Query 029632
Match_columns 190
No_of_seqs 101 out of 393
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 16:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04115 Ureidogly_hydro: Urei 100.0 1.7E-44 3.6E-49 294.5 12.9 146 12-181 1-160 (165)
2 PRK03606 ureidoglycolate hydro 100.0 1.2E-43 2.6E-48 289.7 14.5 143 13-181 2-156 (162)
3 PRK13395 ureidoglycolate hydro 100.0 2.7E-42 5.9E-47 283.8 14.2 143 13-181 2-157 (171)
4 COG3194 DAL3 Ureidoglycolate h 100.0 2.3E-42 4.9E-47 280.7 12.1 145 12-181 1-157 (168)
5 COG3822 ABC-type sugar transpo 86.9 2.8 6E-05 36.1 6.9 102 66-177 95-196 (225)
6 PF07385 DUF1498: Protein of u 77.1 5 0.00011 34.9 5.0 100 68-177 98-197 (225)
7 PF05523 FdtA: WxcM-like, C-te 71.4 9.6 0.00021 29.8 4.9 68 68-169 44-112 (131)
8 PF07883 Cupin_2: Cupin domain 67.2 8.1 0.00018 25.5 3.3 60 70-164 11-70 (71)
9 smart00835 Cupin_1 Cupin. This 48.1 1.3E+02 0.0028 23.3 8.7 36 129-165 73-109 (146)
10 PF01050 MannoseP_isomer: Mann 40.9 63 0.0014 26.1 4.9 39 131-171 102-140 (151)
11 KOG0148 Apoptosis-promoting RN 39.0 12 0.00026 33.9 0.5 14 22-35 80-93 (321)
12 PRK13290 ectC L-ectoine syntha 27.9 1.1E+02 0.0025 23.7 4.3 32 131-164 75-106 (125)
13 COG0662 {ManC} Mannose-6-phosp 27.6 2.8E+02 0.006 21.1 8.4 72 58-165 37-109 (127)
14 PF02311 AraC_binding: AraC-li 25.0 1.2E+02 0.0025 21.6 3.7 38 131-169 41-79 (136)
15 TIGR01221 rmlC dTDP-4-dehydror 21.9 4.6E+02 0.01 21.6 8.5 32 125-157 90-123 (176)
No 1
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=100.00 E-value=1.7e-44 Score=294.46 Aligned_cols=146 Identities=25% Similarity=0.353 Sum_probs=111.1
Q ss_pred eceEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccC---CCeeeEEEEEecC--CCceeeeeccCCCC
Q 029632 12 TVKLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLS---RGIPRFYVMHLEN--RPLKFSTITHHASV 78 (190)
Q Consensus 12 ~~~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~---~g~p~~~i~~~~~--~p~~v~~lERHp~t 78 (190)
|++|+++|||+|||||||+||+..+ +|...+ +..+.++.. .|++++++++++. .|++|++|||||++
T Consensus 1 m~~i~~~pLT~eaFaPyG~vi~~~~~~~~~~n~g~a~r~~~~~~~~~~~~~~~~~~~si~~~~~~~~p~~v~~lERHp~t 80 (165)
T PF04115_consen 1 MKTIKAEPLTPEAFAPYGDVIELDDAEPFPINQGTAERFHDLAPLDFSGGEGGRPGISIFRAQPRELPFEVSMLERHPLT 80 (165)
T ss_dssp -EEEEEEE--HHHHTTTEEEE-STT--EEEETTTTEEEEEEEEEE-BSS-TTSCEEEEEEEEEBE-SSEEEEEEEE-TTB
T ss_pred CceeeeeECCHHHhccceeEEccCCCCceeccCCcceEEeccceeecccCCCCcEEEEEEEeeccCCccccceeccCCCe
Confidence 5689999999999999999999842 244333 345566653 4788999998754 67999999999999
Q ss_pred eeeeeeecCce-EEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCC
Q 029632 79 TQCLGSIGGHV-WYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKAD 157 (190)
Q Consensus 79 sQ~FiPl~~~~-~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~ 157 (190)
||+|+||++.+ |||+||+++.. ||++++|||+++++|||+|++||||++++++++
T Consensus 81 sQ~fiPl~~~~~~lvvVA~~~~~------------------------Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~ 136 (165)
T PF04115_consen 81 SQAFIPLDGSPWYLVVVAPDDDG------------------------PDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDE 136 (165)
T ss_dssp -EEEEESBS---EEEEEEESSSS-------------------------ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSS
T ss_pred eEEEEECCCCccEEEEEcCCCCC------------------------CCccceEEEEEcCCEEEEECCCceeCCccccCC
Confidence 99999999999 99999986632 999999999999999999999999999999999
Q ss_pred cccEEEEEecCCcccccceeeeec
Q 029632 158 DMDFYNLELSNTNVVDHTTHSFKK 181 (190)
Q Consensus 158 ~~dF~vle~~~~~~~d~~~~~~~~ 181 (190)
