceecCCCeEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCC
Confidence 00 10 00000 1235688999877654
Q ss_pred ---CCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCCEEE
Q 029629 94 ---WGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVV 162 (190)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~~~~ 162 (190)
..++..+.+++++.++.+++|||.| ....+.+++.++|||+.. .+.||++++++.+++
T Consensus 162 g~~h~GS~alr~~I~~~~P~l~i~GHih-~~~~~~g~t~vvNpg~~~----------~g~~a~i~~~~~~v~ 222 (224)
T cd07388 162 GLNEQGSHEVAHLIKTHNPLVVLVGGKG-QKHELLGASWVVVPGDLS----------EGRYALLDLRARKLE 222 (224)
T ss_pred CCCccCHHHHHHHHHHhCCCEEEEcCCc-eeEEEeCCEEEECCCccc----------CCcEEEEEecCccee
Confidence 3466778888989999999999999 455678999999999976 357999999865543
No 9
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.88 E-value=1.4e-21 Score=152.68 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=104.0
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhh--CCCCccEEEEcCCCCC------------HHHHHHHhhh---CCcEEEeccCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSML--VPGKIQHIICTGNLSI------------KEVHDYLKSL---CPDLHVTRGEY 64 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~--~~~~~D~vi~~GDl~~------------~~~~~~l~~l---~~~~~~v~GNH 64 (190)
||++++||+|++.......+.+.+.+ ...++|.|+++||+++ .++.+.|+++ +.|+++|+|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 79999999998654434444555544 2368999999999996 1334444443 36899999999
Q ss_pred CCCC-----------CCCcceEEEeCCEEEEEeeCCccCCC---------------------------------------
Q 029629 65 DEDS-----------RYPETKTLTIGQFKLGICHGHQVIPW--------------------------------------- 94 (190)
Q Consensus 65 D~~~-----------~~p~~~~~~~~~~~i~~~Hg~~~~~~--------------------------------------- 94 (190)
|... -+|+...++++|.+++++||+.....
T Consensus 81 D~~~~~~~~~~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~~p~~~~~~ia~~~~~~s 160 (241)
T PRK05340 81 DFLLGKRFAKAAGMTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRNPWLQWLFLALPLSIRLRIAAKMRAKS 160 (241)
T ss_pred chhhhHHHHHhCCCEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9753 24566677889999999999874110
Q ss_pred -------------CCHHHHHHHhhccCccEEEeCCCCCcceEEEc-C---eEEEccCCccCCCCCCCCCCCCeEEEEEEe
Q 029629 95 -------------GDLDSLAMLQRQLDVDILVTGHTHQFKAYKHE-G---GVVINPGSATGAYSSFTFDVNPSFVLMDID 157 (190)
Q Consensus 95 -------------~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~-~---~~~inpGs~~~~~~~~~~~~~~~~~ll~i~ 157 (190)
...+.+.+.+++.+++++++||+|.+...... + ..++|.|++.. ..+| +.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~~lgdw~~---------~~~~--~~~~ 229 (241)
T PRK05340 161 KAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRIVLGDWHE---------QGSV--LKVD 229 (241)
T ss_pred HHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEEEeCCCCC---------CCeE--EEEE
Confidence 01122445556678999999999998765432 2 36899999852 2445 4556
Q ss_pred CCEEEEE
Q 029629 158 GLRVVVY 164 (190)
Q Consensus 158 ~~~~~~~ 164 (190)
++++++.
T Consensus 230 ~~~~~~~ 236 (241)
T PRK05340 230 ADGVELI 236 (241)
T ss_pred CCceEEE
Confidence 6665543
No 10
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.88 E-value=1.3e-21 Score=139.82 Aligned_cols=114 Identities=22% Similarity=0.219 Sum_probs=86.9
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH-------HHHHHHhhhCCc-EEEeccCCCCCCCCCcce
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK-------EVHDYLKSLCPD-LHVTRGEYDEDSRYPETK 74 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-------~~~~~l~~l~~~-~~~v~GNHD~~~~~p~~~ 74 (190)
||+++||+|+... .+...++|.++++||+++. ..+++++++..+ +++|+||||.+..
T Consensus 1 ~i~~isD~H~~~~----------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~~~~----- 65 (135)
T cd07379 1 RFVCISDTHSRHR----------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAGNHDLTLD----- 65 (135)
T ss_pred CEEEEeCCCCCCC----------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCCCCeEEEEECCCCCcCC-----
Confidence 6899999997531 1234679999999999972 356667766544 5789999998644
Q ss_pred EEEeCCEEEEEeeCCccCCC--------CCHHHHHHHhhccCccEEEeCCCCCcc-eE----EEcCeEEEccC
Q 029629 75 TLTIGQFKLGICHGHQVIPW--------GDLDSLAMLQRQLDVDILVTGHTHQFK-AY----KHEGGVVINPG 134 (190)
Q Consensus 75 ~~~~~~~~i~~~Hg~~~~~~--------~~~~~~~~~~~~~~~~~vi~GHtH~~~-~~----~~~~~~~inpG 134 (190)
.++.+++++||++..+. .+...+.+.+++.+++++++||+|.+. .. +.+++.++||+
T Consensus 66 ---~~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~t~~in~~ 135 (135)
T cd07379 66 ---PEDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAERVLDTDGETLFVNAS 135 (135)
T ss_pred ---CCCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcCceeEecccCCCEEEEeCC
Confidence 46889999999886432 223456777778889999999999996 44 56899999986
No 11
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=147.25 Aligned_cols=153 Identities=19% Similarity=0.262 Sum_probs=112.0
Q ss_pred CeEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCC--C---H----HH--HHHHhhhCCcEEEeccCCCCCC-
Q 029629 1 MVLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLS--I---K----EV--HDYLKSLCPDLHVTRGEYDEDS- 68 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~--~---~----~~--~~~l~~l~~~~~~v~GNHD~~~- 68 (190)
|||++.+||+|++. ...+++..+....++|+++++|||+ + . +. ++.+++...|+++|+||+|...
T Consensus 3 ~mkil~vtDlHg~~---~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD~~~v 79 (226)
T COG2129 3 KMKILAVTDLHGSE---DSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCDPPEV 79 (226)
T ss_pred cceEEEEeccccch---HHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCChHHH
Confidence 59999999999853 2345666666667899999999999 4 1 22 4566666789999999999873
Q ss_pred --------------------------------------CCCc--------ceEEEe-CCEEEEEeeCCccCC--------
Q 029629 69 --------------------------------------RYPE--------TKTLTI-GQFKLGICHGHQVIP-------- 93 (190)
Q Consensus 69 --------------------------------------~~p~--------~~~~~~-~~~~i~~~Hg~~~~~-------- 93 (190)
.+++ ...-+. +-.+|+++|.+|+..
T Consensus 80 ~~~l~~~~~~v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~HaPP~gt~~d~~~g~ 159 (226)
T COG2129 80 IDVLKNAGVNVHGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNPVNILLTHAPPYGTLLDTPSGY 159 (226)
T ss_pred HHHHHhcccccccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccCcceEEEecCCCCCccccCCCCc
Confidence 0011 011111 122399999877532
Q ss_pred -CCCHHHHHHHhhccCccEEEeCCCCC-cceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCCEEEEEEE
Q 029629 94 -WGDLDSLAMLQRQLDVDILVTGHTHQ-FKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVY 166 (190)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~vi~GHtH~-~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~~~~~~~~ 166 (190)
.-++..++++.++.++.+.+|||.|. +.....+++.++|||+++ .+.||++++++..++++..
T Consensus 160 ~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~TivVNPG~~~----------~g~yA~i~l~~~~Vk~~~~ 224 (226)
T COG2129 160 VHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGNTIVVNPGPLG----------EGRYALIELEKEVVKLEQF 224 (226)
T ss_pred cccchHHHHHHHHHhCCceEEEeeecccccccccCCeEEECCCCcc----------CceEEEEEecCcEEEEEEe
Confidence 12456788889999999999999998 455678899999999976 3689999999987766543
No 12
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.87 E-value=9.9e-21 Score=150.58 Aligned_cols=173 Identities=18% Similarity=0.262 Sum_probs=114.5
Q ss_pred eEEEEEeecCCCCCCC------C----hHHHHHhhhC-CCCccEEEEcCCCCCH-------HHHHHHhhhCCcEEEeccC
Q 029629 2 VLVLAIGDLHIPHRAS------D----LPQKFKSMLV-PGKIQHIICTGNLSIK-------EVHDYLKSLCPDLHVTRGE 63 (190)
Q Consensus 2 mri~~iSD~H~~~~~~------~----~~~~l~~~~~-~~~~D~vi~~GDl~~~-------~~~~~l~~l~~~~~~v~GN 63 (190)
|||+++||+|+..... + +.+.+.++.+ ..++|+|+++||+++. ...+.|+++..|+++++||
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~~v~GN 94 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCVWLPGN 94 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEEEeCCC
Confidence 8999999999732110 1 2223333322 2479999999999982 3445666777899999999
Q ss_pred CCCCC---------CCC-cc--------eEE---------------------------Ee-CCEEEEEeeCCccCC---C
Q 029629 64 YDEDS---------RYP-ET--------KTL---------------------------TI-GQFKLGICHGHQVIP---W 94 (190)
Q Consensus 64 HD~~~---------~~p-~~--------~~~---------------------------~~-~~~~i~~~Hg~~~~~---~ 94 (190)
||... .+. .. ..+ +. +...++++|.+|... +
T Consensus 95 HD~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~~~~vv~~hH~P~~~~~~~ 174 (275)
T PRK11148 95 HDFQPAMYSALQDAGISPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAPERHTLVLLHHHPLPAGCAW 174 (275)
T ss_pred CCChHHHHHHHhhcCCCccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCCCCCeEEEEcCCCCCCCcch
Confidence 99742 010 00 000 01 123467777666422 1
Q ss_pred ------CCHHHHHHHhhcc-CccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCC-----CCCCCeEEEEEEe-CCEE
Q 029629 95 ------GDLDSLAMLQRQL-DVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFT-----FDVNPSFVLMDID-GLRV 161 (190)
Q Consensus 95 ------~~~~~~~~~~~~~-~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~-----~~~~~~~~ll~i~-~~~~ 161 (190)
.+.+.+.++++++ +++++++||+|.......+|+.++..+|.+.++.+.. ....++|.++++. ++.+
T Consensus 175 ~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~~g~~ 254 (275)
T PRK11148 175 LDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHADGSL 254 (275)
T ss_pred hhccCCCCHHHHHHHHhcCCCceEEEecccChHHhceECCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcCCCcE
Confidence 2345677778775 8999999999998888889998877777775432221 2345799999996 5568
Q ss_pred EEEEEEeeCCeEE
Q 029629 162 VVYVYELIDGEVK 174 (190)
Q Consensus 162 ~~~~~~l~~~~~~ 174 (190)
..++.++...++.
T Consensus 255 ~~~~~~~~~~~~~ 267 (275)
T PRK11148 255 ETEVHRLADTEFL 267 (275)
T ss_pred EEEEEEcCCCCcC
Confidence 8999999876663
No 13
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.86 E-value=4.9e-21 Score=138.10 Aligned_cols=116 Identities=24% Similarity=0.333 Sum_probs=87.8
Q ss_pred EEEEeecCCCCCCCChHH-------HHHhhhCCCCccEEEEcCCCCCH-------HHHHHHhhhCC---cEEEeccCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQ-------KFKSMLVPGKIQHIICTGNLSIK-------EVHDYLKSLCP---DLHVTRGEYDE 66 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~-------~l~~~~~~~~~D~vi~~GDl~~~-------~~~~~l~~l~~---~~~~v~GNHD~ 66 (190)
|+++||+|+......... ++.+.+++.++|+|+++||+++. ...+.++++.. |+++|+||||.
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD~ 80 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHDV 80 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCeE
Confidence 689999999654322111 23344557889999999999982 33455666654 89999999997
Q ss_pred CCCCCcceEEEeCCEEEEEeeCCccCCCCC-------HHHHHHHhhccCccEEEeCCCCCcceEE----EcCeEEEccCC
Q 029629 67 DSRYPETKTLTIGQFKLGICHGHQVIPWGD-------LDSLAMLQRQLDVDILVTGHTHQFKAYK----HEGGVVINPGS 135 (190)
Q Consensus 67 ~~~~p~~~~~~~~~~~i~~~Hg~~~~~~~~-------~~~~~~~~~~~~~~~vi~GHtH~~~~~~----~~~~~~inpGs 135 (190)
++++|.++..+... .+.+.+++++.++++++|||+|.+.... .++..++|+||
T Consensus 81 ----------------iv~~Hhp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~~~~~~~~~~~~aGs 144 (144)
T cd07400 81 ----------------IVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVLHGHKHVPYVGNISNAGGGLVVIGAGT 144 (144)
T ss_pred ----------------EEEecCCCCCCCccccccCCCHHHHHHHHHHcCCCEEEECCCCCcCeeeccCCCCCEEEEecCC
Confidence 99999887654322 2357777888899999999999998877 67889999997
No 14
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.86 E-value=2.6e-20 Score=154.24 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=59.6
Q ss_pred ccCccEEEeCCCCCcceEE----EcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCCEEEEEEEEeeC-CeEEEEEEEe
Q 029629 106 QLDVDILVTGHTHQFKAYK----HEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELID-GEVKVDKIDF 180 (190)
Q Consensus 106 ~~~~~~vi~GHtH~~~~~~----~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~~~~~~~~~l~~-~~~~~~~~~~ 180 (190)
..++|+++.||.|.+.... .++..+++|||+..-.....+..+.+|.+++++++.++++.+++.+ .++.+.++.+
T Consensus 226 p~~fDYValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~l 305 (405)
T TIGR00583 226 PDFFDLVIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEILL 305 (405)
T ss_pred hccCcEEEecccccccccccccCCCCceEEECCCcccccccccccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEEh
Confidence 3579999999999976532 2356899999976421111234778999999998899999999984 7799999987
Q ss_pred ecc
Q 029629 181 KKT 183 (190)
Q Consensus 181 ~~~ 183 (190)
+..
T Consensus 306 ~~~ 308 (405)
T TIGR00583 306 DKV 308 (405)
T ss_pred hhc
Confidence 754
No 15
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.84 E-value=7.9e-20 Score=141.93 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=92.9
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCC--CCccEEEEcCCCCCH------------HHH---HHHhhhCCcEEEeccCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVP--GKIQHIICTGNLSIK------------EVH---DYLKSLCPDLHVTRGEYDE 66 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~--~~~D~vi~~GDl~~~------------~~~---~~l~~l~~~~~~v~GNHD~ 66 (190)
.+++||+|++.......+.+.+.+.+ .+||.|+++||+++. ++. +.|++.+.|+++|+||||.
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~ 80 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDF 80 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 37999999864333333444444422 379999999999971 223 3343334689999999997
Q ss_pred CCC-----------CCcceEEEeCCEEEEEeeCCccCCCC----------------------------------------
Q 029629 67 DSR-----------YPETKTLTIGQFKLGICHGHQVIPWG---------------------------------------- 95 (190)
Q Consensus 67 ~~~-----------~p~~~~~~~~~~~i~~~Hg~~~~~~~---------------------------------------- 95 (190)
... ++....++++|.+++++||+.+....
T Consensus 81 ~~~~~~~~~~gi~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~l~~~~r~~l~~~~~~~s~~ 160 (231)
T TIGR01854 81 LIGKRFAREAGMTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFLHLPLAVRVKLARKIRAESRA 160 (231)
T ss_pred hhhHHHHHHCCCEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 631 35566778899999999998742100
Q ss_pred ------------CHHHHHHHhhccCccEEEeCCCCCcceEEEc----CeEEEccCCcc
Q 029629 96 ------------DLDSLAMLQRQLDVDILVTGHTHQFKAYKHE----GGVVINPGSAT 137 (190)
Q Consensus 96 ------------~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~----~~~~inpGs~~ 137 (190)
.+..+.+.++..++++++|||||.+.....+ +..++|.|++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~ 218 (231)
T TIGR01854 161 DKQMKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWY 218 (231)
T ss_pred hcCCCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCc
Confidence 0112344455678999999999999887654 67899999986
No 16
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.83 E-value=3.3e-20 Score=144.45 Aligned_cols=155 Identities=16% Similarity=0.242 Sum_probs=102.4
Q ss_pred EEEEEeecCCCCCC------CChHHHHH---hhhCCC--CccEEEEcCCCCC-------HHHHHHHhhhCCcEEEeccCC
Q 029629 3 LVLAIGDLHIPHRA------SDLPQKFK---SMLVPG--KIQHIICTGNLSI-------KEVHDYLKSLCPDLHVTRGEY 64 (190)
Q Consensus 3 ri~~iSD~H~~~~~------~~~~~~l~---~~~~~~--~~D~vi~~GDl~~-------~~~~~~l~~l~~~~~~v~GNH 64 (190)
||+++||+|..... .+..+.+. +.+++. ++|+|+++||+++ ..+.+.++++..|+++|+|||
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNH 80 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNH 80 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 79999999986432 12223333 333344 8999999999998 234556667778999999999
Q ss_pred CCCCC----C--------CcceEEEeC------------------------------------CEEEEEeeCCccCCC--
Q 029629 65 DEDSR----Y--------PETKTLTIG------------------------------------QFKLGICHGHQVIPW-- 94 (190)
Q Consensus 65 D~~~~----~--------p~~~~~~~~------------------------------------~~~i~~~Hg~~~~~~-- 94 (190)
|.... + +....++.+ ...|+++|.++....
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~il~~H~pp~~~~~~ 160 (240)
T cd07402 81 DDRAAMRAVFPELPPAPGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAPDKPTLVFLHHPPFPVGIA 160 (240)
T ss_pred CCHHHHHHhhccccccccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCCCCCEEEEECCCCccCCch
Confidence 97420 0 111112222 345777776553221
Q ss_pred -------CCHHHHHHHhhcc-CccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCC-----CCCCCeEEEEEEe
Q 029629 95 -------GDLDSLAMLQRQL-DVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFT-----FDVNPSFVLMDID 157 (190)
Q Consensus 95 -------~~~~~~~~~~~~~-~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~-----~~~~~~~~ll~i~ 157 (190)
.+.+.+.++++++ +++++++||+|.......+|+.+++.||++.++.+.. ....++|+.+++-
T Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (240)
T cd07402 161 WMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLH 236 (240)
T ss_pred hhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEECCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEe
Confidence 1234566777777 8999999999999888899999999999998763321 1233466666663
No 17
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=6.6e-20 Score=139.36 Aligned_cols=147 Identities=20% Similarity=0.208 Sum_probs=108.4
Q ss_pred EEEeecCCCCCCCChHHHHHhhhCCCC--ccEEEEcCCCCC------------HHHHHHHh---hhCCcEEEeccCCCCC
Q 029629 5 LAIGDLHIPHRASDLPQKFKSMLVPGK--IQHIICTGNLSI------------KEVHDYLK---SLCPDLHVTRGEYDED 67 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~~~--~D~vi~~GDl~~------------~~~~~~l~---~l~~~~~~v~GNHD~~ 67 (190)
++|||+|++...+...+.+.+.++... .|.++++||+++ .++.+.|. +-+.++|+++||||..
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 479999997555566667777665444 499999999998 13444444 3457999999999975
Q ss_pred C------------CCCcceEEEeCCEEEEEeeCCccCCCC-------------------------------------C--
Q 029629 68 S------------RYPETKTLTIGQFKLGICHGHQVIPWG-------------------------------------D-- 96 (190)
Q Consensus 68 ~------------~~p~~~~~~~~~~~i~~~Hg~~~~~~~-------------------------------------~-- 96 (190)
. -+|....+...|.+++++||+.+.+.. +
T Consensus 81 l~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~~~~~lflnl~l~~R~ri~~k~r~~s~~ 160 (237)
T COG2908 81 LGKRFAQEAGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWAWLQLLFLNLPLRVRRRIAYKIRSLSSW 160 (237)
T ss_pred HHHHHHhhcCceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccHHHHHHHHHhHHHHHHHHHHHHHHhhHH
Confidence 3 257888899999999999998753210 0
Q ss_pred ---------------HHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCCEE
Q 029629 97 ---------------LDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV 161 (190)
Q Consensus 97 ---------------~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~~~ 161 (190)
++...+.++..+++.+||||||++.....++..++|.|++.. .=++++++++..
T Consensus 161 ~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi~lGdW~~-----------~~s~~~v~~~~~ 229 (237)
T COG2908 161 AKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINLGDWVS-----------EGSILEVDDGGL 229 (237)
T ss_pred hHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEEecCcchh-----------cceEEEEecCcE
Confidence 011223445679999999999999999999999999999972 226777777765
Q ss_pred E
Q 029629 162 V 162 (190)
Q Consensus 162 ~ 162 (190)
+
T Consensus 230 ~ 230 (237)
T COG2908 230 E 230 (237)
T ss_pred E
Confidence 4
No 18
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.82 E-value=1.2e-19 Score=139.26 Aligned_cols=132 Identities=23% Similarity=0.265 Sum_probs=92.2
Q ss_pred EEEeecCCCCCCCChHHHHHhhhCC---CCccEEEEcCCCCCH-------------HH-HHHHh--hhCCcEEEeccCCC
Q 029629 5 LAIGDLHIPHRASDLPQKFKSMLVP---GKIQHIICTGNLSIK-------------EV-HDYLK--SLCPDLHVTRGEYD 65 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~---~~~D~vi~~GDl~~~-------------~~-~~~l~--~l~~~~~~v~GNHD 65 (190)
+++||+|++.........+...... .++|.++++||+++. +. ...++ ....++++++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 4899999976554443333333322 589999999999971 11 12222 23468999999999
Q ss_pred CCCC-----------CCcce-EEEeCCEEEEEeeCCccCCCCC-------------------------------------
Q 029629 66 EDSR-----------YPETK-TLTIGQFKLGICHGHQVIPWGD------------------------------------- 96 (190)
Q Consensus 66 ~~~~-----------~p~~~-~~~~~~~~i~~~Hg~~~~~~~~------------------------------------- 96 (190)
.... ++... .++.++.+++++||+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~HG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (217)
T cd07398 81 FLLGDFFAEELGLILLPDPLVHLELDGKRILLEHGDQFDTDDRAYQLLRRLGRNPYDQLLFLNRPLNRRRGIAGGLRWSS 160 (217)
T ss_pred HHHHhHHHHHcCCEEeccceEEEeeCCeEEEEECCCcCchhHHHHHHHHHHhCcHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 8752 22334 6788999999999988532100
Q ss_pred -----------------HHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCc
Q 029629 97 -----------------LDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSA 136 (190)
Q Consensus 97 -----------------~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~ 136 (190)
+..+.+.++..+++++++||+|.+.....++..++|+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~n~G~W 217 (217)
T cd07398 161 RYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHELDGKLYINLGDW 217 (217)
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEEECCEEEEECCCC
Confidence 0012334456789999999999999988899999999985
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.81 E-value=3.1e-19 Score=133.70 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=88.5
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH------HHHHHHhhhCCcEEEeccCCCCCCCC-------
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK------EVHDYLKSLCPDLHVTRGEYDEDSRY------- 70 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~------~~~~~l~~l~~~~~~v~GNHD~~~~~------- 70 (190)
|+++||+|++.. .+ +. ..+++.++|+|+++||+++. ..++.++++..|+++|+||||.....
T Consensus 1 i~~~sD~H~~~~--~~-~~--~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~~~~~~~~~~~~ 75 (188)
T cd07392 1 ILAISDIHGDVE--KL-EA--IILKAEEADAVIVAGDITNFGGKEAAVEINLLLAIGVPVLAVPGNCDTPEILGLLTSAG 75 (188)
T ss_pred CEEEEecCCCHH--HH-HH--HHhhccCCCEEEECCCccCcCCHHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHhhhcCc
Confidence 689999998531 11 22 23456789999999999982 22356666777999999999975200
Q ss_pred ------------------------Cc--c-------------eEEEeCCEEEEEeeCCccCCC---------CCHHHHHH
Q 029629 71 ------------------------PE--T-------------KTLTIGQFKLGICHGHQVIPW---------GDLDSLAM 102 (190)
Q Consensus 71 ------------------------p~--~-------------~~~~~~~~~i~~~Hg~~~~~~---------~~~~~~~~ 102 (190)
|. . .....++..++++|.++..++ .+...+.+
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~ 155 (188)
T cd07392 76 LNLHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSDGRLNNLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRK 155 (188)
T ss_pred EecCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHhhhhhccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHH
Confidence 00 0 011123567899998875421 14466788
Q ss_pred HhhccCccEEEeCCCCCcc-eEEEcCeEEEccC
Q 029629 103 LQRQLDVDILVTGHTHQFK-AYKHEGGVVINPG 134 (190)
Q Consensus 103 ~~~~~~~~~vi~GHtH~~~-~~~~~~~~~inpG 134 (190)
++++.++++++|||+|.+. ..+.+++.++|||
T Consensus 156 li~~~~~~~~l~GH~H~~~~~~~~~~~~~~n~G 188 (188)
T cd07392 156 FIEERQPLLCICGHIHESRGVDKIGNTLVVNPG 188 (188)
T ss_pred HHHHhCCcEEEEeccccccceeeeCCeEEecCC
Confidence 8888899999999999987 4468899999998
No 20
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.80 E-value=6.1e-18 Score=133.58 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=107.7
Q ss_pred eEEEEEeecCCCCCCCC-------------hHHHHHhhhCCC--CccEEEEcCCCCCH------------HHHHHHhhh-
Q 029629 2 VLVLAIGDLHIPHRASD-------------LPQKFKSMLVPG--KIQHIICTGNLSIK------------EVHDYLKSL- 53 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~-------------~~~~l~~~~~~~--~~D~vi~~GDl~~~------------~~~~~l~~l- 53 (190)
.+++++||+|....... +++.+.+.+++. +||+|+++||+++. ...+.++++
T Consensus 5 ~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (262)
T cd07395 5 FYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLD 84 (262)
T ss_pred EEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhcc
Confidence 47999999999632111 123333334444 89999999999972 123344444
Q ss_pred -CCcEEEeccCCCCCCC------------C-CcceEEEeC----------------------------------------
Q 029629 54 -CPDLHVTRGEYDEDSR------------Y-PETKTLTIG---------------------------------------- 79 (190)
Q Consensus 54 -~~~~~~v~GNHD~~~~------------~-p~~~~~~~~---------------------------------------- 79 (190)
..|+++++||||.... + +....+..+
T Consensus 85 ~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~ 164 (262)
T cd07395 85 PDIPLVCVCGNHDVGNTPTEESIKDYRDVFGDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESD 164 (262)
T ss_pred CCCcEEEeCCCCCCCCCCChhHHHHHHHHhCCcceEEEECCEEEEEeccccccCccccccchHHHHHHHHHHHHHHHhcc
Confidence 3689999999997410 0 111111112
Q ss_pred -CEEEEEeeCCccCCC------------CCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCC
Q 029629 80 -QFKLGICHGHQVIPW------------GDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFD 146 (190)
Q Consensus 80 -~~~i~~~Hg~~~~~~------------~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~ 146 (190)
...|+++|-+++... .....+..+++++++++++|||+|.......+++.++.+++.+.++ ..
T Consensus 165 ~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~~~g~~~~~~~~~~~~~----~~ 240 (262)
T cd07395 165 CKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGRYGGLEMVVTSAIGAQL----GN 240 (262)
T ss_pred CCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceEECCEEEEEcCceeccc----CC
Confidence 244666664442110 0123466777788999999999999888888899888888888653 33
Q ss_pred CCCeEEEEEEeCCEEEEEEEEe
Q 029629 147 VNPSFVLMDIDGLRVVVYVYEL 168 (190)
Q Consensus 147 ~~~~~~ll~i~~~~~~~~~~~l 168 (190)
..++|.++++++++++.+++.+
T Consensus 241 ~~~g~~~~~v~~~~~~~~~~~~ 262 (262)
T cd07395 241 DKSGLRIVKVTEDKIVHEYYSL 262 (262)
T ss_pred CCCCcEEEEECCCceeeeeeeC
Confidence 5789999999988888888754
No 21
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.78 E-value=2.1e-18 Score=131.83 Aligned_cols=132 Identities=22% Similarity=0.212 Sum_probs=87.5
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhC-CCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEeccCCCCCC-------
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLV-PGKIQHIICTGNLSI-----KEVHDYLKSLCPDLHVTRGEYDEDS------- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~~------- 68 (190)
+||+++||+|++. ..+ +++.+.+. ..++|.++++||+++ .++++.+.+ .++++|+||||...
T Consensus 1 ~ri~~isDiHg~~--~~l-~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe~~~~~~~~~~ 75 (207)
T cd07424 1 GRDFVVGDIHGHY--SLL-QKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHEQMAIDALRAE 75 (207)
T ss_pred CCEEEEECCCCCH--HHH-HHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCChHHHHhHhhCC
Confidence 4899999999853 233 33333333 246899999999998 366777765 46899999999542
Q ss_pred --------------------------------CCCcceEEEeCCEEEEEeeCCccCCCC-C--------H----------
Q 029629 69 --------------------------------RYPETKTLTIGQFKLGICHGHQVIPWG-D--------L---------- 97 (190)
Q Consensus 69 --------------------------------~~p~~~~~~~~~~~i~~~Hg~~~~~~~-~--------~---------- 97 (190)
.+|....+..++.+++++||+...... . .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~~~~~~~~~~~~~~~w~~ 155 (207)
T cd07424 76 PLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDGVGAVTLRPEDIEELLWSR 155 (207)
T ss_pred CcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhhhhccccCcccceeeeecc
Confidence 122233344556789999986532110 0 0
Q ss_pred HHHHHH-h-hccCccEEEeCCCCCcceEEEcCeEEEccCCccC
Q 029629 98 DSLAML-Q-RQLDVDILVTGHTHQFKAYKHEGGVVINPGSATG 138 (190)
Q Consensus 98 ~~~~~~-~-~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~ 138 (190)
..+... . ...+.+++++||||.+.....++..+|||||++.
T Consensus 156 ~~~~~~~~~~~~~~~~iV~GHTh~~~~~~~~~~i~ID~Gsv~g 198 (207)
T cd07424 156 TRIQKAQTQPIKGVDAVVHGHTPVKRPLRLGNVLYIDTGAVFD 198 (207)
T ss_pred chhhhcCccccCCCCEEEECCCCCCcceEECCEEEEECCCCCC
Confidence 011110 1 1124589999999999998889999999999873
No 22
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.78 E-value=2.1e-18 Score=122.39 Aligned_cols=110 Identities=20% Similarity=0.282 Sum_probs=81.3
Q ss_pred EEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhh-CCcEEEeccCCCCCCCCCcceEEEeCCEEE
Q 029629 5 LAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSL-CPDLHVTRGEYDEDSRYPETKTLTIGQFKL 83 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l-~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i 83 (190)
+++||+|.. .+..+.+.. +..++|.++++||+.. +..+.+.++ ..|+++|+|||| .++
T Consensus 1 ~viSDtH~~---~~~~~~~~~--~~~~~d~ii~~GD~~~-~~~~~~~~~~~~~~~~V~GN~D---------------~~I 59 (129)
T cd07403 1 LVISDTESP---ALYSPEIKV--RLEGVDLILSAGDLPK-EYLEYLVTMLNVPVYYVHGNHD---------------VDI 59 (129)
T ss_pred CeeccccCc---cccchHHHh--hCCCCCEEEECCCCCh-HHHHHHHHHcCCCEEEEeCCCc---------------cCE
Confidence 589999953 223333332 2578999999999865 445666654 457999999999 679
Q ss_pred EEeeCCccCCC-------CCHHHHHHHhhccCccEEEeCCCCCcceEE-----EcCeEEEccCC
Q 029629 84 GICHGHQVIPW-------GDLDSLAMLQRQLDVDILVTGHTHQFKAYK-----HEGGVVINPGS 135 (190)
Q Consensus 84 ~~~Hg~~~~~~-------~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~-----~~~~~~inpGs 135 (190)
+++|+++..+. .+.+.+.+++++.+++++++||+|.+.... .+++.++|++-
T Consensus 60 lv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~~~~~~~~~t~~~n~~~ 123 (129)
T cd07403 60 LLTHAPPAGIGDGEDFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQLRIRRVGDTTVINAYG 123 (129)
T ss_pred EEECCCCCcCcCcccccccCHHHHHHHHHHHCCcEEEEcCcCCCcCccccccccCCEEEEeCCc
Confidence 99999875432 244566677777789999999999987755 78899998853
No 23
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.78 E-value=1.5e-18 Score=133.52 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=90.0
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhC-CCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEeccCCCCCC--------
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLV-PGKIQHIICTGNLSI-----KEVHDYLKSLCPDLHVTRGEYDEDS-------- 68 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~~-------- 68 (190)
|++++||+|++. ..+.+.+.+ +. ..+.|.++++||+++ .++++.+++ .++++|+||||...
T Consensus 16 ri~visDiHg~~--~~l~~~l~~-~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE~~~~~~~~~~~ 90 (218)
T PRK09968 16 HIWVVGDIHGEY--QLLQSRLHQ-LSFCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHEAMALDAFETGD 90 (218)
T ss_pred eEEEEEeccCCH--HHHHHHHHh-cCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchHHHHHHHHhcCC
Confidence 899999999863 233333333 33 457899999999999 467777765 35899999999621
Q ss_pred -------------------------------CCCcceEEEeCCEEEEEeeCCccCCC-C---C---------HHHHHHHh
Q 029629 69 -------------------------------RYPETKTLTIGQFKLGICHGHQVIPW-G---D---------LDSLAMLQ 104 (190)
Q Consensus 69 -------------------------------~~p~~~~~~~~~~~i~~~Hg~~~~~~-~---~---------~~~~~~~~ 104 (190)
++|....++.++.+++++|++..... . . .+.+....
T Consensus 91 ~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~~ 170 (218)
T PRK09968 91 GNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDEYDFGKEIAESELLWPVDRVQKSL 170 (218)
T ss_pred hhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCchhhhccccchhhceeCcHHHhhCc
Confidence 24444555667888999998742110 0 0 11121111
Q ss_pred h-----ccCccEEEeCCCCCcceEEEcCeEEEccCCcc
Q 029629 105 R-----QLDVDILVTGHTHQFKAYKHEGGVVINPGSAT 137 (190)
Q Consensus 105 ~-----~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~ 137 (190)
+ ..+.+++++||||.+.....++..+|||||+.
T Consensus 171 ~~~~~~~~~~~~vv~GHTh~~~~~~~~~~i~IDtGs~~ 208 (218)
T PRK09968 171 NGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPK 208 (218)
T ss_pred cccccccCCCCEEEECCCCcCcceeECCEEEEECCCCC
Confidence 1 23568999999999999888899999999965
No 24
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.77 E-value=1.7e-18 Score=133.12 Aligned_cols=136 Identities=19% Similarity=0.244 Sum_probs=89.9
Q ss_pred EEEEEeecCCCCCCCC------------hHHHHHhhhCCCCccEEEEcCCCCCH---------HHHHHHhhh---CCcEE
Q 029629 3 LVLAIGDLHIPHRASD------------LPQKFKSMLVPGKIQHIICTGNLSIK---------EVHDYLKSL---CPDLH 58 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~------------~~~~l~~~~~~~~~D~vi~~GDl~~~---------~~~~~l~~l---~~~~~ 58 (190)
||+++||+|+...... ..+++.+.+.+.++|+|+++||+++. .+.+.++++ ..|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 7999999998643221 12333344456789999999999982 345556666 56899
Q ss_pred EeccCCCCCCCCC-------------------c-c-----------------------------------eEEEeCCEEE
Q 029629 59 VTRGEYDEDSRYP-------------------E-T-----------------------------------KTLTIGQFKL 83 (190)
Q Consensus 59 ~v~GNHD~~~~~p-------------------~-~-----------------------------------~~~~~~~~~i 83 (190)
+++||||...... . . .....+..+|
T Consensus 81 ~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 160 (223)
T cd00840 81 IIAGNHDSPSRLGALSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRSRLRDLLADAELRPRPLDPDDFNI 160 (223)
T ss_pred EecCCCCCccccccccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHHHHHHHHHHHHHHhhccCCCCcEE
Confidence 9999999874110 0 0 0011134578
Q ss_pred EEeeCCccCCCCCH----HHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccC
Q 029629 84 GICHGHQVIPWGDL----DSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATG 138 (190)
Q Consensus 84 ~~~Hg~~~~~~~~~----~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~ 138 (190)
+++|+......... ......+...+++++++||+|.+......+..+++|||+..
T Consensus 161 l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~ypGS~~~ 219 (223)
T cd00840 161 LLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQIILGGGPPIVYPGSPEG 219 (223)
T ss_pred EEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCeeecCCCceEEeCCCccc
Confidence 88887653221110 11222334678999999999999887777899999999874
No 25
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.76 E-value=5.5e-17 Score=128.57 Aligned_cols=156 Identities=12% Similarity=0.068 Sum_probs=101.4
Q ss_pred eEEEEEeecCCCCCCC----------ChHHHHHhhhCCCCccEEEEcCCCCCH----------HHHHHHhhhCCcEEEec
Q 029629 2 VLVLAIGDLHIPHRAS----------DLPQKFKSMLVPGKIQHIICTGNLSIK----------EVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 2 mri~~iSD~H~~~~~~----------~~~~~l~~~~~~~~~D~vi~~GDl~~~----------~~~~~l~~l~~~~~~v~ 61 (190)
.||+++||+|...... ...+.+.+.+++.+||+|+++||+++. ++.+.++++..|+++++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~ 80 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL 80 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence 3899999999643210 111223333445679999999999972 23455666778999999
Q ss_pred cCCCCCCCC------------C-cceEEEeCCEE----------------------------------------------
Q 029629 62 GEYDEDSRY------------P-ETKTLTIGQFK---------------------------------------------- 82 (190)
Q Consensus 62 GNHD~~~~~------------p-~~~~~~~~~~~---------------------------------------------- 82 (190)
||||..... + ....+..++.+
T Consensus 81 GNHD~~~~~~~~~~~~~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 160 (267)
T cd07396 81 GNHDLYNPSREYLLLYTLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGI 160 (267)
T ss_pred CccccccccHhhhhcccccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcC
Confidence 999976310 0 11222233333
Q ss_pred ----------------------EEEeeCCccCCC-------CCHHHHHHHhhc-cCccEEEeCCCCCcceEEEcCeEEEc
Q 029629 83 ----------------------LGICHGHQVIPW-------GDLDSLAMLQRQ-LDVDILVTGHTHQFKAYKHEGGVVIN 132 (190)
Q Consensus 83 ----------------------i~~~Hg~~~~~~-------~~~~~~~~~~~~-~~~~~vi~GHtH~~~~~~~~~~~~in 132 (190)
++++|.++.... .+.+.+.+++++ .+++++++||+|.......+|+.++.
