Query 029631
Match_columns 190
No_of_seqs 236 out of 1711
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 16:00:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11570 peptidyl-prolyl cis-t 99.9 1.1E-23 2.5E-28 177.1 11.6 124 57-190 32-157 (206)
2 COG0545 FkpA FKBP-type peptidy 99.9 8.6E-22 1.9E-26 165.3 10.5 123 58-190 32-156 (205)
3 PRK10902 FKBP-type peptidyl-pr 99.9 1.8E-21 3.9E-26 169.8 11.4 123 57-190 73-201 (269)
4 KOG0544 FKBP-type peptidyl-pro 99.5 5.5E-14 1.2E-18 106.1 7.3 57 134-190 2-59 (108)
5 TIGR03516 ppisom_GldI peptidyl 99.4 1E-12 2.3E-17 108.4 8.5 65 125-190 61-127 (177)
6 KOG0549 FKBP-type peptidyl-pro 99.3 8.1E-12 1.8E-16 103.8 7.8 61 130-190 65-127 (188)
7 KOG0552 FKBP-type peptidyl-pro 99.2 2.9E-11 6.3E-16 103.5 7.2 62 128-190 115-178 (226)
8 PF01346 FKBP_N: Domain amino 99.0 3E-10 6.6E-15 87.2 4.2 74 58-139 45-124 (124)
9 PF00254 FKBP_C: FKBP-type pep 98.6 3.7E-08 8E-13 71.6 4.6 44 147-190 4-47 (94)
10 KOG0543 FKBP-type peptidyl-pro 97.0 0.0013 2.8E-08 60.8 5.8 55 132-190 83-140 (397)
11 TIGR00115 tig trigger factor. 95.3 0.022 4.7E-07 51.9 4.3 42 146-190 145-186 (408)
12 PRK01490 tig trigger factor; P 94.9 0.039 8.4E-07 50.7 4.9 42 146-190 156-197 (435)
13 KOG0545 Aryl-hydrocarbon recep 94.6 0.031 6.8E-07 49.7 3.2 54 131-184 8-65 (329)
14 COG0544 Tig FKBP-type peptidyl 92.5 0.18 3.8E-06 47.4 4.6 40 148-190 158-197 (441)
15 PF11012 DUF2850: Protein of u 47.9 23 0.0005 25.9 3.0 41 145-185 10-51 (79)
16 PHA02122 hypothetical protein 25.0 1E+02 0.0022 21.5 3.1 19 149-168 39-57 (65)
17 COG2258 Uncharacterized protei 23.9 60 0.0013 27.9 2.2 27 132-161 138-164 (210)
18 PRK11536 6-N-hydroxylaminopuri 22.8 64 0.0014 27.8 2.2 25 132-159 141-165 (223)
No 1
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.90 E-value=1.1e-23 Score=177.12 Aligned_cols=124 Identities=24% Similarity=0.375 Sum_probs=113.0
Q ss_pred ccchhhhhHHHHhc--CCCCCcCHHHHHhhhchHHHHHHHHHHHHHHHHcCCCCCChhhHhhccccccccCCCeeecCCc
Q 029631 57 KLKRRVVPFLLFSS--GLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSG 134 (190)
Q Consensus 57 ~l~~~~~l~~~~a~--g~~~~ls~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~fp~fl~~~~~~k~~~~~gv~~t~sG 134 (190)
.|+...|+.++.++ |+.+.|++++++..++.++++.++.++++.+++..++++| +++| ++++||+++++|
T Consensus 32 ~~d~~~~~~G~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---l~~~-----~k~~gv~~t~sG 103 (206)
T PRK11570 32 GLLPEALVAGLADALEGKHPAVPVDVVHRALREIHERADAVRRERQQAMAAEGVKF---LEEN-----AKKEGVNSTESG 103 (206)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh-----hhcCCcEECCCC
Confidence 57889999999886 7888999999999999999887777777777777777666 9999 899999999999
Q ss_pred cEEEEeecccCCCCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 135 LIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 135 L~y~vlkeG~G~~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
|+|+++++|+|..|+.+|.|.|||+|+++||++|||||.++.|+.|.+ +++|||
T Consensus 104 l~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l--~~vipG 157 (206)
T PRK11570 104 LQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--NGVIPG 157 (206)
T ss_pred cEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEe--echhhH
Confidence 999999999999999999999999999999999999999999999999 578886
No 2
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.6e-22 Score=165.30 Aligned_cols=123 Identities=21% Similarity=0.397 Sum_probs=97.5
Q ss_pred cchhhhhHHHHhc-C-CCCCcCHHHHHhhhchHHHHHHHHHHHHHHHHcCCCCCChhhHhhccccccccCCCeeecCCcc
Q 029631 58 LKRRVVPFLLFSS-G-LFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGL 135 (190)
Q Consensus 58 l~~~~~l~~~~a~-g-~~~~ls~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~fp~fl~~~~~~k~~~~~gv~~t~sGL 135 (190)
++...++.++..+ . +......+..+...+..+.+..+..++.+..|..++..| +++| ++..+++++++||
T Consensus 32 ld~~~ll~gi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f---~~~~-----~k~~~v~~~~sgl 103 (205)
T COG0545 32 LDKDALLAGLEDALALVQKEAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKAF---LEKN-----AKEKGVKTLPSGL 103 (205)
T ss_pred ccHHHHHHhHHHHHhccchhhhhhHHHHHHHHHHHHHHHHhhhhHHHhHHhHHHH---Hhhh-----cccCCceECCCCc
Confidence 6666677776554 2 212333344444444444555555566666777777666 9998 8899999999999
Q ss_pred EEEEeecccCCCCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 136 IYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 136 ~y~vlkeG~G~~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
+|++++.|+|..|+.+|+|+|||+|+|.||++|||||+||+|+.|+| ++||||
T Consensus 104 ~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l--~~vI~G 156 (205)