+++|+++++.+|+..||+.+.|.+
T Consensus 137 ~~~f~vv~~~~~~~~dce~~~~~~ 160 (165)
T PF04115_consen 137 PADFLVVDRIDGPGDDCEEVELDE 160 (165)
T ss_dssp EEEEEEEEEESSTS-T-EEEEEEG
T ss_pred cceEEEEeCCcCCCCCcEEEeCCC
Confidence 999999999999999999999987
No 2
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=100.00 E-value=1.2e-43 Score=289.68 Aligned_cols=143 Identities=22% Similarity=0.321 Sum_probs=123.4
Q ss_pred ceEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccC--CCeeeEEEEEecCC--CceeeeeccCCCCee
Q 029632 13 VKLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLS--RGIPRFYVMHLENR--PLKFSTITHHASVTQ 80 (190)
Q Consensus 13 ~~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~--~g~p~~~i~~~~~~--p~~v~~lERHp~tsQ 80 (190)
.+|+++|||+|||||||+||+.++ +|...+ ++.|+++.. +|+++++++|++.+ |+++++|||||++||
T Consensus 2 ~~l~~~pLT~eaFaPfG~VI~~~~~~~~~iN~G~~~r~~~la~~~~~~~~g~~~isifr~~~~~~p~~~~~mERHp~~sQ 81 (162)
T PRK03606 2 RTLQIEPLTKEAFAPFGDVIETDGADFFHINNGTTERYHDLARVEVAGEGGRALISIFRAQPRALPLEIRMLERHPLGSQ 81 (162)
T ss_pred CceeeeECCHHHcCccccEEccCCCCceeccCcceeEeecceeccccCCCCceEEEEEeCcccCCCcceeeEEeCCCceE
Confidence 469999999999999999999862 244444 456778765 46899999999765 899999999999999
Q ss_pred eeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCccc
Q 029632 81 CLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMD 160 (190)
Q Consensus 81 ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~d 160 (190)
||+||++.+|||+||+++. ++++++|||+++|+|||+|++||||++++.++.+.|
T Consensus 82 afiPl~~~~~lvvVA~~~~-------------------------~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~d 136 (162)
T PRK03606 82 AFIPLNGRPFLVVVAPDGD-------------------------GDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSD 136 (162)
T ss_pred EEEECCCCEEEEEEeCCCC-------------------------CCccceEEEEecCCcEEEeCCCcccccccccCCCce
Confidence 9999999999999998864 366899999999999999999999986677777999
Q ss_pred EEEEEecCCcccccceeeeec
Q 029632 161 FYNLELSNTNVVDHTTHSFKK 181 (190)
Q Consensus 161 F~vle~~~~~~~d~~~~~~~~ 181 (190)
|+|+++ ++.+.||+.+.|.+
T Consensus 137 F~vvdr-~g~g~ncee~~~~~ 156 (162)
T PRK03606 137 FLVVDR-GGPGDNLEEHFFPE 156 (162)
T ss_pred EEEEeC-CcCCCCceEEECCC
Confidence 999996 66899999999876
No 3
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=100.00 E-value=2.7e-42 Score=283.84 Aligned_cols=143 Identities=21% Similarity=0.296 Sum_probs=118.5
Q ss_pred ceEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccC--CCeeeEEEEEecCC--CceeeeeccCCCCee
Q 029632 13 VKLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLS--RGIPRFYVMHLENR--PLKFSTITHHASVTQ 80 (190)
Q Consensus 13 ~~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~--~g~p~~~i~~~~~~--p~~v~~lERHp~tsQ 80 (190)
.+|+++|||+|||||||+||+.+. +|...+ ++.++++.. .|++++++||++.+ |+++++|||||++||
T Consensus 2 ~~i~~~pLT~eaFaPfG~VI~~~~~~~~~iN~G~~~r~h~la~~d~~~~~g~~~isifr~~p~~~p~~i~~mERHp~~sQ 81 (171)
T PRK13395 2 KTLRAERLTREAFAPFGDVIELDGARHFPINGGTTERFHDLATIDVTGDGGRPLVSLFRAQPRALPVAITMMERHPLGSQ 81 (171)
T ss_pred CceeeeECCHHHcCccceeEecCCCCcceecCcceEEeccceeeeccCCCCceEEEEEeccccCCCcceeeEEECCCceE
Confidence 469999999999999999999762 133332 466777764 46899999998765 899999999999999
Q ss_pred eeeeecC-ceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCcc
Q 029632 81 CLGSIGG-HVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDM 159 (190)
Q Consensus 81 ~FiPl~~-~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~ 159 (190)
||+||++ .+|+||||+++ + ++++++|||+++|+|||+|++||||+++++++.+.