T Consensus 161 ~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~gi~~~~ 240 (267)
T cd07396 161 GEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTSPHGLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQRHGIHFLT 240 (267)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCCccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCccccCCeeEEE
Confidence 444443221110 122445566666 47899999999999888889999999
Q ss_pred cCCccCCCCCCCCCCCCeEEEEEEeCCEEE
Q 029629 133 PGSATGAYSSFTFDVNPSFVLMDIDGLRVV 162 (190)
Q Consensus 133 pGs~~~~~~~~~~~~~~~~~ll~i~~~~~~ 162 (190)
.||++.. ++..+.|+++++-++.+.
T Consensus 241 ~~a~~~~-----~~~~~~~~~~~~~~~~~~ 265 (267)
T cd07396 241 LEGMVET-----PPESNAFGVVIVYEDRLI 265 (267)
T ss_pred echhhcC-----CCCCCceEEEEEeCCcee
Confidence 9999864 456788999999777643
No 26
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.75 E-value=2.6e-17 Score=127.92 Aligned_cols=137 Identities=20% Similarity=0.189 Sum_probs=91.9
Q ss_pred EEEEeecCCCCC--------C---CChHHHHHhhhCCC--CccEEEEcCCCCCH-------HHHHHHhhhCCcEEEeccC
Q 029629 4 VLAIGDLHIPHR--------A---SDLPQKFKSMLVPG--KIQHIICTGNLSIK-------EVHDYLKSLCPDLHVTRGE 63 (190)
Q Consensus 4 i~~iSD~H~~~~--------~---~~~~~~l~~~~~~~--~~D~vi~~GDl~~~-------~~~~~l~~l~~~~~~v~GN 63 (190)
|.++||+|+... . .++.+.+.+.+++. ++|+|+++||+++. +.++.|+++..|+++|+||
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GN 80 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGN 80 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCC
Confidence 468999998621 1 13344555544433 89999999999962 3455666665679999999
Q ss_pred CCCCC-------------C-----------------------CCcceE--------------------------E-Ee--
Q 029629 64 YDEDS-------------R-----------------------YPETKT--------------------------L-TI-- 78 (190)
Q Consensus 64 HD~~~-------------~-----------------------~p~~~~--------------------------~-~~-- 78 (190)
||.+. . ++.... + ..
T Consensus 81 HD~~~~~~~~~~~~l~~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~ 160 (232)
T cd07393 81 HDYWWGSASKLRKALEESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKK 160 (232)
T ss_pred ccccCCCHHHHHHHHHhcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99731 0 000000 0 00
Q ss_pred ---CCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcce-----EEEcCeEEEccCCccCCC
Q 029629 79 ---GQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKA-----YKHEGGVVINPGSATGAY 140 (190)
Q Consensus 79 ---~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~-----~~~~~~~~inpGs~~~~~ 140 (190)
++.+++++|+++.....+...+..++++.+++++++||+|.+.. ...+|+.+.++.+.+..|
T Consensus 161 ~~~~~~~i~~~H~p~~~~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~~ 230 (232)
T cd07393 161 REKEKIKIVMLHYPPANENGDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLNF 230 (232)
T ss_pred CCCCCCEEEEECCCCcCCCCCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhcCc
Confidence 02378999988765545556677777778999999999998765 347899998888876543
No 27
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.75 E-value=1.6e-17 Score=125.05 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=96.0
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC--------H--------------------------HHHH
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI--------K--------------------------EVHD 48 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--------~--------------------------~~~~ 48 (190)
||+.+||.|+. -++++.+.+.+.+.++|+|+++||+.. . ..++
T Consensus 7 kilA~s~~~g~---~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~ 83 (255)
T PF14582_consen 7 KILAISNFRGD---FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFR 83 (255)
T ss_dssp EEEEEE--TT----HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHH
T ss_pred hheeecCcchH---HHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHH
Confidence 79999999974 256778888787789999999999985 0 3455
Q ss_pred HHhhhCCcEEEeccCCCCCCC------------CC-------------------------------cce-----------
Q 029629 49 YLKSLCPDLHVTRGEYDEDSR------------YP-------------------------------ETK----------- 74 (190)
Q Consensus 49 ~l~~l~~~~~~v~GNHD~~~~------------~p-------------------------------~~~----------- 74 (190)
.|..+..|+++||||||.+.. .| +..
T Consensus 84 ~L~~~~~p~~~vPG~~Dap~~~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~LrYP~weaey 163 (255)
T PF14582_consen 84 ILGELGVPVFVVPGNMDAPERFFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGMGGEITDDQREEEFKLRYPAWEAEY 163 (255)
T ss_dssp HHHCC-SEEEEE--TTS-SHHHHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE-SEEESSS-BCSSS-EEEHHHHHH
T ss_pred HHHhcCCcEEEecCCCCchHHHHHHHHhccceeccceeeeeeeecccCCcEEEEecCccccCCCccccccccchHHHHHH
Confidence 566677899999999998630 00 000
Q ss_pred ----EEEe-CCEEEEEeeCCc-cC---CCCCHHHHHHHhhccCccEEEeCCCCCcc-eEEEcCeEEEccCCccCCCCCCC
Q 029629 75 ----TLTI-GQFKLGICHGHQ-VI---PWGDLDSLAMLQRQLDVDILVTGHTHQFK-AYKHEGGVVINPGSATGAYSSFT 144 (190)
Q Consensus 75 ----~~~~-~~~~i~~~Hg~~-~~---~~~~~~~~~~~~~~~~~~~vi~GHtH~~~-~~~~~~~~~inpGs~~~~~~~~~ 144 (190)
.-++ .-.+|+++|-.| .. ...+++.+..+++.+++++++|||.|... ..+.+.+.+|||||+..
T Consensus 164 ~lk~l~elk~~r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL~~------ 237 (255)
T PF14582_consen 164 SLKFLRELKDYRKILLFHTPPDLHKGLIHVGSAAVRDLIKTYNPDIVLCGHIHESHGKESLGKTLVVNPGSLAE------ 237 (255)
T ss_dssp HHGGGGGCTSSEEEEEESS-BTBCTCTBTTSBHHHHHHHHHH--SEEEE-SSS-EE--EEETTEEEEE--BGGG------
T ss_pred HHHHHHhcccccEEEEEecCCccCCCcccccHHHHHHHHHhcCCcEEEecccccchhhHHhCCEEEecCccccc------
Confidence 0001 236788999777 21 12356788899999999999999999855 46789999999999983
Q ss_pred CCCCCeEEEEEEeCCEEEE
Q 029629 145 FDVNPSFVLMDIDGLRVVV 163 (190)
Q Consensus 145 ~~~~~~~~ll~i~~~~~~~ 163 (190)
+.|+++++....+..
T Consensus 238 ----G~yAvI~l~~~~v~~ 252 (255)
T PF14582_consen 238 ----GDYAVIDLEQDKVEF 252 (255)
T ss_dssp ----TEEEEEETTTTEEEE
T ss_pred ----CceeEEEeccccccc
Confidence 689999999888754
No 28
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.75 E-value=1.9e-17 Score=135.28 Aligned_cols=168 Identities=18% Similarity=0.122 Sum_probs=101.1
Q ss_pred eEEEEEeecCCCCCCCC------h---HHHHHhhhCCCCccEEEEcCCCCCH------HH--------HHHHhhhCCcEE
Q 029629 2 VLVLAIGDLHIPHRASD------L---PQKFKSMLVPGKIQHIICTGNLSIK------EV--------HDYLKSLCPDLH 58 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~------~---~~~l~~~~~~~~~D~vi~~GDl~~~------~~--------~~~l~~l~~~~~ 58 (190)
|||+++||+|++..... . ++.+.+.+.+++||+|+++||+++. .. ++.|++.+.|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 89999999998643211 1 2233333457899999999999982 11 223444457899
Q ss_pred EeccCCCCCC------C--------CC------cceEEEe-------------------------CCEEEEEeeCCc---
Q 029629 59 VTRGEYDEDS------R--------YP------ETKTLTI-------------------------GQFKLGICHGHQ--- 90 (190)
Q Consensus 59 ~v~GNHD~~~------~--------~p------~~~~~~~-------------------------~~~~i~~~Hg~~--- 90 (190)
+++||||... . .+ ....+.+ ...+|++.|...
T Consensus 81 ~I~GNHD~~~~~~~~~~~~~~ll~~~~~v~v~~~~~~v~i~g~~i~~lP~~~~~~~~~~~~~l~~~~~~ill~H~~v~g~ 160 (340)
T PHA02546 81 VLVGNHDMYYKNTIRPNAPTELLGQYDNITVIDEPTTVDFDGCSIDLIPWICKENTEEILEFIKNSKSEYCVGHWELNGF 160 (340)
T ss_pred EEccCCCcccccccccCchHHHHhhCCCEEEeCCceEEEECCEEEEECCCCCHHHHHHHHHHhccCCCcEEEEeeEEecC
Confidence 9999999641 0 01 0011111 223566667321
Q ss_pred -cCCCCCH-HHH-HHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCC-CCCCeEEEEEEeCCEEEEEEE
Q 029629 91 -VIPWGDL-DSL-AMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTF-DVNPSFVLMDIDGLRVVVYVY 166 (190)
Q Consensus 91 -~~~~~~~-~~~-~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~-~~~~~~~ll~i~~~~~~~~~~ 166 (190)
..+.... ..+ ...+ .++++++.||+|.+.. ...+.+|||+-.- .+.+ +.+.+|.+++++.++ ++++
T Consensus 161 ~~~~g~~~~~~~~~~~~--~~fdyvALGHiH~~~~----~~~i~Y~GSp~~~--sf~E~~~~KG~~~vd~~~~~--~efi 230 (340)
T PHA02546 161 YFYKGMKSDHGLDPDFL--KKYKQVWSGHFHTISE----KGNVTYIGTPYTL--TAGDENDPRGFWVFDTETHK--LEFI 230 (340)
T ss_pred cccCCCccccCCChhHh--ccCCEEeecccccCcc----cCCEEEeCCceee--CccccCCCCeEEEEECCCCc--eEEE
Confidence 1000000 000 0111 4688999999998753 2347889998753 3333 457899999887764 6788
Q ss_pred EeeCCeEEEEEEE
Q 029629 167 ELIDGEVKVDKID 179 (190)
Q Consensus 167 ~l~~~~~~~~~~~ 179 (190)
++....++...++
T Consensus 231 p~~~~~~~~i~~~ 243 (340)
T PHA02546 231 ANPTTWHRRITYP 243 (340)
T ss_pred eCCCceEEEEEec
Confidence 8877777654443
No 29
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.74 E-value=2.4e-17 Score=125.24 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=89.5
Q ss_pred eEEEEEeecCCCCCCC---------ChHHHHHhhhCCCCccEEEEcCCCCCH------------HHHHHHhhhCCcEEEe
Q 029629 2 VLVLAIGDLHIPHRAS---------DLPQKFKSMLVPGKIQHIICTGNLSIK------------EVHDYLKSLCPDLHVT 60 (190)
Q Consensus 2 mri~~iSD~H~~~~~~---------~~~~~l~~~~~~~~~D~vi~~GDl~~~------------~~~~~l~~l~~~~~~v 60 (190)
+||+++||+|+..... ...+.+.+++++.+||+|+++||+++. +.++.+.+...|++++
T Consensus 3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 82 (199)
T cd07383 3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAAT 82 (199)
T ss_pred eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEE
Confidence 7999999999854321 223456666667899999999999971 2223333345799999
Q ss_pred ccCCCCCCCCCcce-------EEE------eCCEEEEEeeCCccCC---CC------------------CHHHHHHHhhc
Q 029629 61 RGEYDEDSRYPETK-------TLT------IGQFKLGICHGHQVIP---WG------------------DLDSLAMLQRQ 106 (190)
Q Consensus 61 ~GNHD~~~~~p~~~-------~~~------~~~~~i~~~Hg~~~~~---~~------------------~~~~~~~~~~~ 106 (190)
+||||....+.... ..+ .....++++|-++... +. ...-+..+++.
T Consensus 83 ~GNHD~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~ 162 (199)
T cd07383 83 FGNHDGYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLER 162 (199)
T ss_pred CccCCCCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHc
Confidence 99999653322110 011 1235688999544211 00 11224455577
Q ss_pred cCccEEEeCCCCCcceEEEcCeEEEccCCccC
Q 029629 107 LDVDILVTGHTHQFKAYKHEGGVVINPGSATG 138 (190)
Q Consensus 107 ~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~ 138 (190)
.+++++++||+|........+...+|||+.+.
T Consensus 163 ~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g 194 (199)
T cd07383 163 GDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTG 194 (199)
T ss_pred CCeEEEEeCCCCCcceecccCCEEEeCCCCCC
Confidence 89999999999997655545667899999874
No 30
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.73 E-value=7.9e-17 Score=127.90 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=47.3
Q ss_pred eEEEEEeecCCCCCCC-ChHHHHHhhhCCCCccEEEEcCCCCC-------HHHHHHHhhhC--CcEEEeccCCCCC
Q 029629 2 VLVLAIGDLHIPHRAS-DLPQKFKSMLVPGKIQHIICTGNLSI-------KEVHDYLKSLC--PDLHVTRGEYDED 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~-~~~~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~~l~--~~~~~v~GNHD~~ 67 (190)
|||+++||+|...... ...+++.+.+++.+||+|+++||+++ .+..+.|+++. .|+++|+||||..
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~ 125 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRP 125 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcc
Confidence 7999999999853211 12344444456789999999999997 12444555554 5899999999975
No 31
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.72 E-value=3.6e-17 Score=121.09 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=82.6
Q ss_pred EEEeecCCCCCCC------------ChHHHHHhhhCC--CCccEEEEcCCCCCH----HHHHHHhhhCCcEEEeccCCCC
Q 029629 5 LAIGDLHIPHRAS------------DLPQKFKSMLVP--GKIQHIICTGNLSIK----EVHDYLKSLCPDLHVTRGEYDE 66 (190)
Q Consensus 5 ~~iSD~H~~~~~~------------~~~~~l~~~~~~--~~~D~vi~~GDl~~~----~~~~~l~~l~~~~~~v~GNHD~ 66 (190)
.++||+|++.... +..+++.+.+.+ .++|.|+++||+++. ...+.++++..|+++|+||||.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~l~~~~~~~~~v~GNHD~ 81 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTELELLSRLNGRKHLIKGNHDS 81 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHHHHHHHhCCCCeEEEeCCCCc
Confidence 6899999965321 012232222322 368999999999983 2256777777789999999997
Q ss_pred CCC------------CCcceEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccC
Q 029629 67 DSR------------YPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPG 134 (190)
Q Consensus 67 ~~~------------~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpG 134 (190)
... ++....++.++.+++++|++...... ..+.+++++||||.+.....- +..+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~H~~~~~~~~----------~~~~d~vi~GHtH~~~~~~~~-~~~~n~~ 150 (168)
T cd07390 82 SLERKLLAFLLKFESVLQAVRLKIGGRRVYLSHYPILEWNG----------LDRGSWNLHGHIHSNSPDIGP-PRRINVG 150 (168)
T ss_pred hhhhcccccccccceeeeEEEEEECCEEEEEEeCCcccCCC----------CCCCeEEEEeeeCCCCCCCCC-CceEEEe
Confidence 632 34556778899999999965432110 257799999999998875411 4688887
Q ss_pred C
Q 029629 135 S 135 (190)
Q Consensus 135 s 135 (190)
.
T Consensus 151 ~ 151 (168)
T cd07390 151 V 151 (168)
T ss_pred E
Confidence 6
No 32
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.72 E-value=8.9e-17 Score=125.04 Aligned_cols=132 Identities=18% Similarity=0.149 Sum_probs=86.2
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhh-C-C-------CCccEEEEcCCCCC-----HHHHHHHhhhC--CcEEEeccCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSML-V-P-------GKIQHIICTGNLSI-----KEVHDYLKSLC--PDLHVTRGEYD 65 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~-~-~-------~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~~~~v~GNHD 65 (190)
|||+++||+|++. ..+.+.+.++- . + .+.|.++++||++| .++++++.++. .++++|+||||
T Consensus 1 ~~i~vigDIHG~~--~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCY--DELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCH--HHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCcH
Confidence 7999999999864 23444444321 1 1 13689999999999 47888888763 46899999999
Q ss_pred CCC--------------------------------------CCCcceEEEeCCEEEEEeeCCccCCC-CCH-HHH-----
Q 029629 66 EDS--------------------------------------RYPETKTLTIGQFKLGICHGHQVIPW-GDL-DSL----- 100 (190)
Q Consensus 66 ~~~--------------------------------------~~p~~~~~~~~~~~i~~~Hg~~~~~~-~~~-~~~----- 100 (190)
... .+|. ..++++.+++++||...... ... ..+
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~--~~~~~~~~~~~vHag~~~~~~~~~~~~~~~~~~ 156 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPS--HLVLDEGKLVVAHAGIKEEMIGRDSKRVRSFAL 156 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCc--EEEeCCCcEEEEeCCCChHhccccchhheeeee
Confidence 631 1121 22344457899998743111 000 000
Q ss_pred ----------------HHHh-hccCccEEEeCCCCCcceEEEcCeEEEccCCcc
Q 029629 101 ----------------AMLQ-RQLDVDILVTGHTHQFKAYKHEGGVVINPGSAT 137 (190)
Q Consensus 101 ----------------~~~~-~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~ 137 (190)
..+. ...+.+++++||||.+.....++...|++||+-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~GHt~~~~~~~~~~~i~IDtGav~ 210 (234)
T cd07423 157 YGDTTGETDEFGLPVRRDWAKEYRGDALVVYGHTPVPEPRWLNNTINIDTGCVF 210 (234)
T ss_pred cccccCCcCCCCCccchhhHhhCCCCeEEEECCCCCccceEeCCEEEEECCCCC
Confidence 0011 113457899999999988888899999999975
No 33
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.71 E-value=5.5e-17 Score=124.95 Aligned_cols=131 Identities=19% Similarity=0.129 Sum_probs=87.3
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhC-CCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEeccCCCCCC-------
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLV-PGKIQHIICTGNLSI-----KEVHDYLKSLCPDLHVTRGEYDEDS------- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~~------- 68 (190)
.|++++||+|++. ..+.+.+.+ ++ +.+.|.++++||++| .++++++.+. .+++|+||||...
T Consensus 17 ~ri~vigDIHG~~--~~L~~lL~~-i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~--~~~~v~GNHE~~~l~~~~~~ 91 (218)
T PRK11439 17 RHIWLVGDIHGCF--EQLMRKLRH-CRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH--WVRAVRGNHEQMALDALASQ 91 (218)
T ss_pred CeEEEEEcccCCH--HHHHHHHHh-cCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC--CceEeeCchHHHHHHHHHCC
Confidence 4899999999863 234444444 33 236899999999999 4788888763 4789999999431
Q ss_pred --------------------------------CCCcceEEEeCCEEEEEeeCCccCCCC------C-------HHHHHHH
Q 029629 69 --------------------------------RYPETKTLTIGQFKLGICHGHQVIPWG------D-------LDSLAML 103 (190)
Q Consensus 69 --------------------------------~~p~~~~~~~~~~~i~~~Hg~~~~~~~------~-------~~~~~~~ 103 (190)
++|....++.++.+++++|++...... . .+.+...
T Consensus 92 ~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~ 171 (218)
T PRK11439 92 QMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVYEWQKDVDLHQVLWSRSRLGER 171 (218)
T ss_pred ccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCchhhhccCCccceEEcChhhhhc
Confidence 123333344556678999987321110 0 0111111
Q ss_pred hh---ccCccEEEeCCCCCcceEEEcCeEEEccCCcc
Q 029629 104 QR---QLDVDILVTGHTHQFKAYKHEGGVVINPGSAT 137 (190)
Q Consensus 104 ~~---~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~ 137 (190)
.. ..+.+++++||||.+.....++...|++||+-
T Consensus 172 ~~~~~~~~~~~vv~GHT~~~~~~~~~~~i~IDtGav~ 208 (218)
T PRK11439 172 QKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVF 208 (218)
T ss_pred cccccccCCCEEEECCccCCCccccCCEEEEECCCCC
Confidence 11 12557899999999988888899999999974
No 34
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.70 E-value=6e-17 Score=119.54 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=80.9
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH----HHH--HHHhhhCCcEEEeccCCCCCCC--------
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK----EVH--DYLKSLCPDLHVTRGEYDEDSR-------- 69 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~----~~~--~~l~~l~~~~~~v~GNHD~~~~-------- 69 (190)
|+++||+|++... ....+.+...+.++|+++++||+++. +.. ........|+++|+||||.+..
T Consensus 1 ~~~iSDlH~~~~~--~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~~~~~~~~~~~v~~v~GNHD~~~~~~G~~~w~ 78 (166)
T cd07404 1 IQYLSDLHLEFED--NLADLLNFPIAPDADILVLAGDIGYLTDAPRFAPLLLALKGFEPVIYVPGNHEFYVRIIGTTLWS 78 (166)
T ss_pred CceEccccccCcc--ccccccccCCCCCCCEEEECCCCCCCcchHHHHHHHHhhcCCccEEEeCCCcceEEEEEeeeccc
Confidence 5799999986432 22222233356789999999999982 111 1222233689999999998531
Q ss_pred -CCc-------ceEEEeCCEEEEEeeCCccCC---C------CC---HHHHHHHhhccCccEEEeCCCCCcceEEEcCeE
Q 029629 70 -YPE-------TKTLTIGQFKLGICHGHQVIP---W------GD---LDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGV 129 (190)
Q Consensus 70 -~p~-------~~~~~~~~~~i~~~Hg~~~~~---~------~~---~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~ 129 (190)
++. ...-...+..++++|..+... + .. ...+.+++++.++++++|||+|.+.....+|+.
T Consensus 79 ~~~~~~~~~~~~~~~d~~~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~~~~g~~ 158 (166)
T cd07404 79 DISLFGEAAARMRMNDFRGKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDYRIGGTR 158 (166)
T ss_pred ccCccchHHHHhCCCCCCCCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceEEECCEE
Confidence 110 111123357799999766421 1 01 122445556789999999999999888888876
Q ss_pred E-Ecc
Q 029629 130 V-INP 133 (190)
Q Consensus 130 ~-inp 133 (190)
+ .||
T Consensus 159 ~~~np 163 (166)
T cd07404 159 VLSNQ 163 (166)
T ss_pred EEecC
Confidence 4 444
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.69 E-value=1.9e-16 Score=122.27 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=47.7
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC--HHHHHHHhhhCCcEEEeccCCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI--KEVHDYLKSLCPDLHVTRGEYDEDS 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
.||+++||+|+... ... .+.+++.+||.|+++||+++ .+.++.|+++..|+++|+||||.+.
T Consensus 1 ~rIa~isDiHg~~~----~~~-~~~l~~~~pD~Vl~~GDi~~~~~~~~~~l~~l~~p~~~V~GNHD~~~ 64 (238)
T cd07397 1 LRIAIVGDVHGQWD----LED-IKALHLLQPDLVLFVGDFGNESVQLVRAISSLPLPKAVILGNHDAWY 64 (238)
T ss_pred CEEEEEecCCCCch----HHH-HHHHhccCCCEEEECCCCCcChHHHHHHHHhCCCCeEEEcCCCcccc
Confidence 48999999997532 111 23455678999999999997 4667778877678999999999753
No 36
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.69 E-value=1.9e-15 Score=129.11 Aligned_cols=158 Identities=23% Similarity=0.359 Sum_probs=101.6
Q ss_pred eEEEEEeecCCCCCCC--ChHHHHHhhhC---------CCCccEEEEcCCCCCH---------------------HHHHH
Q 029629 2 VLVLAIGDLHIPHRAS--DLPQKFKSMLV---------PGKIQHIICTGNLSIK---------------------EVHDY 49 (190)
Q Consensus 2 mri~~iSD~H~~~~~~--~~~~~l~~~~~---------~~~~D~vi~~GDl~~~---------------------~~~~~ 49 (190)
++++++||+|++.... .....|.+++. ..++|.++++||+++. .+.++
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~ 323 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEY 323 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHH
Confidence 5899999999764321 11344555554 4679999999999972 23445
Q ss_pred HhhhC--CcEEEeccCCCCCCC--------------CC--------cceEEEeCCEEEEEeeCCccC------CC---CC
Q 029629 50 LKSLC--PDLHVTRGEYDEDSR--------------YP--------ETKTLTIGQFKLGICHGHQVI------PW---GD 96 (190)
Q Consensus 50 l~~l~--~~~~~v~GNHD~~~~--------------~p--------~~~~~~~~~~~i~~~Hg~~~~------~~---~~ 96 (190)
|+++. .|+++++||||.... ++ ....++++|.+++++||.... +. ..
T Consensus 324 L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~idDl~~~i~~~s~~~ 403 (504)
T PRK04036 324 LKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRSIDDVISLIPGASYEK 403 (504)
T ss_pred HHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCCHHHHHhhcccccccC
Confidence 55553 489999999998531 11 123467789999999997632 11 11
Q ss_pred H-HHHHHHhh------------------------ccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCC-----CCC
Q 029629 97 L-DSLAMLQR------------------------QLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSF-----TFD 146 (190)
Q Consensus 97 ~-~~~~~~~~------------------------~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~-----~~~ 146 (190)
+ ..+...++ ..-++++++||+|.+.....+|+.++|+||+.... .+ -..
T Consensus 404 p~~~m~~~l~~rHlaPt~p~~~~~~p~~~D~lvi~~~Pdv~~~GH~H~~~~~~~~g~~~IN~gsf~~~t-~fq~~~~~~p 482 (504)
T PRK04036 404 PGKAMEELLKRRHLAPIYGGRTPIAPEKEDYLVIDEVPDIFHTGHVHINGYGKYRGVLLINSGTWQAQT-EFQKRVNIVP 482 (504)
T ss_pred HHHHHHHHHHhcccCCCCCCCEEeCcCCCCCEEEecCCCEEEeCCCCccceEEECCEEEEECCcccccc-cccceeccCC
Confidence 1 11222222 02358999999999999889999999999987420 00 012
Q ss_pred CCCeEEEEEEeCCE
Q 029629 147 VNPSFVLMDIDGLR 160 (190)
Q Consensus 147 ~~~~~~ll~i~~~~ 160 (190)
.++...+++++...
T Consensus 483 ~~~~~~lv~l~tl~ 496 (504)
T PRK04036 483 TPARVPIVDLDTLE 496 (504)
T ss_pred CCCEEEEEECCCCc
Confidence 34556666655443
No 37
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.69 E-value=1.1e-16 Score=133.24 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=95.3
Q ss_pred eEEEEEeecCCCCCC---CC----hH---HHHHhhhCCCCccEEEEcCCCCCH---------HHHHHHhhh---CCcEEE
Q 029629 2 VLVLAIGDLHIPHRA---SD----LP---QKFKSMLVPGKIQHIICTGNLSIK---------EVHDYLKSL---CPDLHV 59 (190)
Q Consensus 2 mri~~iSD~H~~~~~---~~----~~---~~l~~~~~~~~~D~vi~~GDl~~~---------~~~~~l~~l---~~~~~~ 59 (190)
|||+|+||+|++... .. .. ..+.+++.+.++|+|+++||++|. .+.+.|+++ +.|+|+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 899999999997221 11 11 233344457889999999999991 334444444 479999
Q ss_pred eccCCCCCCCCCc---------ceEE-----------------------------------------------------E
Q 029629 60 TRGEYDEDSRYPE---------TKTL-----------------------------------------------------T 77 (190)
Q Consensus 60 v~GNHD~~~~~p~---------~~~~-----------------------------------------------------~ 77 (190)
++||||....... ..+. .
T Consensus 81 I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (390)
T COG0420 81 IAGNHDSPSRLSEASPLLLLNNLGLHGVVGRLVHEIRPPEIVAAPWLIPGPDPDVVFFLGLNGLEKEQFELLLHKGLLSA 160 (390)
T ss_pred ecCCCCchhccccccchHHHHcCCceeecccceecccccchhcceeeeccCCCcceeeeccCCchHHHHHHHHhHhHHhh
Confidence 9999998741100 0000 0
Q ss_pred e---CCEEEEEeeCCcc----CCCC-C-HHHH-HHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCC
Q 029629 78 I---GQFKLGICHGHQV----IPWG-D-LDSL-AMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDV 147 (190)
Q Consensus 78 ~---~~~~i~~~Hg~~~----~~~~-~-~~~~-~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~ 147 (190)
. ....|++.|.... .... . .... ...+....++++..||.|.+.........+.+|||+-.. .......
T Consensus 161 ~~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvALGHiH~~~~~~~~~~~i~y~GS~~~~-~f~E~~~ 239 (390)
T COG0420 161 LDPDDDPSILVLHQSIDALTSGAERDLALGTVDLSLLPKGGFDYVALGHIHKRQVIPKEDPPIVYPGSPERY-SFGEEGE 239 (390)
T ss_pred cCCccCceeeehhhhhcccccCCccceEEcccccccccCCCcceEEcCCcccccccCCCCCceecCCCceec-chhHcCC
Confidence 0 1234555554311 0000 0 0000 112222338999999999999877666556799999753 2233456
Q ss_pred CCeEEEEEEeCCE
Q 029629 148 NPSFVLMDIDGLR 160 (190)
Q Consensus 148 ~~~~~ll~i~~~~ 160 (190)
..++.+++++.+.
T Consensus 240 ~k~~~~v~~~~~~ 252 (390)
T COG0420 240 RKGVVLVEFSGGK 252 (390)
T ss_pred cccEEEEEecCCc
Confidence 6677899999885
No 38
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.67 E-value=1.6e-16 Score=115.51 Aligned_cols=119 Identities=22% Similarity=0.193 Sum_probs=77.3
Q ss_pred eEEEEEeecCCCCCCCC-hHHHHHhhhCCCCccEEEEcCCCCCH-----HH------HHHHhhhCCcEEEeccCCCCCCC
Q 029629 2 VLVLAIGDLHIPHRASD-LPQKFKSMLVPGKIQHIICTGNLSIK-----EV------HDYLKSLCPDLHVTRGEYDEDSR 69 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~-~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~------~~~l~~l~~~~~~v~GNHD~~~~ 69 (190)
|||+++||+|+...... ....+.+...+.++|+|+++||+++. .. .........|+++++||||....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 89999999998532110 02333444456889999999999982 11 12223344799999999998730
Q ss_pred ------------C------------C-----------------------------------cceEEEeCCEEEEEeeCCc
Q 029629 70 ------------Y------------P-----------------------------------ETKTLTIGQFKLGICHGHQ 90 (190)
Q Consensus 70 ------------~------------p-----------------------------------~~~~~~~~~~~i~~~Hg~~ 90 (190)
. + ..........+|+++|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~ 160 (200)
T PF00149_consen 81 NSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPP 160 (200)
T ss_dssp HHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSS
T ss_pred ccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEEEecCC
Confidence 0 0 0011123457899999887
Q ss_pred cCCCCC----------HHHHHHHhhccCccEEEeCCCCCc
Q 029629 91 VIPWGD----------LDSLAMLQRQLDVDILVTGHTHQF 120 (190)
Q Consensus 91 ~~~~~~----------~~~~~~~~~~~~~~~vi~GHtH~~ 120 (190)
...... ...+..+.+..+++++++||+|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 161 YSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp STTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred CCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 643322 234667778899999999999974
No 39
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.66 E-value=2.2e-15 Score=115.75 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=89.9
Q ss_pred eEEEEEeecCCCCCC-CC-h---HHHHHhhhCCCCccEEEEcCCCCCH--------HHHHHHhhh---CCcEEEeccCCC
Q 029629 2 VLVLAIGDLHIPHRA-SD-L---PQKFKSMLVPGKIQHIICTGNLSIK--------EVHDYLKSL---CPDLHVTRGEYD 65 (190)
Q Consensus 2 mri~~iSD~H~~~~~-~~-~---~~~l~~~~~~~~~D~vi~~GDl~~~--------~~~~~l~~l---~~~~~~v~GNHD 65 (190)
.+|+++||+|..... .. + .+.+.+.+++.++|+|+++||+++. ...+.++++ ..|+++++||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 479999999974221 11 1 1233333445789999999999982 122334444 478999999999
Q ss_pred CCCCCC-----------cceEEEe-CCEEEEEeeCCccCCC-------------CCHHHHHHHhhcc-CccEEEeCCCCC
Q 029629 66 EDSRYP-----------ETKTLTI-GQFKLGICHGHQVIPW-------------GDLDSLAMLQRQL-DVDILVTGHTHQ 119 (190)
Q Consensus 66 ~~~~~p-----------~~~~~~~-~~~~i~~~Hg~~~~~~-------------~~~~~~~~~~~~~-~~~~vi~GHtH~ 119 (190)
....+. +..+.+. +...|+++|..+.... ...+.+.++++++ ++.++++||.|.
T Consensus 81 ~~~~ld~~~~~~ql~WL~~~L~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~ 160 (214)
T cd07399 81 LVLALEFGPRDEVLQWANEVLKKHPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHG 160 (214)
T ss_pred chhhCCCCCCHHHHHHHHHHHHHCCCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCC
Confidence 653221 1111112 2356788886553211 0122455667665 799999999999
Q ss_pred cceEEEc-----Ce----EEEccCCccCCCCCCCCCCCCeEEEEEEeCCE
Q 029629 120 FKAYKHE-----GG----VVINPGSATGAYSSFTFDVNPSFVLMDIDGLR 160 (190)
Q Consensus 120 ~~~~~~~-----~~----~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~~ 160 (190)
....... |. .+.+... ...++.+.|.++++++++
T Consensus 161 ~~~~~~~~~~~~g~~v~~~~~~~q~-------~~~~g~~~~r~~~f~~~~ 203 (214)
T cd07399 161 AGRTTLVSVGDAGRTVHQMLADYQG-------EPNGGNGFLRLLEFDPDN 203 (214)
T ss_pred CceEEEcccCCCCCEeeEEeecccC-------CCCCCcceEEEEEEecCC
Confidence 8765541 11 1122211 123346789999998664
No 40
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.66 E-value=5.1e-15 Score=117.68 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=108.9
Q ss_pred eEEEEEeecCCC--CCCCChHHHHHhhhCCCCccEEEEcCCCCC---------H---HHHH-HHhh--hCCcEEEeccCC
Q 029629 2 VLVLAIGDLHIP--HRASDLPQKFKSMLVPGKIQHIICTGNLSI---------K---EVHD-YLKS--LCPDLHVTRGEY 64 (190)
Q Consensus 2 mri~~iSD~H~~--~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~---------~---~~~~-~l~~--l~~~~~~v~GNH 64 (190)
+++++++|+=.. ....++.+.+.+++++.++|+||++||++. . +.++ .+.. +..|+++++|||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 479999999863 111234556666666678999999999962 1 1122 2222 346999999999
Q ss_pred CCCCC-----------------CCc-ceEEEeC------C----------------------------------------
Q 029629 65 DEDSR-----------------YPE-TKTLTIG------Q---------------------------------------- 80 (190)
Q Consensus 65 D~~~~-----------------~p~-~~~~~~~------~---------------------------------------- 80 (190)
|.... +|. ...+..+ +
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~ 160 (277)
T cd07378 81 DYSGNVSAQIDYTKRPNSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKT 160 (277)
T ss_pred ccCCCchheeehhccCCCCCccCcchheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHH
Confidence 97631 111 1111111 2
Q ss_pred -------EEEEEeeCCccCCC--C----CHHHHHHHhhccCccEEEeCCCCCcceEEEc--CeEEEccCCccCCCCCCC-
Q 029629 81 -------FKLGICHGHQVIPW--G----DLDSLAMLQRQLDVDILVTGHTHQFKAYKHE--GGVVINPGSATGAYSSFT- 144 (190)
Q Consensus 81 -------~~i~~~Hg~~~~~~--~----~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~--~~~~inpGs~~~~~~~~~- 144 (190)
++|++.|.+++... . ....+..++++++++++++||+|.......+ ++.++..|+.+..+....
T Consensus 161 L~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~~~~~~~~~~~ 240 (277)
T cd07378 161 LAASTADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGAGSKARPSVKH 240 (277)
T ss_pred HHhcCCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeeecCCCCcEEEEeCCCcccCCCCCc
Confidence 34555554332111 0 1234566777889999999999998887776 899999998876542221
Q ss_pred -----------CCCCCeEEEEEEeCCEEEEEEEEee
Q 029629 145 -----------FDVNPSFVLMDIDGLRVVVYVYELI 169 (190)
Q Consensus 145 -----------~~~~~~~~ll~i~~~~~~~~~~~l~ 169 (190)
.....+|+++++++++++++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~~ 276 (277)
T cd07378 241 IDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDAD 276 (277)
T ss_pred cCcccccccccccCCCCEEEEEEecCEEEEEEECCC
Confidence 1245799999999999999888654
No 41
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.66 E-value=1.5e-15 Score=126.55 Aligned_cols=67 Identities=21% Similarity=0.160 Sum_probs=48.1
Q ss_pred CccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCC-CCCCeEEEEEEeCCE-EEEEEEEeeC-CeEEEEE
Q 029629 108 DVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTF-DVNPSFVLMDIDGLR-VVVYVYELID-GEVKVDK 177 (190)
Q Consensus 108 ~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~-~~~~~~~ll~i~~~~-~~~~~~~l~~-~~~~~~~ 177 (190)
++||+..||.|.++... +...+..+||+-. +++++ +...++.+++++.++ ..++.+++.. ..++..+
T Consensus 220 ~~dYvALGHlH~~Q~v~-~~~~vrYsGSpl~--~sFsE~~~~K~v~lVel~~~~~~~v~~i~l~~~~~l~~~~ 289 (407)
T PRK10966 220 PADYIALGHIHRAQKVG-GTEHIRYSGSPIP--LSFDELGKSKSVHLVEFDQGKLQSVTPLPVPVFQPMAVLK 289 (407)
T ss_pred ccCeeeccccccCcCCC-CCCcEEEcCCCCC--CCccccCCCCeEEEEEEcCCccceEEEEECCCCceeEEec
Confidence 47999999999998752 2346788999974 23333 456899999998664 6889999975 3444433
No 42
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.65 E-value=9.8e-16 Score=119.54 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=45.0
Q ss_pred EEEEEeecCCCCCCC---ChHHHHHhhhCCCCccEEEEcCCCCC--H---HHHHHHhhh-CCcEEEeccCCCCC
Q 029629 3 LVLAIGDLHIPHRAS---DLPQKFKSMLVPGKIQHIICTGNLSI--K---EVHDYLKSL-CPDLHVTRGEYDED 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~---~~~~~l~~~~~~~~~D~vi~~GDl~~--~---~~~~~l~~l-~~~~~~v~GNHD~~ 67 (190)
||+++||+|+..... ..++++.+.+++.++|+|+++||+++ . +.++.+.++ ..|+++|+||||.+
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNHDML 74 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCCCCC
Confidence 699999999753221 11234444455678999999999998 2 334444442 36899999999974
No 43
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.65 E-value=6.9e-14 Score=112.07 Aligned_cols=176 Identities=16% Similarity=0.197 Sum_probs=108.1
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhC-CCCccEEEEcCCCCCH----------HHHHHHhhh--CCcEEEeccCCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLV-PGKIQHIICTGNLSIK----------EVHDYLKSL--CPDLHVTRGEYDEDS 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~~----------~~~~~l~~l--~~~~~~v~GNHD~~~ 68 (190)
.|+++++|+|.... .-.+.+.++.+ ..++|+|+++||++.. ...+.++.+ ..|++.++||||...
