BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029632
         (190 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P25293|NAP1_YEAST Nucleosome assembly protein OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=NAP1 PE=1 SV=2
          Length = 417

 Score = 36.6 bits (83), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 33  EASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTIT-HHASVTQCLGSIGGHVWY 91
           E   D EE    D++ +  +GIP F++  LEN P+   TIT   A V + L  IG  + Y
Sbjct: 164 ELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIG--LEY 221

Query: 92  LGVAKP 97
           L   +P
Sbjct: 222 LTDGRP 227


>sp|C6A048|MTAD_THESM 5-methylthioadenosine/S-adenosylhomocysteine deaminase
           OS=Thermococcus sibiricus (strain MM 739 / DSM 12597)
           GN=mtaD PE=3 SV=1
          Length = 424

 Score = 33.1 bits (74), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 117 HCGHFYVPPAIEDVRVFKIA---GPKFLKLNRGTWHAGPLFKADDMDFYNLELSN-TNVV 172
           H  H   P   +   VFK+A   G K L+LN G    G L     +DF    L   TN++
Sbjct: 317 HKVHTLNPTLADAKTVFKMATQNGAKALRLNAGVIKEGALADVIVIDFNKPHLRPITNII 376

Query: 173 DHTTHSFKKNGVVYTIDD 190
            H  +S   N V  TI D
Sbjct: 377 SHIVYSANGNDVETTIVD 394


>sp|C1DFA8|ALLA_AZOVD Ureidoglycolate hydrolase OS=Azotobacter vinelandii (strain DJ /
           ATCC BAA-1303) GN=allA PE=3 SV=1
          Length = 166

 Score = 31.2 bits (69), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 49/176 (27%)

Query: 13  VKLRAIEATAES-FKEYGQVIE------------------ASADGEEFGPQDAQLDLSRG 53
           +++ +IE  +++ F  +G+VIE                  A A+ +   P+D      R 
Sbjct: 1   MRILSIEPLSKAAFAPFGEVIETEGSDYFMINGGSTRRYHALAEVQTSAPED------RA 54

Query: 54  IPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNI 113
           I   +V      PL    +  H   +Q    + G+ + + VA P         GD     
Sbjct: 55  IVSIFVARALPMPLTIRMLERHPLGSQAFVPLRGNPFLIVVAPP---------GDA---- 101

Query: 114 VRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNT 169
                      P  E VRVF   G + +   RG WH   L   DD +F  ++ S  
Sbjct: 102 -----------PRPEQVRVFLGNGRQGVNYQRGVWHHPVLALLDDDEFLVIDRSGA 146


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,703,787
Number of Sequences: 539616
Number of extensions: 2899325
Number of successful extensions: 5626
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5625
Number of HSP's gapped (non-prelim): 3
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)