T Consensus 82 afiPl~~~~~~lvVvap~~-~------------------------~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~ 136 (171)
T PRK13395 82 AFIPLAAVSRYAVVVAPAG-E------------------------FRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVS 136 (171)
T ss_pred EEEECCCCCCEEEEEccCC-C------------------------CCCCceEEEEecCCcEEEeCCCcccccccccCCCc
Confidence 9999999 66666666533 2 34457999999999999999999999888888899
Q ss_pred cEEEEEecCCcccccceeeeec
Q 029632 160 DFYNLELSNTNVVDHTTHSFKK 181 (190)
Q Consensus 160 dF~vle~~~~~~~d~~~~~~~~ 181 (190)
||+|+++ ++.+.||+.+.|.+
T Consensus 137 dF~vvdr-~g~~~nc~e~~~~~ 157 (171)
T PRK13395 137 DFVVVDR-GGPQPNCDEIPLDT 157 (171)
T ss_pred cEEEEeC-CcCCCCceEEECCC
Confidence 9999985 56899999999976
No 4
>COG3194 DAL3 Ureidoglycolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.3e-42 Score=280.71 Aligned_cols=145 Identities=20% Similarity=0.260 Sum_probs=119.5
Q ss_pred eceEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccCC--CeeeEEEEEecC--CCceeeeeccCCCCe
Q 029632 12 TVKLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLSR--GIPRFYVMHLEN--RPLKFSTITHHASVT 79 (190)
Q Consensus 12 ~~~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~~--g~p~~~i~~~~~--~p~~v~~lERHp~ts 79 (190)
+.+|+++|||+|||||||+||+..+ .|+..+ ++.++++.+. .++.+.++|++. .|+.|++|||||++|
T Consensus 1 m~~l~~~pLT~EaFapfGdVIe~~~~~~~~iN~G~~~ryh~la~vE~~g~~~r~linifr~~p~~~p~~I~~lERHP~gS 80 (168)
T COG3194 1 MKTLTARPLTKEAFAPFGDVIETDQAKMFHINGGTAERYHDLARVEAAGEDARTLINIFRAQPAVHPLTISMLERHPLGS 80 (168)
T ss_pred CceeeeeccchhhhccccccccccccceeeecCchhhhhhhhhhhhhcCCCcceEEEEeecccCcCCceeeEEeecCCcc
Confidence 3589999999999999999999763 244444 3445554432 367788888765 588999999999999
Q ss_pred eeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCcc
Q 029632 80 QCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDM 159 (190)
Q Consensus 80 Q~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~ 159 (190)
|+|+||++.+||||||+.+.. ||++++|||++.|+|||||++|||||+++.+....