T Consensus 5 ~~f~v~gD~~~~~~--~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~ 82 (294)
T cd00839 5 FKFAVFGDMGQNTN--NSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEADY 82 (294)
T ss_pred EEEEEEEECCCCCC--CcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCccccccc
Confidence 58999999997321 12344444443 3789999999999941 123334433 368999999999752
Q ss_pred CC-----------------------CcceEEEeCC--------------------------------------EEEEEee
Q 029629 69 RY-----------------------PETKTLTIGQ--------------------------------------FKLGICH 87 (190)
Q Consensus 69 ~~-----------------------p~~~~~~~~~--------------------------------------~~i~~~H 87 (190)
.. +....++.++ +.|++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H 162 (294)
T cd00839 83 NFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGH 162 (294)
T ss_pred CCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEec
Confidence 10 0011122221 2455555
Q ss_pred CCccCCC----------CCHHHHHHHhhccCccEEEeCCCCCcceEE----------------EcCeEEEccCCccCCCC
Q 029629 88 GHQVIPW----------GDLDSLAMLQRQLDVDILVTGHTHQFKAYK----------------HEGGVVINPGSATGAYS 141 (190)
Q Consensus 88 g~~~~~~----------~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~----------------~~~~~~inpGs~~~~~~ 141 (190)
-+.+... ...+.+..++++++++++++||+|...... .+++.+|..|+.|....
T Consensus 163 ~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~ 242 (294)
T cd00839 163 RPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEG 242 (294)
T ss_pred cCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccC
Confidence 3332211 112345677788899999999999866432 25788898888886553
Q ss_pred CCC-----------CCCCCeEEEEEEeCC-EEEEEEEEeeCCeEEEEEEEe
Q 029629 142 SFT-----------FDVNPSFVLMDIDGL-RVVVYVYELIDGEVKVDKIDF 180 (190)
Q Consensus 142 ~~~-----------~~~~~~~~ll~i~~~-~~~~~~~~l~~~~~~~~~~~~ 180 (190)
... .....+|+++++.++ .+..+++.-.++ --.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g-~v~D~f~i 292 (294)
T cd00839 243 LDPFSAPPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDG-VVIDSFWI 292 (294)
T ss_pred cCcccCCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCC-eEEEEEEE
Confidence 221 124468999999876 788888876544 23334444
No 44
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.63 E-value=1.9e-15 Score=116.35 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=49.0
Q ss_pred eEEEEEeecCCCCCCC-ChHHHHHhhhCCCCccEEEEcCCCCCH------HHHHHHhhhC--CcEEEeccCCCCCC
Q 029629 2 VLVLAIGDLHIPHRAS-DLPQKFKSMLVPGKIQHIICTGNLSIK------EVHDYLKSLC--PDLHVTRGEYDEDS 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~-~~~~~l~~~~~~~~~D~vi~~GDl~~~------~~~~~l~~l~--~~~~~v~GNHD~~~ 68 (190)
|||+++||+|...... +..+++.+.+++.+||+|+++||+++. ...+.++++. .|+++++||||...
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYS 77 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCccccc
Confidence 7999999999864322 123444455556789999999999982 3445566553 58999999999864
No 45
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.62 E-value=8.3e-15 Score=114.60 Aligned_cols=134 Identities=24% Similarity=0.325 Sum_probs=87.4
Q ss_pred EEEeecCCCCCCC--ChHHHHHhhhCCC-----CccEEEEcCCCCCH---------------------HHHHHHhhhC--
Q 029629 5 LAIGDLHIPHRAS--DLPQKFKSMLVPG-----KIQHIICTGNLSIK---------------------EVHDYLKSLC-- 54 (190)
Q Consensus 5 ~~iSD~H~~~~~~--~~~~~l~~~~~~~-----~~D~vi~~GDl~~~---------------------~~~~~l~~l~-- 54 (190)
+++||+|++.... ...+.+.+.++.. ++|.|+++||+++. .+.+.++++.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 6899999854321 1224555555333 57999999999973 1334445553
Q ss_pred CcEEEeccCCCCCCC-CC---------------------cceEEEeCCEEEEEeeCCccC------CC---CCHHHH-HH
Q 029629 55 PDLHVTRGEYDEDSR-YP---------------------ETKTLTIGQFKLGICHGHQVI------PW---GDLDSL-AM 102 (190)
Q Consensus 55 ~~~~~v~GNHD~~~~-~p---------------------~~~~~~~~~~~i~~~Hg~~~~------~~---~~~~~~-~~ 102 (190)
.++++++||||.... +| ....++++|.+++++||.... .. ..+.++ +.
T Consensus 82 ~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~~~~~~~~~~~~~~ 161 (243)
T cd07386 82 IKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIYHGRSIDDVVKLIPGLSYDKPGKAMEE 161 (243)
T ss_pred CeEEEeCCCCCcccccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEECCCCHHHHHHhCCCCCcccHHHHHHH
Confidence 579999999998631 11 223467789999999986521 00 011111 10
Q ss_pred H------------------------hhccCccEEEeCCCCCcceEEEcCeEEEccCCccC
Q 029629 103 L------------------------QRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATG 138 (190)
Q Consensus 103 ~------------------------~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~ 138 (190)
. .....++++++||+|.+.....+++.++||||+..
T Consensus 162 ~l~~~hl~P~~~~~~~~~~~~~~~~~~~~~p~vii~Gh~h~~~~~~~~~~~~vn~Gsf~~ 221 (243)
T cd07386 162 LLKRRHLAPIYGGRTPIAPEPEDYLVIDEVPDILHTGHVHVYGVGVYRGVLLVNSGTWQS 221 (243)
T ss_pred HHhhcccCCCCCCCEeeCCCCCCCEEecCCCCEEEECCCCchHhEEECCEEEEECCCCcC
Confidence 0 00124689999999999998889999999999874
No 46
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=99.59 E-value=1.5e-14 Score=111.69 Aligned_cols=109 Identities=27% Similarity=0.446 Sum_probs=77.6
Q ss_pred EEEEEeecCCCCCCC--------------ChHHHHHhhhCCCCccEEEEcCCCCC--------HHHHHHHhhhCCcEEEe
Q 029629 3 LVLAIGDLHIPHRAS--------------DLPQKFKSMLVPGKIQHIICTGNLSI--------KEVHDYLKSLCPDLHVT 60 (190)
Q Consensus 3 ri~~iSD~H~~~~~~--------------~~~~~l~~~~~~~~~D~vi~~GDl~~--------~~~~~~l~~l~~~~~~v 60 (190)
+.+++||+|+..... +.++++.+++++.++|.++++||+++ .+..++++++..++++|
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~V 95 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLILI 95 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEEE
Confidence 679999999864210 12334555556788999999999995 24456677776789999
Q ss_pred ccCCCCCC---CCCcceEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceE
Q 029629 61 RGEYDEDS---RYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAY 123 (190)
Q Consensus 61 ~GNHD~~~---~~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~ 123 (190)
+||||... .++....+.++++ +++||+.. + +.+ ..+.+++++||+|.....
T Consensus 96 ~GNHD~~~~~~~~~~~~~~~lg~~--~l~HGh~~-~--~~~-------~~~~d~~I~GH~HP~i~l 149 (225)
T TIGR00024 96 RGNHDALIPYIGLSGEESIRIGKY--LIFHGHAV-P--DEE-------DLDAKVLIFGHEHPAVKL 149 (225)
T ss_pred CCCCCCccccCCCCccceEEECCE--EEEeCCCC-C--Ccc-------cccCCEEEECCCCceEEE
Confidence 99999742 4566666778875 99999863 2 111 225789999999976554
No 47
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.58 E-value=2.2e-14 Score=100.23 Aligned_cols=111 Identities=26% Similarity=0.393 Sum_probs=77.5
Q ss_pred EEEeecCCCCCCCChHHHH-HhhhCCCCccEEEEcCCCCCH------HH---HHHHhhhCCcEEEeccCCCCCCCCCcce
Q 029629 5 LAIGDLHIPHRASDLPQKF-KSMLVPGKIQHIICTGNLSIK------EV---HDYLKSLCPDLHVTRGEYDEDSRYPETK 74 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l-~~~~~~~~~D~vi~~GDl~~~------~~---~~~l~~l~~~~~~v~GNHD~~~~~p~~~ 74 (190)
+++||+|..... ..... .....+.++|.|+++||+++. .. ...+.+...|+++++||||
T Consensus 1 ~~~gD~h~~~~~--~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD--------- 69 (131)
T cd00838 1 AVISDIHGNLEA--LEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD--------- 69 (131)
T ss_pred CeeecccCCccc--hHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce---------
Confidence 479999986432 11211 123456889999999999982 11 1234445579999999999
Q ss_pred EEEeCCEEEEEeeCCccCCCCC--------HHHHHHHhhccCccEEEeCCCCCcceEE--EcCeEEEccC
Q 029629 75 TLTIGQFKLGICHGHQVIPWGD--------LDSLAMLQRQLDVDILVTGHTHQFKAYK--HEGGVVINPG 134 (190)
Q Consensus 75 ~~~~~~~~i~~~Hg~~~~~~~~--------~~~~~~~~~~~~~~~vi~GHtH~~~~~~--~~~~~~inpG 134 (190)
|+++|.++...... ...+...+...+++++++||+|...... ..++.++++|
T Consensus 70 --------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~~~~~~~~v~~g 131 (131)
T cd00838 70 --------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERREPDGGGTLYINPG 131 (131)
T ss_pred --------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeeccccccCCCCceEEecCC
Confidence 99999877543211 3445566667899999999999988766 5567777765
No 48
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.58 E-value=4.5e-14 Score=112.55 Aligned_cols=165 Identities=21% Similarity=0.260 Sum_probs=96.3
Q ss_pred eEEEEEeecCCCC-CCC--ChHHHHHhhhCCCCccEEEEcCCCCCH-------HHHHHHh--hhCCcEEEeccCCCCCCC
Q 029629 2 VLVLAIGDLHIPH-RAS--DLPQKFKSMLVPGKIQHIICTGNLSIK-------EVHDYLK--SLCPDLHVTRGEYDEDSR 69 (190)
Q Consensus 2 mri~~iSD~H~~~-~~~--~~~~~l~~~~~~~~~D~vi~~GDl~~~-------~~~~~l~--~l~~~~~~v~GNHD~~~~ 69 (190)
|||+++||+|... ... +..+++.+.++..++|.++++|||++. ...++|+ .+..|++++|||||....
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVVPGNHDARVV 80 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCCCceEeeCCCCcCCch
Confidence 7999999999862 211 223344444566789999999999982 4556666 555789999999998740
Q ss_pred C---------------------Cc---------------------------ceEEEeCC---EEEEEeeCCccCC-C---
Q 029629 70 Y---------------------PE---------------------------TKTLTIGQ---FKLGICHGHQVIP-W--- 94 (190)
Q Consensus 70 ~---------------------p~---------------------------~~~~~~~~---~~i~~~Hg~~~~~-~--- 94 (190)
. +. ........ ..++++|.++... .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~ 160 (301)
T COG1409 81 NGEAFSDQFFNRYAVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGV 160 (301)
T ss_pred HHHHhhhhhcccCcceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEEecCCCCCCCCCcc
Confidence 0 00 00000111 2456666555422 1
Q ss_pred -----CCHHHHHHHhhccC--ccEEEeCCCCCc--ceEEEcCeEEEc----cCCccCCCCCCCCCCCCeEEEEEEeCCEE
Q 029629 95 -----GDLDSLAMLQRQLD--VDILVTGHTHQF--KAYKHEGGVVIN----PGSATGAYSSFTFDVNPSFVLMDIDGLRV 161 (190)
Q Consensus 95 -----~~~~~~~~~~~~~~--~~~vi~GHtH~~--~~~~~~~~~~in----pGs~~~~~~~~~~~~~~~~~ll~i~~~~~ 161 (190)
.+...+...+...+ ++++++||.|.. ......+..+.+ .++.... .........+..+++.....
T Consensus 161 ~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 238 (301)
T COG1409 161 DRVALRDAGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCS--QVFRGSATAFNTLDLDGPGV 238 (301)
T ss_pred ceeeeecchhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeeecccccCCccce--eecCCCccceeeeeecCCCe
Confidence 12233444555566 999999999998 666666666653 2222211 11223344455667666555
Q ss_pred EEEEEEe
Q 029629 162 VVYVYEL 168 (190)
Q Consensus 162 ~~~~~~l 168 (190)
.......
T Consensus 239 ~~~~~~~ 245 (301)
T COG1409 239 RVLVLAA 245 (301)
T ss_pred eEEEEec
Confidence 4444433
No 49
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=7.9e-15 Score=115.33 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=46.9
Q ss_pred eEEEEEeecCCCCCCCC---------hHHHHHhhhCCCCccEEEEcCCCCCH------------HHHHHHhhhC-CcEEE
Q 029629 2 VLVLAIGDLHIPHRASD---------LPQKFKSMLVPGKIQHIICTGNLSIK------------EVHDYLKSLC-PDLHV 59 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~---------~~~~l~~~~~~~~~D~vi~~GDl~~~------------~~~~~l~~l~-~~~~~ 59 (190)
|||+++||+|++..... .++++.+.+.++++|+|+++||+++. +.++.|++.. .|+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 89999999998643211 12344455556789999999999992 1223334444 68999
Q ss_pred eccCCCCC
Q 029629 60 TRGEYDED 67 (190)
Q Consensus 60 v~GNHD~~ 67 (190)
++||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999986
No 50
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=99.56 E-value=7.9e-15 Score=108.96 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=68.2
Q ss_pred EEEeecCCCCCCC--------------ChHHHHHhhhCCCCccEEEEcCCCCCH------HHHH-----HHhhhCCcEEE
Q 029629 5 LAIGDLHIPHRAS--------------DLPQKFKSMLVPGKIQHIICTGNLSIK------EVHD-----YLKSLCPDLHV 59 (190)
Q Consensus 5 ~~iSD~H~~~~~~--------------~~~~~l~~~~~~~~~D~vi~~GDl~~~------~~~~-----~l~~l~~~~~~ 59 (190)
+++||+|+..... +..+++.+++++.++|.|+++||+++. .... .+.....++++
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVIL 80 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEE
Confidence 5899999964210 123455666677899999999999971 1111 22223468999
Q ss_pred eccCCCCCCCC----Ccce-EEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEE
Q 029629 60 TRGEYDEDSRY----PETK-TLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYK 124 (190)
Q Consensus 60 v~GNHD~~~~~----p~~~-~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~ 124 (190)
|+||||..... +... .-.+...+++++||+..... .+.+++++||+| |....
T Consensus 81 i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~HG~~~~~~------------~~~~~~i~GH~H-P~~~~ 137 (172)
T cd07391 81 IRGNHDGGLPEILKDLNVEVVEGLLLGGFLFFHGHKPPPP------------LDAELVIIGHEH-PAIRL 137 (172)
T ss_pred EcccCccchhhhhhcCcEeecCCEEECCEEEEeCCCCCCc------------CCCCEEEEccCC-CcEEE
Confidence 99999986421 1111 01122357899999864221 357899999999 65543
No 51
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=99.56 E-value=9.2e-14 Score=115.73 Aligned_cols=180 Identities=17% Similarity=0.181 Sum_probs=119.2
Q ss_pred eEEEEEeecCCCCCCCCh---------HHHHHhhhCCCCccEEEEcCCCCCH---------HHHHHHhh-----------
Q 029629 2 VLVLAIGDLHIPHRASDL---------PQKFKSMLVPGKIQHIICTGNLSIK---------EVHDYLKS----------- 52 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~---------~~~l~~~~~~~~~D~vi~~GDl~~~---------~~~~~l~~----------- 52 (190)
|||++.||.|++++..+. .+.+.++.+++++|+|+..|||+.. .+++.|++
T Consensus 14 irILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le 93 (646)
T KOG2310|consen 14 IRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLE 93 (646)
T ss_pred eEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeE
Confidence 899999999998754321 2344455578899999999999971 34455441
Q ss_pred -------------------------hCCcEEEeccCCCCCCCC------------------------------C------
Q 029629 53 -------------------------LCPDLHVTRGEYDEDSRY------------------------------P------ 71 (190)
Q Consensus 53 -------------------------l~~~~~~v~GNHD~~~~~------------------------------p------ 71 (190)
++.||+.+.||||...+. |
T Consensus 94 ~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLlqKG 173 (646)
T KOG2310|consen 94 ILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILLQKG 173 (646)
T ss_pred EecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeeeccC
Confidence 125899999999987410 0
Q ss_pred -----------------------------cceEEEeCCEEEEEeeCCccCC---CCCHHHHHHHhhccCccEEEeCCCCC
Q 029629 72 -----------------------------ETKTLTIGQFKLGICHGHQVIP---WGDLDSLAMLQRQLDVDILVTGHTHQ 119 (190)
Q Consensus 72 -----------------------------~~~~~~~~~~~i~~~Hg~~~~~---~~~~~~~~~~~~~~~~~~vi~GHtH~ 119 (190)
.+...+-++++++++|...... ..-++.+..- =.|+++.||-|.
T Consensus 174 ~tklALYGLg~irDeRL~R~Fk~~~V~f~rPe~~e~dWFNllvlHQNr~~h~~tn~lpE~flp~----F~DlviWGHEHE 249 (646)
T KOG2310|consen 174 STKLALYGLGSIRDERLYRMFKNGKVTFLRPEEYEDDWFNLLVLHQNRSKHRPTNFLPEQFLPD----FLDLVIWGHEHE 249 (646)
T ss_pred ceeEEEeeccccchHHHHHHHHhCceEEecCccccccceeeEEEeecccCCCCcccCcHhHhhh----hhhheeeccccc
Confidence 0111134567888888543111 1112333222 278999999998
Q ss_pred cceE----EEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCCEEEEEEEEeeCC-eEEEEEEEeecccc
Q 029629 120 FKAY----KHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDG-EVKVDKIDFKKTAT 185 (190)
Q Consensus 120 ~~~~----~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~ 185 (190)
..+. ...+-+++.|||.........+..+....|++|.++....+-++|.+- +|.+.+|.+..-..
T Consensus 250 C~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~d~~~ 320 (646)
T KOG2310|consen 250 CKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLADHPD 320 (646)
T ss_pred cccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceecceeeeeeEecccCc
Confidence 6653 235678899999875433334556677889999988888888888754 47777777664433
No 52
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.51 E-value=5.8e-14 Score=102.68 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=77.7
Q ss_pred EEEeecCCCCCCC-Ch----------HHHHHhhhCCCCccEEEEcCCCCCH----------HHHHHHhhh-----CCcEE
Q 029629 5 LAIGDLHIPHRAS-DL----------PQKFKSMLVPGKIQHIICTGNLSIK----------EVHDYLKSL-----CPDLH 58 (190)
Q Consensus 5 ~~iSD~H~~~~~~-~~----------~~~l~~~~~~~~~D~vi~~GDl~~~----------~~~~~l~~l-----~~~~~ 58 (190)
+++||+|+..... .+ .+.+.+++++.+||.|+++||+++. +..+.+.++ ..|++
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLH 80 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEE
Confidence 3789999843222 12 1244555667899999999999972 122333332 35899
Q ss_pred EeccCCCCCCCCC--cceEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcce-EEEcCeEEEccCC
Q 029629 59 VTRGEYDEDSRYP--ETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKA-YKHEGGVVINPGS 135 (190)
Q Consensus 59 ~v~GNHD~~~~~p--~~~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~-~~~~~~~~inpGs 135 (190)
+|+||||.....+ ......+...-+++.|... ..+..+.+++++++||+|.... ...+|+..+...|
T Consensus 81 ~v~GNHD~~~~~~~~~~~~~~~~~~~~~l~H~p~----------~~~~~~~~~~~~l~GH~H~~~~~~~~~~~~e~~~~~ 150 (156)
T cd08165 81 VVVGNHDIGFHYEMTTYKLERFEKVFILLQHFPL----------YRLLQWLKPRLVLSGHTHSFCEVTHPDGTPEVTVPS 150 (156)
T ss_pred EEcCCCCcCCCCccCHHHHHHHHHHeeeeeCChH----------HHHHHhhCCCEEEEcccCCCceeEEECCEEEEEEec
Confidence 9999999864221 1111111122288888432 1133455778999999998544 4578888888888
Q ss_pred ccC
Q 029629 136 ATG 138 (190)
Q Consensus 136 ~~~ 138 (190)
++.
T Consensus 151 ~~~ 153 (156)
T cd08165 151 FSW 153 (156)
T ss_pred cee
Confidence 774
No 53
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=99.50 E-value=2.5e-13 Score=96.65 Aligned_cols=122 Identities=19% Similarity=0.138 Sum_probs=80.1
Q ss_pred CeEEEEEeecCCCCCC-------CC---hHHHHHhhh-CC-CCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEeccC
Q 029629 1 MVLVLAIGDLHIPHRA-------SD---LPQKFKSML-VP-GKIQHIICTGNLSI-----KEVHDYLKSLCPDLHVTRGE 63 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~-------~~---~~~~l~~~~-~~-~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GN 63 (190)
|..+.++||||.+... .+ ..+.+..-+ +. ..-|.+.++||+.. .+..+.++++......|+||
T Consensus 3 m~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGrkhlv~GN 82 (186)
T COG4186 3 MTMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNGRKHLVPGN 82 (186)
T ss_pred eeEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCCcEEEeeCC
Confidence 6779999999986432 11 112222211 11 34599999999986 35667788888888999999
Q ss_pred CCCCC---------CCCcceEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcce
Q 029629 64 YDEDS---------RYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKA 122 (190)
Q Consensus 64 HD~~~---------~~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~ 122 (190)
||.-- .....+.++.+|.+++++|-+...+....+.....-....+++.++||.|.+..
T Consensus 83 hDk~~~~~~~~~~~svq~f~~ie~dg~~~~LsHyP~~~~~~~~~~~r~~y~~~~~~llIHGH~H~~~~ 150 (186)
T COG4186 83 HDKCHPMYRHAYFDSVQAFQRIEWDGEDVYLSHYPRPGQDHPGMESRFDYLRLRVPLLIHGHLHSQFP 150 (186)
T ss_pred CCCCcccccchhhHHHHHHHheeECCeEEEEEeCCCCCCCCcchhhhHHHHhccCCeEEecccccccc
Confidence 99753 123456788999999999965433221112222222245789999999998443
No 54
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.48 E-value=1.3e-13 Score=105.37 Aligned_cols=127 Identities=23% Similarity=0.263 Sum_probs=79.5
Q ss_pred EEEeecCCCCCCCChHHHHHhhhC--------CCCccEEEEcCCCCC-----HHHHHHHhhhC-------CcEEEeccCC
Q 029629 5 LAIGDLHIPHRASDLPQKFKSMLV--------PGKIQHIICTGNLSI-----KEVHDYLKSLC-------PDLHVTRGEY 64 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~--------~~~~D~vi~~GDl~~-----~~~~~~l~~l~-------~~~~~v~GNH 64 (190)
+++||+|++. +.+ +++.+.++ ..+.|.++++||++| .++++.+.++. .++++++|||
T Consensus 1 ~vi~DIHG~~--~~l-~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNH 77 (208)
T cd07425 1 VAIGDLHGDL--DAF-REILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNH 77 (208)
T ss_pred CEEeCccCCH--HHH-HHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCC
Confidence 4799999863 233 33333222 246899999999998 36777776653 4799999999
Q ss_pred CCCCC-----C--C-----------------------------cceEEEeCCEEEEEeeCCccCCCC-----CH------
Q 029629 65 DEDSR-----Y--P-----------------------------ETKTLTIGQFKLGICHGHQVIPWG-----DL------ 97 (190)
Q Consensus 65 D~~~~-----~--p-----------------------------~~~~~~~~~~~i~~~Hg~~~~~~~-----~~------ 97 (190)
|...- . + .+.....+ +++++||++...|. ..
T Consensus 78 E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~--~~~fvHag~~~~w~r~y~~~~~~~~~~ 155 (208)
T cd07425 78 ELMNLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN--DTLFVHGGLGPLWYRGYSKETSDKECA 155 (208)
T ss_pred cHHHHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC--CEEEEeCCcHHHHhhHhhhhhhhccch
Confidence 97630 0 0 01122333 47789998632220 00
Q ss_pred -HHHHHHhhccCccEEEeCCCCCcceE--EEcC-eEEEccCCc
Q 029629 98 -DSLAMLQRQLDVDILVTGHTHQFKAY--KHEG-GVVINPGSA 136 (190)
Q Consensus 98 -~~~~~~~~~~~~~~vi~GHtH~~~~~--~~~~-~~~inpGs~ 136 (190)
..+...++..+.+++++||||.+... ..+| ...|..|..
T Consensus 156 ~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g~~ 198 (208)
T cd07425 156 AAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVGMS 198 (208)
T ss_pred HHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCCcc
Confidence 13456677788999999999997654 3444 344555554
No 55
>PLN02533 probable purple acid phosphatase
Probab=99.48 E-value=1.4e-11 Score=103.59 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=112.4
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH----H----HHHHHhhh--CCcEEEeccCCCCCC---
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK----E----VHDYLKSL--CPDLHVTRGEYDEDS--- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~----~----~~~~l~~l--~~~~~~v~GNHD~~~--- 68 (190)
.|+++++|++.... ....+.+ +++.++|+|+++||++.. . ..+.++.+ ..|++.++||||...
T Consensus 140 ~~f~v~GDlG~~~~---~~~tl~~-i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~ 215 (427)
T PLN02533 140 IKFAVSGDLGTSEW---TKSTLEH-VSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPI 215 (427)
T ss_pred eEEEEEEeCCCCcc---cHHHHHH-HHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCcccccccccc
Confidence 48999999985321 1223333 345789999999999962 1 22233333 268999999999741
Q ss_pred -------------CCC---------cceEEEeCC-----------------------------------EEEEEeeCCcc
Q 029629 69 -------------RYP---------ETKTLTIGQ-----------------------------------FKLGICHGHQV 91 (190)
Q Consensus 69 -------------~~p---------~~~~~~~~~-----------------------------------~~i~~~Hg~~~ 91 (190)
..| ....++.++ +.|++.|.+++
T Consensus 216 ~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y 295 (427)
T PLN02533 216 LHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWY 295 (427)
T ss_pred ccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCee
Confidence 111 112233332 23444554333
Q ss_pred CCC---C-------CHHHHHHHhhccCccEEEeCCCCCcceEE--------EcCeEEEccCCccCCCCC---C-------
Q 029629 92 IPW---G-------DLDSLAMLQRQLDVDILVTGHTHQFKAYK--------HEGGVVINPGSATGAYSS---F------- 143 (190)
Q Consensus 92 ~~~---~-------~~~~~~~~~~~~~~~~vi~GHtH~~~~~~--------~~~~~~inpGs~~~~~~~---~------- 143 (190)
... . ..+.+..++.++++|++++||.|...... ..++.+|..|+.|..... .
T Consensus 296 ~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~ 375 (427)
T PLN02533 296 NSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDI 375 (427)
T ss_pred ecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCc
Confidence 110 0 12345677888999999999999765421 246788888887653210 0
Q ss_pred --CCCCCCeEEEEEEe-CCEEEEEEEEeeCC-eEEEEEEEeecccccc
Q 029629 144 --TFDVNPSFVLMDID-GLRVVVYVYELIDG-EVKVDKIDFKKTATTR 187 (190)
Q Consensus 144 --~~~~~~~~~ll~i~-~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 187 (190)
-....-+|..+++- ...+..++++-+++ ....+++++.|....|
T Consensus 376 s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~~~~ 423 (427)
T PLN02533 376 SLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSLLTEP 423 (427)
T ss_pred eeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEeccCCC
Confidence 01234588889874 55788888886655 5677899999887654
No 56
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.46 E-value=8.8e-13 Score=103.94 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=43.3
Q ss_pred EEEEeecCCCCCCCChH----HHHHhhhCCCCccEEEEcCCCCCH----------------HHHHHHhhh----CCcEEE
Q 029629 4 VLAIGDLHIPHRASDLP----QKFKSMLVPGKIQHIICTGNLSIK----------------EVHDYLKSL----CPDLHV 59 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~----~~l~~~~~~~~~D~vi~~GDl~~~----------------~~~~~l~~l----~~~~~~ 59 (190)
|+++||+|++....+.. +.+.+.+++.+||+|+++||+++. ..++.+... ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 78999999864332221 224455667889999999999971 112223222 258999
Q ss_pred eccCCCCC
Q 029629 60 TRGEYDED 67 (190)
Q Consensus 60 v~GNHD~~ 67 (190)
|+||||.+
T Consensus 82 v~GNHD~~ 89 (256)
T cd07401 82 IRGNHDLF 89 (256)
T ss_pred eCCCCCcC
Confidence 99999985
No 57
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.45 E-value=2.2e-13 Score=101.13 Aligned_cols=124 Identities=17% Similarity=0.118 Sum_probs=78.0
Q ss_pred EEEeecCCCCCC----CC--------------hHHHHHhhhCCCCccEEEEcCCCCCH----------HHHHHHhhh---
Q 029629 5 LAIGDLHIPHRA----SD--------------LPQKFKSMLVPGKIQHIICTGNLSIK----------EVHDYLKSL--- 53 (190)
Q Consensus 5 ~~iSD~H~~~~~----~~--------------~~~~l~~~~~~~~~D~vi~~GDl~~~----------~~~~~l~~l--- 53 (190)
+++||+|+.... .. +.+.+.+++++.+||.|+++||+++. +..+.++++
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFL 80 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcc
Confidence 468999985422 11 23455555677899999999999982 133334332
Q ss_pred ------CCcEEEeccCCCCCCCC-Cc--ceEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEE
Q 029629 54 ------CPDLHVTRGEYDEDSRY-PE--TKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYK 124 (190)
Q Consensus 54 ------~~~~~~v~GNHD~~~~~-p~--~~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~ 124 (190)
..|+++|+||||....- .. .....+...-|+++|-+.. .+++..+++++++||+|......
T Consensus 81 ~~~~~~~~~~~~v~GNHD~g~~~~~~~~~~~~~f~~~fi~l~H~p~~----------~~~~~~~~~~~lsGH~H~~~~~~ 150 (171)
T cd07384 81 PSNGLEDIPVYYVPGNHDIGYGEVISFPEVVDRFERYFILLTHIPLY----------RLLDTIKPVLILSGHDHDQCEVV 150 (171)
T ss_pred cccccCCceEEEECCccccCCCCccccHHHHHHHHhhheeEECCccH----------HHHhccCceEEEeCcccCCeEEE
Confidence 45899999999986421 11 1111122233888994321 13456689999999999886654
Q ss_pred Ec----CeEEEccCCccC
Q 029629 125 HE----GGVVINPGSATG 138 (190)
Q Consensus 125 ~~----~~~~inpGs~~~ 138 (190)
.. .+.-|...|++.
T Consensus 151 ~~~~~~~~~ei~v~S~s~ 168 (171)
T cd07384 151 HSSKAGSVREITVKSFSW 168 (171)
T ss_pred ecCCCCCceEEeeccchh
Confidence 43 366667766653
No 58
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.42 E-value=3.6e-12 Score=99.84 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=88.4
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCC---------CCccEEEEcCCCCC-----HHHHHHHhhhC--CcEEEeccCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVP---------GKIQHIICTGNLSI-----KEVHDYLKSLC--PDLHVTRGEYD 65 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~---------~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~~~~v~GNHD 65 (190)
||++++||+|+.. ..+.+.+.+ +.- .+-|.++++||++| .++++++.++. .++++|+||||
T Consensus 1 ~~~~vIGDIHG~~--~~L~~lL~~-~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE 77 (245)
T PRK13625 1 MKYDIIGDIHGCY--QEFQALTEK-LGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHC 77 (245)
T ss_pred CceEEEEECccCH--HHHHHHHHH-cCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccH
Confidence 7999999999853 233333333 221 13589999999999 36777776653 47999999999
Q ss_pred CCC-----------------------CCC-----------------cceEEEeCCEEEEEeeCCccCCC-C-CHHHHHH-
Q 029629 66 EDS-----------------------RYP-----------------ETKTLTIGQFKLGICHGHQVIPW-G-DLDSLAM- 102 (190)
Q Consensus 66 ~~~-----------------------~~p-----------------~~~~~~~~~~~i~~~Hg~~~~~~-~-~~~~~~~- 102 (190)
... .++ .+.....++.+++++|+...... . .......
T Consensus 78 ~~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~~~~~~~~~~~~ 157 (245)
T PRK13625 78 NKLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDYIGRQDKKVQTF 157 (245)
T ss_pred HHHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHhcccchhhhhhH
Confidence 531 000 01112334456889998753211 0 1001100
Q ss_pred --------------------Hhh-ccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCCE
Q 029629 103 --------------------LQR-QLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLR 160 (190)
Q Consensus 103 --------------------~~~-~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~~ 160 (190)
+.+ ..+...+++|||-.......++...|.+|+... +....+++.++.
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~vV~GHtp~~~~~~~~~~i~IDtGa~~g----------G~Ltal~l~~~~ 226 (245)
T PRK13625 158 VLYGDITGEKHPDGSPVRRDWAKEYKGTAWIVYGHTPVKEPRFVNHTVNIDTGCVFG----------GRLTALRYPEME 226 (245)
T ss_pred HhhccccCCcCCCCCeeeeccchhcCCCcEEEECCCCCccceecCCeEEEECcCccC----------CEEEEEECCCCc
Confidence 111 124568999999877666667788899998642 355667776543
No 59
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.41 E-value=2.6e-12 Score=101.95 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=48.9
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEeccCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLCPDLHVTRGEYDED 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
|+++++||+|++. ..+.+.+.++--..++|.++++||+++ .++++.+.++..++++|+||||..
T Consensus 1 M~~~vIGDIHG~~--~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD~~ 69 (275)
T PRK00166 1 MATYAIGDIQGCY--DELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHDLH 69 (275)
T ss_pred CcEEEEEccCCCH--HHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChhHH
Confidence 6999999999864 233333333211346899999999999 478888888876799999999974
No 60
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.34 E-value=8.9e-11 Score=93.52 Aligned_cols=72 Identities=17% Similarity=0.027 Sum_probs=49.6
Q ss_pred HhhccCccEEEeCCCCCcce-EEEcC-eEEEccCCccCCCCCCCCCCCCeEEEEEEeCCEE-EEEEEEeeCCeEEE
Q 029629 103 LQRQLDVDILVTGHTHQFKA-YKHEG-GVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRV-VVYVYELIDGEVKV 175 (190)
Q Consensus 103 ~~~~~~~~~vi~GHtH~~~~-~~~~~-~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~~~-~~~~~~l~~~~~~~ 175 (190)
+....+++.++|||-|.... ....+ .++...|..|..-+. .++..+...+++++...- .-+|+++++...++
T Consensus 294 L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg-~~gw~Rr~Rv~e~d~~~~~IkTWKRl~d~~~~~ 368 (379)
T KOG1432|consen 294 LVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYG-IGGWERRARVFELDLNKDRIKTWKRLDDKPLSV 368 (379)
T ss_pred HHhccCcceEEeccccccceecccCCeEEEEecCCCccCCcC-cCCcccceEEEEccccccccceeeecCCCCcce
Confidence 33367899999999998654 34445 677777877754222 355677888999986543 45788887766554
No 61
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.34 E-value=1.6e-11 Score=97.74 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=47.7
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-------HHHHHHHhhhCC--cEEEeccCCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-------KEVHDYLKSLCP--DLHVTRGEYDEDS 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~~l~~--~~~~v~GNHD~~~ 68 (190)
.||+++||+|.........+.+.++. .+.+|.|+++||+++ ..+.+.|+++.. ++++|.||||+..
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~-~~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~ 119 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIA-NELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAPLGVFAVLGNHDYGV 119 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHH-hcCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhccCCEEEEeccccccc
Confidence 47999999998643323334444433 466799999999998 245666666653 5999999999975
No 62
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=99.33 E-value=6.4e-11 Score=98.35 Aligned_cols=166 Identities=23% Similarity=0.292 Sum_probs=102.0
Q ss_pred eEEEEEeecCCCCCC--CChHHHHHhhhC-----CCCccEEEEcCCCCC-----------------HHHHHHHhh----h
Q 029629 2 VLVLAIGDLHIPHRA--SDLPQKFKSMLV-----PGKIQHIICTGNLSI-----------------KEVHDYLKS----L 53 (190)
Q Consensus 2 mri~~iSD~H~~~~~--~~~~~~l~~~~~-----~~~~D~vi~~GDl~~-----------------~~~~~~l~~----l 53 (190)
.+++++||+|.+... ......+.++++ ...+..++++||++| .+.++.+++ .