T COG0545 104 QYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPL--GGVIPG 156 (205)
T ss_pred EEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeec--CCeeeh
Confidence 99999999999999999999999999999999999999999999999 699998
No 3
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.86 E-value=1.8e-21 Score=169.77 Aligned_cols=123 Identities=20% Similarity=0.405 Sum_probs=108.9
Q ss_pred ccchhhhhHHHHhc--CCCCCcCHHHHHhhhchHHHHHH----HHHHHHHHHHcCCCCCChhhHhhccccccccCCCeee
Q 029631 57 KLKRRVVPFLLFSS--GLFPTLSASGKTKSKNPYDEKRL----LEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTK 130 (190)
Q Consensus 57 ~l~~~~~l~~~~a~--g~~~~ls~~~~~~~~~~~~e~~~----~~~~~~~~~~~~~~~~fp~fl~~~~~~k~~~~~gv~~ 130 (190)
.|+...|+.++.++ |+ ..|+++++++.++.++++.+ +++++++++|+.++++| +++| ++++||++
T Consensus 73 ~~d~~~~~~G~~d~~~~~-~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---l~~~-----~k~~gv~~ 143 (269)
T PRK10902 73 KLDKDQLIAGVQDAFADK-SKLSDQEIEQTLQAFEARVKSAAQAKMEKDAADNEAKGKKY---REKF-----AKEKGVKT 143 (269)
T ss_pred CcCHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh-----ccCCCcEE
Confidence 48899999999886 55 48999999999999986433 34455677888888777 9999 89999999
Q ss_pred cCCccEEEEeecccCCCCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 131 RDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 131 t~sGL~y~vlkeG~G~~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
+++||+|+|+++|+|..|+.||.|.|||+|++.||++||++|.++.|+.|.+ +++|||
T Consensus 144 t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG 201 (269)
T PRK10902 144 TSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPG 201 (269)
T ss_pred CCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchH
Confidence 9999999999999999999999999999999999999999999999999999 679987
No 4
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.5e-14 Score=106.08 Aligned_cols=57 Identities=32% Similarity=0.648 Sum_probs=54.8
Q ss_pred ccEEEEeecccCC-CCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 134 GLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 134 GL~y~vlkeG~G~-~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
|+..++|..|+|. .|+.||+|++||+|.+.||+.||||.+++.|+.|.+|.++||.|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkG 59 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKG 59 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeec
Confidence 7889999999995 79999999999999999999999999999999999999999987
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.40 E-value=1e-12 Score=108.39 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=58.7
Q ss_pred CCCeeecCCccEEEEeec--ccCCCCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 125 SENYTKRDSGLIYRDFEV--GKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 125 ~~gv~~t~sGL~y~vlke--G~G~~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
...+.++++|++|.++++ |+|..|+.||.|++||++++.||++||++++. .|+.|.+|.+++|||
T Consensus 61 ~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~G 127 (177)
T TIGR03516 61 IVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSG 127 (177)
T ss_pred CCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHH
Confidence 366789999999999976 77789999999999999999999999999974 599999998899986
No 6
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=8.1e-12 Score=103.76 Aligned_cols=61 Identities=28% Similarity=0.489 Sum_probs=53.5
Q ss_pred ecCCccEEEEeecc--cCCCCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 130 KRDSGLIYRDFEVG--KGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 130 ~t~sGL~y~vlkeG--~G~~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
.+.++|++.++++- ...+.+.||.|.+||+|.+.||++|||||.+|+|++|.||.++||+|
T Consensus 65 ~~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG 127 (188)
T KOG0549|consen 65 NPDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKG 127 (188)
T ss_pred CCCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceecc
Confidence 34567777777753 45678899999999999999999999999999999999999999998
No 7
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.9e-11 Score=103.48 Aligned_cols=62 Identities=34% Similarity=0.674 Sum_probs=58.8
Q ss_pred eeecCCccEEEEeecccCCCCCCCCeEEEEEEEEeC-CCCEEeccccCCCCeE-EEeCCCceecC
Q 029631 128 YTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNE-SGRRIDSTYLQGSPAR-IRMGTNALVPG 190 (190)
Q Consensus 128 v~~t~sGL~y~vlkeG~G~~p~~gD~V~v~Y~G~l~-dGtvFDSS~~~g~P~~-f~lG~g~vIpG 190 (190)
.+++++||+|+.++.|+|+.+..|+.|.|||.|++. +|++||+++. +.|+. |.+|.++||+|
T Consensus 115 ~~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG 178 (226)