T Consensus 81 QaFiPl~~~~fLVVVA~~~~~------------------------pd~~~~rAF~a~g~QgVnY~rnvWH~pl~~l~~~~ 136 (168)
T COG3194 81 QAFIPLSGRPFLVVVAPDGGK------------------------PDPSTPRAFIANGRQGVNYHRNVWHHPLTPLGKVT 136 (168)
T ss_pred eeeeecCCCeEEEEEEcCCCC------------------------CCCCceeEEEecCccceeeccceeccceecccccc
Confidence 999999999999999988632 89999999999999999999999998777777799
Q ss_pred cEEEEEecCCcccccceeeeec
Q 029632 160 DFYNLELSNTNVVDHTTHSFKK 181 (190)
Q Consensus 160 dF~vle~~~~~~~d~~~~~~~~ 181 (190)
||+++++. +.+.|.+.+.+.+
T Consensus 137 dF~vvdr~-G~g~n~ee~~~~e 157 (168)
T COG3194 137 DFLVVDRE-GSGNNLEEYFFEE 157 (168)
T ss_pred eEEEEEec-CCCCCcccccccc
Confidence 99999998 7677776665554
No 5
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=86.92 E-value=2.8 Score=36.11 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=60.9
Q ss_pred CceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecC
Q 029632 66 PLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNR 145 (190)
Q Consensus 66 p~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~ 145 (190)
+=.++-|-||+.-..=++--++..+++=.-..+.++ .+++.+.- +| +.-|-- -....=--.+..|||.|++-+
T Consensus 95 ~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~-~~~~ks~v--tv-~~dg~r---~~~~ag~~lkL~PGesitL~P 167 (225)
T COG3822 95 PGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVE-GQDEKSDV--TV-PVDGCR---QTHTAGSQLKLSPGESITLPP 167 (225)
T ss_pred cCCcCcccccccchhhhhhcCCceEEEEEecccccc-CcCCCCCe--Ee-cCCCcE---EEeccceeEEECCCCcEecCC
Confidence 335677899998777777777777655554443321 23333221 11 111100 001111235689999999999
Q ss_pred CCCCCCcccCCCcccEEEEEecCCccccccee
Q 029632 146 GTWHAGPLFKADDMDFYNLELSNTNVVDHTTH 177 (190)
Q Consensus 146 GtWHa~pl~~~~~~dF~vle~~~~~~~d~~~~ 177 (190)
|+||+ +-.+..+-++-|-+..|..+|+.+
T Consensus 168 g~~Hs---Fwae~g~vlvgEvSsvndD~hDn~ 196 (225)
T COG3822 168 GLYHS---FWAEEGGVLVGEVSSVNDDLHDNI 196 (225)
T ss_pred Cceee---eeecCCcEEEEEEeeccCccccch
Confidence 99996 334445567779999998888854
No 6
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=77.09 E-value=5 Score=34.93 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=51.3
Q ss_pred eeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCC
Q 029632 68 KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGT 147 (190)
Q Consensus 68 ~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~Gt 147 (190)
.++-|=+|..-.+-+|--++...+|-|..++.++ .. +..+.+.-..-|.-+..|.=+. -+..+||.|++-+|+
T Consensus 98 Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~-~~---~~~~~v~V~~DG~~~t~~aG~~---l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 98 QVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDG-EL---DADTDVTVPVDGIRRTVPAGTQ---LRLNPGESITLPPGI 170 (225)
T ss_dssp -EEEEEEESS--EEEEEEEES-EEEEEEEB--TT-SS---B-SS-EEEEETTEEEEE-TT-E---EEE-TT-EEEE-TTE
T ss_pred CcCCcccCcchhhheeecCCceEEEEEEeccCCC-cc---ccCCCeEEecCCcEEEecCCce---EEeCCCCeEeeCCCC
Confidence 4566789999999999998887667676555321 11 1111111122233333332223 467999999999999
Q ss_pred CCCCcccCCCcccEEEEEecCCccccccee
Q 029632 148 WHAGPLFKADDMDFYNLELSNTNVVDHTTH 177 (190)
Q Consensus 148 WHa~pl~~~~~~dF~vle~~~~~~~d~~~~ 177 (190)
||.. - .+..+-++=|.+..|..+.+.+
T Consensus 171 yH~F--w-~e~g~vLigEVStvNDD~tDN~ 197 (225)
T PF07385_consen 171 YHWF--W-GEGGDVLIGEVSTVNDDNTDNR 197 (225)
T ss_dssp EEEE--E-E-TTSEEEEEEEE---TTTSEE
T ss_pred eeeE--E-ecCCCEEEEeeecccCCCcccc
Confidence 9962 2 2344455668888887766654
No 7
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=71.44 E-value=9.6 Score=29.84 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=35.4
Q ss_pred eeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEe-CCeeEEecCC
Q 029632 68 KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIA-GPKFLKLNRG 146 (190)
Q Consensus 68 ~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~-ggqgV~y~~G 146 (190)
.++-.=+|...+|.|+.+.|. +.|.+- .+. .-+-|+.. +.+++.+-+|
T Consensus 44 ~~RG~H~Hk~~~~~~~~l~Gs-~~v~~~-d~~-----------------------------~~~~~~L~~~~~~L~Ippg 92 (131)
T PF05523_consen 44 VIRGWHAHKKTTQWFIVLSGS-FKVVLD-DGR-----------------------------EEEEFILDEPNKGLYIPPG 92 (131)
T ss_dssp --EEEEEESS--EEEEEEES--EEEEEE--SS------------------------------EEEEEE--TTEEEEE-TT
T ss_pred CcccccccccccEEEEEEeCE-EEEEEe-cCC-----------------------------CcEEEEECCCCeEEEECCc
Confidence 347788999999999999875 344321 211 11455554 4589999999
Q ss_pred CCCCCcccCCCcccEEEEEecCC
Q 029632 147 TWHAGPLFKADDMDFYNLELSNT 169 (190)
Q Consensus 147 tWHa~pl~~~~~~dF~vle~~~~ 169 (190)
+||. ..-..+. -++|.+++.