T Consensus 226 v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~v 305 (481)
T COG1311 226 VYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQV 305 (481)
T ss_pred eEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhC
Confidence 468999999984321 011223344442 234689999999998 123444443 3
Q ss_pred C--CcEEEeccCCCCCC-CCC---------------------cceEEEeCCEEEEEeeCCcc------CCCCC---H-HH
Q 029629 54 C--PDLHVTRGEYDEDS-RYP---------------------ETKTLTIGQFKLGICHGHQV------IPWGD---L-DS 99 (190)
Q Consensus 54 ~--~~~~~v~GNHD~~~-~~p---------------------~~~~~~~~~~~i~~~Hg~~~------~~~~~---~-~~ 99 (190)
. ..+++.|||||... ++| ....+.++|..+++.||-.. .|..+ + ..
T Consensus 306 p~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~sidDii~~vP~~~~~~~~~a 385 (481)
T COG1311 306 PEHIKVFIMPGNHDAVRQALPQPHFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGRSIDDIIKLVPGADYDSPLKA 385 (481)
T ss_pred CCCceEEEecCCCCccccccCCCCcchhhcccccccceEecCCCcEEEECCEEEEEecCCCHHHHHhhCCCCCccchHHH
Confidence 2 46899999999863 122 34567889999999998542 11111 1 11
Q ss_pred HHHHh------------------------hccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEE
Q 029629 100 LAMLQ------------------------RQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMD 155 (190)
Q Consensus 100 ~~~~~------------------------~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~ 155 (190)
+..++ -..-+|++.+||+|........|+..+|.|++-... ... -++.
T Consensus 386 me~lLk~rHlaPtygg~~p~aP~~kD~lVIeevPDv~~~Ghvh~~g~~~y~gv~~vns~T~q~qT------efq--k~vn 457 (481)
T COG1311 386 MEELLKRRHLAPTYGGTLPIAPETKDYLVIEEVPDVFHTGHVHKFGTGVYEGVNLVNSGTWQEQT------EFQ--KMVN 457 (481)
T ss_pred HHHHHHhcccCCCCCCccccccCCcCceeeccCCcEEEEccccccceeEEeccceEEeeeecchh------ccc--eEEE
Confidence 11111 123589999999999999888889999999986431 112 2444
Q ss_pred EeCCEEEEEEEEeeCCeEEE
Q 029629 156 IDGLRVVVYVYELIDGEVKV 175 (190)
Q Consensus 156 i~~~~~~~~~~~l~~~~~~~ 175 (190)
++.....+.+++++....++
T Consensus 458 i~p~~~~v~vv~~~~~~v~~ 477 (481)
T COG1311 458 INPTPGNVPVVDFDSRSVKV 477 (481)
T ss_pred ecCcccceeEEeccccccee
Confidence 44444455666665544443
No 63
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.32 E-value=1.3e-10 Score=95.66 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=62.0
Q ss_pred HHHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCC--------CCCCCCeEEEEEEeCCEEEEEEEE-ee
Q 029629 99 SLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSF--------TFDVNPSFVLMDIDGLRVVVYVYE-LI 169 (190)
Q Consensus 99 ~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~--------~~~~~~~~~ll~i~~~~~~~~~~~-l~ 169 (190)
.+..+++++++|++++||-|..+....+++.++.+|+.+..+... -.....+|+.+++..++++++++. ..
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~lq~i~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~~~GF~~~~l~~~~l~~~fid~~~ 318 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRNMEVLTDEGTAHINCGSGGNSGRKSIMKNSKSLFYSEDIGFCIHELNAEGMVTKFVSGNT 318 (394)
T ss_pred HHHHHHHHcCcCEEEEccccceEEecCCCceEEEeCccccccCCCCCCCCCcceecCCCCEEEEEEecCEEEEEEEeCCC
Confidence 567788899999999999999888777899999999976543210 012457899999999999999997 55
Q ss_pred CCeEEEEEEEe
Q 029629 170 DGEVKVDKIDF 180 (190)
Q Consensus 170 ~~~~~~~~~~~ 180 (190)
++.+..-.+..
T Consensus 319 GkvL~~~~~~~ 329 (394)
T PTZ00422 319 GEVLYTHKQPL 329 (394)
T ss_pred CcEEEEeeecc
Confidence 55555544433
No 64
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.24 E-value=1.7e-11 Score=92.05 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=65.0
Q ss_pred HHhhhCCCCccEEEEcCCCCCH-------HHHHH---Hhhh-----CCcEEEeccCCCCCCC--CCcce-EEEeCCEEEE
Q 029629 23 FKSMLVPGKIQHIICTGNLSIK-------EVHDY---LKSL-----CPDLHVTRGEYDEDSR--YPETK-TLTIGQFKLG 84 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~~-------~~~~~---l~~l-----~~~~~~v~GNHD~~~~--~p~~~-~~~~~~~~i~ 84 (190)
+...++..+||.|+++|||+|. +..+. +++. ..|+++|+||||.... .+... +......=++
T Consensus 34 ~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~Fi~ 113 (195)
T cd08166 34 YHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYFIM 113 (195)
T ss_pred HHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhhee
Confidence 3344456789999999999982 23333 3332 1479999999998742 11110 0001111188
Q ss_pred EeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEEcCe
Q 029629 85 ICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGG 128 (190)
Q Consensus 85 ~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~~ 128 (190)
+.|=+... ..++ .+..+..+..++++++||.|..........
T Consensus 114 lsH~P~~~-~~~~-~~~~~~~~~~p~~Ifs~H~H~s~~~~~~~~ 155 (195)
T cd08166 114 LSHVPLLA-EGGQ-ALKHVVTDLDPDLIFSAHRHKSSIFMYDRL 155 (195)
T ss_pred eecccccc-cccH-HHHHHHHhcCceEEEEcCccceeeEEeecc
Confidence 88854432 2222 456667788999999999999888765433
No 65
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.23 E-value=8.6e-11 Score=90.58 Aligned_cols=130 Identities=21% Similarity=0.221 Sum_probs=82.0
Q ss_pred EEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhC---CcEEEeccCCCCCC-----CCC
Q 029629 5 LAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLC---PDLHVTRGEYDEDS-----RYP 71 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~---~~~~~v~GNHD~~~-----~~p 71 (190)
+++||+|++. ..+ .++.+.+...+.|.++++||+++ .++++.+.++. .++++++||||... ...
T Consensus 1 ~~igDiHg~~--~~l-~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~~~~~~~~~~~ 77 (225)
T cd00144 1 YVIGDIHGCL--DDL-LRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHEDMLLNFLYGFY 77 (225)
T ss_pred CEEeCCCCCH--HHH-HHHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchhhhhhhhcCCc
Confidence 3799999853 233 33333344457899999999998 46777777764 37999999999763 000
Q ss_pred ------------------------------cceEEEeCCEEEEEeeCCccCCCCCH------------------------
Q 029629 72 ------------------------------ETKTLTIGQFKLGICHGHQVIPWGDL------------------------ 97 (190)
Q Consensus 72 ------------------------------~~~~~~~~~~~i~~~Hg~~~~~~~~~------------------------ 97 (190)
.+....++..+++++||.........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~~~~~~~~~~~~lw~r~~~~~ 157 (225)
T cd00144 78 DEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIKEEPEDQLPEDLLWSDPLELP 157 (225)
T ss_pred chhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhhcCcccccceeeeecCCCCCC
Confidence 01223344458999998763221100
Q ss_pred ------------HHHHHHhhccCccEEEeCCCCCcceE---EEcCeEEEccCCcc
Q 029629 98 ------------DSLAMLQRQLDVDILVTGHTHQFKAY---KHEGGVVINPGSAT 137 (190)
Q Consensus 98 ------------~~~~~~~~~~~~~~vi~GHtH~~~~~---~~~~~~~inpGs~~ 137 (190)
..........+...+|+||+...... ..++...|-.|+.-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~ 212 (225)
T cd00144 158 GGFGSSRRGGGPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNY 212 (225)
T ss_pred CCCcCCCCCCCHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcc
Confidence 01122334557889999999886654 34556777777653
No 66
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.23 E-value=8.8e-11 Score=85.70 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=83.4
Q ss_pred eEEEEEeecCCCCCCC-----------ChHHHHHhhhC--CCCccEEEEcCCCCC-------HHHHHHHhhhCCcEEEec
Q 029629 2 VLVLAIGDLHIPHRAS-----------DLPQKFKSMLV--PGKIQHIICTGNLSI-------KEVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 2 mri~~iSD~H~~~~~~-----------~~~~~l~~~~~--~~~~D~vi~~GDl~~-------~~~~~~l~~l~~~~~~v~ 61 (190)
|||..+||+|+..+.. ...+++.+..+ -..-|.|++.|||.= .+.++++..+...-|.++
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~LPG~K~m~r 80 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDLPGTKYMIR 80 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhcCChhhEEEecccchhheechhhhhhhhhhhcCCCcEEEEe
Confidence 8999999999854322 12344444331 134599999999973 345667777766789999
Q ss_pred cCCCCCCC--------CCc---------------------------------------------------ceEE-EeCCE
Q 029629 62 GEYDEDSR--------YPE---------------------------------------------------TKTL-TIGQF 81 (190)
Q Consensus 62 GNHD~~~~--------~p~---------------------------------------------------~~~~-~~~~~ 81 (190)
||||+|.. +|. ...+ +-...
T Consensus 81 GNHDYWw~s~skl~n~lp~~l~~~n~~f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~ 160 (230)
T COG1768 81 GNHDYWWSSISKLNNALPPILFYLNNGFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVSK 160 (230)
T ss_pred cCCccccchHHHHHhhcCchHhhhccceeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcCe
Confidence 99999851 110 0000 01124
Q ss_pred EEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcc
Q 029629 82 KLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK 121 (190)
Q Consensus 82 ~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~ 121 (190)
-|+++|-.+..+.+++..+.+++++..++.+++||.|...
T Consensus 161 fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv~ 200 (230)
T COG1768 161 FIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGVP 200 (230)
T ss_pred EEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCCC
Confidence 4788998888777777888888989999999999999754
No 67
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.19 E-value=9.1e-10 Score=86.41 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=82.3
Q ss_pred eEEEEEeecCCCCC----CCCh--HHHHHhhhCCCCcc-EEEEcCCCCCH----------HHHHHHhhhCCcEEEeccCC
Q 029629 2 VLVLAIGDLHIPHR----ASDL--PQKFKSMLVPGKIQ-HIICTGNLSIK----------EVHDYLKSLCPDLHVTRGEY 64 (190)
Q Consensus 2 mri~~iSD~H~~~~----~~~~--~~~l~~~~~~~~~D-~vi~~GDl~~~----------~~~~~l~~l~~~~~~v~GNH 64 (190)
++|+++||+|+... ...+ +..+.+.++++.+| .++.+||+++. ..++.|+.++ ..+++.|||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-~d~~~~GNH 79 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG-YDAVTIGNH 79 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC-CCEEeeccc
Confidence 48999999996431 0111 12222233445677 77899999972 4566676665 356778999
Q ss_pred CCCCC------------CC-------------------cceEEEeCCEEEEEeeCCcc-C-----C-------CCCHH--
Q 029629 65 DEDSR------------YP-------------------ETKTLTIGQFKLGICHGHQV-I-----P-------WGDLD-- 98 (190)
Q Consensus 65 D~~~~------------~p-------------------~~~~~~~~~~~i~~~Hg~~~-~-----~-------~~~~~-- 98 (190)
|.... +| ...+++.+|.+|.++--... . + ..+..
T Consensus 80 e~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (252)
T cd00845 80 EFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFEDLAEA 159 (252)
T ss_pred cccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCceecCHHHH
Confidence 97631 11 13456778888766542110 0 0 00100
Q ss_pred ------------------------HHHHHhhc-cCccEEEeCCCCCcceE--EEcCeEEEccCCccC
Q 029629 99 ------------------------SLAMLQRQ-LDVDILVTGHTHQFKAY--KHEGGVVINPGSATG 138 (190)
Q Consensus 99 ------------------------~~~~~~~~-~~~~~vi~GHtH~~~~~--~~~~~~~inpGs~~~ 138 (190)
.-.++++. .++|++++||+|..... ..+++.++.+|+-+.
T Consensus 160 ~~~~~~~~~~~~D~vIvl~H~g~~~~~~la~~~~giDlvlggH~H~~~~~~~~~~~~~v~~~g~~~~ 226 (252)
T cd00845 160 VAVAEELLAEGADVIILLSHLGLDDDEELAEEVPGIDVILGGHTHHLLEEPEVVNGTLIVQAGKYGK 226 (252)
T ss_pred HHHHHHHHhCCCCEEEEEeccCccchHHHHhcCCCccEEEcCCcCcccCCCcccCCEEEEeCChhHc
Confidence 01223332 58999999999986653 568899999998774
No 68
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.19 E-value=1.4e-10 Score=91.55 Aligned_cols=64 Identities=27% Similarity=0.303 Sum_probs=49.0
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEeccCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLCPDLHVTRGEYDED 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
|++.+|||+|++. .++.+.+.++--..+.|.++++||+++ .++++++.++...+++|.||||..
T Consensus 1 m~~YvIGDIHGc~--daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD~~ 69 (279)
T TIGR00668 1 MATYLIGDLHGCY--DELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHDLH 69 (279)
T ss_pred CcEEEEEcccCCH--HHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhHHH
Confidence 6799999999864 344444444321346799999999999 378999998876688999999964
No 69
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=99.17 E-value=2.9e-10 Score=87.25 Aligned_cols=106 Identities=22% Similarity=0.319 Sum_probs=66.5
Q ss_pred EEEEEeecCCCCCCC--------------ChHHHHHhhhCCCCccEEEEcCCCCCH----------HHHHHHhhhCC-cE
Q 029629 3 LVLAIGDLHIPHRAS--------------DLPQKFKSMLVPGKIQHIICTGNLSIK----------EVHDYLKSLCP-DL 57 (190)
Q Consensus 3 ri~~iSD~H~~~~~~--------------~~~~~l~~~~~~~~~D~vi~~GDl~~~----------~~~~~l~~l~~-~~ 57 (190)
+.+++||+|+..... .+.+.+.+++++.+|+.+|++||+... ++...++.+.. .+
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~ev 100 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDEREV 100 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccCcE
Confidence 689999999965321 122345556678999999999999871 22222222222 48
Q ss_pred EEeccCCCCCCC--CCcc---eEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcc
Q 029629 58 HVTRGEYDEDSR--YPET---KTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFK 121 (190)
Q Consensus 58 ~~v~GNHD~~~~--~p~~---~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~ 121 (190)
.+++||||.... +|.. ..-+..-..++++|||..... .+.. ++.||.|-..
T Consensus 101 i~i~GNHD~~i~~~~~~~~v~v~~~~~i~~~~~~HGh~~~~~------------~~~~-~I~GHeHPav 156 (235)
T COG1407 101 IIIRGNHDNGIEEILPGFNVEVVDELEIGGLLFRHGHKEPEP------------EGLE-VIIGHEHPAV 156 (235)
T ss_pred EEEeccCCCccccccccCCceeeeeEEecCEEEEeCCCCCcc------------ccce-EEcccCCccE
Confidence 999999998753 2322 111222345899999875321 1122 8999999543
No 70
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=99.12 E-value=1.2e-08 Score=80.16 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=95.7
Q ss_pred EEEEEeecCCCCCCCC--hHHHHHhhhC-----------CCCccEEEEcCCCCCH-----------------------HH
Q 029629 3 LVLAIGDLHIPHRASD--LPQKFKSMLV-----------PGKIQHIICTGNLSIK-----------------------EV 46 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~--~~~~l~~~~~-----------~~~~D~vi~~GDl~~~-----------------------~~ 46 (190)
+|+++||+|.+..... -++.|.+++. ..++..+|++||.++. +.
T Consensus 1 ~i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T cd07387 1 YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEA 80 (257)
T ss_pred CEEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHH
Confidence 4799999998654221 1345556552 1245689999999971 01
Q ss_pred H----HHHhhhC--CcEEEeccCCCCCC-CCC----------------------cceEEEeCCEEEEEeeCCcc------
Q 029629 47 H----DYLKSLC--PDLHVTRGEYDEDS-RYP----------------------ETKTLTIGQFKLGICHGHQV------ 91 (190)
Q Consensus 47 ~----~~l~~l~--~~~~~v~GNHD~~~-~~p----------------------~~~~~~~~~~~i~~~Hg~~~------ 91 (190)
+ .+|.++. .|+...|||||... .+| ....++++|.+|+.+||-..
T Consensus 81 ~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ky 160 (257)
T cd07387 81 VKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKY 160 (257)
T ss_pred HHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHHh
Confidence 1 2233332 58999999999863 111 24568899999999999653
Q ss_pred CCCCCH-HHHHHHh-------------------------hccCccEEEeCCCCCcceEEEc-----CeEEEccCCccCCC
Q 029629 92 IPWGDL-DSLAMLQ-------------------------RQLDVDILVTGHTHQFKAYKHE-----GGVVINPGSATGAY 140 (190)
Q Consensus 92 ~~~~~~-~~~~~~~-------------------------~~~~~~~vi~GHtH~~~~~~~~-----~~~~inpGs~~~~~ 140 (190)
.+..++ +.++..+ -+.-++++++||.|........ .+++|+.++.+.
T Consensus 161 ~~~~~~l~~me~~L~wrHlaPTaPDTL~~yP~~~~Dpfvi~~~PhVyf~Gnq~~f~t~~~~~~~~~~v~lv~vP~Fs~-- 238 (257)
T cd07387 161 SSLESRLDILERTLKWRHIAPTAPDTLWCYPFTDRDPFILEECPHVYFAGNQPKFGTKLVEGEEGQRVLLVCVPSFSK-- 238 (257)
T ss_pred CCCCCHHHHHHHHHHhcccCCCCCCccccccCCCCCceeecCCCCEEEeCCCcceeeeEEEcCCCCeEEEEEeCCcCc--
Confidence 111111 1111111 1234889999999997765542 378899988864
Q ss_pred CCCCCCCCCeEEEEEEeCCEE
Q 029629 141 SSFTFDVNPSFVLMDIDGLRV 161 (190)
Q Consensus 141 ~~~~~~~~~~~~ll~i~~~~~ 161 (190)
.++.++++++....
T Consensus 239 -------t~~~vlvdl~tLe~ 252 (257)
T cd07387 239 -------TGTAVLVNLRTLEC 252 (257)
T ss_pred -------CCEEEEEECCcCcE
Confidence 57888998876543
No 71
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.11 E-value=4.5e-09 Score=83.73 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=29.6
Q ss_pred HHhhc-cCccEEEeCCCCCcceE-EEcCeEEEccCCccC
Q 029629 102 MLQRQ-LDVDILVTGHTHQFKAY-KHEGGVVINPGSATG 138 (190)
Q Consensus 102 ~~~~~-~~~~~vi~GHtH~~~~~-~~~~~~~inpGs~~~ 138 (190)
++++. .++|++++||+|..... ..+++.++.+|+-+.
T Consensus 211 ~la~~~~~vD~IlgGHsH~~~~~~~~~~~~v~q~g~~g~ 249 (277)
T cd07410 211 ELAEEVPGIDAILTGHQHRRFPGPTVNGVPVVQPGNWGS 249 (277)
T ss_pred HHHhcCCCCcEEEeCCCccccccCCcCCEEEEcCChhhC
Confidence 34443 68999999999997765 568899999999873
No 72
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.10 E-value=4.9e-09 Score=82.73 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=84.1
Q ss_pred eEEEEEeecCCCCCCC----ChHHHHHhh---hCCCCcc-EEEEcCCCCCH----------HHHHHHhhhCCcEEEeccC
Q 029629 2 VLVLAIGDLHIPHRAS----DLPQKFKSM---LVPGKIQ-HIICTGNLSIK----------EVHDYLKSLCPDLHVTRGE 63 (190)
Q Consensus 2 mri~~iSD~H~~~~~~----~~~~~l~~~---~~~~~~D-~vi~~GDl~~~----------~~~~~l~~l~~~~~~v~GN 63 (190)
.+|++++|+|.-.... .=..++..+ .++++++ +++.+||+++. ..++.|+.++ .-++++||
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-~d~~~~GN 79 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-VDLACFGN 79 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcC-CcEEeecc
Confidence 3799999999411110 002233333 2345667 99999999972 4556666665 35778999
Q ss_pred CCCCCC-------------------------------CCcceEEEeCCEEEEEeeCCcc--C-----C-----CCCHH-H
Q 029629 64 YDEDSR-------------------------------YPETKTLTIGQFKLGICHGHQV--I-----P-----WGDLD-S 99 (190)
Q Consensus 64 HD~~~~-------------------------------~p~~~~~~~~~~~i~~~Hg~~~--~-----~-----~~~~~-~ 99 (190)
||...+ ++...+++.+|.+|.++-=... . + ..++. .
T Consensus 80 Hefd~g~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~ 159 (257)
T cd07406 80 HEFDFGEDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDYVET 159 (257)
T ss_pred cccccCHHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcceEcCHHHH
Confidence 998630 1344667778888766541110 0 0 00110 0
Q ss_pred --------------------------HHHHhhc-cCccEEEeCCCCCcceEEEcCeEEEccCCccC
Q 029629 100 --------------------------LAMLQRQ-LDVDILVTGHTHQFKAYKHEGGVVINPGSATG 138 (190)
Q Consensus 100 --------------------------~~~~~~~-~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~ 138 (190)
-.++++. .++|+++.||+|.......+++.++.+|+-+.
T Consensus 160 ~~~~v~~~~~~~~D~iVvl~H~g~~~d~~la~~~~~iD~IlgGH~H~~~~~~~~~t~vv~~g~~g~ 225 (257)
T cd07406 160 ARELVDELREQGADLIIALTHMRLPNDKRLAREVPEIDLILGGHDHEYILVQVGGTPIVKSGSDFR 225 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCchhhHHHHHhCCCCceEEecccceeEeeeECCEEEEeCCcCcc
Confidence 1122322 47999999999998877788999999999874
No 73
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.09 E-value=4.1e-10 Score=88.52 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=46.7
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEeccCCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLCPDLHVTRGEYDED 67 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
++++||+|++. ..+.+.+.++-...+.|.++++||+++ .++++++.++..++++|+||||..
T Consensus 1 ~yvIGDIHG~~--~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD~~ 67 (257)
T cd07422 1 TYAIGDIQGCY--DELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHDLH 67 (257)
T ss_pred CEEEECCCCCH--HHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCchHH
Confidence 36899999864 234334433322346899999999999 478899998876799999999975
No 74
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.1e-09 Score=83.33 Aligned_cols=173 Identities=16% Similarity=0.219 Sum_probs=108.5
Q ss_pred eEEEEEeecCCCCC--CCChHHHHHhhhCCCCccEEEEcCCCCC---------HHHHHHHhh------hCCcEEEeccCC
Q 029629 2 VLVLAIGDLHIPHR--ASDLPQKFKSMLVPGKIQHIICTGNLSI---------KEVHDYLKS------LCPDLHVTRGEY 64 (190)
Q Consensus 2 mri~~iSD~H~~~~--~~~~~~~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~------l~~~~~~v~GNH 64 (190)
.++++++|.=-... +........++-++.++|+|+.+||=+- +..-+.++. +.+|.|.|.|||
T Consensus 44 lsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vlGNH 123 (336)
T KOG2679|consen 44 LSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVLGNH 123 (336)
T ss_pred eEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccchhhhccCc
Confidence 57999999863211 1111223334445688999999999773 333344443 447999999999
Q ss_pred CCCCCC-----------------Cc-----------------------------------------------------ce
Q 029629 65 DEDSRY-----------------PE-----------------------------------------------------TK 74 (190)
Q Consensus 65 D~~~~~-----------------p~-----------------------------------------------------~~ 74 (190)
|..... |. ..
T Consensus 124 DyrGnV~AQls~~l~~~d~RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L 203 (336)
T KOG2679|consen 124 DYRGNVEAQLSPVLRKIDKRWICPRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVAL 203 (336)
T ss_pred cccCchhhhhhHHHHhhccceecccHHhhcceeeeeeccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHH
Confidence 987411 00 00
Q ss_pred EEEeCCEEEEEeeCCccCC--CCC----HHHHHHHhhccCccEEEeCCCCCcceEE--EcCeEEEccCCccCCCCCCC-C
Q 029629 75 TLTIGQFKLGICHGHQVIP--WGD----LDSLAMLQRQLDVDILVTGHTHQFKAYK--HEGGVVINPGSATGAYSSFT-F 145 (190)
Q Consensus 75 ~~~~~~~~i~~~Hg~~~~~--~~~----~~~~~~~~~~~~~~~vi~GHtH~~~~~~--~~~~~~inpGs~~~~~~~~~-~ 145 (190)
......++|++-|...... .+. .+.+..+++..++|++++||-|-.+... ..++.++..|..+..+.+.+ .
T Consensus 204 ~~S~a~wkiVvGHh~i~S~~~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g~~~~ 283 (336)
T KOG2679|consen 204 KASRAKWKIVVGHHPIKSAGHHGPTKELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRGTDHN 283 (336)
T ss_pred HHhhcceEEEecccceehhhccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCCCccC
Confidence 0112345666666433211 111 2345677889999999999999866544 46788999988876653311 1
Q ss_pred -----------CCCCeEEEEEEeCCEEEEEEEEeeCCeEE
Q 029629 146 -----------DVNPSFVLMDIDGLRVVVYVYELIDGEVK 174 (190)
Q Consensus 146 -----------~~~~~~~ll~i~~~~~~~~~~~l~~~~~~ 174 (190)
-+..+|+-+++...+.++.++...+..+.
T Consensus 284 ~~~~p~~lkF~YdgqGfmsv~is~~e~~vvfyD~~G~~Lh 323 (336)
T KOG2679|consen 284 PEVNPKELKFYYDGQGFMSVEISHSEARVVFYDVSGKVLH 323 (336)
T ss_pred CccChhheEEeeCCCceEEEEEecceeEEEEEeccCceEE
Confidence 12347888888888888888888776644
No 75
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.02 E-value=2.8e-09 Score=84.02 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=29.6
Q ss_pred hCCCCccEEEEcCCCCCH----------HHHHHHhhhC------CcEEEeccCCCCC
Q 029629 27 LVPGKIQHIICTGNLSIK----------EVHDYLKSLC------PDLHVTRGEYDED 67 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl~~~----------~~~~~l~~l~------~~~~~v~GNHD~~ 67 (190)
.+..+||+|+++||+++. +.++.+.++. .|++.|+||||..
T Consensus 41 ~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig 97 (257)
T cd08163 41 QKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG 97 (257)
T ss_pred HHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC
Confidence 345689999999999982 1244444432 4789999999963
No 76
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=99.02 E-value=2e-09 Score=80.78 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=55.0
Q ss_pred hCCCCccEEEEcCCCCCH---------HHHHHHhhh----------------------CCcEEEeccCCCCCCCCCc--c
Q 029629 27 LVPGKIQHIICTGNLSIK---------EVHDYLKSL----------------------CPDLHVTRGEYDEDSRYPE--T 73 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl~~~---------~~~~~l~~l----------------------~~~~~~v~GNHD~~~~~p~--~ 73 (190)
....+||.|+++|||++. +-++++.++ ..+++.|+||||....-+. .
T Consensus 40 ~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~~~~~~~~ 119 (193)
T cd08164 40 QFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGYGGEVTEA 119 (193)
T ss_pred HHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCCCCccchH
Confidence 346789999999999981 222333321 1467999999998642211 1
Q ss_pred eEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCCCCCcceEEE
Q 029629 74 KTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKH 125 (190)
Q Consensus 74 ~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~ 125 (190)
........-|+++|..... .....++++++|||+|..++...
T Consensus 120 ~i~RF~~~FilL~H~P~~~----------~~~~~~~dl~lSGHtHgGqi~~~ 161 (193)
T cd08164 120 RIERFESLFILLTHVPLYK----------IFLEGKPGLILTGHDHEGCDYQH 161 (193)
T ss_pred HhhheheeEEEEEccccee----------ccccCCCCEEEeCccCCCeEEEe
Confidence 1111111118899954321 11235789999999998777653
No 77
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=99.01 E-value=1.1e-08 Score=80.64 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=41.6
Q ss_pred eEEEEEeecCCCCCC-----CChHHHHHhhh---CCCCccEEEEcCCCCC----------HHHHHHHhhhCCcEEEeccC
Q 029629 2 VLVLAIGDLHIPHRA-----SDLPQKFKSML---VPGKIQHIICTGNLSI----------KEVHDYLKSLCPDLHVTRGE 63 (190)
Q Consensus 2 mri~~iSD~H~~~~~-----~~~~~~l~~~~---~~~~~D~vi~~GDl~~----------~~~~~~l~~l~~~~~~v~GN 63 (190)
++|+++||+|+.... .. ..++..++ +.++.+.++.+||+++ ....+.|+.++.. +++.||
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g-~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~d-~~~~GN 78 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIG-YAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGYD-AVTPGN 78 (257)
T ss_pred CEEEEeccCcccccCCCCcccc-HHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCCc-EEcccc
Confidence 489999999974211 11 22223222 2236789999999997 2455666666543 467899
Q ss_pred CCCCC
Q 029629 64 YDEDS 68 (190)
Q Consensus 64 HD~~~ 68 (190)
||...
T Consensus 79 Hefd~ 83 (257)
T cd07408 79 HEFDY 83 (257)
T ss_pred ccccC
Confidence 99763
No 78
>PHA02239 putative protein phosphatase
Probab=98.99 E-value=7.7e-10 Score=86.04 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=44.0
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhC-CC-CccEEEEcCCCCC-----HHHHHHHhhh---CCcEEEeccCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLV-PG-KIQHIICTGNLSI-----KEVHDYLKSL---CPDLHVTRGEYDED 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~-~~-~~D~vi~~GDl~~-----~~~~~~l~~l---~~~~~~v~GNHD~~ 67 (190)
||++++||+|+.. ..+ +++.+.++ .. ..|.++++||++| .++++.+.++ ..++++|+||||..
T Consensus 1 m~~~~IsDIHG~~--~~l-~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEY--QKL-LTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCH--HHH-HHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 6999999999753 233 33333342 22 3699999999999 3566665443 24799999999974
No 79
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=98.92 E-value=8e-08 Score=76.33 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=44.5
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEeccCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
++++++||+|++. .++.+.+. .......+.++++||++| .+++..+..+. ..++.++||||..
T Consensus 28 ~~i~vvGDiHG~~--~~l~~ll~-~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQF--DDLLRLFD-LNGPPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCH--HHHHHHHH-HcCCCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 4789999999863 23333332 233456799999999999 36666665542 3689999999985
No 80
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=98.88 E-value=5.6e-08 Score=81.80 Aligned_cols=65 Identities=23% Similarity=0.223 Sum_probs=48.5
Q ss_pred HHHHHHhhcc-CccEEEeCCCCCcceEEE---------cCeEEEccCCccCCCCCCCCCCCCeEEEEEEe---CCEEEEE
Q 029629 98 DSLAMLQRQL-DVDILVTGHTHQFKAYKH---------EGGVVINPGSATGAYSSFTFDVNPSFVLMDID---GLRVVVY 164 (190)
Q Consensus 98 ~~~~~~~~~~-~~~~vi~GHtH~~~~~~~---------~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~---~~~~~~~ 164 (190)
+++.++++.+ ++.++|+||+|....... .+.+-||.+|+.. -+..|.++|+. ++.+++.
T Consensus 369 ~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvd--------fPq~~Ri~Ei~~n~dgt~si~ 440 (496)
T TIGR03767 369 TELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHID--------FPQQGRIIELADNQDGTVSIF 440 (496)
T ss_pred HHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEecccccc--------CCCCceEEEEEeCCCCcEEEE
Confidence 4666777776 799999999999776543 2678899999874 25788999993 5667777
Q ss_pred EEEeeC
Q 029629 165 VYELID 170 (190)
Q Consensus 165 ~~~l~~ 170 (190)
...++.
T Consensus 441 tt~vd~ 446 (496)
T TIGR03767 441 TTLIES 446 (496)
T ss_pred EEeccc
Confidence 776653
No 81
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.87 E-value=2.5e-07 Score=73.28 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=25.6
Q ss_pred cCccEEEeCCCCCcce---EEEcCeEEEccCCccC
Q 029629 107 LDVDILVTGHTHQFKA---YKHEGGVVINPGSATG 138 (190)
Q Consensus 107 ~~~~~vi~GHtH~~~~---~~~~~~~~inpGs~~~ 138 (190)
.++|+++.||+|.... ...+++.++.+|+-+.
T Consensus 206 ~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g~~~~ 240 (264)
T cd07411 206 PGIDVILSGHTHERTPKPIIAGGGTLVVEAGSHGK 240 (264)
T ss_pred CCCcEEEeCcccccccCcccccCCEEEEEcCcccc
Confidence 4799999999997544 3357899999999873
No 82
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=98.86 E-value=2.2e-08 Score=80.47 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=27.8
Q ss_pred CCccEEEEcCCCCCH-------H---------HHHHHhhh--CCcEEEeccCCCCC
Q 029629 30 GKIQHIICTGNLSIK-------E---------VHDYLKSL--CPDLHVTRGEYDED 67 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~-------~---------~~~~l~~l--~~~~~~v~GNHD~~ 67 (190)
.++|+||++||++.- + +.+.+++. ..|++.+.||||..
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~ 122 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSY 122 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCC
Confidence 389999999999971 1 12234443 26899999999985
No 83
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.86 E-value=2.1e-07 Score=74.63 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=27.2
Q ss_pred cCccEEEeCCCCCcceE---EEcCeEEEccCCccC
Q 029629 107 LDVDILVTGHTHQFKAY---KHEGGVVINPGSATG 138 (190)
Q Consensus 107 ~~~~~vi~GHtH~~~~~---~~~~~~~inpGs~~~ 138 (190)
.++|+++.||+|..... ..++++++.||+-+.
T Consensus 228 ~~iD~IlgGHsH~~~~~~~~~~~~~~v~q~g~~g~ 262 (288)
T cd07412 228 PDVDVVFAGHTHQAYNCTVPAGNPRLVTQAGSYGK 262 (288)
T ss_pred CCCCEEEeCccCccccccccCcCCEEEEecChhhc
Confidence 57999999999997665 568899999999874
No 84
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.83 E-value=1.1e-07 Score=89.12 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=41.8
Q ss_pred eEEEEEeecCCCCCC-CChHHHHHhhhCCCCccEEEE-cCCCCCH----------HHHHHHhhhCCcEEEeccCCCCC
Q 029629 2 VLVLAIGDLHIPHRA-SDLPQKFKSMLVPGKIQHIIC-TGNLSIK----------EVHDYLKSLCPDLHVTRGEYDED 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~-~~~~~~l~~~~~~~~~D~vi~-~GDl~~~----------~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
++|+++||+|+.... ..+...+.+ +++.+++.+++ +||+++. ..++.|+.++ .-+++.||||..
T Consensus 661 l~Il~~nD~Hg~l~g~~r~~~~i~~-~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-~d~~~~GNHEfd 736 (1163)
T PRK09419 661 LTILHTNDFHGHLDGAAKRVTKIKE-VKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-YDASTFGNHEFD 736 (1163)
T ss_pred EEEEEEeecccCCCCHHHHHHHHHH-HHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcC-CCEEEecccccc
Confidence 589999999975321 111222222 33467888877 9999982 4556666664 346799999964
No 85
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=4.9e-07 Score=75.32 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=109.5
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC---------HHHHHHHhhhC--CcEEEeccCCCCCCC-
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI---------KEVHDYLKSLC--PDLHVTRGEYDEDSR- 69 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~l~--~~~~~v~GNHD~~~~- 69 (190)
.++++++|+=........+... .+..++|+|++.|||.- ++..++++.+. .|..++.||||....
T Consensus 148 ~~~~i~GDlG~~~~~~s~~~~~---~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~ 224 (452)
T KOG1378|consen 148 TRAAIFGDMGCTEPYTSTLRNQ---EENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNHEIDWPP 224 (452)
T ss_pred eeEEEEccccccccccchHhHH---hcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEecccccccCCC
Confidence 3788999986543221222221 22346999999999984 12333444433 689999999997531
Q ss_pred ------------CC---------cceEEEeCCEE-------------------------------------EEEeeCCcc
Q 029629 70 ------------YP---------ETKTLTIGQFK-------------------------------------LGICHGHQV 91 (190)
Q Consensus 70 ------------~p---------~~~~~~~~~~~-------------------------------------i~~~Hg~~~ 91 (190)
.| ....+..++.. |++.|-.-+
T Consensus 225 ~~~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y 304 (452)
T KOG1378|consen 225 QPCFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMY 304 (452)
T ss_pred cccccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHHHHHHHHHHhcccCCCeEEEEecccce
Confidence 11 12233333333 444442221
Q ss_pred CCCC-----------CHHHHHHHhhccCccEEEeCCCCCcceEE------E------------cCeEEEccCCccCCC--
Q 029629 92 IPWG-----------DLDSLAMLQRQLDVDILVTGHTHQFKAYK------H------------EGGVVINPGSATGAY-- 140 (190)
Q Consensus 92 ~~~~-----------~~~~~~~~~~~~~~~~vi~GHtH~~~~~~------~------------~~~~~inpGs~~~~~-- 140 (190)
.... ....++.++-++++|+++.||.|...... . .+..+|.+|+.|+.-
T Consensus 305 ~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~ 384 (452)
T KOG1378|consen 305 CSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHL 384 (452)
T ss_pred ecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCccccc
Confidence 1111 11247788889999999999999864311 1 134677778777321
Q ss_pred ----CCC-----CCCCCCeEEEEEEeCC-EEEEEEEEeeC-CeEEEEEEEeeccccc
Q 029629 141 ----SSF-----TFDVNPSFVLMDIDGL-RVVVYVYELID-GEVKVDKIDFKKTATT 186 (190)
Q Consensus 141 ----~~~-----~~~~~~~~~ll~i~~~-~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 186 (190)
.+. -+...-+|.+|++.++ ....++++..+ ...-.+++++.|+..-
T Consensus 385 ~~~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~ 441 (452)
T KOG1378|consen 385 DPFSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYRD 441 (452)
T ss_pred CcccCCCCcccccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccCc
Confidence 000 1345568999999875 46777777744 4677889999887654
No 86
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.81 E-value=8.5e-07 Score=71.03 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=39.8
Q ss_pred eEEEEEeecCCCCCCCC----hHHHHHhhh---CC-----CCccEEEEcCCCCC----------HHHHHHHhhhCCcEEE
Q 029629 2 VLVLAIGDLHIPHRASD----LPQKFKSML---VP-----GKIQHIICTGNLSI----------KEVHDYLKSLCPDLHV 59 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~----~~~~l~~~~---~~-----~~~D~vi~~GDl~~----------~~~~~~l~~l~~~~~~ 59 (190)
++|++++|+|+...... =..++..++ ++ ...-+++.+||++. ....+.|+.++. -.+
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~-Da~ 79 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGY-DAM 79 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCC-cEE
Confidence 37999999998532210 011222222 11 23458899999986 234566777764 355
Q ss_pred eccCCCCCC
Q 029629 60 TRGEYDEDS 68 (190)
Q Consensus 60 v~GNHD~~~ 68 (190)
+.||||...