T KOG0552|consen 115 SRTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKG 178 (226)
T ss_pred ceecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCch
Confidence 478999999999999999999999999999999999 9999999997 57999 99999999997
No 8
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=99.01 E-value=3e-10 Score=87.18 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=58.1
Q ss_pred cchhhhhHHHHhc--CCCCCcCHHHHHhhhchHHHHHHHHHHHH----HHHHcCCCCCChhhHhhccccccccCCCeeec
Q 029631 58 LKRRVVPFLLFSS--GLFPTLSASGKTKSKNPYDEKRLLEQNKR----MQKENSAPEGFPNFIREGFEVKVVTSENYTKR 131 (190)
Q Consensus 58 l~~~~~l~~~~a~--g~~~~ls~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~~~fp~fl~~~~~~k~~~~~gv~~t 131 (190)
|+...|+.+|.++ ++.+.|+++++++.++.+++++++++++. +++|+..+++| |++| ++++||++|
T Consensus 45 ld~~~~~~Gi~dal~~~~~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---la~n-----~k~~GV~~t 116 (124)
T PF01346_consen 45 LDIDAFLAGIRDALAGKKPKLSDEEAQEALQAFQQKMQAKQQEKMAKAAEKNKAEGEAF---LAEN-----AKKEGVKTT 116 (124)
T ss_dssp --HHHHHHHHHHHHCTT--SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----HTSTTEEE-
T ss_pred cCHHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHH---HHHH-----cCCCCCEEC
Confidence 8999999999885 78889999999999999987666555444 88888888766 9999 899999999
Q ss_pred CCccEEEE
Q 029631 132 DSGLIYRD 139 (190)
Q Consensus 132 ~sGL~y~v 139 (190)
+|||+|+|
T Consensus 117 ~SGLqY~V 124 (124)
T PF01346_consen 117 ESGLQYKV 124 (124)
T ss_dssp TTS-EEEE
T ss_pred CCCCeeeC
Confidence 99999997
No 9
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=98.64 E-value=3.7e-08 Score=71.58 Aligned_cols=44 Identities=41% Similarity=0.881 Sum_probs=41.7
Q ss_pred CCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 147 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 147 ~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
+|+.||.|.+||.+++.||++|+++|..+.|+.|.+|.+++|||
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g 47 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPG 47 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHH
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccc
Confidence 59999999999999999999999999989999999999999886
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0013 Score=60.77 Aligned_cols=55 Identities=29% Similarity=0.414 Sum_probs=45.9
Q ss_pred CCccEEEEeecccC--CCCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCC-CceecC
Q 029631 132 DSGLIYRDFEVGKG--DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGT-NALVPG 190 (190)
Q Consensus 132 ~sGL~y~vlkeG~G--~~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~-g~vIpG 190 (190)
+.+|..+|+++|.| ..|..|..|+|||.|++.|| +|+++- ..+.|.+|. ..||.|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~G 140 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEG 140 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHH
Confidence 78899999999999 68999999999999999888 788763 458888876 356644
No 11
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=95.29 E-value=0.022 Score=51.88 Aligned_cols=42 Identities=17% Similarity=0.520 Sum_probs=36.4
Q ss_pred CCCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 146 ~~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
..+..||.|+++|+|+. ||..|+++. +.++.|.+|.+.+|||
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~ 186 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPG 186 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchh
Confidence 35788999999999986 999999874 4689999999999886
No 12
>PRK01490 tig trigger factor; Provisional
Probab=94.94 E-value=0.039 Score=50.74 Aligned_cols=42 Identities=17% Similarity=0.502 Sum_probs=36.3
Q ss_pred CCCCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 146 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 146 ~~p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
..+..||.|+++|.|+. ||+.|+.+. +.++.|.+|.+++|||
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~ 197 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPG 197 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchh
Confidence 35789999999999998 999998864 4689999999999986
No 13
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.031 Score=49.68 Aligned_cols=54 Identities=30% Similarity=0.434 Sum_probs=46.6
Q ss_pred cCCccEEEEeecccCCC--CCCCCeEEEEEEEEeC--CCCEEeccccCCCCeEEEeCC
Q 029631 131 RDSGLIYRDFEVGKGDC--PKDGQQVIFHYIGYNE--SGRRIDSTYLQGSPARIRMGT 184 (190)
Q Consensus 131 t~sGL~y~vlkeG~G~~--p~~gD~V~v~Y~G~l~--dGtvFDSS~~~g~P~~f~lG~ 184 (190)
...|++.++|..|+|+- -.+|..|.+||..... .++++|.|...|+|..+.+|.
