BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029632
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365)
pdb|2Z2R|B Chain B, Nucleosome Assembly Proteins I (Nap-1, 74-365)
Length = 292
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 33 EASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTIT-HHASVTQCLGSIGGHVWY 91
E D EE D++ + +GIP F++ LEN P+ TIT A V + L IG + Y
Sbjct: 91 ELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIG--LEY 148
Query: 92 LGVAKP 97
L +P
Sbjct: 149 LTDGRP 154
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
Mechanism For Histone Binding And Shuttling
Length = 417
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 33 EASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTIT-HHASVTQCLGSIGGHVWY 91
E D EE D++ + +GIP F++ LEN P+ TIT A V + L IG + Y
Sbjct: 164 ELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIG--LEY 221
Query: 92 LGVAKP 97
L +P
Sbjct: 222 LTDGRP 227
>pdb|3LZK|A Chain A, The Crystal Structure Of A Probably Aromatic Amino Acid
Degradation Protein From Sinorhizobium Meliloti 1021
pdb|3LZK|B Chain B, The Crystal Structure Of A Probably Aromatic Amino Acid
Degradation Protein From Sinorhizobium Meliloti 1021
pdb|3LZK|C Chain C, The Crystal Structure Of A Probably Aromatic Amino Acid
Degradation Protein From Sinorhizobium Meliloti 1021
pdb|3LZK|D Chain D, The Crystal Structure Of A Probably Aromatic Amino Acid
Degradation Protein From Sinorhizobium Meliloti 1021
Length = 359
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 37 DGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCL 82
+GE FG +A +D + P+ V RPL TI +V+ L
Sbjct: 245 NGEPFGRANAGIDXTFDFPQLIVHAARTRPLSAGTIIGSGTVSNKL 290
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 29 GQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGH 88
G V+ S G +GPQ LS+ I + H + R + I H+ LG IG
Sbjct: 422 GSVVTVS--GTLYGPQ-----LSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTL 474
Query: 89 VWYLGVAKPSILDSTETEGDMGTNIVR 115
+ GV + S + EG T ++R
Sbjct: 475 LGTAGVNIQAAQLSEDAEGPGATILLR 501
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 29 GQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGH 88
G V+ S G +GPQ LS+ I + H + R + I H+ LG IG
Sbjct: 421 GSVVTVS--GTLYGPQ-----LSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTL 473
Query: 89 VWYLGVAKPSILDSTETEGDMGTNIVR 115
+ GV + S + EG T ++R
Sbjct: 474 LGTAGVNIQAAQLSEDAEGPGATILLR 500
>pdb|2YDX|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|B Chain B, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|C Chain C, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|D Chain D, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|E Chain E, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
Length = 315
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 142 KLNRGTWHA-GPLFKADDMDFYNLELSNTNVVDHTTHSFKKNGVVYT 187
+ + WHA G F+ F + L ++N V H H F+ + +V+
Sbjct: 21 EFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHC 67
>pdb|3CTM|A Chain A, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|B Chain B, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|C Chain C, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|D Chain D, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|E Chain E, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|F Chain F, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|G Chain G, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|H Chain H, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
Length = 279
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 147 TWHAGPLFKADDMDFYNLELS-NTNVVDHTTHS----FKKNG 183
TW GP D+ D +N +S + N V + +H+ FKKNG
Sbjct: 122 TWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG 163
>pdb|2YDY|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit In Orthorhombic Crystal Form
Length = 315
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 142 KLNRGTWHA-GPLFKADDMDFYNLELSNTNVVDHTTHSFKKNGVVYT 187
+ + WHA G F+ F + L ++N V H H F+ + +V+
Sbjct: 21 EFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHC 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,862,180
Number of Sequences: 62578
Number of extensions: 236251
Number of successful extensions: 422
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 9
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)