T Consensus 80 ~~GNHEfD~ 88 (285)
T cd07405 80 AVGNHEFDN 88 (285)
T ss_pred eeccccccc
Confidence 669999873
No 87
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.75 E-value=8.3e-08 Score=75.80 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=37.3
Q ss_pred EEEEeecCCCCCCCChHHHHHhhh--CCCCccEEEEcCCCCCH---H----------------HHHHHhh---hCCcEEE
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSML--VPGKIQHIICTGNLSIK---E----------------VHDYLKS---LCPDLHV 59 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~--~~~~~D~vi~~GDl~~~---~----------------~~~~l~~---l~~~~~~ 59 (190)
|++.+|+|+.. ..+.+.+...- +..++|++|++||+... . ..+++.. ...|+++
T Consensus 1 i~v~Gd~HG~~--~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~f 78 (262)
T cd00844 1 IAVEGCCHGEL--DKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIF 78 (262)
T ss_pred CEEEecCCccH--HHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEE
Confidence 68999999842 12222222221 12469999999999751 1 1122222 2346799
Q ss_pred eccCCCCC
Q 029629 60 TRGEYDED 67 (190)
Q Consensus 60 v~GNHD~~ 67 (190)
|.||||..
T Consensus 79 i~GNHE~~ 86 (262)
T cd00844 79 IGGNHEAS 86 (262)
T ss_pred ECCCCCCH
Confidence 99999964
No 88
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=98.71 E-value=6.2e-07 Score=71.96 Aligned_cols=62 Identities=18% Similarity=0.097 Sum_probs=43.0
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEeccCCCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
+++++||+|++. .++.+.+.. ......+.++++||++| .+++..+..+. ..++.++||||..
T Consensus 51 ~i~viGDIHG~~--~~L~~l~~~-~~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 51 PLKICGDIHGQY--YDLLRLFEY-GGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred ceEEEEecCCCH--HHHHHHHHh-cCCCCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchh
Confidence 578999999853 233333332 33345688999999999 36666665542 3589999999986
No 89
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=98.70 E-value=9e-07 Score=71.45 Aligned_cols=62 Identities=24% Similarity=0.209 Sum_probs=43.6
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEeccCCCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
++++++|+|++. .++.+.+ +.......+.++++||++| .+++..+..+. ..++.++||||..
T Consensus 44 ~i~ViGDIHG~~--~dL~~l~-~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQF--YDLLKLF-EVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCH--HHHHHHH-HhcCCCCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 689999999863 2333333 3333345699999999999 36666666543 3589999999975
No 90
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=98.69 E-value=8.4e-07 Score=71.88 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=41.2
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhC-CCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEeccCCCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLV-PGKIQHIICTGNLSI-----KEVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
++.+++|+|+.. .++.+.+ +... ...-|.++++||++| .+++..+..+. ..++.++||||..
T Consensus 61 ~~~VvGDIHG~~--~dL~~ll-~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 61 KITVCGDTHGQF--YDLLNIF-ELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred eeEEeecccCCH--HHHHHHH-HhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchH
Confidence 689999999853 2333332 2221 122368999999999 36666665542 3588999999974
No 91
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=98.69 E-value=3.5e-08 Score=76.21 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=43.1
Q ss_pred EEEeecCCCCCCCChHHHHHhhhCC--------CCccEEEEcCCCCC-----HHHHHHHhhhC--CcEEEeccCCCCC
Q 029629 5 LAIGDLHIPHRASDLPQKFKSMLVP--------GKIQHIICTGNLSI-----KEVHDYLKSLC--PDLHVTRGEYDED 67 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~--------~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~~~~v~GNHD~~ 67 (190)
.++||+|++. ..+.+.+.+ +.. ...|.++++||++| .++++++.++. .++++|+||||..
T Consensus 2 ~vIGDIHG~~--~~L~~lL~~-i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 2 DFIGDIHGHA--EKLVVLLHK-LGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred EEEEeccCCH--HHHHHHHHH-cCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcHH
Confidence 5899999863 233333333 321 14689999999999 47888888764 3599999999964
No 92
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=98.67 E-value=1.4e-06 Score=70.53 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=42.8
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEeccCCCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
++.+++|+|++. .++.+.+ +.......+.++++||++| .+++..+..+. ..++.++||||..
T Consensus 60 ~i~vvGDIHG~~--~dL~~l~-~~~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQY--FDLLRLF-EYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCH--HHHHHHH-HhcCCCCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchh
Confidence 578999999853 2333333 2233345678999999999 36666666543 3589999999985
No 93
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=98.62 E-value=1.9e-06 Score=68.93 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=42.2
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHhhhC----CcEEEeccCCCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
++.+++|+|++. .++.+.+. .......+.++++||++|+ +++..+..+. ..++.++||||..
T Consensus 43 ~i~vvGDIHG~~--~dL~~ll~-~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQF--YDLLELFR-VGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCH--HHHHHHHH-HcCCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchH
Confidence 478999999853 23333332 2333446789999999993 5666665442 3699999999975
No 94
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.62 E-value=2.1e-07 Score=67.50 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=68.8
Q ss_pred EEEeecCCCCCCCChHHHHHhhh-CCCCccEEEEcCCCCCH-----HHHHHHhh---hCCcEEEeccCCCCCCCCCcceE
Q 029629 5 LAIGDLHIPHRASDLPQKFKSML-VPGKIQHIICTGNLSIK-----EVHDYLKS---LCPDLHVTRGEYDEDSRYPETKT 75 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~-~~~~~D~vi~~GDl~~~-----~~~~~l~~---l~~~~~~v~GNHD~~~~~p~~~~ 75 (190)
++++|.|+.. ..+.+++.++. +..++|++|++||++.. +..+++.. ...|.|++-|||+
T Consensus 1 LV~G~~~G~l--~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~ggn~~---------- 68 (150)
T cd07380 1 LVCGDVNGRL--KALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGGNNP---------- 68 (150)
T ss_pred CeeecCCccH--HHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCCccCCCCEEEECCCCC----------
Confidence 4788999742 23444444433 34568999999999973 22233322 2358999999996
Q ss_pred EEeCCEEEEEeeCCccCCC-------------CCHHHHHHHhhccCccEEEeCCCCC
Q 029629 76 LTIGQFKLGICHGHQVIPW-------------GDLDSLAMLQRQLDVDILVTGHTHQ 119 (190)
Q Consensus 76 ~~~~~~~i~~~Hg~~~~~~-------------~~~~~~~~~~~~~~~~~vi~GHtH~ 119 (190)
+..|+++|..|.... .+...++++++..++.+.+|||.|.
T Consensus 69 ----~~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~ 121 (150)
T cd07380 69 ----GVDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGV 121 (150)
T ss_pred ----CCCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence 678999997774321 1344567888889999999999887
No 95
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=98.60 E-value=7.5e-08 Score=76.54 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=42.9
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhC-C-----CCccEEEEcCCCCC-----HHHHHHHhhhCC-----cEEEeccCCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLV-P-----GKIQHIICTGNLSI-----KEVHDYLKSLCP-----DLHVTRGEYDE 66 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~-~-----~~~D~vi~~GDl~~-----~~~~~~l~~l~~-----~~~~v~GNHD~ 66 (190)
+++++||+|++. ..++++.+.++ . ...+.+|++||++| .+++++|.++.. ++++++||||.
T Consensus 3 ~iyaIGDIHG~~---d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 3 VVICVGDIHGYI---SKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred eEEEEEeccCCH---HHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChH
Confidence 589999999853 22333333232 1 23678999999999 467887776532 47899999995
Q ss_pred C
Q 029629 67 D 67 (190)
Q Consensus 67 ~ 67 (190)
.
T Consensus 80 ~ 80 (304)
T cd07421 80 A 80 (304)
T ss_pred H
Confidence 4
No 96
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.59 E-value=3.3e-06 Score=73.61 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=40.4
Q ss_pred eEEEEEeecCCCCCCCC----hHHHHHhhh---C-----CCCccEEEEcCCCCC----------HHHHHHHhhhCCcEEE
Q 029629 2 VLVLAIGDLHIPHRASD----LPQKFKSML---V-----PGKIQHIICTGNLSI----------KEVHDYLKSLCPDLHV 59 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~----~~~~l~~~~---~-----~~~~D~vi~~GDl~~----------~~~~~~l~~l~~~~~~ 59 (190)
+.|++++|+|+...... -..++..++ + +...-.++.+||++. ....+.|+.++. =++
T Consensus 35 ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~-Da~ 113 (551)
T PRK09558 35 ITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGY-DAM 113 (551)
T ss_pred EEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCC-CEE
Confidence 47999999998532110 112222222 1 123468889999986 245566777653 466
Q ss_pred eccCCCCCC
Q 029629 60 TRGEYDEDS 68 (190)
Q Consensus 60 v~GNHD~~~ 68 (190)
+.||||...
T Consensus 114 tlGNHEFD~ 122 (551)
T PRK09558 114 AVGNHEFDN 122 (551)
T ss_pred cccccccCc
Confidence 679999874
No 97
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=98.56 E-value=3.2e-07 Score=74.32 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=42.5
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEeccCCCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
++.+++|+|+.. .++.+.+.+.-.....+.++++||++| .+++.+|..+. ..++.++||||..
T Consensus 52 ~~~vvGDiHG~~--~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 52 QVTICGDLHGKL--DDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred CeEEEEeCCCCH--HHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhh
Confidence 689999999853 233333332111112368999999999 36777666543 3589999999986
No 98
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.54 E-value=6e-06 Score=66.02 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=23.6
Q ss_pred Ccc-EEEeCCCCCcceEE-EcCeEEEccCCccC
Q 029629 108 DVD-ILVTGHTHQFKAYK-HEGGVVINPGSATG 138 (190)
Q Consensus 108 ~~~-~vi~GHtH~~~~~~-~~~~~~inpGs~~~ 138 (190)
+.+ +++.||+|...... .+++.++.||+.+.
T Consensus 218 ~id~~Ii~GHsH~~~~~~~~~~~~ivq~G~~g~ 250 (282)
T cd07407 218 DTPIQFLGGHSHVRDFTQYDSSSTGLESGRYLE 250 (282)
T ss_pred CCCEEEEeCCcccccceeccCcEEEEeccchhh
Confidence 456 79999999754433 37899999999884
No 99
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=98.53 E-value=2.1e-06 Score=69.16 Aligned_cols=62 Identities=26% Similarity=0.271 Sum_probs=42.6
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEeccCCCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-----KEVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
.+.+++|+|++. .++.+.+.+ ......+.++++||++| .+++..+..+. ..++.++||||..
T Consensus 44 ~i~vvGDIHG~~--~~L~~l~~~-~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 44 PVNVCGDIHGQF--YDLQALFKE-GGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred CEEEEEeCCCCH--HHHHHHHHh-cCCCCCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchH
Confidence 478999999853 233333322 23345688999999999 36666665442 3589999999975
No 100
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=98.51 E-value=7.6e-06 Score=66.34 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=40.5
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCC--------ccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEeccCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGK--------IQHIICTGNLSI-----KEVHDYLKSLC----PDLHVTRGEYD 65 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~--------~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD 65 (190)
.+.+++|+|++. .++.+.+.. +.... ...++++||++| .+++..+..+. ..++.++||||
T Consensus 49 ~~~viGDIHG~~--~~L~~ll~~-~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE 125 (311)
T cd07419 49 PIKIFGDIHGQF--GDLMRLFDE-YGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHE 125 (311)
T ss_pred CEEEEEeccCCH--HHHHHHHHH-cCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccc
Confidence 478999999863 233333322 21110 135889999999 36777776553 36899999999
Q ss_pred CC
Q 029629 66 ED 67 (190)
Q Consensus 66 ~~ 67 (190)
..
T Consensus 126 ~~ 127 (311)
T cd07419 126 DR 127 (311)
T ss_pred hH
Confidence 74
No 101
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=98.48 E-value=5.2e-06 Score=66.66 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=40.3
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHhhh----CCcEEEeccCCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLKSL----CPDLHVTRGEYDED 67 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~l----~~~~~~v~GNHD~~ 67 (190)
+.+++|+|++. .++.+.+.+ +.....+.++++||++|+ +++..+..+ ...++.++||||..
T Consensus 54 ~~ViGDIHG~~--~~L~~l~~~-~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQY--YDLLRIFEK-CGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCH--HHHHHHHHH-cCCCCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchH
Confidence 67899999863 233333333 223345688899999993 555554432 23689999999975
No 102
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.46 E-value=9.2e-06 Score=64.95 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=39.8
Q ss_pred eEEEEEeecCCCCCCCC---------------hHHHHHhhh---CCCCcc-EEEEcCCCCC----------HHHHHHHhh
Q 029629 2 VLVLAIGDLHIPHRASD---------------LPQKFKSML---VPGKIQ-HIICTGNLSI----------KEVHDYLKS 52 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~---------------~~~~l~~~~---~~~~~D-~vi~~GDl~~----------~~~~~~l~~ 52 (190)
.+|++++|+|+...... -..++..++ +++.++ .++.+||++. ....+.|+.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~ 80 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNL 80 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHh
Confidence 47999999997421100 022233322 234566 4555999997 245667777
Q ss_pred hCCcEEEeccCCCCCC
Q 029629 53 LCPDLHVTRGEYDEDS 68 (190)
Q Consensus 53 l~~~~~~v~GNHD~~~ 68 (190)
++.. +++.||||...
T Consensus 81 ~g~D-~~~lGNHefd~ 95 (281)
T cd07409 81 LGYD-AMTLGNHEFDD 95 (281)
T ss_pred cCCC-EEEeccccccC
Confidence 7643 55679999874
No 103
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=98.36 E-value=1.3e-06 Score=72.05 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=41.2
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCC-CccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEeccCCCCC
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPG-KIQHIICTGNLSI-----KEVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~-~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
++.+++|+|+.. .++.+.+.. .... .-+.++++||++| .+++..+..+. ..++.++||||..
T Consensus 67 ~i~VvGDIHG~~--~dL~~ll~~-~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 67 EVVVVGDVHGQL--HDVLFLLED-AGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred CEEEEEecCCCH--HHHHHHHHH-hCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccc
Confidence 579999999853 233333322 2211 2256999999999 36666666543 3589999999975
No 104
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.35 E-value=1.8e-05 Score=74.53 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHh-hccCccEEEeCCCCCcce--------------EEEcCeEEEccCCccC
Q 029629 102 MLQ-RQLDVDILVTGHTHQFKA--------------YKHEGGVVINPGSATG 138 (190)
Q Consensus 102 ~~~-~~~~~~~vi~GHtH~~~~--------------~~~~~~~~inpGs~~~ 138 (190)
.++ +-.++|+++.||+|.... ...++++++.||+.+.
T Consensus 261 ~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g~ 312 (1163)
T PRK09419 261 DLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWGK 312 (1163)
T ss_pred HHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhhc
Confidence 445 336899999999998653 2457889999999874
No 105
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.32 E-value=3.7e-05 Score=69.40 Aligned_cols=66 Identities=18% Similarity=0.062 Sum_probs=40.5
Q ss_pred eEEEEEeecCCCCCCCC----------hHHHHHhhh---C-CCCccEEEEcCCCCCH-------------------HHHH
Q 029629 2 VLVLAIGDLHIPHRASD----------LPQKFKSML---V-PGKIQHIICTGNLSIK-------------------EVHD 48 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~----------~~~~l~~~~---~-~~~~D~vi~~GDl~~~-------------------~~~~ 48 (190)
++|++.+|+|++....+ -+.++..++ + +..--+++.+||++.. ...+
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i~ 195 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMYA 195 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHHH
Confidence 58999999998632110 012222222 2 2233588999999971 1455
Q ss_pred HHhhhCCcEEEeccCCCCCC
Q 029629 49 YLKSLCPDLHVTRGEYDEDS 68 (190)
Q Consensus 49 ~l~~l~~~~~~v~GNHD~~~ 68 (190)
.|+.++ .-.+..||||+..
T Consensus 196 amN~LG-yDA~tLGNHEFDy 214 (814)
T PRK11907 196 ALEALG-FDAGTLGNHEFNY 214 (814)
T ss_pred HHhccC-CCEEEechhhccc
Confidence 566654 3578999999873
No 106
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.26 E-value=4.3e-05 Score=68.78 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=29.0
Q ss_pred ccCccEEEeCCCCCcceEEEcCeEEEccCCccC
Q 029629 106 QLDVDILVTGHTHQFKAYKHEGGVVINPGSATG 138 (190)
Q Consensus 106 ~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~ 138 (190)
-.++|+++.||+|.......++++++.||+.+.
T Consensus 275 v~gID~IlgGHsH~~~~~~ingv~vvqaG~~G~ 307 (780)
T PRK09418 275 VPGVDAVLMGHSHTEVKDVFNGVPVVMPGVFGS 307 (780)
T ss_pred CCCCCEEEECCCCCcccccCCCEEEEEcChhhc
Confidence 358999999999998877778999999999984
No 107
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.26 E-value=3.4e-05 Score=60.78 Aligned_cols=133 Identities=21% Similarity=0.265 Sum_probs=82.9
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC------HHHHHHHhhhCCcEEEeccCCCCCCC-------
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI------KEVHDYLKSLCPDLHVTRGEYDEDSR------- 69 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~~~~v~GNHD~~~~------- 69 (190)
||++++|+=+..+...+.+.+.++.++.++|+++..||... ++..+.|.+++..+.. .|||++...
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D~iT-lGNH~fD~gel~~~l~ 79 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGVDVIT-MGNHTWDKKEILDFID 79 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCCCEEE-ecccccCcchHHHHHh
Confidence 68999999986544344455555555678999999999975 5788899988765444 499987531
Q ss_pred ----------CC------cceEEEeCCEEEEEee--CCccC-CCCC----------------------------HHHHHH
Q 029629 70 ----------YP------ETKTLTIGQFKLGICH--GHQVI-PWGD----------------------------LDSLAM 102 (190)
Q Consensus 70 ----------~p------~~~~~~~~~~~i~~~H--g~~~~-~~~~----------------------------~~~~~~ 102 (190)
+| ...+++.+|.+|.++- |.... +..+ .+. ..
T Consensus 80 ~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~~~D~IIV~~H~g~tsEk-~a 158 (255)
T cd07382 80 EEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELKEEADIIFVDFHAEATSEK-IA 158 (255)
T ss_pred cCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhcCCCEEEEEECCCCCHHH-HH
Confidence 12 1345567788876654 22111 0011 111 11
Q ss_pred Hhh--ccCccEEEeCCCCCcceEE--E-cCeEEEc-cCCcc
Q 029629 103 LQR--QLDVDILVTGHTHQFKAYK--H-EGGVVIN-PGSAT 137 (190)
Q Consensus 103 ~~~--~~~~~~vi~GHtH~~~~~~--~-~~~~~in-pGs~~ 137 (190)
++. ..++|+++.||||.+.... . +|+.++. .|-+|
T Consensus 159 la~~ldg~VdvIvGtHTHv~t~d~~il~~gTa~itd~Gm~G 199 (255)
T cd07382 159 LGWYLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTG 199 (255)
T ss_pred HHHhCCCCceEEEeCCCCccCCccEEeeCCeEEEecCcccc
Confidence 222 2258999999999986533 4 7886664 44443
No 108
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.26 E-value=4.1e-05 Score=67.70 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=25.8
Q ss_pred ccCccEEEeCCCCCcceE--------------EEcCeEEEccCCccC
Q 029629 106 QLDVDILVTGHTHQFKAY--------------KHEGGVVINPGSATG 138 (190)
Q Consensus 106 ~~~~~~vi~GHtH~~~~~--------------~~~~~~~inpGs~~~ 138 (190)
-.++|+++.||+|..... ..++++++.||+.+.
T Consensus 226 v~gID~Il~GHsH~~~~~~~~~~~~~~d~~~~~i~g~~vvqaG~~G~ 272 (626)
T TIGR01390 226 VPGIDAVLFGHSHAVFPGKDFATIPGADITNGTINGVPAVMAGYWGN 272 (626)
T ss_pred CCCCCEEEcCCCCccCcCcccccCCcccccccccCCEEEEeCChhhc
Confidence 458999999999996421 246789999999884
No 109
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.19 E-value=3.7e-05 Score=67.03 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=40.9
Q ss_pred eEEEEEeecCCCCCCCC---------------hHHHHHhhh----CCCCccEEEEcCCCCC----------HHHHHHHhh
Q 029629 2 VLVLAIGDLHIPHRASD---------------LPQKFKSML----VPGKIQHIICTGNLSI----------KEVHDYLKS 52 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~---------------~~~~l~~~~----~~~~~D~vi~~GDl~~----------~~~~~~l~~ 52 (190)
.+|++++|+|+...... -..++...+ ++...-+++.+||.+. ....+.|+.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~ 80 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNA 80 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhc
Confidence 36999999998521100 012222222 2333468889999987 244566666
Q ss_pred hCCcEEEeccCCCCCC
Q 029629 53 LCPDLHVTRGEYDEDS 68 (190)
Q Consensus 53 l~~~~~~v~GNHD~~~ 68 (190)
++ --.++.||||+..
T Consensus 81 ~g-~Da~~lGNHEFd~ 95 (550)
T TIGR01530 81 AG-FDFFTLGNHEFDA 95 (550)
T ss_pred cC-CCEEEeccccccC
Confidence 64 3588999999873
No 110
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.16 E-value=7e-05 Score=59.26 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=49.8
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC------HHHHHHHhhhCCcEEEeccCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI------KEVHDYLKSLCPDLHVTRGEYDED 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
|||++++|+=+..+...+.+.+.++.++.++|+++..||... ++.++.|.+.+..++.+ |||.+.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~-GNH~~D 71 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITM-GNHTWF 71 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEc-cchhcc
Confidence 899999999975433334445555555678999999999985 57889999988766666 999875
No 111
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.15 E-value=5.4e-06 Score=68.60 Aligned_cols=67 Identities=18% Similarity=0.097 Sum_probs=45.6
Q ss_pred eEEEEEeecCCCCCCC------C---------hHHHHHhhhCCCCccEEEEcCCCCC----------HHHHHHHhhhC--
Q 029629 2 VLVLAIGDLHIPHRAS------D---------LPQKFKSMLVPGKIQHIICTGNLSI----------KEVHDYLKSLC-- 54 (190)
Q Consensus 2 mri~~iSD~H~~~~~~------~---------~~~~l~~~~~~~~~D~vi~~GDl~~----------~~~~~~l~~l~-- 54 (190)
.|++.+||.|+-.... . +.+.+.......+||.++++|||+| .+-+++++++.
T Consensus 49 ~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~ 128 (410)
T KOG3662|consen 49 TKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGR 128 (410)
T ss_pred eEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCC
Confidence 5899999999853111 0 1112222223578999999999999 13455666653
Q ss_pred ---CcEEEeccCCCCCC
Q 029629 55 ---PDLHVTRGEYDEDS 68 (190)
Q Consensus 55 ---~~~~~v~GNHD~~~ 68 (190)
.++..++||||...
T Consensus 129 k~~~~~~~i~GNhDIGf 145 (410)
T KOG3662|consen 129 KGNIKVIYIAGNHDIGF 145 (410)
T ss_pred CCCCeeEEeCCcccccc
Confidence 57999999999863
No 112
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.14 E-value=7e-05 Score=60.81 Aligned_cols=65 Identities=15% Similarity=0.037 Sum_probs=38.2
Q ss_pred eEEEEEeecCCCCCCCChHHH----HHhhhCC----CCccEEEEcCCCCCH------------------HHHHHHhhhCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQK----FKSMLVP----GKIQHIICTGNLSIK------------------EVHDYLKSLCP 55 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~----l~~~~~~----~~~D~vi~~GDl~~~------------------~~~~~l~~l~~ 55 (190)
.+|++.+|+|+......-..+ +.++-++ .+.-+++.+||++.. ...+.|+.++
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g- 79 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG- 79 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC-
Confidence 379999999985321111122 2221111 234589999999862 2344555554
Q ss_pred cEEEeccCCCCC
Q 029629 56 DLHVTRGEYDED 67 (190)
Q Consensus 56 ~~~~v~GNHD~~ 67 (190)
-=.++.||||..
T Consensus 80 ~Da~tlGNHEFD 91 (313)
T cd08162 80 VQAIALGNHEFD 91 (313)
T ss_pred CcEEeccccccc
Confidence 247889999976
No 113
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.12 E-value=1.3e-05 Score=69.45 Aligned_cols=66 Identities=23% Similarity=0.214 Sum_probs=43.1
Q ss_pred eEEEEEeecCCCCCC----------CCh--HHH-HHhhhCCCCccEEEEcCCCCC-----------HHHHHHHhhhCCcE
Q 029629 2 VLVLAIGDLHIPHRA----------SDL--PQK-FKSMLVPGKIQHIICTGNLSI-----------KEVHDYLKSLCPDL 57 (190)
Q Consensus 2 mri~~iSD~H~~~~~----------~~~--~~~-l~~~~~~~~~D~vi~~GDl~~-----------~~~~~~l~~l~~~~ 57 (190)
++|++.+|+|+.... ..+ ... +.++.++.+..+++.+||+++ ....+.|+.++ .=
T Consensus 27 l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~-yD 105 (517)
T COG0737 27 LTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG-YD 105 (517)
T ss_pred EEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcC-Cc
Confidence 579999999985430 011 112 222223344678999999997 24566777764 45
Q ss_pred EEeccCCCCCC
Q 029629 58 HVTRGEYDEDS 68 (190)
Q Consensus 58 ~~v~GNHD~~~ 68 (190)
+...|||+...
T Consensus 106 a~tiGNHEFd~ 116 (517)
T COG0737 106 AMTLGNHEFDY 116 (517)
T ss_pred EEeeccccccc
Confidence 88899999874
No 114
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.08 E-value=0.00013 Score=64.80 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=26.0
Q ss_pred hccCccEEEeCCCCCcce--------------EEEcCeEEEccCCccC
Q 029629 105 RQLDVDILVTGHTHQFKA--------------YKHEGGVVINPGSATG 138 (190)
Q Consensus 105 ~~~~~~~vi~GHtH~~~~--------------~~~~~~~~inpGs~~~ 138 (190)
+-.++|+++.||+|.... ...++++++.||+.+.
T Consensus 248 ~v~gID~Il~GHsH~~~p~~~~~~~~~~d~~~g~i~g~pvv~aG~~G~ 295 (649)
T PRK09420 248 EVPGIDAIMFGHSHAVFPGKDFADIPGADIAKGTLNGVPAVMPGRWGD 295 (649)
T ss_pred cCCCCCEEEeCCCCccCcCcccccCCccccccccCCCEEEEeCChhhc
Confidence 346899999999998542 1246789999999874
No 115
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=97.43 E-value=0.00053 Score=52.23 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=51.4
Q ss_pred EEEEeecCCCCCCCChHHHHHhhh---C-CCCccEEEEcCCCCCH----------------------HHHHHHhhhC--C
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSML---V-PGKIQHIICTGNLSIK----------------------EVHDYLKSLC--P 55 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~---~-~~~~D~vi~~GDl~~~----------------------~~~~~l~~l~--~ 55 (190)
|+++||.|..... ...+.|.+++ . ..+|+.+|++|++++. ...+.+.++. .
T Consensus 1 Iv~~Sg~~~~~~~-~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (209)
T PF04042_consen 1 IVFASGPFLDSDN-LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPST 79 (209)
T ss_dssp EEEEES--CTTT--HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCS
T ss_pred CEEEecCccCCCH-hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhccccc
Confidence 6899999986322 2245555554 4 6679999999999981 0111222222 5
Q ss_pred cEEEeccCCCCCCC--CC----------------------cceEEEeCCEEEEEeeCCc
Q 029629 56 DLHVTRGEYDEDSR--YP----------------------ETKTLTIGQFKLGICHGHQ 90 (190)
Q Consensus 56 ~~~~v~GNHD~~~~--~p----------------------~~~~~~~~~~~i~~~Hg~~ 90 (190)
++++|||++|.... +| ..-.+.++|..|+++++..
T Consensus 80 ~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d~ 138 (209)
T PF04042_consen 80 QVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGDI 138 (209)
T ss_dssp EEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSHH
T ss_pred EEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCcH
Confidence 79999999998742 22 2345678999999999754
No 116
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.33 E-value=0.00049 Score=55.90 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=39.5
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhh--CCCCccEEEEcCCCCC------------HHHHHHHhhh----------CCcE
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSML--VPGKIQHIICTGNLSI------------KEVHDYLKSL----------CPDL 57 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~--~~~~~D~vi~~GDl~~------------~~~~~~l~~l----------~~~~ 57 (190)
|||++-+=.|+.. +++.+.+..+- ...++|.++|+||+-. +.-++.|..+ ..+.
T Consensus 1 MrIaVqGCcHG~L--d~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlT 78 (456)
T KOG2863|consen 1 MRIAVQGCCHGEL--DNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLT 78 (456)
T ss_pred CceeeecccchhH--HHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeE
Confidence 8999999999732 22232222221 2358999999999864 1122222221 1356
Q ss_pred EEeccCCCCC
Q 029629 58 HVTRGEYDED 67 (190)
Q Consensus 58 ~~v~GNHD~~ 67 (190)
++|-|||+..
T Consensus 79 IFIGGNHEAs 88 (456)
T KOG2863|consen 79 IFIGGNHEAS 88 (456)
T ss_pred EEecCchHHH
Confidence 8999999976
No 117
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=97.32 E-value=0.0068 Score=49.55 Aligned_cols=63 Identities=24% Similarity=0.242 Sum_probs=40.9
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHhhh----CCcEEEeccCCCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLKSL----CPDLHVTRGEYDEDS 68 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~l----~~~~~~v~GNHD~~~ 68 (190)
|.+++|+|+.. .++++.+........-...+++||++|+ |++-+|-.+ ...++.++|||+...
T Consensus 61 V~i~GDiHGq~--~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~ 132 (331)
T KOG0374|consen 61 VKIVGDIHGQF--GDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECAS 132 (331)
T ss_pred EEEEccCcCCH--HHHHHHHHhcCCCCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEecccccccc
Confidence 67899999853 3455554432212244678899999993 333333322 257999999999873
No 118
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=97.26 E-value=0.001 Score=52.27 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=36.3
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH----HHHHHHhhhC----CcEEEeccCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK----EVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~----~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
.|++.+||+|.-. .-+.+ -..-|.++++||...- ++...=+.++ ..-++|+|||+..
T Consensus 62 ~r~VcisdtH~~~------~~i~~---~p~gDvlihagdfT~~g~~~ev~~fn~~~gslph~yKIVIaGNHELt 126 (305)
T KOG3947|consen 62 ARFVCISDTHELT------FDIND---IPDGDVLIHAGDFTNLGLPEEVIKFNEWLGSLPHEYKIVIAGNHELT 126 (305)
T ss_pred eEEEEecCccccc------Ccccc---CCCCceEEeccCCccccCHHHHHhhhHHhccCcceeeEEEeecccee
Confidence 4789999999632 11122 2456999999999982 3322222222 2357899999865
No 119
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=97.24 E-value=0.062 Score=41.83 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=60.1
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC------HHHHHHHhhhCCcEEEeccCCCCCC-------
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI------KEVHDYLKSLCPDLHVTRGEYDEDS------- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~~~~v~GNHD~~~------- 68 (190)
||+++++|+=+..+...+.+.|..+-.+.++|++|..|--.. +..++.|.+.+. =++..|||=+..
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~-dviT~GNH~wd~~ei~~~i 79 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGA-DVITLGNHTWDQKEILDFI 79 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCC-CEEecccccccchHHHHHh
Confidence 899999999986443333444444445778999999998775 577888888775 467899997652
Q ss_pred ----------CCCc------ceEEEeCCEEEEEee
Q 029629 69 ----------RYPE------TKTLTIGQFKLGICH 87 (190)
Q Consensus 69 ----------~~p~------~~~~~~~~~~i~~~H 87 (190)
.+|. ...+..+|.++.++-
T Consensus 80 ~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~N 114 (266)
T COG1692 80 DNADRILRPANYPDGTPGKGSRIFKINGKKLAVIN 114 (266)
T ss_pred hcccceeccCCCCCCCCcceEEEEEeCCcEEEEEE
Confidence 2232 456677888877765
No 120
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.72 E-value=0.0027 Score=48.48 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=35.6
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHh----hhCCcEEEeccCCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLK----SLCPDLHVTRGEYDED 67 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~----~l~~~~~~v~GNHD~~ 67 (190)
+-+.+|+|+.. .++.+.+.. -..-.---.|+.||++|+ |+...|- +....+..++|||+..
T Consensus 48 VTvCGDIHGQF--yDL~eLFrt-gG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 48 VTVCGDIHGQF--YDLLELFRT-GGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eeEeeccchhH--HHHHHHHHh-cCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhh
Confidence 45779999742 233333321 111223457788999994 4333332 2234689999999976
No 121
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.67 E-value=0.0038 Score=48.37 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=37.5
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHhhh----CCcEEEeccCCCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLKSL----CPDLHVTRGEYDEDS 68 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~l----~~~~~~v~GNHD~~~ 68 (190)
+.+.+|+|+.. .++++.+ ++-..-.-.-.+++||++|+ ++.-+|--+ ...+..++|||+...
T Consensus 45 vtvcGDIHGQf--~Dllelf-~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 45 VTVCGDIHGQF--YDLLELF-RIGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQ 115 (303)
T ss_pred cEEeecccchH--HHHHHHH-HhCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhh
Confidence 46889999842 2233322 22222334668899999994 333333222 246899999999863
No 122
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=96.44 E-value=0.0074 Score=51.13 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=41.0
Q ss_pred HHHHHhhcc-CccEEEeCCCCCcceEEE---------cCeEEEccCCccCCCCCCCCCCCCeEEEEEE---eCCEEEEEE
Q 029629 99 SLAMLQRQL-DVDILVTGHTHQFKAYKH---------EGGVVINPGSATGAYSSFTFDVNPSFVLMDI---DGLRVVVYV 165 (190)
Q Consensus 99 ~~~~~~~~~-~~~~vi~GHtH~~~~~~~---------~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i---~~~~~~~~~ 165 (190)
++..+++++ ++..++|||.|....... .|-+-|+..|+-. -+..+.++|| .++.+++..
T Consensus 389 eLlaLL~~hPnVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaSl~D--------fPQq~R~~Ei~~n~d~tvsi~t 460 (492)
T TIGR03768 389 GLVTTLQKYPNLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETASLRD--------FPQQFRTFEIYLNSDDTVSIEA 460 (492)
T ss_pred HHHHHHhcCCCeEEEEcCCcccccccccCCCCCCCCcCceEEEeehhhcc--------chhhceEEEEEeCCCCeEEEEE
Confidence 455555544 677899999997665432 3556677766642 3566777777 356677777
Q ss_pred EEee
Q 029629 166 YELI 169 (190)
Q Consensus 166 ~~l~ 169 (190)
..++
T Consensus 461 t~vd 464 (492)
T TIGR03768 461 VNVD 464 (492)
T ss_pred Eecc
Confidence 6665
No 123
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=96.30 E-value=0.015 Score=50.44 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=28.4
Q ss_pred CccEEEEcCCCCC---------------HHHHHHHhhhC--CcEEEeccCCCCCC
Q 029629 31 KIQHIICTGNLSI---------------KEVHDYLKSLC--PDLHVTRGEYDEDS 68 (190)
Q Consensus 31 ~~D~vi~~GDl~~---------------~~~~~~l~~l~--~~~~~v~GNHD~~~ 68 (190)
++|+|+.+||... ..+.+.|++.. .|+|...||||...
T Consensus 210 ~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P 264 (577)
T KOG3770|consen 210 DIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHP 264 (577)
T ss_pred CCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCc
Confidence 3999999999996 12334444544 58999999999863
No 124
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=96.20 E-value=0.29 Score=41.28 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=46.1
Q ss_pred EEEEEeecCCCCCCCChHHHHHhhhC---CCCccEEEEcCCCCC-----------HHHHHHHhhh---------CCcEEE
Q 029629 3 LVLAIGDLHIPHRASDLPQKFKSMLV---PGKIQHIICTGNLSI-----------KEVHDYLKSL---------CPDLHV 59 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~---~~~~D~vi~~GDl~~-----------~~~~~~l~~l---------~~~~~~ 59 (190)
.++++||.|++. ....+++.++++ ...|-+||.+|-+.. ++.++.|+.. ...+++
T Consensus 284 ~fVfLSdV~LD~--~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIF 361 (525)
T KOG3818|consen 284 SFVFLSDVFLDD--KKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQFIF 361 (525)
T ss_pred eEEEEehhcccc--HHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceEEE
Confidence 578899999963 345677777764 456899999999986 2334444332 136899
Q ss_pred eccCCCCCC
Q 029629 60 TRGEYDEDS 68 (190)
Q Consensus 60 v~GNHD~~~ 68 (190)
|||-.|.+.