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGk 65 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGK 65 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeecc
Confidence 35688999999999985 5589999999998765 488999999999999999974
No 14
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.18 Score=47.40 Aligned_cols=40 Identities=18% Similarity=0.496 Sum_probs=34.3
Q ss_pred CCCCCeEEEEEEEEeCCCCEEeccccCCCCeEEEeCCCceecC
Q 029631 148 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 190 (190)
Q Consensus 148 p~~gD~V~v~Y~G~l~dGtvFDSS~~~g~P~~f~lG~g~vIpG 190 (190)
+..||.|+|.|.|+. ||..|...-. .-+.+.||.+++|||
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipg 197 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPG 197 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhh
Confidence 889999999999954 9999987543 458899999999997
No 15
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=47.93 E-value=23 Score=25.94 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=33.5
Q ss_pred CCCCCCCCeEEEEEEEEeCCCCEEecccc-CCCCeEEEeCCC
Q 029631 145 GDCPKDGQQVIFHYIGYNESGRRIDSTYL-QGSPARIRMGTN 185 (190)
Q Consensus 145 G~~p~~gD~V~v~Y~G~l~dGtvFDSS~~-~g~P~~f~lG~g 185 (190)
|..|-..|.+++.=.|-..||.++.++|+ .|.-+.+.+|.+
T Consensus 10 ~va~Ya~e~~~l~~~GV~~ngrlV~T~F~fDG~~l~~~~G~~ 51 (79)
T PF11012_consen 10 GVAPYAAEEFTLNESGVFRNGRLVATSFEFDGKTLEYRTGSG 51 (79)
T ss_pred CCCCccccEEEECCCcEEECCCEEeeEEEECCCEEEEEECCe
Confidence 56788889999999999999999988876 467788888754
No 16
>PHA02122 hypothetical protein
Probab=24.97 E-value=1e+02 Score=21.45 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.7
Q ss_pred CCCCeEEEEEEEEeCCCCEE
Q 029631 149 KDGQQVIFHYIGYNESGRRI 168 (190)
Q Consensus 149 ~~gD~V~v~Y~G~l~dGtvF 168 (190)
..||.|.|+|.... ||+.|
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~ 57 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLI 57 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEE
Confidence 37999999999876 77776
No 17
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.95 E-value=60 Score=27.91 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.2
Q ss_pred CCccEEEEeecccCCCCCCCCeEEEEEEEE
Q 029631 132 DSGLIYRDFEVGKGDCPKDGQQVIFHYIGY 161 (190)
Q Consensus 132 ~sGL~y~vlkeG~G~~p~~gD~V~v~Y~G~ 161 (190)
-+|.+|+||.+|. +..||.+.+-+...
T Consensus 138 ~~G~y~RVL~~G~---v~~gD~l~l~~r~~ 164 (210)
T COG2258 138 RTGWYARVLEEGK---VRAGDPLKLIPRPS 164 (210)
T ss_pred cccEEEEEcccce---ecCCCceEEecCCC
Confidence 4689999999887 88999999888765
No 18
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=22.80 E-value=64 Score=27.80 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCccEEEEeecccCCCCCCCCeEEEEEE
Q 029631 132 DSGLIYRDFEVGKGDCPKDGQQVIFHYI 159 (190)
Q Consensus 132 ~sGL~y~vlkeG~G~~p~~gD~V~v~Y~ 159 (190)
-+|.+|+||++|. +.+||.|.+--.
T Consensus 141 ~~G~Y~RVL~~G~---V~~GD~v~l~~r 165 (223)
T PRK11536 141 KCGWLYRVIAPGK---VSADAPLELVSR 165 (223)
T ss_pred CcEEEEEEECCcE---EcCCCEEEEEeC
Confidence 5699999999987 889999887655
Done!