BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029631
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 99 RMQKENSAPEGFPNFIREGF--EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIF 156
+M+K+ + E RE F E V TS +GL+Y+ E GKG+ PKD V+
Sbjct: 91 KMEKDAADNEAKGKEYREKFAKEKGVKTSS------TGLVYQVVEAGKGEAPKDSDTVVV 144
Query: 157 HYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
+Y G G+ D++Y +G P R+ + ++PG
Sbjct: 145 NYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPG 176
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 133 SGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
+GL+Y+ E GKG+ PKD V+ +Y G G+ D++Y +G P R+ + ++PG
Sbjct: 121 TGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPG 176
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 124 TSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMG 183
TS ++ SGL + D VG G GQ + HY+G E+G+ DS+Y +G P R+G
Sbjct: 3 TSCEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIG 62
Query: 184 TNALVPG 190
++ G
Sbjct: 63 VGEVIKG 69
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
+ GQ V HY G+ G++ DS+ + P +G ++ G
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKG 161
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
+ GQ V HY G+ G++ DS+ + P +G ++ G
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 161
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
+ GQ V HY G+ G++ DS+ + P +G ++ G
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 161
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTIVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
+ GQ V HY G+ G++ DS+ + P +G ++ G
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 161
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 112 NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDST 171
+ G + VVT+E SGL Y D G G + GQ V HY G+ G++ DS+
Sbjct: 13 GLVPRGSHMTVVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSS 66
Query: 172 YLQGSPARIRMGTNALVPG 190
+ P +G ++ G
Sbjct: 67 KDRNDPFAFVLGGGMVIKG 85
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 122 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 181
VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 3 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 56
Query: 182 MGTNALVPG 190
+G ++ G
Sbjct: 57 LGGGMVIKG 65
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 120 VKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPAR 179
+ VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 5 MTVVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFA 58
Query: 180 IRMGTNALVPG 190
+G ++ G
Sbjct: 59 FVLGGGMVIKG 69
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 122 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 181
VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 3 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 56
Query: 182 MGTNALVPG 190
+G ++ G
Sbjct: 57 LGGGHVIKG 65
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 89 DEKRLLEQNKRMQKENSAPEGFP---NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG 145
D R L R+Q + + PE N I E ++ S T +SGL Y D G G
Sbjct: 59 DSLRFLYDGIRIQADQT-PEDLDMEDNDIIEAHREQIGGSTVVTT-ESGLKYEDLTEGSG 116
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
+ GQ V HY G+ G++ S+ + P +G ++ G
Sbjct: 117 AEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKG 161
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 136 IYRDFEVGKGDCPKDGQQVIFHYIGYNE-SGRRIDSTYLQGSPARIRMGTNALVPG 190
I R E G+ + PK G +V HY+G E SG+ DS+ + P + +G ++ G
Sbjct: 21 ILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKG 76
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK G V HY G E+G++ DS+ +GSP + +G ++ G
Sbjct: 22 PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G ++G++ DS+ + P + R+G ++ G
Sbjct: 16 PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKG 58
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G+++DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRG 58
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G+++DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRG 58
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRG 58
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 16 PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G G+ DS+ +G P R +G ++ G
Sbjct: 17 PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRG 59
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 18 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 60
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
PK GQ + HY G E G++ DS+ + P + +G ++ G
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRG 58
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 136 IYRDFEVGKGDCPKDGQQVIFHYIGYNES-GRRIDSTYLQGSPARIRMGTNALVPG 190
I + + G+ + PK G +V HY+G ES G+ DS++ + P + + ++ G
Sbjct: 22 ILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKG 77
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 136 IYRDFEVGKGDCPKDGQQVIFHYIGYNES-GRRIDSTYLQGSPARIRMGTNALVPG 190
I + + G+ + PK G +V HY+G ES G+ DS++ + P + + ++ G
Sbjct: 22 ILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKG 77
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 15 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 74
Query: 188 V 188
+
Sbjct: 75 I 75
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 15 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 74
Query: 188 V 188
+
Sbjct: 75 I 75
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 31 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
Query: 188 V 188
+
Sbjct: 91 I 91
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 27 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 86
Query: 188 V 188
+
Sbjct: 87 I 87
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 31 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
Query: 188 V 188
+
Sbjct: 91 I 91
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 31 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
Query: 188 V 188
+
Sbjct: 91 I 91
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
P+ G++V HY G G++ DS+ +G P + +G ++ G
Sbjct: 40 PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 129 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 187
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 27 SKKDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQV 86
Query: 188 V 188
+
Sbjct: 87 I 87
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 133 SGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
SGL Y+ G G P V Y G G DST G PA ++ + ++PG
Sbjct: 106 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPG 161
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 133 SGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
SGL Y+ G G P V Y G G DST G PA ++ + ++PG
Sbjct: 30 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPG 85
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 130 KRDSGLIYRDFEVGKGDC-PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 188
K+D G++ + G+G P G V HY+G E+G + DS+ +G +G ++
Sbjct: 11 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVI 70
Query: 189 PG 190
G
Sbjct: 71 KG 72
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
D P+ G +V HY G G++ DS+ + + ++G ++ G
Sbjct: 25 DTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKG 69
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
D P+ G +V HY G G++ DS+ + + ++G ++ G
Sbjct: 41 DTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKG 85
>pdb|1M41|A Chain A, Crystal Structure Of Escherichia Coli Alkanesulfonate
Monooxygenase Ssud At 2.3 A Resolution
pdb|1M41|B Chain B, Crystal Structure Of Escherichia Coli Alkanesulfonate
Monooxygenase Ssud At 2.3 A Resolution
Length = 380
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 157 HYIGYNESGRRIDSTYLQG-SPARIRMG-TNALVP 189
HY+G E R +D YLQ + A R+G T L+P
Sbjct: 15 HYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIP 49
>pdb|1NQK|A Chain A, Structural Genomics, Crystal Structure Of Alkanesulfonate
Monooxygenase
Length = 381
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 157 HYIGYNESGRRIDSTYLQG-SPARIRMG-TNALVP 189
HY+G E R +D YLQ + A R+G T L+P
Sbjct: 16 HYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIP 50
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 149 KDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190
+ G + HY G E G DS+ Q P +GT ++ G
Sbjct: 7 RKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKG 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,617,767
Number of Sequences: 62578
Number of extensions: 242503
Number of successful extensions: 428
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 56
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)