T Consensus 362 VPGP~Dp~~ 370 (525)
T KOG3818|consen 362 VPGPNDPWV 370 (525)
T ss_pred ecCCCCCCc
Confidence 999999985
No 125
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.00 E-value=0.15 Score=40.04 Aligned_cols=126 Identities=19% Similarity=0.155 Sum_probs=69.8
Q ss_pred EEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC------HHHHHHHhhhCCcEEEeccCCCCCC----------
Q 029629 5 LAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI------KEVHDYLKSLCPDLHVTRGEYDEDS---------- 68 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~~~~v~GNHD~~~---------- 68 (190)
++++|+=+..+...+.+.|.++.++.++|+||..|.=.. +..++.|.+.+. =++..|||=+.-
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~Gv-DviT~GNH~wdkkei~~~i~~~ 79 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFKAGV-DVITMGNHIWDKKEIFDFIDKE 79 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT--SEEE--TTTTSSTTHHHHHHH-
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHhcCC-CEEecCcccccCcHHHHHHhcC
Confidence 577888764333334455666667789999999998776 577888888874 367899997652
Q ss_pred -------CCCc------ceEEEeCCEEEEEee--CCccCCCC-CH----------------------------HH-HHHH
Q 029629 69 -------RYPE------TKTLTIGQFKLGICH--GHQVIPWG-DL----------------------------DS-LAML 103 (190)
Q Consensus 69 -------~~p~------~~~~~~~~~~i~~~H--g~~~~~~~-~~----------------------------~~-~~~~ 103 (190)
.+|. ..+++.++.++.++- |..+.+.. .+ |. ...+
T Consensus 80 ~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l~~~~~~iiVDFHAEaTSEK~A~g~ 159 (253)
T PF13277_consen 80 PRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEELKEETDIIIVDFHAEATSEKQAMGW 159 (253)
T ss_dssp SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH-----SEEEEEEE-S-HHHHHHHHH
T ss_pred CCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhccccCCEEEEEeecCcHHHHHHHHH
Confidence 2332 456777888887776 43322111 10 10 0111
Q ss_pred hhccCccEEEeCCCCCcceEE---EcCeEEE
Q 029629 104 QRQLDVDILVTGHTHQFKAYK---HEGGVVI 131 (190)
Q Consensus 104 ~~~~~~~~vi~GHtH~~~~~~---~~~~~~i 131 (190)
.-+-.+.+++--|||.+-... .+|+.|+
T Consensus 160 ~lDGrvsaV~GTHTHVqTaDerILp~GTaYi 190 (253)
T PF13277_consen 160 YLDGRVSAVVGTHTHVQTADERILPGGTAYI 190 (253)
T ss_dssp HHBTTBSEEEEESSSS-BS--EE-TTS-EEE
T ss_pred HhCCcEEEEEeCCCCccCchhhccCCCCEEE
Confidence 124578999999999976532 2477666
No 126
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=95.61 E-value=0.014 Score=47.65 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=38.0
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHhhhC----CcEEEeccCCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
|-+.+|||+.. .++.+.+ +.=....--..+++||.+|+ +++-+|=.+. ..+..++|||+..
T Consensus 90 iTVCGDIHGQf--~DLmKLF-EVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 90 ITVCGDIHGQF--FDLMKLF-EVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECR 159 (517)
T ss_pred eeEecccchHH--HHHHHHH-HccCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchh
Confidence 56889999742 2232222 22123334678889999994 5555544443 3578899999986
No 127
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=95.56 E-value=0.039 Score=44.08 Aligned_cols=65 Identities=14% Similarity=0.020 Sum_probs=43.4
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCC--------CCccEEEEcCCCCCH-------------HHHHHHhh-----h--
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVP--------GKIQHIICTGNLSIK-------------EVHDYLKS-----L-- 53 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~--------~~~D~vi~~GDl~~~-------------~~~~~l~~-----l-- 53 (190)
.+++++||+|++. ...+++|.++++. +-|-.+|++|+++.. +..+.|.. .
T Consensus 28 ~~~VilSDV~LD~--p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDS--PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCC--HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 4789999999963 3445666655421 238899999999861 22333332 1
Q ss_pred ---CCcEEEeccCCCCCC
Q 029629 54 ---CPDLHVTRGEYDEDS 68 (190)
Q Consensus 54 ---~~~~~~v~GNHD~~~ 68 (190)
...+++|||-.|.+.
T Consensus 106 L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPCA 123 (291)
T ss_pred HHhcCeEEEECCCCCCCc
Confidence 146899999999864
No 128
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=95.54 E-value=0.087 Score=44.86 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=14.7
Q ss_pred CCCCccEEEEcCCCCCH
Q 029629 28 VPGKIQHIICTGNLSIK 44 (190)
Q Consensus 28 ~~~~~D~vi~~GDl~~~ 44 (190)
.....|++|.+||-+|.
T Consensus 96 ~~~p~df~is~GD~~nn 112 (492)
T TIGR03768 96 KRDRFDFGISLGDACNS 112 (492)
T ss_pred cCCCceEEEeccccccc
Confidence 46779999999999993
No 129
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=95.31 E-value=0.022 Score=44.62 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=39.5
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHhhhC----CcEEEeccCCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
+.+.+|+|+.. .++.+.+ ++=....---.++.||.+++ ++...|-.+. ..+.+++|||+..
T Consensus 62 vtvcGDvHGqf--~dl~ELf-kiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 62 VTVCGDVHGQF--HDLIELF-KIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eEEecCcchhH--HHHHHHH-HccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHH
Confidence 46889999853 2344433 32122223457788999993 5666665544 5789999999976
No 130
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=93.13 E-value=0.37 Score=37.47 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=30.6
Q ss_pred CEEEEEeeCCccCCCC---CHHHHHHHhhccCccEEEeCCCCCcceE-EEcCeEEE
Q 029629 80 QFKLGICHGHQVIPWG---DLDSLAMLQRQLDVDILVTGHTHQFKAY-KHEGGVVI 131 (190)
Q Consensus 80 ~~~i~~~Hg~~~~~~~---~~~~~~~~~~~~~~~~vi~GHtH~~~~~-~~~~~~~i 131 (190)
+.-|+++|.+...... ...++...+.+.++|+++.||+|..... ..++++++
T Consensus 174 D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e~~~~~~I~ 229 (239)
T smart00854 174 DVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQPIEIYKGKLIA 229 (239)
T ss_pred CEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCCceEEECCEEEE
Confidence 4567888865432211 1223333333468999999999997543 34565543
No 131
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=92.37 E-value=0.81 Score=40.04 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=39.8
Q ss_pred eEEEEEeecCCCCC----CC----------ChHHHHHhhhCCCCccEE-EEcCCCCC----------H-HHHHHHhhhCC
Q 029629 2 VLVLAIGDLHIPHR----AS----------DLPQKFKSMLVPGKIQHI-ICTGNLSI----------K-EVHDYLKSLCP 55 (190)
Q Consensus 2 mri~~iSD~H~~~~----~~----------~~~~~l~~~~~~~~~D~v-i~~GDl~~----------~-~~~~~l~~l~~ 55 (190)
+++.+.||+|+... .. .+...+.+..++.++|.+ +-+||..+ + +.-..|.++..
T Consensus 43 ~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~~~~~ 122 (602)
T KOG4419|consen 43 PNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLFKMMP 122 (602)
T ss_pred ccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCceeeeccCCchHHHHHHHhcCc
Confidence 57899999998432 00 112234444556677765 45899987 1 22344444432
Q ss_pred cEEEeccCCCCCC
Q 029629 56 DLHVTRGEYDEDS 68 (190)
Q Consensus 56 ~~~~v~GNHD~~~ 68 (190)
-=..+.|||+...
T Consensus 123 yD~l~lGNHEl~~ 135 (602)
T KOG4419|consen 123 YDILTLGNHELYQ 135 (602)
T ss_pred cchhhhcchhhhh
Confidence 2567889999763
No 132
>PHA03008 hypothetical protein; Provisional
Probab=91.15 E-value=0.84 Score=34.38 Aligned_cols=56 Identities=7% Similarity=-0.050 Sum_probs=38.6
Q ss_pred CEEEEEeeCCccCCC---CCHHHHHHHhhccCccEEEeCC---CCCcceEEEcCeEEEccCC
Q 029629 80 QFKLGICHGHQVIPW---GDLDSLAMLQRQLDVDILVTGH---THQFKAYKHEGGVVINPGS 135 (190)
Q Consensus 80 ~~~i~~~Hg~~~~~~---~~~~~~~~~~~~~~~~~vi~GH---tH~~~~~~~~~~~~inpGs 135 (190)
+..|+++||+|.... .+...|.+.+.+.++.+-++|| .-.|.....+.+.++|+--
T Consensus 161 ~tDILITHgPP~GhLD~~vGC~~Ll~~I~rVKPKyHVFGh~~~~~~p~~~~y~di~f~nsni 222 (234)
T PHA03008 161 KCDILITASPPFAILDDDLACGDLFSKVIKIKPKFHIFNGLTQFSHPNIFIYKDIIFINSNI 222 (234)
T ss_pred CCCEEEeCCCCccccccccCcHHHHHHHHHhCCcEEEeCCccccCCCcEEEecceEEEeccc
Confidence 467999999986432 2334454444466889999999 3336667777888988744
No 133
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=90.73 E-value=0.82 Score=35.44 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=31.4
Q ss_pred CCEEEEEeeCCccCCCCC---HHHHHHHhhccCccEEEeCCCCCcceE-EEcCeEEE
Q 029629 79 GQFKLGICHGHQVIPWGD---LDSLAMLQRQLDVDILVTGHTHQFKAY-KHEGGVVI 131 (190)
Q Consensus 79 ~~~~i~~~Hg~~~~~~~~---~~~~~~~~~~~~~~~vi~GHtH~~~~~-~~~~~~~i 131 (190)
.+.-|+++|.+....... ...+...+...++|+++.||+|..+.. ..++++++
T Consensus 175 ~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E~~~~~~I~ 231 (239)
T cd07381 175 ADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQGIEIYKGKLIF 231 (239)
T ss_pred CCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeEEECCEEEE
Confidence 356688888654322111 223333333569999999999997653 34555443
No 134
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.86 E-value=1.1 Score=38.35 Aligned_cols=64 Identities=25% Similarity=0.314 Sum_probs=38.1
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHhh--hC--CcEEEeccCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLKS--LC--PDLHVTRGEYDED 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~--l~--~~~~~v~GNHD~~ 67 (190)
.++.+.+|+|+.. .+++..+...-....-.-.+..||+++. ++...+.. +. ..++..+|||+..
T Consensus 214 ~~~sv~gd~hGqf--ydl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~ 286 (476)
T KOG0376|consen 214 VKISVCGDTHGQF--YDLLNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESD 286 (476)
T ss_pred ceEEecCCccccc--cchhhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccch
Confidence 3688999999843 2333433322233334567788999983 22222221 21 3689999999765
No 135
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=89.10 E-value=1.6 Score=34.21 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=33.8
Q ss_pred CCEEEEEeeCCccC---CCCCHHHHHHHhhccCccEEEeCCCCCcceE-EEcCeEEE-ccCC
Q 029629 79 GQFKLGICHGHQVI---PWGDLDSLAMLQRQLDVDILVTGHTHQFKAY-KHEGGVVI-NPGS 135 (190)
Q Consensus 79 ~~~~i~~~Hg~~~~---~~~~~~~~~~~~~~~~~~~vi~GHtH~~~~~-~~~~~~~i-npGs 135 (190)
.+..|+.+|.+... |......+...+.+.++|+|+.+|.|..+.. ..++.+++ ..|.
T Consensus 184 ~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~~~~I~YSLGN 245 (250)
T PF09587_consen 184 ADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHPHVIQPVEIYKGKPIFYSLGN 245 (250)
T ss_pred CCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEECCEEEEEeCcc
Confidence 35678888965432 2122233444444679999999999996653 34454443 3443
No 136
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=88.12 E-value=0.63 Score=31.53 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=39.1
Q ss_pred CeEEEEEeecCCC-------------CCCCChHHHHHhhhCCCCccEEEEcCCCCC--HHHHHHHhhhCCc-EEEeccCC
Q 029629 1 MVLVLAIGDLHIP-------------HRASDLPQKFKSMLVPGKIQHIICTGNLSI--KEVHDYLKSLCPD-LHVTRGEY 64 (190)
Q Consensus 1 Mmri~~iSD~H~~-------------~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~-~~~v~GNH 64 (190)
|||+++++|--.- ...++..+.+.++ .+.++..|+++=++.+ ++.++.+++...| ++.+|++|
T Consensus 3 ~~kIaVIGD~dtv~GFrLaGi~~~~v~~~ee~~~~i~~l-~~~d~gII~Ite~~a~~i~~~i~~~~~~~~P~Il~IP~~~ 81 (104)
T PRK01395 3 MYKIGVVGDKDSILPFKALGIDVFPVIDEQEAINTLRKL-AMEDYGIIYITEQIAADIPETIERYDNQVLPAIILIPSNQ 81 (104)
T ss_pred ceeEEEEECHHHHHHHHHcCCeeEEecChHHHHHHHHHH-hcCCcEEEEEcHHHHHHhHHHHHHhcCCCCCEEEEeCCCC
Confidence 6799999993210 0112334455554 3678899999888877 3455555433345 56788877
Q ss_pred C
Q 029629 65 D 65 (190)
Q Consensus 65 D 65 (190)
=
T Consensus 82 g 82 (104)
T PRK01395 82 G 82 (104)
T ss_pred C
Confidence 4
No 137
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=87.55 E-value=0.3 Score=42.98 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=37.9
Q ss_pred ChHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHhhhCCcEEEeccCCCCC
Q 029629 18 DLPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLKSLCPDLHVTRGEYDED 67 (190)
Q Consensus 18 ~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
++..++.+++++.-+|.+=+.||++|+ .+++.|.+.. .+=+..||||..
T Consensus 171 ~fI~al~~lIqrL~VDhLHIvGDIyDRGp~pd~ImD~Lm~~h-svDIQWGNHDIl 224 (640)
T PF06874_consen 171 EFIIALSELIQRLAVDHLHIVGDIYDRGPRPDKIMDRLMNYH-SVDIQWGNHDIL 224 (640)
T ss_pred HHHHHHHHHHHHHhhhheeecccccCCCCChhHHHHHHhcCC-CccccccchHHH
Confidence 445566677778889999999999993 5677777653 467788999975
No 138
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=86.00 E-value=1.2 Score=38.10 Aligned_cols=39 Identities=3% Similarity=-0.053 Sum_probs=20.3
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI 43 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~ 43 (190)
+||++.|+.+...+ ....+..+.++.++|+++++||.+-
T Consensus 106 ~r~a~~SC~~~~~~---~~~~~~~~a~~~~~D~~l~lGD~IY 144 (453)
T PF09423_consen 106 FRFAFGSCQNYEDG---YFPAYRRIAERDDPDFVLHLGDQIY 144 (453)
T ss_dssp EEEEEE----CCC------HHHHHHTT-S--SEEEE-S-SS-
T ss_pred eEEEEECCCCcccC---hHHHHHhhhccCCCcEEEEeCCeee
Confidence 68999999986432 3466666665478999999999985
No 139
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.02 E-value=1.8 Score=36.88 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=40.0
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCC-ccEEEEcCCCCC-H----HHHHHHh---hhCCcEEEeccCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGK-IQHIICTGNLSI-K----EVHDYLK---SLCPDLHVTRGEYD 65 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~-~D~vi~~GDl~~-~----~~~~~l~---~l~~~~~~v~GNHD 65 (190)
.||++++|.-+. ...+.+++.++-++.+ .|.++|.|++++ + ++.+... ++..|+|+.-+|--
T Consensus 6 ~kILv~Gd~~Gr--~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vPiptY~~g~~~~ 76 (528)
T KOG2476|consen 6 AKILVCGDVEGR--FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVPIPTYFLGDNAN 76 (528)
T ss_pred ceEEEEcCcccc--HHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCceeEEEecCCCC
Confidence 389999999873 2344455555444555 899999999998 2 3333322 22357788777663
No 140
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=82.29 E-value=35 Score=30.13 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=30.8
Q ss_pred CccEEEeCCCCCcceEEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEe
Q 029629 108 DVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDID 157 (190)
Q Consensus 108 ~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~ 157 (190)
-+|++|.---=++.+.-.++..+||||-+.. +.+.++||-+.+.
T Consensus 535 ~PdIlIlPSdLr~Fvk~V~~~V~iNpGr~aK------g~~~Gtfa~lti~ 578 (600)
T KOG1625|consen 535 TPDILILPSDLRHFVKDVNGCVVINPGRLAK------GTNGGTFAKLTIR 578 (600)
T ss_pred CCcEEEechhhHHHHHhcCCeEEEcchhhcc------CcCCceeEEEEEe
Confidence 4566655443344555678999999999873 3357899999886
No 141
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=81.69 E-value=2.5 Score=28.28 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=38.1
Q ss_pred eEEEEEeecCCC--------------CCCCChHHHHHhhhCCCCccEEEEcCCCCC--HHHHHH-HhhhCCc-EEEecc
Q 029629 2 VLVLAIGDLHIP--------------HRASDLPQKFKSMLVPGKIQHIICTGNLSI--KEVHDY-LKSLCPD-LHVTRG 62 (190)
Q Consensus 2 mri~~iSD~H~~--------------~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~-l~~l~~~-~~~v~G 62 (190)
|||++++|--.- ...++..+.|.+++.+.++..|+++-++.+ ++.++. +++...| ++.+||
T Consensus 1 mkIaVIGD~dtv~GFrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 1 MEIAVIGSPEFTTGFRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 789999982210 011234557777666788999999999887 333443 4444445 455676
No 142
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=80.97 E-value=0.57 Score=39.63 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=33.8
Q ss_pred EEEEeecCCCCCCCChHHHHHhhh-C---CCCccEEEEcCCCCCH-----HHHHHHhhhC----CcEEEeccCCCCC
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSML-V---PGKIQHIICTGNLSIK-----EVHDYLKSLC----PDLHVTRGEYDED 67 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~-~---~~~~D~vi~~GDl~~~-----~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
+-+.+|+|+.. +++ .=++ + ...-.-.++.||++|+ |++-.|-.+. ..++.-+|||+..
T Consensus 167 VTiCGDLHGkl--DDL----~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~ 237 (631)
T KOG0377|consen 167 VTICGDLHGKL--DDL----LVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDH 237 (631)
T ss_pred eEEeccccccc--cce----EEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHH
Confidence 56789999742 222 1111 1 1112446788999993 4444444332 3478889999875
No 143
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=75.65 E-value=3 Score=28.75 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=43.8
Q ss_pred EEEEeeCCccCCC--CCHHHHHHHhhccCccEEEeCCCCCcceEEEcC--eEEEccCCccCCCCCCCCCCCCeEEEEEEe
Q 029629 82 KLGICHGHQVIPW--GDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEG--GVVINPGSATGAYSSFTFDVNPSFVLMDID 157 (190)
Q Consensus 82 ~i~~~Hg~~~~~~--~~~~~~~~~~~~~~~~~vi~GHtH~~~~~~~~~--~~~inpGs~~~~~~~~~~~~~~~~~ll~i~ 157 (190)
...++|+++..+. ..........+....+++.+||+|.+......+ ...+|+|+.+.++.. .+....|++++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~~~g~~~~~--~~~~~~f~~~~~~ 122 (155)
T COG0639 45 GKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDG--GDVTAVFGIVHTP 122 (155)
T ss_pred CceeeecCCCCcchhhhHHHHHHHhhhhcccCCCccccccccCCCCCCCcccccccCCCCCCccc--cchhhHHhhhccc
Confidence 3455555554443 223333333333344789999999984432332 689999999986432 2345567766654
Q ss_pred CC
Q 029629 158 GL 159 (190)
Q Consensus 158 ~~ 159 (190)
..
T Consensus 123 ~~ 124 (155)
T COG0639 123 KL 124 (155)
T ss_pred ce
Confidence 43
No 144
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=75.42 E-value=22 Score=28.88 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=50.3
Q ss_pred ccEEEEcCCCCC-HHHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEeeCCccCCC---------------C
Q 029629 32 IQHIICTGNLSI-KEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPW---------------G 95 (190)
Q Consensus 32 ~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~---------------~ 95 (190)
-.-++.+|+|+. +.+.+.|++.+. .++. ....+|+ ++.-++=.||-+.... .
T Consensus 30 ~~~iytlG~iIHN~~vv~~L~~~GV--~~v~----~~~~v~~------~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP 97 (298)
T PRK01045 30 GAPIYVRHEIVHNRYVVERLEKKGA--IFVE----ELDEVPD------GAIVIFSAHGVSPAVREEAKERGLTVIDATCP 97 (298)
T ss_pred CCCeEEEecCccCHHHHHHHHHCCC--EEec----CcccCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCc
Confidence 356999999997 789999999874 4443 1123332 4455666787553110 0
Q ss_pred CHHHH---HHHhhccCccEEEeCCCCCcceEEE
Q 029629 96 DLDSL---AMLQRQLDVDILVTGHTHQFKAYKH 125 (190)
Q Consensus 96 ~~~~~---~~~~~~~~~~~vi~GHtH~~~~~~~ 125 (190)
....+ ...+.+.++.+++.|...+|.+...
T Consensus 98 ~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi 130 (298)
T PRK01045 98 LVTKVHKEVARMSREGYEIILIGHKGHPEVEGT 130 (298)
T ss_pred cchHHHHHHHHHHhCCCEEEEEeCCCCCeeeee
Confidence 11112 2222356899999999988887544
No 145
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=71.73 E-value=4.8 Score=26.94 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=35.7
Q ss_pred eEEEEEeecCCC--------------CCCCChHHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCCC
Q 029629 2 VLVLAIGDLHIP--------------HRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYD 65 (190)
Q Consensus 2 mri~~iSD~H~~--------------~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD 65 (190)
|||++++|--.- ...++..+.|.+++++.++..|+++=++.+. .-+.+.+..+-++.+|+++-
T Consensus 1 mkIaVIgD~dtv~GFrLaGi~~~~~v~~~ee~~~~l~~l~~~~d~gII~ite~~~~~-i~~~i~~~~P~Ii~IP~~~g 77 (100)
T PRK03957 1 MKIAVVGDRDTVTGFRLAGLTEVYEVKNPEEAKNAIKELVENDEIGIIIITERIAEE-IRDLISVALPIIVEIPDKSG 77 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCCceEEeCCHHHHHHHHHHHhhCCCeEEEEEcHHHHHH-HHHHHhcCCCEEEEECCCCC
Confidence 689999983220 0112345566666666778888887766552 11222333333567887663
No 146
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=71.24 E-value=26 Score=28.18 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=63.5
Q ss_pred CeEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC-HHHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeC
Q 029629 1 MVLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI-KEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIG 79 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~ 79 (190)
||+|+..+.-=...+-....+...+.++..+.. |+..|-|+. +.+.+.|++.+ ++++....+ .| -+
T Consensus 1 ~~~I~lA~prGFCaGV~RAI~ive~al~~~g~p-Iyv~~eIVHN~~Vv~~L~~~g--~~fve~l~e----~p------~~ 67 (294)
T COG0761 1 MMKILLAKPRGFCAGVDRAIQIVERALEEYGAP-IYVRHEIVHNRYVVDRLREKG--AIFVEELDE----VP------DG 67 (294)
T ss_pred CceEEEecCCccchhHHHHHHHHHHHHHHcCCC-eEEEeccccCHHHHHHHHHcC--CEecccccc----CC------CC
Confidence 788887776654433222222233333343434 888999987 78889999876 677764433 33 23
Q ss_pred CEEEEEeeCCccC-----------------CCCC-HHHHHHHhhccCccEEEeCCCCCcceEE
Q 029629 80 QFKLGICHGHQVI-----------------PWGD-LDSLAMLQRQLDVDILVTGHTHQFKAYK 124 (190)
Q Consensus 80 ~~~i~~~Hg~~~~-----------------~~~~-~~~~~~~~~~~~~~~vi~GHtH~~~~~~ 124 (190)
+.-|+=.||-+.. |+-+ .....+...+.++.+++.||--+|...-
T Consensus 68 ~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~G 130 (294)
T COG0761 68 ATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIG 130 (294)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceee
Confidence 4445556764421 1100 0111223346789999999987777643
No 147
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=70.30 E-value=31 Score=27.71 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=50.3
Q ss_pred ccEEEEcCCCCC-HHHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEeeCCccCCC---------------C
Q 029629 32 IQHIICTGNLSI-KEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPW---------------G 95 (190)
Q Consensus 32 ~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~---------------~ 95 (190)
-.-|+.+|+|+. +.+.+.|++.+ +.++. +-| ...+|+ ++.-|+=.||-+.... .
T Consensus 31 ~~~vy~lG~iVHN~~Vv~~L~~~G--v~~v~-~~~-~~~v~~------~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP 100 (281)
T PRK12360 31 GKKIYTLGPLIHNNQVVSDLEEKG--VKTIE-ESE-IDSLKE------GDVVIIRSHGVSKKVYKDLKDKGLEIIDATCP 100 (281)
T ss_pred CCCeEEecCCcCCHHHHHHHHHCc--CEEEC-cCc-hhhCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCc
Confidence 356999999997 78999999987 45553 212 123331 3455666687553110 0
Q ss_pred CHHH---HHHHhhccCccEEEeCCCCCcceEEE
Q 029629 96 DLDS---LAMLQRQLDVDILVTGHTHQFKAYKH 125 (190)
Q Consensus 96 ~~~~---~~~~~~~~~~~~vi~GHtH~~~~~~~ 125 (190)
.... ......+.++.+++.|+-.+|.+.-.
T Consensus 101 ~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi 133 (281)
T PRK12360 101 FVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGI 133 (281)
T ss_pred cchHHHHHHHHHHhCCCEEEEEcCCCCceeeEe
Confidence 0111 22223356899999999888877543
No 148
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=63.87 E-value=3.6 Score=35.23 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=34.6
Q ss_pred hHHHHHhhhCCCCccEEEEcCCCCCH-----HHHHHHhhhCCcEEEeccCCCCC
Q 029629 19 LPQKFKSMLVPGKIQHIICTGNLSIK-----EVHDYLKSLCPDLHVTRGEYDED 67 (190)
Q Consensus 19 ~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
+.-++...+++.-+|.+=+.||+.|+ ...+.|.+.. .+=+-.||||..
T Consensus 178 ~I~ala~~iqrLvVDhLHiVGDIyDRGP~pd~Imd~L~~yh-svDiQWGNHDil 230 (648)
T COG3855 178 FIIALAYLIQRLVVDHLHIVGDIYDRGPYPDKIMDTLINYH-SVDIQWGNHDIL 230 (648)
T ss_pred HHHHHHHHHHHHhhhheeeecccccCCCCchHHHHHHhhcc-cccccccCcceE
Confidence 33455555677889999999999993 4566666553 356678999976
No 149
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=62.99 E-value=10 Score=25.67 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=42.6
Q ss_pred Ce-EEEEEeecCCCC-------------CCCChHHHHHhhhCCCCccEEEEcCCCCC--H-HHHHHHhhhCCcEEE---e
Q 029629 1 MV-LVLAIGDLHIPH-------------RASDLPQKFKSMLVPGKIQHIICTGNLSI--K-EVHDYLKSLCPDLHV---T 60 (190)
Q Consensus 1 Mm-ri~~iSD~H~~~-------------~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--~-~~~~~l~~l~~~~~~---v 60 (190)
|| ||++++|.-.-. ...+..+.+.+.+.+.++-.|+++=++.+ + +..+.+++...|.+. +
T Consensus 1 m~~kIaVvGd~DtilGFrlaGi~~v~~~~~~e~~~~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~~~~~P~II~Ipi 80 (104)
T PRK01189 1 MMSCITVIGERDVVLGFRLLGIGDTIEAEGKDLVKKFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLESSSKPLVVFIPL 80 (104)
T ss_pred CCceEEEEcCHHHHHHHHHcCCceEEEcCCHHHHHHHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHhccCCCeEEEEeC
Confidence 54 588888754310 11122345555566788999999998887 3 566777765567666 8
Q ss_pred ccCCC
Q 029629 61 RGEYD 65 (190)
Q Consensus 61 ~GNHD 65 (190)
||+.+
T Consensus 81 pg~~~ 85 (104)
T PRK01189 81 PGISE 85 (104)
T ss_pred CCCcc
Confidence 88776
No 150
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=59.12 E-value=20 Score=26.20 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=26.5
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecc
Q 029629 29 PGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRG 62 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
..+||+||..+-....+..+.|++++.|++++..
T Consensus 67 ~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 67 ALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred ccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 4789999986654444588899999889988864
No 151
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=58.42 E-value=22 Score=27.15 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=27.4
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029629 29 PGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
..+||+|+..+........+.|++++.|++.+.
T Consensus 56 ~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~ 88 (235)
T cd01149 56 SLKPTLVIASDEAGPPEALDQLRAAGVPVVTVP 88 (235)
T ss_pred ccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEec
Confidence 578999999887776778899999988888775
No 152
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=57.82 E-value=46 Score=23.69 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=19.7
Q ss_pred CeEEEEEeecCCCCCCCChHHHHHhhhCCCCccE
Q 029629 1 MVLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQH 34 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~ 34 (190)
|||++++..++.+ +.+...+.+.+.++....+.
T Consensus 1 M~ki~Ivy~S~tG-nTe~vA~~i~~~l~~~~~~~ 33 (151)
T COG0716 1 MMKILIVYGSRTG-NTEKVAEIIAEELGADGFEV 33 (151)
T ss_pred CCeEEEEEEcCCC-cHHHHHHHHHHHhccCCceE
Confidence 9999999999874 22333444444444333333
No 153
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=53.90 E-value=90 Score=26.38 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=50.5
Q ss_pred cEEEEcCCCCC-HHHHHHHhhhCCcEEEeccCCCC--CCCCCcceEEEeCCEEEEEeeCCccCCC---------------
Q 029629 33 QHIICTGNLSI-KEVHDYLKSLCPDLHVTRGEYDE--DSRYPETKTLTIGQFKLGICHGHQVIPW--------------- 94 (190)
Q Consensus 33 D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~--~~~~p~~~~~~~~~~~i~~~Hg~~~~~~--------------- 94 (190)
.-|+.+|+|+. +.+.+.|++.+ +.++.+.... ...+| -++.-|+=.||-+....
T Consensus 69 ~~vytlG~IIHNp~Vv~~L~~~G--v~~v~~~~~~~~~~~v~------~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATC 140 (387)
T PRK13371 69 ERIWITNEIIHNPSVNQHLREMG--VRFIPVEKGVKDFSVVT------PGDVVILPAFGATVQEMQLLNEKGCHIVDTTC 140 (387)
T ss_pred CCeEEecCCcCCHHHHHHHHhCC--CEEEcCcCcccchhcCC------CCCEEEEeCCCCCHHHHHHHHHCCCeEEecCC
Confidence 57999999997 78999999876 4666542211 11222 14455666787553110
Q ss_pred CCHHHH---HHHhhccCccEEEeCCCCCcceEE
Q 029629 95 GDLDSL---AMLQRQLDVDILVTGHTHQFKAYK 124 (190)
Q Consensus 95 ~~~~~~---~~~~~~~~~~~vi~GHtH~~~~~~ 124 (190)
...... .....+.++.+++.|+.-+|.+.-
T Consensus 141 P~V~kvh~~v~~~~~~Gy~iIIiG~~~HpEV~G 173 (387)
T PRK13371 141 PWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRA 173 (387)
T ss_pred ccchHHHHHHHHHHhCCCEEEEEcCCCCcceee
Confidence 011112 222235689999999988887643
No 154
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=52.43 E-value=54 Score=25.44 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=34.8
Q ss_pred CeEEEEEeecCCCCCC--CCh----HHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCC
Q 029629 1 MVLVLAIGDLHIPHRA--SDL----PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCP 55 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~--~~~----~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~ 55 (190)
||.=++++|+-+..-. ... .+++.+ +++.++.+++.+|=-. ..+...+++++.
T Consensus 1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~-~~~~g~~v~iaTGR~~-~~~~~~~~~l~~ 59 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKTISPETKEALAR-LREKGVKVVLATGRPL-PDVLSILEELGL 59 (264)
T ss_pred CCeeEEEEcCCCCccCCCCccCHHHHHHHHH-HHHCCCEEEEECCCCh-HHHHHHHHHcCC
Confidence 7778899999983211 112 233332 3468899999999877 566677777663
No 155
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=51.05 E-value=65 Score=28.76 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=55.0
Q ss_pred ccEEEEcCCCC-C-----HHHHHHHhhhCC-cE-EEeccCCCCCCCCCcceE--EEeCCEEEEEeeCCccCCCCCHHHHH
Q 029629 32 IQHIICTGNLS-I-----KEVHDYLKSLCP-DL-HVTRGEYDEDSRYPETKT--LTIGQFKLGICHGHQVIPWGDLDSLA 101 (190)
Q Consensus 32 ~D~vi~~GDl~-~-----~~~~~~l~~l~~-~~-~~v~GNHD~~~~~p~~~~--~~~~~~~i~~~Hg~~~~~~~~~~~~~ 101 (190)
-+.|++.||.= | .-.+..|++++. .+ +++|---...-++....+ +...+.+++++=.-.. +.....
T Consensus 69 ~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~LiItvD~Gi----~~~e~i 144 (575)
T PRK11070 69 GTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI----SSHAGV 144 (575)
T ss_pred CCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCEEEEEcCCc----CCHHHH
Confidence 36889999984 3 123566777765 23 666643222212221111 1113444555542211 122233
Q ss_pred HHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccCC
Q 029629 102 MLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGA 139 (190)
Q Consensus 102 ~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~~ 139 (190)
+.+++.+.++++.-| |.+....-.-..+|||--.++.
T Consensus 145 ~~a~~~gidvIVtDH-H~~~~~~P~a~a~iNP~~~~~~ 181 (575)
T PRK11070 145 AHAHALGIPVLVTDH-HLPGETLPAADAIINPNLRDCN 181 (575)
T ss_pred HHHHHCCCCEEEECC-CCCCCCCCCCeEEECCCCcCCC
Confidence 456778999999999 6654432223468898776654
No 156
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=49.95 E-value=1.2e+02 Score=26.18 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=50.0
Q ss_pred cEEEEcCCCCC-HHHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEeeCCccCCC---------------CC
Q 029629 33 QHIICTGNLSI-KEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPW---------------GD 96 (190)
Q Consensus 33 D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~---------------~~ 96 (190)
..|+++|.|+. +.+.+.|++.+ +.+|...... ..+. .+.-++.-|+=.||-..... ..
T Consensus 137 ~~Iy~lgeIIHNp~Vv~~L~~~G--V~~I~~~~~~-~~~~---~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~ 210 (460)
T PLN02821 137 EKLWITNEIIHNPTVNKRLEEMN--VQFIEVEEGG-KDFS---VVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPW 210 (460)
T ss_pred CCeEEecCCccCHHHHHHHHHCC--CEEecccccc-cccc---cCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcc
Confidence 67999999997 78999999987 4555532211 0111 11224455666787553110 01
Q ss_pred HHHH---HHHhhccCccEEEeCCCCCcceE
Q 029629 97 LDSL---AMLQRQLDVDILVTGHTHQFKAY 123 (190)
Q Consensus 97 ~~~~---~~~~~~~~~~~vi~GHtH~~~~~ 123 (190)
.... .+...+.++..+++|+.-++...
T Consensus 211 V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~ 240 (460)
T PLN02821 211 VSKVWNTVEKHKKKDYTSVIHGKYAHEETV 240 (460)
T ss_pred hHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence 1122 22233568999999998887764
No 157
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=49.88 E-value=91 Score=28.21 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=50.3
Q ss_pred ccEEEEcCCCCC-HHHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEeeCCccCCC---------------C
Q 029629 32 IQHIICTGNLSI-KEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPW---------------G 95 (190)
Q Consensus 32 ~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~---------------~ 95 (190)
..-|+.+|+|+. +.+.+.|++.+. .++. ....+|. ++.-|+=.||-+.... .
T Consensus 30 ~~~i~~lg~ivHN~~vv~~l~~~Gv--~~v~----~~~~~~~------~~~vii~aHG~~~~~~~~~~~~~~~viDaTCP 97 (647)
T PRK00087 30 KGKIYTLGPLIHNNQVVEKLKKKGI--KPIE----DIDELNE------GDTIIIRSHGVPPEVLEELKDKGLKVIDATCP 97 (647)
T ss_pred CCCEEEeCCCcCCHHHHHHHHHCCC--EEeC----CHhhCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEECCCc
Confidence 467999999997 789999999874 4442 2223332 3455666787553110 0
Q ss_pred CHHH---HHHHhhccCccEEEeCCCCCcceEEE
Q 029629 96 DLDS---LAMLQRQLDVDILVTGHTHQFKAYKH 125 (190)
Q Consensus 96 ~~~~---~~~~~~~~~~~~vi~GHtH~~~~~~~ 125 (190)
.... ......+.++.+++.|+-.+|.+...
T Consensus 98 ~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~ 130 (647)
T PRK00087 98 FVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGI 130 (647)
T ss_pred CchHHHHHHHHHHhCCCEEEEEeCCCCCeeeee
Confidence 0111 12222356899999999988887543
No 158
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=49.06 E-value=57 Score=26.78 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=49.7
Q ss_pred CCCccEEEEcCCCCC--HHHHHHHhhhCCcEEEeccCCCCCC------CCCcceEEEeCCEEEEEeeCCccCCCCCHHHH
Q 029629 29 PGKIQHIICTGNLSI--KEVHDYLKSLCPDLHVTRGEYDEDS------RYPETKTLTIGQFKLGICHGHQVIPWGDLDSL 100 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~--~~~~~~l~~l~~~~~~v~GNHD~~~------~~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~~ 100 (190)
+.+||.|++.|-=.. +..-..|++++.++.-+-|+.-... .+.+...--+++.+++++||..+ ...+
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy-----~~~~ 147 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDY-----ADAL 147 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEecccc-----HHHH
Confidence 467888888776543 4555678888877777777754432 01111222346689999999775 3366
Q ss_pred HHHhhccCccEEEe
Q 029629 101 AMLQRQLDVDILVT 114 (190)
Q Consensus 101 ~~~~~~~~~~~vi~ 114 (190)
.++++. ++--++.
T Consensus 148 ~e~~k~-~~~p~~~ 160 (337)
T COG2247 148 MELMKE-GIVPVIL 160 (337)
T ss_pred HHHHhc-CcceeEe
Confidence 777766 5554443
No 159
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=48.78 E-value=26 Score=27.86 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=24.2
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLS 42 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~ 42 (190)
.+|++.||+.+.... +.+. ++.+..||.+++.|=..