T Consensus 93 ~w~~-~~~~s~~--svlLv~as~ 112 (131)
T PF05523_consen 93 VWHG-IKNFSED--SVLLVLASE 112 (131)
T ss_dssp -EEE-EE---TT---EEEEEESS
T ss_pred hhhH-hhccCCC--cEEEEEcCC
Confidence 9995 4333332 344455554
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=67.19 E-value=8.1 Score=25.53 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=41.2
Q ss_pred eeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCC
Q 029632 70 STITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWH 149 (190)
Q Consensus 70 ~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWH 149 (190)
....+|+...|.+.-+.+.- .+.+ .+ +.+.+.+|+.+.+.+|+||
T Consensus 11 ~~~h~H~~~~e~~~vl~G~~-~~~~--~~--------------------------------~~~~l~~Gd~~~i~~~~~H 55 (71)
T PF07883_consen 11 IPPHRHPGEDEFFYVLSGEG-TLTV--DG--------------------------------ERVELKPGDAIYIPPGVPH 55 (71)
T ss_dssp EEEEEESSEEEEEEEEESEE-EEEE--TT--------------------------------EEEEEETTEEEEEETTSEE
T ss_pred CCCEECCCCCEEEEEEECCE-EEEE--cc--------------------------------EEeEccCCEEEEECCCCeE
Confidence 34678888889888888763 2222 21 1578899999999999999
Q ss_pred CCcccCCCcccEEEE
Q 029632 150 AGPLFKADDMDFYNL 164 (190)
Q Consensus 150 a~pl~~~~~~dF~vl 164 (190)
..--...+++.|+++
T Consensus 56 ~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 56 QVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEEESSSEEEEEEE
T ss_pred EEEECCCCCEEEEEE
Confidence 632222346777654
No 9
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=48.08 E-value=1.3e+02 Score=23.28 Aligned_cols=36 Identities=11% Similarity=0.240 Sum_probs=26.4
Q ss_pred CeEEEEEeCCeeEEecCCCCCCCcccCC-CcccEEEEE
Q 029632 129 DVRVFKIAGPKFLKLNRGTWHAGPLFKA-DDMDFYNLE 165 (190)
Q Consensus 129 ~lrAF~~~ggqgV~y~~GtWHa~pl~~~-~~~dF~vle 165 (190)
.-+.+.+..|+.+.+.+|+||. ..... +...|+++.
T Consensus 73 ~~~~~~l~~GD~~~ip~g~~H~-~~n~~~~~~~~l~~~ 109 (146)
T smart00835 73 KVYDARLREGDVFVVPQGHPHF-QVNSGDENLEFVAFN 109 (146)
T ss_pred eEEEEEecCCCEEEECCCCEEE-EEcCCCCCEEEEEEe
Confidence 5678999999999999999995 33333 255665544
No 10
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=40.87 E-value=63 Score=26.10 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=29.0
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEecCCcc
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNV 171 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~~~~ 171 (190)
+.+.+..|+.|.+.+|++|. +-.........+|..-++.