T Consensus 177 ~~i~faSDvqGp~~~----~~l~-~i~e~~P~v~ii~GPpt 212 (304)
T COG2248 177 SSIVFASDVQGPIND----EALE-FILEKRPDVLIIGGPPT 212 (304)
T ss_pred eEEEEcccccCCCcc----HHHH-HHHhcCCCEEEecCCch
Confidence 368999999975322 2222 23346899999999765
No 160
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=48.67 E-value=68 Score=20.74 Aligned_cols=39 Identities=5% Similarity=0.085 Sum_probs=26.1
Q ss_pred HHHhhhCCCCccEEEEcCCCCCHHHHHHH----hhhCCcEEEec
Q 029629 22 KFKSMLVPGKIQHIICTGNLSIKEVHDYL----KSLCPDLHVTR 61 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l----~~l~~~~~~v~ 61 (190)
...+.+++.....+++++|.-.. +...+ ++.+.|+.+|+
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~-vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVY-LMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEEC
Confidence 34455667889999999998753 33333 33457888876
No 161
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=47.52 E-value=30 Score=27.14 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=12.7
Q ss_pred hCCcEEEeccCCCCCC
Q 029629 53 LCPDLHVTRGEYDEDS 68 (190)
Q Consensus 53 l~~~~~~v~GNHD~~~ 68 (190)
+...++++.|||+...
T Consensus 126 inknvvvlagnhein~ 141 (318)
T PF13258_consen 126 INKNVVVLAGNHEINF 141 (318)
T ss_pred cccceEEEecCceecc
Confidence 3467999999999763
No 162
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=46.34 E-value=48 Score=24.90 Aligned_cols=30 Identities=7% Similarity=-0.172 Sum_probs=22.0
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEE
Q 029629 29 PGKIQHIICTGNLSIKEVHDYLKSLCPDLH 58 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~ 58 (190)
...||+|+++.--.+..++....+++.|++
T Consensus 125 ~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I 154 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVI 154 (193)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEE
Confidence 457999999987666666777777666654
No 163
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=46.33 E-value=1.2e+02 Score=24.76 Aligned_cols=69 Identities=12% Similarity=0.206 Sum_probs=45.7
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCCCCCCCCC-------------cceEEEeCCEEEEEee
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYP-------------ETKTLTIGQFKLGICH 87 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~~~p-------------~~~~~~~~~~~i~~~H 87 (190)
+.+.+.+....+|-+|++|-..+....+.+.+...|++.+-...+ ....+ -..+++.+..+|.++.
T Consensus 104 ~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~~~~~-~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~ 182 (333)
T COG1609 104 REYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVIDRSPP-GLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIG 182 (333)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCEEEEeCCCc-cCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEe
Confidence 344444556889999999944446677888888888888876544 22222 1334455678898888
Q ss_pred CCc
Q 029629 88 GHQ 90 (190)
Q Consensus 88 g~~ 90 (190)
|..
T Consensus 183 ~~~ 185 (333)
T COG1609 183 GPL 185 (333)
T ss_pred CCC
Confidence 875
No 164
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=45.30 E-value=17 Score=29.96 Aligned_cols=43 Identities=9% Similarity=0.027 Sum_probs=24.2
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHHHh-hhCCcEEEeccC
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDYLK-SLCPDLHVTRGE 63 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~-~l~~~~~~v~GN 63 (190)
..+.+++++.+||+|+..||-...-+..... .+..|+.-+.|=
T Consensus 57 ~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 57 IELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 3555566678999999999977632212211 234677766543
No 165
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=45.19 E-value=54 Score=25.21 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029629 22 KFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
.+.+.+...++|.|++.+...+...++.+.+.+.|++++-
T Consensus 55 ~~~~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~ 94 (275)
T cd06295 55 WLARYLASGRADGVILIGQHDQDPLPERLAETGLPFVVWG 94 (275)
T ss_pred HHHHHHHhCCCCEEEEeCCCCChHHHHHHHhCCCCEEEEC
Confidence 4444444578999998876555566777777778888773
No 166
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.59 E-value=69 Score=21.53 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=23.6
Q ss_pred HHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCCCC
Q 029629 22 KFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDE 66 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~ 66 (190)
.+..+++..+.+.+..-.++-.++..+.+.+..+.++.+......
T Consensus 18 ~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~ 62 (119)
T cd02067 18 IVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTT 62 (119)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 334444456666654444433345556666665556666555433
No 167
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.84 E-value=58 Score=25.70 Aligned_cols=36 Identities=8% Similarity=-0.092 Sum_probs=23.8
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhCCcEEE-eccCCCC
Q 029629 31 KIQHIICTGNLSIKEVHDYLKSLCPDLHV-TRGEYDE 66 (190)
Q Consensus 31 ~~D~vi~~GDl~~~~~~~~l~~l~~~~~~-v~GNHD~ 66 (190)
-||++++.-=-.+..+...-++++.|+++ |-=|+|.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 39999987655556666777778877754 3344443
No 168
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=43.47 E-value=69 Score=24.82 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=31.8
Q ss_pred hCCCCccEEEEcCCC-CC----HHHHHHHhhhCCcEEEeccCCCCCC
Q 029629 27 LVPGKIQHIICTGNL-SI----KEVHDYLKSLCPDLHVTRGEYDEDS 68 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl-~~----~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
+.+...|.|++.|=. +. .++++.+++...|++.-|||++...
T Consensus 23 ~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~ 69 (223)
T TIGR01768 23 AAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVS 69 (223)
T ss_pred HHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccC
Confidence 335789999999976 44 2456677776689999999999753
No 169
>PF10957 DUF2758: Protein of unknown function (DUF2758); InterPro: IPR020296 Cse60 is expressed during sporulation in Bacillus subtilis. Transcription commences around 2h after the start of sporulation and had an absolute requirement for the transcription factor sigmaE. Maximal expression of cse60 further depended on the DNA-binding protein SpoIIID. Cse60 is an acidic product of only 60 residues, whose function is not known [].
Probab=43.16 E-value=26 Score=21.14 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=18.4
Q ss_pred CeEEEEEeecCCCCCCCChHHHHHhhhCC
Q 029629 1 MVLVLAIGDLHIPHRASDLPQKFKSMLVP 29 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~~~~~~~l~~~~~~ 29 (190)
|||+-++...|. .++.+++.+++++
T Consensus 1 MikVKvFd~~he----~dLe~~vN~fL~~ 25 (60)
T PF10957_consen 1 MIKVKVFDEEHE----KDLEDQVNDFLAK 25 (60)
T ss_pred CcEEEEEehhhH----HHHHHHHHHHHHh
Confidence 899999999995 3566666666543
No 170
>COG2923 DsrF Uncharacterized protein involved in the oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=42.80 E-value=32 Score=23.77 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=20.5
Q ss_pred CeEEEEEeecCCCCCCCChHHHHHhh---hCCCCccEEEEcCC
Q 029629 1 MVLVLAIGDLHIPHRASDLPQKFKSM---LVPGKIQHIICTGN 40 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~~~~~~~l~~~---~~~~~~D~vi~~GD 40 (190)
|||++++.+.= +++...-.+.+..+ .....+--|++.||
T Consensus 1 mk~~afvf~~a-P~Gs~~~rEgLda~la~~a~~~~~~vffi~D 42 (118)
T COG2923 1 MKKLAFVFRTA-PHGSEAGREGLDAALATSAFSLETGVFFIGD 42 (118)
T ss_pred CceEEEEEecC-CCccHHHHhHHHHHHHHhhcccccceEEEcc
Confidence 89999999873 12222222222222 22233335777788
No 171
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=41.40 E-value=54 Score=24.87 Aligned_cols=38 Identities=5% Similarity=-0.043 Sum_probs=25.6
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcE--------------EEeccCCCCC
Q 029629 30 GKIQHIICTGNLSIKEVHDYLKSLCPDL--------------HVTRGEYDED 67 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~--------------~~v~GNHD~~ 67 (190)
..||++++++=..+..+...-++++.|+ |.+|||.|..
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~ 158 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGR 158 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchH
Confidence 4589999986555556666666666665 5667777754
No 172
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=40.80 E-value=48 Score=27.47 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=27.6
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHH-HhhhCCcEE-EeccCC
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDY-LKSLCPDLH-VTRGEY 64 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~-l~~l~~~~~-~v~GNH 64 (190)
..+.+++++.+||.|+..||-...-.... -..++.|+. +-.|++
T Consensus 83 ~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~r 128 (365)
T TIGR03568 83 IGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEV 128 (365)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCcc
Confidence 35556667889999999999766211111 122346777 556666
No 173
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=40.58 E-value=82 Score=20.20 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=26.9
Q ss_pred hhhCCCCccEEEEcCCCCC---HHHHHHHhhhC--CcEEEeccCCC
Q 029629 25 SMLVPGKIQHIICTGNLSI---KEVHDYLKSLC--PDLHVTRGEYD 65 (190)
Q Consensus 25 ~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~--~~~~~v~GNHD 65 (190)
+.+++..||.+++-.++.+ .++++.+++.. .|++++-.+.|
T Consensus 37 ~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred HHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCC
Confidence 3344567999998877776 35666666654 46666666655
No 174
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=40.52 E-value=26 Score=24.99 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=23.3
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCH----HHHHHHhhhCCcEEEec
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIK----EVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~----~~~~~l~~l~~~~~~v~ 61 (190)
+.+.+.+++.++|.|+++=+..+. +.++.+++.+..+.++|
T Consensus 131 ~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 131 DDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp GGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE--
T ss_pred HHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEEeC
Confidence 455666667889999999887763 55666667667777765
No 175
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=40.29 E-value=92 Score=23.78 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=30.3
Q ss_pred hCCCCccEEEEcCCC-CC----HHHHHHHhhh-CCcEEEeccCCCCCC
Q 029629 27 LVPGKIQHIICTGNL-SI----KEVHDYLKSL-CPDLHVTRGEYDEDS 68 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl-~~----~~~~~~l~~l-~~~~~~v~GNHD~~~ 68 (190)
+.+.+.|.+++.|=. ++ .++++.+++. ..|++.-|||++...
T Consensus 20 v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 20 AKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLS 67 (205)
T ss_pred HHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccC
Confidence 345679999998864 34 2455667763 469999999999753
No 176
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=38.46 E-value=18 Score=31.29 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=17.7
Q ss_pred HHHHHHHhhccCcc--EEEeCCCCCcc
Q 029629 97 LDSLAMLQRQLDVD--ILVTGHTHQFK 121 (190)
Q Consensus 97 ~~~~~~~~~~~~~~--~vi~GHtH~~~ 121 (190)
.+++..+++..++. +++.|-+|...
T Consensus 393 RerLl~fi~~~~~~N~V~LtgDvH~~w 419 (522)
T COG3540 393 RERLLRFIADRKIRNTVVLTGDVHYSW 419 (522)
T ss_pred HHHHHHHHHhcCCCCcEEEechhHHHH
Confidence 45666666665555 89999999754
No 177
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=37.87 E-value=1e+02 Score=24.06 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=31.5
Q ss_pred hCCCCccEEEEcCCC-CC----HHHHHHHhhhCCcEEEeccCCCCCC
Q 029629 27 LVPGKIQHIICTGNL-SI----KEVHDYLKSLCPDLHVTRGEYDEDS 68 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl-~~----~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
+.+...|.|++.|=. +. .++++.+++...|++.-|||++...
T Consensus 28 ~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~ 74 (232)
T PRK04169 28 ICESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIEGIS 74 (232)
T ss_pred HHhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCccccC
Confidence 335789999999976 44 3456677775579999999999753
No 178
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=37.50 E-value=1.8e+02 Score=22.97 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=39.4
Q ss_pred EEEEEeecCCCCCC----CChHHHHHhhhCCCCccEEEEcCCCCC----HHHHHHHhhhC-CcEEEecc
Q 029629 3 LVLAIGDLHIPHRA----SDLPQKFKSMLVPGKIQHIICTGNLSI----KEVHDYLKSLC-PDLHVTRG 62 (190)
Q Consensus 3 ri~~iSD~H~~~~~----~~~~~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~-~~~~~v~G 62 (190)
++-+++|+|..+.. ..+.+.+.+.+++..+|.|+++|=-.. .+.++..++.. .|+++=.|
T Consensus 145 ~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlvGSG 213 (263)
T COG0434 145 RVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVGSG 213 (263)
T ss_pred CcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEEEecC
Confidence 46789999985322 255666777677788999999997765 35555555543 34554444
No 179
>PLN00416 carbonate dehydratase
Probab=36.90 E-value=89 Score=24.81 Aligned_cols=73 Identities=18% Similarity=0.121 Sum_probs=35.6
Q ss_pred HHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEee--CCccCCC------CCHHHHHHHhhccCcc-EEEeCCCC
Q 029629 48 DYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICH--GHQVIPW------GDLDSLAMLQRQLDVD-ILVTGHTH 118 (190)
Q Consensus 48 ~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~H--g~~~~~~------~~~~~~~~~~~~~~~~-~vi~GHtH 118 (190)
+.+.+-..|...+.|--|.. .|...++..+--.+++.- |....+. .....++.-....++. +++|||++
T Consensus 72 ~~la~gQ~P~alvI~CsDSR--V~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~ 149 (258)
T PLN00416 72 NHLAKTQTPKFLVFACSDSR--VCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSC 149 (258)
T ss_pred HhhccCCCCCEEEEEecCCC--CCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCC
Confidence 33333335788888888874 343333333222222222 2222221 1112333333344554 89999998
Q ss_pred Ccce
Q 029629 119 QFKA 122 (190)
Q Consensus 119 ~~~~ 122 (190)
-..+
T Consensus 150 CGaV 153 (258)
T PLN00416 150 CGGI 153 (258)
T ss_pred chHH
Confidence 7653
No 180
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=36.85 E-value=72 Score=24.36 Aligned_cols=27 Identities=4% Similarity=-0.093 Sum_probs=19.0
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhCCcE
Q 029629 31 KIQHIICTGNLSIKEVHDYLKSLCPDL 57 (190)
Q Consensus 31 ~~D~vi~~GDl~~~~~~~~l~~l~~~~ 57 (190)
.||+++++.=..+..+...-++++.|+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~ 140 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPV 140 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCE
Confidence 688888887666666666666666555
No 181
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.82 E-value=28 Score=25.56 Aligned_cols=71 Identities=7% Similarity=-0.006 Sum_probs=35.5
Q ss_pred HHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCC
Q 029629 45 EVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 116 (190)
Q Consensus 45 ~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GH 116 (190)
.+++...+-..+++++-|.-+.....-........+.+|+..|..+. .....+.+.+.+...++|+++.|=
T Consensus 39 ~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 39 DLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-DEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-ChhhHHHHHHHHHHcCCCEEEEEC
Confidence 33444444444566666665543222122222334667776664443 112234445555677888887764
No 182
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=36.40 E-value=56 Score=24.71 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=13.3
Q ss_pred CCCCccEEEEcCCCCC
Q 029629 28 VPGKIQHIICTGNLSI 43 (190)
Q Consensus 28 ~~~~~D~vi~~GDl~~ 43 (190)
.+.++|+++++||.+-
T Consensus 26 ~~~~~d~~l~~GD~IY 41 (228)
T cd07389 26 SEEDPDLFLHLGDQIY 41 (228)
T ss_pred cccCCCEEEEcCCeec
Confidence 3688999999999763
No 183
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=33.32 E-value=26 Score=30.23 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=27.7
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCC----CccEEEEcCCCCC---------HHHHHHHhhhCCcEEEecc
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPG----KIQHIICTGNLSI---------KEVHDYLKSLCPDLHVTRG 62 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~----~~D~vi~~GDl~~---------~~~~~~l~~l~~~~~~v~G 62 (190)
+.++-|+... ....+.+.+ +.+++. +--.|.+.||+.+ .++.+.+.+.....+++.|
T Consensus 339 ~~iIDDsYah-nP~s~~aaL-~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~h~~~~~~~~~~~~d~v~~~G 408 (479)
T PRK14093 339 ATLIDESYNA-NPASMAAAL-GVLGRAPVGPQGRRIAVLGDMLELGPRGPELHRGLAEAIRANAIDLVFCCG 408 (479)
T ss_pred EEEEECCCCC-CHHHHHHHH-HHHHhhhccCCCCEEEEECChHHcCcHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 4667776542 222333333 333222 2257888898755 2344444433334555556
No 184
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=33.06 E-value=85 Score=24.49 Aligned_cols=33 Identities=15% Similarity=-0.019 Sum_probs=25.2
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029629 29 PGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
..+||+|+........+.++.|++++.|++.+.
T Consensus 70 ~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~ 102 (260)
T PRK03379 70 ALKPDLVLAWRGGNAERQVDQLASLGIKVMWVD 102 (260)
T ss_pred hcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeC
Confidence 478999987654334567889999988888874
No 185
>PLN02154 carbonic anhydrase
Probab=33.03 E-value=1.3e+02 Score=24.45 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=35.1
Q ss_pred CCcEEEeccCCCCCCCCCcceEEEeCCEEEEEee--CCccCCC-----CCHHHHHHHhhccCcc-EEEeCCCCCcce
Q 029629 54 CPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICH--GHQVIPW-----GDLDSLAMLQRQLDVD-ILVTGHTHQFKA 122 (190)
Q Consensus 54 ~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~H--g~~~~~~-----~~~~~~~~~~~~~~~~-~vi~GHtH~~~~ 122 (190)
..|.+++.|--|. ..|.+.++..+--.+++.. |....+. .....++......++. ++++||++-..+
T Consensus 105 Q~P~~lvi~C~DS--RV~pe~if~~~pGdlFvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV 179 (290)
T PLN02154 105 QSPKVMVIGCADS--RVCPSYVLGFQPGEAFTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCGGI 179 (290)
T ss_pred CCCCEEEEEecCC--CCCHHHHcCCCCCCEEEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCchHH
Confidence 3588888888887 4444444443333344433 2222211 1122333333444554 899999986553
No 186
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=32.86 E-value=87 Score=24.78 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=24.8
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029629 29 PGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
..+||+||..+. ...+..+.|++++.|++++.
T Consensus 89 al~PDlIi~~~~-~~~~~~~~l~~~gi~v~~~~ 120 (289)
T TIGR03659 89 SLKPTVVLSVTT-LEEDLGPKFKQLGVEATFLN 120 (289)
T ss_pred ccCCcEEEEcCc-ccHHHHHHHHHcCCcEEEEc
Confidence 478999998765 45567889999888887763
No 187
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=32.84 E-value=2.3e+02 Score=22.47 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=36.4
Q ss_pred EEEEeecCCCCCC----CChHHHHHhhhCCCCccEEEEcCCCCC----HHHHHHHhhhC-CcEEEecc
Q 029629 4 VLAIGDLHIPHRA----SDLPQKFKSMLVPGKIQHIICTGNLSI----KEVHDYLKSLC-PDLHVTRG 62 (190)
Q Consensus 4 i~~iSD~H~~~~~----~~~~~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~-~~~~~v~G 62 (190)
+.+++|+|..+.. ..+.+.+...+....+|.|+.+|.-+. .+.++.+++.. .|+++=.|
T Consensus 141 v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSG 208 (254)
T PF03437_consen 141 VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSG 208 (254)
T ss_pred eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecC
Confidence 6788899874321 234455555545678999999999875 34555555543 35554333
No 188
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=32.43 E-value=88 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=23.8
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecc
Q 029629 29 PGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRG 62 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
+.+||+|+..+.. ..+..+.|+++++|++.+.-
T Consensus 58 ~l~PDlii~~~~~-~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 58 ALKPDLVIVSSSS-LAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred ccCCCEEEEcCCc-CHHHHHHHHHcCCcEEEeCC
Confidence 4689999886543 34577888888888877753
No 189
>PRK09982 universal stress protein UspD; Provisional
Probab=32.15 E-value=48 Score=23.08 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=18.0
Q ss_pred HHHHHHHhhccCccEEEeCCCCC
Q 029629 97 LDSLAMLQRQLDVDILVTGHTHQ 119 (190)
Q Consensus 97 ~~~~~~~~~~~~~~~vi~GHtH~ 119 (190)
.+.+.+.+++.++|+++.|| |.
T Consensus 92 ~~~I~~~A~~~~aDLIVmG~-~~ 113 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCGH-HH 113 (142)
T ss_pred HHHHHHHHHHcCCCEEEEeC-Ch
Confidence 45677788899999999997 64
No 190
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=32.00 E-value=93 Score=25.63 Aligned_cols=38 Identities=11% Similarity=-0.013 Sum_probs=26.3
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcE--------------EEeccCCCCC
Q 029629 30 GKIQHIICTGNLSIKEVHDYLKSLCPDL--------------HVTRGEYDED 67 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~--------------~~v~GNHD~~ 67 (190)
..||+||+++=.-+..++..-.+++.|+ |.||||.|..
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~ 202 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAG 202 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchH
Confidence 3699999988666666666666666555 5567776654
No 191
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=31.76 E-value=1.3e+02 Score=25.06 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.7
Q ss_pred CeEEEEEeecCC
Q 029629 1 MVLVLAIGDLHI 12 (190)
Q Consensus 1 Mmri~~iSD~H~ 12 (190)
|||++++-|..+
T Consensus 1 ~irVlvVddsal 12 (350)
T COG2201 1 KIRVLVVDDSAL 12 (350)
T ss_pred CcEEEEEcCcHH
Confidence 799999999886
No 192
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=31.61 E-value=92 Score=25.40 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=25.5
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHHH-hhhCCcEEEec
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDYL-KSLCPDLHVTR 61 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l-~~l~~~~~~v~ 61 (190)
..+.+++++.+||.|+..||....-..... +.++.|++.+.
T Consensus 76 ~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~ 117 (365)
T TIGR00236 76 EGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVE 117 (365)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEe
Confidence 356666778899999999997542111122 23456777663
No 193
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=31.52 E-value=91 Score=26.30 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=18.9
Q ss_pred HHHHhhhCCCCccEEEEcCCCCC
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSI 43 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~ 43 (190)
..+.+++.+++||.|++-||-..
T Consensus 82 ~~~~~vl~~~kPD~VlVhGDT~t 104 (383)
T COG0381 82 EGLSKVLEEEKPDLVLVHGDTNT 104 (383)
T ss_pred HHHHHHHHhhCCCEEEEeCCcch
Confidence 45666677899999999999876
No 194
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=31.42 E-value=92 Score=23.75 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=29.9
Q ss_pred ChHHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhh-hCCcEEEe
Q 029629 18 DLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKS-LCPDLHVT 60 (190)
Q Consensus 18 ~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~-l~~~~~~v 60 (190)
.+.+++.+.++ .+...-+++||+...+-.++|.+ .+.|++-+
T Consensus 28 aLie~~~~~L~-~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v 70 (202)
T COG0378 28 ALIEKTLRALK-DEYKIAVITGDIYTKEDADRLRKLPGEPIIGV 70 (202)
T ss_pred HHHHHHHHHHH-hhCCeEEEeceeechhhHHHHHhCCCCeeEEe
Confidence 34555444453 44899999999999877888888 66666543
No 195
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=30.96 E-value=1e+02 Score=24.84 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=25.2
Q ss_pred HHHhhhCCCCccEEEEcCCCCCHH-HHHHHhhhCCcEEEeccC
Q 029629 22 KFKSMLVPGKIQHIICTGNLSIKE-VHDYLKSLCPDLHVTRGE 63 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~-~~~~l~~l~~~~~~v~GN 63 (190)
.+.+.+.+.+||.|+..||....- ....-+..+.|++.+.|+
T Consensus 79 ~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g 121 (363)
T cd03786 79 GLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAG 121 (363)
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecc
Confidence 344445567899999999864421 111222235688877654
No 196
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.45 E-value=47 Score=24.06 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=20.6
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHHHhh
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDYLKS 52 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~ 52 (190)
+.+.+.+++.+||+||++==+...-.+..|++
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~ 110 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLSRLKR 110 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHHHHHH
Confidence 45667777899999999754333221555544
No 197
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=30.12 E-value=1.2e+02 Score=23.48 Aligned_cols=29 Identities=7% Similarity=-0.106 Sum_probs=20.0
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcEE
Q 029629 30 GKIQHIICTGNLSIKEVHDYLKSLCPDLH 58 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~~ 58 (190)
..||+|++++=--+..++..-.+++.|++
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I 182 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVV 182 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEE
Confidence 46999999886555555666666666654
No 198
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=29.96 E-value=62 Score=23.50 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=30.3
Q ss_pred HhhhCCCCccEEEEcCCCCCH----HHHHHHhhhCCcEEEeccCCCC
Q 029629 24 KSMLVPGKIQHIICTGNLSIK----EVHDYLKSLCPDLHVTRGEYDE 66 (190)
Q Consensus 24 ~~~~~~~~~D~vi~~GDl~~~----~~~~~l~~l~~~~~~v~GNHD~ 66 (190)
.+.+...++|.+++.-|-... ....++.+++.|++++.=-.|.
T Consensus 71 ~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~ 117 (156)
T PF02421_consen 71 RDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDE 117 (156)
T ss_dssp HHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHH
T ss_pred HHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHH
Confidence 333445789999999998872 3455666777888887655554
No 199
>CHL00067 rps2 ribosomal protein S2
Probab=29.64 E-value=1.1e+02 Score=23.84 Aligned_cols=29 Identities=7% Similarity=-0.175 Sum_probs=20.5
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcEE
Q 029629 30 GKIQHIICTGNLSIKEVHDYLKSLCPDLH 58 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~~ 58 (190)
..||+|++++=--+..++..-.+++.|++
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvI 188 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTI 188 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEE
Confidence 46999999886666666666666666654
No 200
>PRK06932 glycerate dehydrogenase; Provisional
Probab=29.59 E-value=1.6e+02 Score=23.90 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=13.8
Q ss_pred CCccEEEEcCCCCCHHHHHHHhh
Q 029629 30 GKIQHIICTGNLSIKEVHDYLKS 52 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~ 52 (190)
.+.|.++...+-++.+.++.+.+
T Consensus 43 ~~~d~ii~~~~~~~~~~l~~~~~ 65 (314)
T PRK06932 43 KDADIVITSKVLFTRETLAQLPK 65 (314)
T ss_pred CCCcEEEEeCCCCCHHHHhhCcC
Confidence 45787766555566665555444
No 201
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=29.52 E-value=1.7e+02 Score=19.71 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=34.5
Q ss_pred CeEEEEEeecCCCC-------------CCCC-hHHHHHhhhCCCCccEEEEcCCCCC--HHHHHHHhhhC-Cc-EEEecc
Q 029629 1 MVLVLAIGDLHIPH-------------RASD-LPQKFKSMLVPGKIQHIICTGNLSI--KEVHDYLKSLC-PD-LHVTRG 62 (190)
Q Consensus 1 Mmri~~iSD~H~~~-------------~~~~-~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~-~~-~~~v~G 62 (190)
||++++++|=-.-. ..++ ..+.+.+.+.+.++..|+++=|+.. ++..+...+.+ .| ++.+|+
T Consensus 2 ~~~I~VIGd~dtvtGFrLaGv~~~~v~~~~~~~~~~~~~~l~~~~~~iIiite~~a~~i~~~i~~~~~~~~~P~iv~IPs 81 (104)
T COG1436 2 MMKIAVIGDRDTVTGFRLAGVRVVYVADDEEDELRAALRVLAEDDVGIILITEDLAEKIREEIRRIIRSSVLPAIVEIPS 81 (104)
T ss_pred ceEEEEEEccchhhceeeecceeEEEecChhHHHHHHHHhhccCCceEEEEeHHHHhhhHHHHHHHhhccCccEEEEeCC
Confidence 67888888854311 1111 2233333344559999999999887 23333332211 24 566777
No 202
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=29.32 E-value=1.2e+02 Score=23.44 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCccEEEEcCCC-C--C-HHHHHHHhhhC--CcEEEeccCCCCC
Q 029629 21 QKFKSMLVPGKIQHIICTGNL-S--I-KEVHDYLKSLC--PDLHVTRGEYDED 67 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl-~--~-~~~~~~l~~l~--~~~~~v~GNHD~~ 67 (190)
+.+.++..+...|+|++.|=. + . +++++.+++.. .|++.-|||.+..
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~~~~Pvilfp~~~~~i 67 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRRPVPVILFPSNPEAV 67 (219)
T ss_pred HHHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHhcCCCCEEEeCCCcccc
Confidence 345555545779999999976 4 2 35666777665 6999999999975
No 203
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=29.28 E-value=1.7e+02 Score=19.18 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=28.0
Q ss_pred HHHHHhhhCCCCccEEEEcCCCCCHHHHHHHh-hhCCcEEEeccCC
Q 029629 20 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLK-SLCPDLHVTRGEY 64 (190)
Q Consensus 20 ~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~-~l~~~~~~v~GNH 64 (190)
.+.+.+++.+.+. +++.|-| .+..+.|+ ..+.|++++.+|.
T Consensus 54 ddci~~~~~~~~~-~~VaT~D---~~Lr~~lr~~~GvPvi~l~~~~ 95 (101)
T PF04900_consen 54 DDCILDLAGKNNK-YIVATQD---KELRRRLRKIPGVPVIYLRRNV 95 (101)
T ss_pred HHHHHHHhccCCe-EEEEecC---HHHHHHHhcCCCCCEEEEECCE
Confidence 4566666644444 8888876 55666777 4567999988764
No 204
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=29.22 E-value=1.8e+02 Score=21.57 Aligned_cols=76 Identities=21% Similarity=0.108 Sum_probs=36.7
Q ss_pred HHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEee--CCccCCC--CCHHHHHHHhhccCc-cEEEeCCCCC
Q 029629 45 EVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICH--GHQVIPW--GDLDSLAMLQRQLDV-DILVTGHTHQ 119 (190)
Q Consensus 45 ~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~H--g~~~~~~--~~~~~~~~~~~~~~~-~~vi~GHtH~ 119 (190)
+.++.+.+-..|..++.|--|.. .|.+.++..+--.+++.- |....+. .....++......++ .++++||+.-
T Consensus 14 ~~~~~l~~gQ~P~~~vi~CsDSR--v~pe~if~~~~GdlFViRnaGN~v~~~~~~~~asleyAv~~L~v~~IvV~GHs~C 91 (182)
T cd00883 14 DFFPRLAKGQTPEYLWIGCSDSR--VPENTILGLLPGEVFVHRNIANLVSPTDLNCLSVLQYAVDVLKVKHIIVCGHYGC 91 (182)
T ss_pred HHHHHhhcCCCCCEEEEEecCCC--CCHHHhcCCCCCCEEEEEeeccccCCCCcchhhhHHHHHHhcCCCEEEEecCCCc
Confidence 34445554446788888888874 333333322222222222 2222111 112223322334454 4899999987
Q ss_pred cce
Q 029629 120 FKA 122 (190)
Q Consensus 120 ~~~ 122 (190)
..+
T Consensus 92 Gav 94 (182)
T cd00883 92 GGV 94 (182)
T ss_pred hHH
Confidence 654
No 205
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=29.19 E-value=1.4e+02 Score=24.11 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=42.1
Q ss_pred HHhhhCCCCccEEEE---cCCCCCHHHHHHHhhhC-CcEEEeccCCCCCCC-CCcceEEEeCCEEEEEeeCCcc
Q 029629 23 FKSMLVPGKIQHIIC---TGNLSIKEVHDYLKSLC-PDLHVTRGEYDEDSR-YPETKTLTIGQFKLGICHGHQV 91 (190)
Q Consensus 23 l~~~~~~~~~D~vi~---~GDl~~~~~~~~l~~l~-~~~~~v~GNHD~~~~-~p~~~~~~~~~~~i~~~Hg~~~ 91 (190)
|.+.++.-+||.+|= .|.++.++.++.|.+.. .|+++-.-|-....+ .|+. ..+..+-+.++.-|.|+
T Consensus 97 L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~-a~~~t~G~ai~ATGsPf 169 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAED-AYKWTDGRALFASGSPF 169 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHH-HHHhhcCCEEEEeCCCC
Confidence 333443447888886 35789999999998654 589999999887443 2322 22222223455555554
No 206
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=29.10 E-value=1.2e+02 Score=24.03 Aligned_cols=38 Identities=5% Similarity=-0.131 Sum_probs=26.2
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcE--------------EEeccCCCCC
Q 029629 30 GKIQHIICTGNLSIKEVHDYLKSLCPDL--------------HVTRGEYDED 67 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~--------------~~v~GNHD~~ 67 (190)
..||+||++.=..+...+..-++++.|+ |.||||.|..
T Consensus 117 ~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~ 168 (249)
T PTZ00254 117 MEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGK 168 (249)
T ss_pred CCCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchH
Confidence 4689999987666666666666666554 5667887765
No 207
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=28.74 E-value=33 Score=29.31 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=29.4
Q ss_pred EEEEeecCCCCCCCChHHHHHhhhCCCCccEEEEcCCCCC---------HHHHHHHhhhCCcEEEecc
Q 029629 4 VLAIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSI---------KEVHDYLKSLCPDLHVTRG 62 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~l~~~~~~v~G 62 (190)
+.++=|.+.. ....+ ++..+.+++..--.+++.||+.+ .++.+.+.+.....+++.|
T Consensus 327 ~~iIDDsYn~-nP~s~-~aaL~~l~~~~~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G 392 (453)
T PRK10773 327 QLLLDDSYNA-NVGSM-TAAAQVLAEMPGYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSVG 392 (453)
T ss_pred eEEEEcCCCC-CHHHH-HHHHHHHHhCCCCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4567777753 12233 33333333222246889999987 1334444444444555556
No 208
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=28.62 E-value=1.2e+02 Score=26.22 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=34.7
Q ss_pred CChHHHHHhhhCCCCccEEEEcCCCCC-------HHHHHHHh-hhCCcEEEeccCC
Q 029629 17 SDLPQKFKSMLVPGKIQHIICTGNLSI-------KEVHDYLK-SLCPDLHVTRGEY 64 (190)
Q Consensus 17 ~~~~~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~-~l~~~~~~v~GNH 64 (190)
.++.+.+.+++++.+|++|+..|=++. ..+.+.++ +++.|++.+.+|=
T Consensus 83 ~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~~G 138 (457)
T CHL00073 83 EELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARANG 138 (457)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeCCC
Confidence 355667777777789999999987764 34555565 5678999887653
No 209
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=28.51 E-value=94 Score=24.42 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=48.1
Q ss_pred CCCCccEEEEcCCCCC----HHHHHHHhhhCCcEEEeccCCCCCC---CCCcceEEEeCCEEEEEeeCCccCCCCCHHHH
Q 029629 28 VPGKIQHIICTGNLSI----KEVHDYLKSLCPDLHVTRGEYDEDS---RYPETKTLTIGQFKLGICHGHQVIPWGDLDSL 100 (190)
Q Consensus 28 ~~~~~D~vi~~GDl~~----~~~~~~l~~l~~~~~~v~GNHD~~~---~~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~~ 100 (190)
++-+-=+=+|.||..= .|..+.|++++.|+.+|||=--... .+..+..+.--...++++-.....+....+.+
T Consensus 73 ~~Gk~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l 152 (254)
T COG2875 73 REGKDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESL 152 (254)
T ss_pred HcCCeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHH
Confidence 3344455689999865 4666777888899999999544321 12211111111234555554333333344555
Q ss_pred HHHhhccCccEEEeCCCC
Q 029629 101 AMLQRQLDVDILVTGHTH 118 (190)
Q Consensus 101 ~~~~~~~~~~~vi~GHtH 118 (190)
..+++ .+..++++=-+|
T Consensus 153 ~~la~-~~aTm~I~L~v~ 169 (254)
T COG2875 153 AALAK-HGATMVIFLGVH 169 (254)
T ss_pred HHHHh-cCceeEeeehhh
Confidence 55553 355555553334
No 210
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=28.40 E-value=3.6e+02 Score=22.87 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=47.9
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCH----HHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEeeCCcc
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIK----EVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQV 91 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~----~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~ 91 (190)
+.+.+++++.++|.|+++..-.+. +.++.+++.+.++..+|...|... .......+++..++-....+.
T Consensus 178 ~~l~~~i~~~~id~ViIa~p~~~~~~~~~ll~~~~~~gv~V~~vP~~~e~~~--~~~~~~~i~~v~~l~~~~~~~ 250 (445)
T TIGR03025 178 DDLVELVRAHRVDEVIIALPLSEEARILELLLQLRDLGVDVRLVPDLFEFLL--GRLRIEELGGVPLLSLFDFPL 250 (445)
T ss_pred HHHHHHHHhCCCCEEEEecCcccHHHHHHHHHHHHhcCCEEEEeCchhhhcc--CCcceEEECCEEEEEEeCCCC
Confidence 456677777899999999877663 455666666678999998887642 233345667777776665544
No 211
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=28.38 E-value=1.4e+02 Score=24.91 Aligned_cols=38 Identities=5% Similarity=-0.160 Sum_probs=25.4
Q ss_pred HHHhhhCCCCccEEEEcCCCCCHH--HHHHHhhhCCcEEEe
Q 029629 22 KFKSMLVPGKIQHIICTGNLSIKE--VHDYLKSLCPDLHVT 60 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~--~~~~l~~l~~~~~~v 60 (190)
.+.+++++.+||.|+..| ..+.. .....+.++.|++..