T Consensus 102 ~~~~~~~g~sv~Ip~g~~H~--i~n~g~~~L~~IEVq~G~~ 140 (151)
T PF01050_consen 102 EEFTLKEGDSVYIPRGAKHR--IENPGKTPLEIIEVQTGEY 140 (151)
T ss_pred EEEEEcCCCEEEECCCCEEE--EECCCCcCcEEEEEecCCC
Confidence 67889999999999999994 4333345566677766654
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=39.02 E-value=12 Score=33.92 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=11.8
Q ss_pred hhhccCCcceEeeC
Q 029632 22 AESFKEYGQVIEAS 35 (190)
Q Consensus 22 ~eaFAPfG~VI~~~ 35 (190)
+|||+|||+|-++.
T Consensus 80 r~aF~pFGevS~ak 93 (321)
T KOG0148|consen 80 REAFAPFGEVSDAK 93 (321)
T ss_pred HHHhccccccccce
Confidence 68999999987663
No 12
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=27.93 E-value=1.1e+02 Score=23.71 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=23.8
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCCcccEEEE
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vl 164 (190)
+.+.+.+|+.+.+.++.+|. .... +...|+++
T Consensus 75 ~~~~L~aGD~i~~~~~~~H~-~~N~-e~~~~l~v 106 (125)
T PRK13290 75 EVHPIRPGTMYALDKHDRHY-LRAG-EDMRLVCV 106 (125)
T ss_pred EEEEeCCCeEEEECCCCcEE-EEcC-CCEEEEEE
Confidence 45788999999999999995 3333 55666655
No 13
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.57 E-value=2.8e+02 Score=21.10 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=45.8
Q ss_pred EEEEecCCCceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeC
Q 029632 58 YVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAG 137 (190)
Q Consensus 58 ~i~~~~~~p~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~g 137 (190)
.+.+..-.|-.-..++.|....|.|+-+.+.- .|.+. + +.|.+..
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g-~v~~~--~--------------------------------~~~~v~~ 81 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTG-KVTIG--G--------------------------------EEVEVKA 81 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEE-EEEEC--C--------------------------------EEEEecC
Confidence 33333333333336888999999998887654 33332 1 3578899
Q ss_pred CeeEEecCCCCCCCcccCCC-cccEEEEE
Q 029632 138 PKFLKLNRGTWHAGPLFKAD-DMDFYNLE 165 (190)
Q Consensus 138 gqgV~y~~GtWHa~pl~~~~-~~dF~vle 165 (190)
||.+..-+|++|- ..-.+. +..|+.+.
T Consensus 82 gd~~~iP~g~~H~-~~N~G~~~L~liei~ 109 (127)
T COG0662 82 GDSVYIPAGTPHR-VRNTGKIPLVLIEVQ 109 (127)
T ss_pred CCEEEECCCCcEE-EEcCCCcceEEEEEe
Confidence 9999999999994 333333 44555544
No 14
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=24.96 E-value=1.2e+02 Score=21.59 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=23.3
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCC-cccEEEEEecCC
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKAD-DMDFYNLELSNT 169 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~-~~dF~vle~~~~ 169 (190)
+-+.+.+|+.+-+.+|..|. .....+ ...++++-+...
T Consensus 41 ~~~~l~~g~~~li~p~~~H~-~~~~~~~~~~~~~i~~~~~ 79 (136)
T PF02311_consen 41 QEYPLKPGDLFLIPPGQPHS-YYPDSNEPWEYYWIYFSPD 79 (136)
T ss_dssp EEEEE-TT-EEEE-TTS-EE-EEE-TTSEEEEEEEEE---
T ss_pred EEEEEECCEEEEecCCccEE-EecCCCCCEEEEEEEECHH
Confidence 45899999999999999996 444443 777778776655
No 15
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=21.85 E-value=4.6e+02 Score=21.64 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=25.6
Q ss_pred CCCCCeEEEEEeC--CeeEEecCCCCCCCcccCCC
Q 029632 125 PAIEDVRVFKIAG--PKFLKLNRGTWHAGPLFKAD 157 (190)
Q Consensus 125 Pdl~~lrAF~~~g--gqgV~y~~GtWHa~pl~~~~ 157 (190)
|.-....+++..+ ++.|.+-+|+||. =.++.+
T Consensus 90 pTfG~~~~~~L~~~~~~~l~IP~G~aHG-F~~L~d 123 (176)
T TIGR01221 90 PTFGKWVGVLLSAENKRQLWIPEGFAHG-FVVLSD 123 (176)
T ss_pred CCCCeEEEEEECCCCCCEEEeCCcceeE-EEEcCC
Confidence 7778899999998 6699999999995 444444
Done!