T Consensus 80 ~~~~~l~~~kPd~vi~~g-~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGID-APDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHhcCCCEEEEeC-CCCccHHHHHHHhhCCCCEEEE
Confidence 334456678999999999 56632 334555667787764
No 212
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=27.88 E-value=1.7e+02 Score=23.67 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=32.2
Q ss_pred ccEEEeCCCC-CcceE----EEcCeEEEccC-CccCCCCCCCCCCCCeEEEEEEeCCEEEEEEEE
Q 029629 109 VDILVTGHTH-QFKAY----KHEGGVVINPG-SATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYE 167 (190)
Q Consensus 109 ~~~vi~GHtH-~~~~~----~~~~~~~inpG-s~~~~~~~~~~~~~~~~~ll~i~~~~~~~~~~~ 167 (190)
+++++.|-.. .+... ..++..++||| |... ..+|.+...-..+++-++++
T Consensus 235 Pd~ivL~D~s~~~~~~~~~~~~~~~~~~Np~gsF~~---------~~sF~~Y~~~~~~~~~~~~~ 290 (291)
T PTZ00235 235 PHFICVCDNSCNSFISYASEDTSDCIISNSDMSFTR---------KKTFTVYSALHHEAKRYVVP 290 (291)
T ss_pred CCEEEEecCCCCccceeecccCCceEEECCCCccCC---------CceEEEEehhcceeheeecc
Confidence 5667777774 44332 23478899995 8752 24888888777766655554
No 213
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.57 E-value=1e+02 Score=24.99 Aligned_cols=34 Identities=9% Similarity=-0.134 Sum_probs=26.2
Q ss_pred CCCccEEEEcCCCCC----HHHHHHHhhhCCcEEEecc
Q 029629 29 PGKIQHIICTGNLSI----KEVHDYLKSLCPDLHVTRG 62 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~----~~~~~~l~~l~~~~~~v~G 62 (190)
..+||+||..+.... .+..+.|++++.|++.+.-
T Consensus 89 ~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~ 126 (342)
T cd01139 89 TLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDF 126 (342)
T ss_pred hcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeC
Confidence 478999998766542 4678889998888888863
No 214
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=27.32 E-value=2.7e+02 Score=20.96 Aligned_cols=55 Identities=7% Similarity=-0.071 Sum_probs=25.6
Q ss_pred CeEEEEEeecCCCCCCCChHHHHHhhhCCC--CccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029629 1 MVLVLAIGDLHIPHRASDLPQKFKSMLVPG--KIQHIICTGNLSIKEVHDYLKSLCPDLHVT 60 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~~~~~~~l~~~~~~~--~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
||||++++==-+ ...+.+.+.+.+. ....+++.-|--+..+.++..+.+.|++.+
T Consensus 1 m~ki~vl~sg~g-----s~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~ 57 (200)
T PRK05647 1 MKRIVVLASGNG-----SNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVL 57 (200)
T ss_pred CceEEEEEcCCC-----hhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEE
Confidence 888887764221 1234444444222 234444333332333445555555665543
No 215
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=27.31 E-value=1.8e+02 Score=21.77 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=34.2
Q ss_pred HHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEee--CCccCCC-------CCHHHHHHHhhccCc-cEEEeCCC
Q 029629 48 DYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICH--GHQVIPW-------GDLDSLAMLQRQLDV-DILVTGHT 117 (190)
Q Consensus 48 ~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~H--g~~~~~~-------~~~~~~~~~~~~~~~-~~vi~GHt 117 (190)
+.|.+-..|..++.|--|.. .|...++..+--.+++.- |....+. .....++......++ .++++||+
T Consensus 18 ~~l~~gQ~P~~~~i~C~DsR--v~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleyav~~l~v~~ivV~GH~ 95 (190)
T cd00884 18 EKLAKGQSPKALFIACSDSR--VVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYAVAVLKVEHIVVCGHS 95 (190)
T ss_pred HHhccCCCCCeEEEeeeCCC--CCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHHHHHhCCCEEEEeCCC
Confidence 33433335778888888863 333333332222232222 2222111 011233323334454 48999999
Q ss_pred CCcce
Q 029629 118 HQFKA 122 (190)
Q Consensus 118 H~~~~ 122 (190)
.-..+
T Consensus 96 ~Cgav 100 (190)
T cd00884 96 DCGGI 100 (190)
T ss_pred cchHH
Confidence 86554
No 216
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=27.23 E-value=1.4e+02 Score=22.88 Aligned_cols=40 Identities=3% Similarity=-0.080 Sum_probs=25.7
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVT 60 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+.+.+.+...++|.|++++--.+.+.++.+.+.+.|++++
T Consensus 45 ~~~~~~l~~~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~ 84 (269)
T cd06297 45 RYLESTTLAYLTDGLLLASYDLTERLAERRLPTERPVVLV 84 (269)
T ss_pred HHHHHHHHhcCCCEEEEecCccChHHHHHHhhcCCCEEEE
Confidence 3343333356789888887545556667777766777776
No 217
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=27.13 E-value=94 Score=24.17 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=25.5
Q ss_pred HHHHhhhCCCCccEEEEcC--CCCC-HHHHHHHhhhC------CcEEEeccCCCC
Q 029629 21 QKFKSMLVPGKIQHIICTG--NLSI-KEVHDYLKSLC------PDLHVTRGEYDE 66 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~G--Dl~~-~~~~~~l~~l~------~~~~~v~GNHD~ 66 (190)
..+...+.+.+.|-++++- -.-. ..+++.|++.+ .|+.+|.|||-.
T Consensus 156 acLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~ 210 (265)
T COG4822 156 ACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAK 210 (265)
T ss_pred HHHHHHHHhcCCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhh
Confidence 3444444445554443321 1111 35777777654 488999999954
No 218
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=26.99 E-value=1.4e+02 Score=23.65 Aligned_cols=29 Identities=7% Similarity=-0.074 Sum_probs=20.4
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcEE
Q 029629 30 GKIQHIICTGNLSIKEVHDYLKSLCPDLH 58 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~~ 58 (190)
..||+||++.=--+..++..-.+++.|++
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiI 184 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVV 184 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEE
Confidence 46999999876555556666667776654
No 219
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=26.91 E-value=26 Score=21.97 Aligned_cols=9 Identities=44% Similarity=0.970 Sum_probs=7.3
Q ss_pred cEEEeCCCC
Q 029629 110 DILVTGHTH 118 (190)
Q Consensus 110 ~~vi~GHtH 118 (190)
|++++|||=
T Consensus 4 DliFSGHt~ 12 (74)
T PF14360_consen 4 DLIFSGHTA 12 (74)
T ss_pred CEEEchhHH
Confidence 788999974
No 220
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=26.80 E-value=85 Score=25.55 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=27.7
Q ss_pred CCCccEEEEcCCCCC-HHHHHHHhhh---CCcEEEeccCCCCC
Q 029629 29 PGKIQHIICTGNLSI-KEVHDYLKSL---CPDLHVTRGEYDED 67 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~-~~~~~~l~~l---~~~~~~v~GNHD~~ 67 (190)
..+||+|+++|-|.. +.+.+.+.+. ..|+...||.-+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~Ele 336 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELE 336 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHH
Confidence 578999999999987 3344444432 15899999987643
No 221
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=26.62 E-value=1.7e+02 Score=23.28 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=43.3
Q ss_pred HhhhCCCCccEEEEc---CCCCCHHHHHHHhhhC-CcEEEeccCCCCCCCCCcceEEEeCCEEEEEeeCCccC
Q 029629 24 KSMLVPGKIQHIICT---GNLSIKEVHDYLKSLC-PDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVI 92 (190)
Q Consensus 24 ~~~~~~~~~D~vi~~---GDl~~~~~~~~l~~l~-~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~ 92 (190)
.+.++.-+||.+|=+ |.++.++.++.|.+.. .|+++-.-|-....+...+...+..+-+.++.-|.+..
T Consensus 99 ~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~ 171 (254)
T cd00762 99 EDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFH 171 (254)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCC
Confidence 333444478888763 5688899999998654 58999999988754422222333333344556666543
No 222
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=26.53 E-value=4e+02 Score=22.65 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=49.0
Q ss_pred HHHHHhhhCCCCccEEEEcCCCCCH----HHHHHHhhhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEeeCCccC
Q 029629 20 PQKFKSMLVPGKIQHIICTGNLSIK----EVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVI 92 (190)
Q Consensus 20 ~~~l~~~~~~~~~D~vi~~GDl~~~----~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~ 92 (190)
.+.+.+++++.++|.|+++-...+. +.++.+++.+.++..+|+..|... .......+++..++-+...+..
T Consensus 180 ~~dl~~~i~~~~vd~ViIA~p~~~~~~~~~ll~~~~~~gv~V~vvP~~~e~~~--~~~~i~~l~g~p~l~v~~~~l~ 254 (451)
T TIGR03023 180 LDDLEELIREGEVDEVYIALPLAAEDRILELLDALEDLTVDVRLVPDLFDFAL--LRPRIEEIGGLPVISLRDSPLD 254 (451)
T ss_pred HHHHHHHHHhcCCCEEEEeeCcccHHHHHHHHHHHHhcCCEEEEeCchhhhcc--CCCceEEECCEEEEEEecCCcc
Confidence 3556777777899999999887663 445556666678899998887643 2334455778777777655543
No 223
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=26.51 E-value=1.9e+02 Score=22.60 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=31.3
Q ss_pred HHHHHhhhCCCCccEEEEcCCCCC---HHHHHHHhhhC-CcEEEeccCCCCCC
Q 029629 20 PQKFKSMLVPGKIQHIICTGNLSI---KEVHDYLKSLC-PDLHVTRGEYDEDS 68 (190)
Q Consensus 20 ~~~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~-~~~~~v~GNHD~~~ 68 (190)
.+.+.+.+.+...|+|++.|=..+ +++.+.+++.. .|++.-|||.+.-.
T Consensus 21 ~~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~~~~lPvilfPg~~~~vs 73 (230)
T PF01884_consen 21 PEEALEAACESGTDAIIVGGSDTGVTLDNVVALIKRVTDLPVILFPGSPSQVS 73 (230)
T ss_dssp HHHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHHHSSS-EEEETSTCCG--
T ss_pred cHHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHhcCCCCEEEeCCChhhcC
Confidence 344444445688999999997723 46677777754 69999999999763
No 224
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=26.42 E-value=1.6e+02 Score=20.90 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=27.6
Q ss_pred HHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCC
Q 029629 20 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEY 64 (190)
Q Consensus 20 ~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNH 64 (190)
.+.+.+...+.+ -.+++|.| .+.-+.+++.+.|+..+.|.+
T Consensus 87 De~i~~~a~~~~-~~iVaTnD---~eLk~rlr~~GIPvi~lr~r~ 127 (136)
T COG1412 87 DECLLEAALKHG-RYIVATND---KELKRRLRENGIPVITLRQRK 127 (136)
T ss_pred HHHHHHHHHHcC-CEEEEeCC---HHHHHHHHHcCCCEEEEeCCe
Confidence 345555443222 47888887 566677888888999998754
No 225
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=26.04 E-value=2.2e+02 Score=22.57 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=24.8
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029629 28 VPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 28 ~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
...++|.+|+.+.-.+...++.+.+.+.|++++-
T Consensus 112 ~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~ 145 (329)
T TIGR01481 112 LSKQVDGIIFMGGTITEKLREEFSRSPVPVVLAG 145 (329)
T ss_pred HhCCCCEEEEeCCCCChHHHHHHHhcCCCEEEEe
Confidence 3467999999886555566677777777888773
No 226
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.79 E-value=1.8e+02 Score=19.78 Aligned_cols=39 Identities=10% Similarity=-0.114 Sum_probs=22.7
Q ss_pred hhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCC
Q 029629 26 MLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEY 64 (190)
Q Consensus 26 ~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNH 64 (190)
.++..+.+.+....+.-.++..+...+..+.++++.+.-
T Consensus 22 ~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 22 ALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccc
Confidence 344566676666666555556666666555566655543
No 227
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.56 E-value=1.5e+02 Score=22.50 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=23.3
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecc
Q 029629 29 PGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRG 62 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
..+||+||...-......++.|+++++++++...
T Consensus 55 ~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~ 88 (245)
T cd01144 55 ALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEP 88 (245)
T ss_pred hCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCC
Confidence 4789999875432233448889998888777643
No 228
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=25.52 E-value=1.2e+02 Score=25.24 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=24.4
Q ss_pred CccEEEEcCCCCCH-----HHHHHHhhhCCcEEEeccCCC
Q 029629 31 KIQHIICTGNLSIK-----EVHDYLKSLCPDLHVTRGEYD 65 (190)
Q Consensus 31 ~~D~vi~~GDl~~~-----~~~~~l~~l~~~~~~v~GNHD 65 (190)
+||.|+++|=+... .+.+.++.+ .|++..||.-+
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~-a~v~~~pg~~e 331 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFI-APVLVYPGEDE 331 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhh-CCEEEeCCcHH
Confidence 79999999988762 333444444 68999999543
No 229
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=25.51 E-value=1e+02 Score=25.11 Aligned_cols=35 Identities=14% Similarity=0.036 Sum_probs=26.0
Q ss_pred cEEEEcCCCCC------HHHHHHHhhhCCcEE--EeccCCCCC
Q 029629 33 QHIICTGNLSI------KEVHDYLKSLCPDLH--VTRGEYDED 67 (190)
Q Consensus 33 D~vi~~GDl~~------~~~~~~l~~l~~~~~--~v~GNHD~~ 67 (190)
-.++++|+-.. .++.+.|++.+.+++ -++|+||..
T Consensus 240 ~~~l~~g~~~~~~~~pNr~L~~~L~~~g~~~~yre~~GgHdw~ 282 (299)
T COG2382 240 RIVLTTGGEEGDFLRPNRALAAQLEKKGIPYYYREYPGGHDWA 282 (299)
T ss_pred eEEeecCCccccccchhHHHHHHHHhcCCcceeeecCCCCchh
Confidence 37788887665 467788888776655 489999975
No 230
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=25.46 E-value=1.7e+02 Score=22.13 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=26.9
Q ss_pred HHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029629 22 KFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVT 60 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
.+..++ ..++|.+++.|.......++.+.+.+.|++++
T Consensus 47 ~~~~l~-~~~vdgiii~~~~~~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 47 QARKLL-ERGVDGLALIGLDHSPALLDLLARRGVPYVAT 84 (268)
T ss_pred HHHHHH-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE
Confidence 344443 45799999988665666777777777788877
No 231
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.42 E-value=1.5e+02 Score=20.58 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=28.6
Q ss_pred HHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecc
Q 029629 23 FKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRG 62 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
+.+++.+.++|.|++.+. .+..+..|++.+..+|..+|
T Consensus 57 ~a~~l~~~gvdvvi~~~i--G~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 57 IAELLVDEGVDVVIASNI--GPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHcCCCEEEECcc--CHHHHHHHHHcCcEEEecCC
Confidence 445555688999998764 45678889888878888777
No 232
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.82 E-value=46 Score=24.41 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=7.8
Q ss_pred HHHhhccCccEEEeC
Q 029629 101 AMLQRQLDVDILVTG 115 (190)
Q Consensus 101 ~~~~~~~~~~~vi~G 115 (190)
.+.+...++|+++.|
T Consensus 92 ~~~I~~~~pdiv~vg 106 (171)
T cd06533 92 IERINASGADILFVG 106 (171)
T ss_pred HHHHHHcCCCEEEEE
Confidence 333445566666554
No 233
>PLN03014 carbonic anhydrase
Probab=24.38 E-value=1.9e+02 Score=24.12 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=32.5
Q ss_pred CCcEEEeccCCCCCCCCCcceEEEeCCEEEEEee--CCccCCC------CCHHHHHHHhhccCcc-EEEeCCCCCcc
Q 029629 54 CPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICH--GHQVIPW------GDLDSLAMLQRQLDVD-ILVTGHTHQFK 121 (190)
Q Consensus 54 ~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~H--g~~~~~~------~~~~~~~~~~~~~~~~-~vi~GHtH~~~ 121 (190)
..|.+++.|--|-. .|...++..+--.+++.- |....+. .....++......++. ++++||++-..
T Consensus 158 Q~P~alvI~CsDSR--V~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGa 232 (347)
T PLN03014 158 QSPKYMVFACSDSR--VCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGG 232 (347)
T ss_pred CCCCEEEEEeccCC--CCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchH
Confidence 35788888888864 333333332222233222 2222111 1122333333444554 89999999764
No 234
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=24.34 E-value=2.1e+02 Score=23.90 Aligned_cols=86 Identities=14% Similarity=0.237 Sum_probs=50.8
Q ss_pred ccEEEEc-CCCCCHHHHHHHhhhCCcEEEeccCC-CCCCCC-CcceEEEeCCEEEEEee-CCccCCCC-----CHHHHHH
Q 029629 32 IQHIICT-GNLSIKEVHDYLKSLCPDLHVTRGEY-DEDSRY-PETKTLTIGQFKLGICH-GHQVIPWG-----DLDSLAM 102 (190)
Q Consensus 32 ~D~vi~~-GDl~~~~~~~~l~~l~~~~~~v~GNH-D~~~~~-p~~~~~~~~~~~i~~~H-g~~~~~~~-----~~~~~~~ 102 (190)
+|++-+. +++.+.+.++.+.+.+.|+.+=.|-+ +...-. --..+...++.+++++| |-..+|.. +...+..
T Consensus 202 vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~ 281 (360)
T PRK12595 202 VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPI 281 (360)
T ss_pred CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHH
Confidence 6776665 55666788888888888999988864 432100 11222334556899999 75433311 2223333
Q ss_pred HhhccCccEEE-eCCC
Q 029629 103 LQRQLDVDILV-TGHT 117 (190)
Q Consensus 103 ~~~~~~~~~vi-~GHt 117 (190)
+-+.++..+++ +.|+
T Consensus 282 lk~~~~~PV~~d~~Hs 297 (360)
T PRK12595 282 LKQETHLPVMVDVTHS 297 (360)
T ss_pred HHHHhCCCEEEeCCCC
Confidence 33346777777 6776
No 235
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=24.03 E-value=2.2e+02 Score=18.77 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHhhhCCCCccEEEEcCCCCCHHHHHHHh----hhCCcEEEeccCCCC
Q 029629 23 FKSMLVPGKIQHIICTGNLSIKEVHDYLK----SLCPDLHVTRGEYDE 66 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~~~~~~~l~----~l~~~~~~v~GNHD~ 66 (190)
..+.+++.++-+||++.|. .+...+.+. ....|++...|+-+.
T Consensus 24 v~kai~~gkaklViiA~D~-~~~~~~~i~~~c~~~~Ip~~~~~~tk~e 70 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNC-PKDIKEDIEYYAKLSGIPVYEYEGSSVE 70 (99)
T ss_pred HHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEECCCHHH
Confidence 3344556789999999996 434434333 234688777776654
No 236
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=24.01 E-value=1.7e+02 Score=22.04 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=24.8
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVT 60 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+.+.+++...++|.+++.+--.+...++.+.+.+.|++++
T Consensus 49 ~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~ 88 (268)
T cd06271 49 EVYRRLVESGLVDGVIISRTRPDDPRVALLLERGFPFVTH 88 (268)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCChHHHHHHhcCCCEEEE
Confidence 3455555456789888876433334456666666788776
No 237
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.00 E-value=28 Score=27.29 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=40.6
Q ss_pred EEcCCCCCHHHHHHHhhhCCcEEEeccCCCCCCCCC-cceEE-EeCCEEEEEeeCCccCCCCC----HHHHHHHhhccCc
Q 029629 36 ICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYP-ETKTL-TIGQFKLGICHGHQVIPWGD----LDSLAMLQRQLDV 109 (190)
Q Consensus 36 i~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~~~p-~~~~~-~~~~~~i~~~Hg~~~~~~~~----~~~~~~~~~~~~~ 109 (190)
|-.||+.+...++.+.+.+.|++.=-|=..... .. .-..+ +.++.++.+.|.-..+|... ...+..+.+.+++
T Consensus 95 IaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~E-I~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~ 173 (241)
T PF03102_consen 95 IASGDLTNLPLLEYIAKTGKPVILSTGMSTLEE-IERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGV 173 (241)
T ss_dssp E-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHH-HHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTS
T ss_pred eccccccCHHHHHHHHHhCCcEEEECCCCCHHH-HHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCC
Confidence 455666666677777776667666555443210 00 00111 34678899999765444321 1223445557788
Q ss_pred cEEEeCCCCC
Q 029629 110 DILVTGHTHQ 119 (190)
Q Consensus 110 ~~vi~GHtH~ 119 (190)
.+=+++|+=.
T Consensus 174 ~vG~SDHt~g 183 (241)
T PF03102_consen 174 PVGYSDHTDG 183 (241)
T ss_dssp EEEEEE-SSS
T ss_pred CEEeCCCCCC
Confidence 8899999873
No 238
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=23.91 E-value=70 Score=25.44 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=9.3
Q ss_pred eEEEEEeecCC
Q 029629 2 VLVLAIGDLHI 12 (190)
Q Consensus 2 mri~~iSD~H~ 12 (190)
|||++++....
T Consensus 1 MkIl~~~~~~~ 11 (365)
T cd03825 1 MKVLHLNTSDI 11 (365)
T ss_pred CeEEEEecCCC
Confidence 89999998765
No 239
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.87 E-value=2.3e+02 Score=21.06 Aligned_cols=10 Identities=20% Similarity=-0.060 Sum_probs=5.3
Q ss_pred cEEEeccCCC
Q 029629 56 DLHVTRGEYD 65 (190)
Q Consensus 56 ~~~~v~GNHD 65 (190)
|-+++-||--
T Consensus 125 PDivlcGNK~ 134 (219)
T KOG0081|consen 125 PDIVLCGNKA 134 (219)
T ss_pred CCEEEEcCcc
Confidence 4455556653
No 240
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.80 E-value=57 Score=24.81 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=23.4
Q ss_pred hHHHHHhhhCCCCccEEEEcCCC--CCHHHHHHHh
Q 029629 19 LPQKFKSMLVPGKIQHIICTGNL--SIKEVHDYLK 51 (190)
Q Consensus 19 ~~~~l~~~~~~~~~D~vi~~GDl--~~~~~~~~l~ 51 (190)
+.+.+.+.+++.+||.|+++|=+ ..++.++.++
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~ 101 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFE 101 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhh
Confidence 45567777778999999999943 2355555555
No 241
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.77 E-value=1.9e+02 Score=21.71 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=27.4
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVT 60 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+.+.+++ ..++|.+++++.-.+...++.+++.+.|++.+
T Consensus 46 ~~i~~l~-~~~~dgii~~~~~~~~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 46 EALELLA-RQKVDGIILLATTITDEHREAIKKLNVPVVVV 84 (259)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhcCCCCEEEE
Confidence 3444433 47899999988655566677777766788777
No 242
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=23.68 E-value=2e+02 Score=26.01 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=41.1
Q ss_pred HHHHhhccCcc----EEEeCCCCCcce-----EEEcCeEEEccCCccCCCCCCCCCCCCeEEEEEEeCC
Q 029629 100 LAMLQRQLDVD----ILVTGHTHQFKA-----YKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGL 159 (190)
Q Consensus 100 ~~~~~~~~~~~----~vi~GHtH~~~~-----~~~~~~~~inpGs~~~~~~~~~~~~~~~~~ll~i~~~ 159 (190)
...+++.++.+ -++.||+-.-.. .+.+|..++--|..+.+|. ...+.++|.++.-.-+
T Consensus 511 c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskAYq--k~TGIAGYTLiyNS~g 577 (640)
T PF06874_consen 511 CDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKAYQ--KTTGIAGYTLIYNSYG 577 (640)
T ss_pred HHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhhhc--cccCccceEEEecCCc
Confidence 45566666666 899999986432 4567888888888887653 3456789999875544
No 243
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=23.53 E-value=50 Score=26.43 Aligned_cols=60 Identities=12% Similarity=0.005 Sum_probs=31.3
Q ss_pred hhCCcEEEeccCCCCCCCCCcceEEEeCCEEEEEeeCCccCCCCCHHHHHHHhhccCccEEEeCC
Q 029629 52 SLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGH 116 (190)
Q Consensus 52 ~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~~~~~~~~~~~~~vi~GH 116 (190)
.+...+..|.||||....+-+. -|..+...--.........+++.++++++++|+++..-
T Consensus 115 ~L~~eI~~VIsNH~dl~~~v~~-----~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLAR 174 (287)
T COG0788 115 ELPAEIVAVISNHDDLRPLVER-----FDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLAR 174 (287)
T ss_pred CcCCceEEEEcCCHHHHHHHHH-----cCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehh
Confidence 3556899999999975322111 11111111100000011234566778888999887754
No 244
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=23.50 E-value=2e+02 Score=21.91 Aligned_cols=31 Identities=10% Similarity=-0.158 Sum_probs=23.1
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029629 30 GKIQHIICTGNLSIKEVHDYLKSLCPDLHVT 60 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
.-||+|++++=--+..++....+++.|++.+
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i 172 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAI 172 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEE
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEe
Confidence 4499999998767777788888888776543
No 245
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=23.47 E-value=1.7e+02 Score=22.06 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVT 60 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+.+.+++ ..++|.+++++...+.+.++.+.+.+.|++.+
T Consensus 46 ~~i~~l~-~~~vdgiii~~~~~~~~~~~~l~~~~ipvV~~ 84 (268)
T cd06298 46 KVLNNLL-AKQVDGIIFMGGKISEEHREEFKRSPTPVVLA 84 (268)
T ss_pred HHHHHHH-HhcCCEEEEeCCCCcHHHHHHHhcCCCCEEEE
Confidence 3444433 47899999987655556777777666788666
No 246
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.24 E-value=2.1e+02 Score=19.99 Aligned_cols=34 Identities=3% Similarity=-0.249 Sum_probs=15.4
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecc
Q 029629 29 PGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRG 62 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
..+.+.+-..+|...++..+...+....++.+.+
T Consensus 28 ~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 28 DLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred hCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 3455555554443334444444444444444443
No 247
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=23.16 E-value=2.3e+02 Score=19.47 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHhhhCCCCccEEEEcCCCCCHHHHHHHhh----hCCcEEEeccCCC
Q 029629 22 KFKSMLVPGKIQHIICTGNLSIKEVHDYLKS----LCPDLHVTRGEYD 65 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~----l~~~~~~v~GNHD 65 (190)
...+.+++.+..+|+++.|.--.+....+.. .+.|+.+|+.-.+
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~ 81 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKE 81 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHH
Confidence 3445566788999999999885544444433 3468888865444
No 248
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.87 E-value=2e+02 Score=21.66 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=23.8
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029629 28 VPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 28 ~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
...++|.||+.+.-.+...++.+.+.+.|++++-
T Consensus 52 ~~~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~~ 85 (265)
T cd06299 52 LSQRVDGIIVVPHEQSAEQLEDLLKRGIPVVFVD 85 (265)
T ss_pred HhcCCCEEEEcCCCCChHHHHHHHhCCCCEEEEe
Confidence 3568999999875444455677777677877763
No 249
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=22.76 E-value=1.7e+02 Score=20.04 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=27.0
Q ss_pred HHHhhhCCCCccEEEEcCCCCCHHHHHHH---h-hhCCcEEEeccCCC
Q 029629 22 KFKSMLVPGKIQHIICTGNLSIKEVHDYL---K-SLCPDLHVTRGEYD 65 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l---~-~l~~~~~~v~GNHD 65 (190)
...+.+++.+.-+||+++|....+....+ . ....|++++.-+.|
T Consensus 33 ~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~e 80 (117)
T TIGR03677 33 EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKED 80 (117)
T ss_pred HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHH
Confidence 34445566789999999999875433333 2 23468655543333
No 250
>PRK06756 flavodoxin; Provisional
Probab=22.68 E-value=92 Score=21.86 Aligned_cols=33 Identities=6% Similarity=0.042 Sum_probs=18.0
Q ss_pred CeEEEEEeecCCCCCCCChHHHHHhhhCCCCccE
Q 029629 1 MVLVLAIGDLHIPHRASDLPQKFKSMLVPGKIQH 34 (190)
Q Consensus 1 Mmri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~ 34 (190)
|||++++-.+..+ ....+.+.+.+-+++.+.+.
T Consensus 1 mmkv~IiY~S~tG-nTe~vA~~ia~~l~~~g~~v 33 (148)
T PRK06756 1 MSKLVMIFASMSG-NTEEMADHIAGVIRETENEI 33 (148)
T ss_pred CceEEEEEECCCc-hHHHHHHHHHHHHhhcCCeE
Confidence 8999888877643 22233344444444344443
No 251
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.43 E-value=1.8e+02 Score=22.06 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=26.6
Q ss_pred HHHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029629 20 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 20 ~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
.+.+.+++...++|.+++.+-..+...++.+.+.+.|++++-
T Consensus 49 ~~~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~ 90 (270)
T cd06294 49 LEEVKKMIQQKRVDGFILLYSREDDPIIDYLKEEKFPFVVIG 90 (270)
T ss_pred HHHHHHHHHHcCcCEEEEecCcCCcHHHHHHHhcCCCEEEEC
Confidence 345555554567899888753333455677777777887773
No 252
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=21.61 E-value=1e+02 Score=19.13 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.4
Q ss_pred HHHHHHhhccCccEEEeCCCCCc
Q 029629 98 DSLAMLQRQLDVDILVTGHTHQF 120 (190)
Q Consensus 98 ~~~~~~~~~~~~~~vi~GHtH~~ 120 (190)
..+.+.+++.++++++.||.-.-
T Consensus 38 ~~~~~~a~~~~~~~Iv~G~~~~d 60 (86)
T cd01984 38 RILKRLAAEEGADVIILGHNADD 60 (86)
T ss_pred HHHHHHHHHcCCCEEEEcCCchh
Confidence 34556777889999999996543
No 253
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=21.29 E-value=2.4e+02 Score=21.28 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHhhhCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEeccCC
Q 029629 21 QKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEY 64 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNH 64 (190)
+.+.+++ ..++|.|++++-..+...++.+.+.+.|++.+ ++.
T Consensus 46 ~~~~~l~-~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~-~~~ 87 (268)
T cd01575 46 ELLRTLL-SRRPAGLILTGLEHTERTRQLLRAAGIPVVEI-MDL 87 (268)
T ss_pred HHHHHHH-HcCCCEEEEeCCCCCHHHHHHHHhcCCCEEEE-ecC
Confidence 3444433 46799999988544556667777777788876 444
No 254
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.95 E-value=2.4e+02 Score=17.93 Aligned_cols=43 Identities=5% Similarity=0.098 Sum_probs=27.4
Q ss_pred HHHhhhCCCCccEEEEcCCCCCHHHHHHH----hhhCCcEEEeccCCC
Q 029629 22 KFKSMLVPGKIQHIICTGNLSIKEVHDYL----KSLCPDLHVTRGEYD 65 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l----~~l~~~~~~v~GNHD 65 (190)
...+.+++.+.-.||++.|.-.. +.+.+ +....|++.+.-+.|
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~Vp~~~~~s~~e 64 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPR-LTEKVEALANEKGVPVSKVDSMKK 64 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHHcCCCEEEECCHHH
Confidence 34444566889999999998873 33333 233468877764433
No 255
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=20.81 E-value=2.4e+02 Score=22.97 Aligned_cols=43 Identities=9% Similarity=-0.076 Sum_probs=27.3
Q ss_pred HHHhhhCCCCccEEEEcCCCCC--HHHHHHHhhhCCcEEEeccCCC
Q 029629 22 KFKSMLVPGKIQHIICTGNLSI--KEVHDYLKSLCPDLHVTRGEYD 65 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~~~~v~GNHD 65 (190)
.+.+++++.+||.|+..| ..+ .......+..+.|++...+|..
T Consensus 76 ~~~~~l~~~kPdivi~~~-~~~~~~~~a~~a~~~~ip~i~~~~~~~ 120 (380)
T PRK00025 76 RLKRRLLAEPPDVFIGID-APDFNLRLEKKLRKAGIPTIHYVSPSV 120 (380)
T ss_pred HHHHHHHHcCCCEEEEeC-CCCCCHHHHHHHHHCCCCEEEEeCCch
Confidence 344455678999999988 432 2333344445678877777664
No 256
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=20.71 E-value=65 Score=24.96 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=14.4
Q ss_pred HHHHhhhCCCCccEEEEcC
Q 029629 21 QKFKSMLVPGKIQHIICTG 39 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~G 39 (190)
+.+.+.+++.+||+||++|
T Consensus 51 ~~l~~~i~~~~Pd~Vi~~G 69 (222)
T PRK13195 51 AAAQQAIAEIEPALVIMLG 69 (222)
T ss_pred HHHHHHHHHHCCCEEEEeC
Confidence 3555556667899999999
No 257
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=20.62 E-value=1.9e+02 Score=23.96 Aligned_cols=32 Identities=3% Similarity=-0.089 Sum_probs=24.6
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029629 29 PGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTR 61 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
..+||+||..+. ...+.++.|++.+.|++.+.
T Consensus 117 ~l~PDLVi~~~~-~~~~~~~~L~~~gi~V~~~~ 148 (359)
T PRK09534 117 GLDPDLVLAPNA-VAGDTVTRLREAGITVFHFP 148 (359)
T ss_pred cCCCCEEEEcCC-CchHHHHHHHHCCCeEEEeC
Confidence 478999998653 34567899999988887775
No 258
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=20.62 E-value=88 Score=22.67 Aligned_cols=33 Identities=18% Similarity=0.029 Sum_probs=21.2
Q ss_pred eEEEEEeecCCCCCCCChHHHHHhhhCC--CCccEEEEcC
Q 029629 2 VLVLAIGDLHIPHRASDLPQKFKSMLVP--GKIQHIICTG 39 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~--~~~D~vi~~G 39 (190)
|||++-||--+ ..+.+.+.+.+++ .+.+ |+-.|
T Consensus 3 mkI~igsDhaG----~~lK~~l~~~L~~~~~g~e-V~D~G 37 (151)
T PTZ00215 3 KKVAIGSDHAG----FDLKNEIIDYIKNKGKEYK-IEDMG 37 (151)
T ss_pred cEEEEEeCCch----HHHHHHHHHHHHhccCCCE-EEEcC
Confidence 89999999654 2456677777765 5543 34344
No 259
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=20.59 E-value=1.3e+02 Score=28.65 Aligned_cols=23 Identities=17% Similarity=0.551 Sum_probs=18.5
Q ss_pred CccEEEEcCC-CC-CHHHHHHHhhh
Q 029629 31 KIQHIICTGN-LS-IKEVHDYLKSL 53 (190)
Q Consensus 31 ~~D~vi~~GD-l~-~~~~~~~l~~l 53 (190)
.+|+|+++|| .. |++.++.|..-
T Consensus 789 ~~DFvlc~GDd~~~DEdmF~~l~~~ 813 (934)
T PLN03064 789 PIDYVLCIGHFLGKDEDIYTFFEPE 813 (934)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHhcc
Confidence 5899999999 44 78888888653
No 260
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=20.57 E-value=5.5e+02 Score=22.65 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=50.8
Q ss_pred CccEEEEcCCCCC-------HHHHHHHhhhCCcEE-EeccCCCCCCCCCcceEEE--eCCEEEEE-eeCCccCCCCCHHH
Q 029629 31 KIQHIICTGNLSI-------KEVHDYLKSLCPDLH-VTRGEYDEDSRYPETKTLT--IGQFKLGI-CHGHQVIPWGDLDS 99 (190)
Q Consensus 31 ~~D~vi~~GDl~~-------~~~~~~l~~l~~~~~-~v~GNHD~~~~~p~~~~~~--~~~~~i~~-~Hg~~~~~~~~~~~ 99 (190)
+-+.|++.||. | .-....|++++.++. +++.......++......+ ..+..+++ +.-+. .....
T Consensus 53 ~~~~I~I~gh~-D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~LiI~vD~G~----~~~~~ 127 (539)
T TIGR00644 53 NNEKILIFGDY-DVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVSLIITVDNGI----SAHEE 127 (539)
T ss_pred cCCeEEEEEcc-CCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHHhcCCCEEEEeCCCc----ccHHH
Confidence 45789999999 5 234567777776554 4443221111121111000 02223333 33111 11222
Q ss_pred HHHHhhccCccEEEeCCCCCcceEEEcCeEEEccCCccC
Q 029629 100 LAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATG 138 (190)
Q Consensus 100 ~~~~~~~~~~~~vi~GHtH~~~~~~~~~~~~inpGs~~~ 138 (190)
. ..+++.+.++++.-| |.+....-+...+|||-..+.
T Consensus 128 ~-~~~~~~g~~vIviDH-H~~~~~~~~~~~~vnP~~~~~ 164 (539)
T TIGR00644 128 I-DYAKELGIDVIVTDH-HEPPEDLPEAAAIVNPNRPDC 164 (539)
T ss_pred H-HHHHhcCCCEEEECC-CCCCCCCCCccEEECCCCCCC
Confidence 2 334567899999999 655432222347889987664
No 261
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.38 E-value=2.5e+02 Score=21.29 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=21.8
Q ss_pred hCCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029629 27 LVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVT 60 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+...++|.+|+.+...+.+.+..+.+.+.|++++
T Consensus 51 ~~~~~~dgiii~~~~~~~~~~~~~~~~~~pvV~i 84 (269)
T cd06293 51 LDTNHVDGLIFVTNRPDDGALAKLINSYGNIVLV 84 (269)
T ss_pred HHHCCCCEEEEeCCCCCHHHHHHHHhcCCCEEEE
Confidence 4457899999998554444444444445677776
No 262
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=20.36 E-value=2.7e+02 Score=22.83 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=14.4
Q ss_pred CCccEEEEcC-CCCCHHHHHHHh
Q 029629 30 GKIQHIICTG-NLSIKEVHDYLK 51 (190)
Q Consensus 30 ~~~D~vi~~G-Dl~~~~~~~~l~ 51 (190)
.+.|.+++.+ +-++.++++.+.
T Consensus 44 ~~~d~ii~~~~~~~~~~~l~~~~ 66 (330)
T PRK12480 44 KDYDGVTTMQFGKLENDVYPKLE 66 (330)
T ss_pred CCCCEEEEecCCCCCHHHHHhhh
Confidence 4678777765 456766666664
No 263
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=20.05 E-value=1.7e+02 Score=22.68 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=7.5
Q ss_pred cEEEEcCCCC
Q 029629 33 QHIICTGNLS 42 (190)
Q Consensus 33 D~vi~~GDl~ 42 (190)
+.++++||.+
T Consensus 119 ~~~lftGDtl 128 (248)
T TIGR03413 119 SPALFCGDTL 128 (248)
T ss_pred CCEEEEcCcc
Confidence 4578889975
No 264
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.04 E-value=2.1e+02 Score=23.84 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=29.1
Q ss_pred HHHHHhhhC-CCCccEEEEcCCCCC---H---HHHHHHhhhCCcEEEeccCCCCC
Q 029629 20 PQKFKSMLV-PGKIQHIICTGNLSI---K---EVHDYLKSLCPDLHVTRGEYDED 67 (190)
Q Consensus 20 ~~~l~~~~~-~~~~D~vi~~GDl~~---~---~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
.+++.++++ ...+|+|++ |..+ . +..+.+++..+.+.++.||=-..
T Consensus 110 ~er~~~L~~~~~g~D~ivi--D~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~ 162 (346)
T PRK05096 110 FEKTKQILALSPALNFICI--DVANGYSEHFVQFVAKAREAWPDKTICAGNVVTG 162 (346)
T ss_pred HHHHHHHHhcCCCCCEEEE--ECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCH
Confidence 345555553 256888877 7766 2 44555665555677888887664
Done!