Query 029632
Match_columns 190
No_of_seqs 101 out of 393
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 02:36:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xsq_A Ureidoglycolate hydrola 100.0 6.7E-45 2.3E-49 297.2 11.7 142 14-181 2-154 (168)
2 2bdr_A Ureidoglycolate hydrola 100.0 1.5E-44 5.1E-49 296.9 13.6 144 13-181 2-157 (175)
3 3d0j_A Uncharacterized protein 94.5 0.081 2.8E-06 41.7 6.4 81 66-175 38-118 (140)
4 2pa7_A DTDP-6-deoxy-3,4-keto-h 89.7 0.6 2.1E-05 36.3 5.7 69 68-169 46-114 (141)
5 3ejk_A DTDP sugar isomerase; Y 84.9 3.8 0.00013 32.7 7.9 73 67-164 63-139 (174)
6 1nxm_A DTDP-6-deoxy-D-XYLO-4-h 75.6 12 0.00041 30.5 8.0 70 68-164 71-141 (197)
7 3kmh_A D-lyxose isomerase; cup 75.3 11 0.00039 31.9 8.0 101 67-177 116-217 (246)
8 2fqp_A Hypothetical protein BP 71.3 4.5 0.00015 27.8 3.9 38 131-168 59-96 (97)
9 1fi2_A Oxalate oxidase, germin 70.6 28 0.00096 27.2 9.0 85 57-168 72-156 (201)
10 2ixk_A DTDP-4-dehydrorhamnose 70.2 25 0.00085 28.1 8.6 72 68-164 60-135 (184)
11 1ep0_A DTDP-6-deoxy-D-XYLO-4-h 69.7 26 0.0009 28.0 8.6 72 68-164 59-134 (185)
12 3lag_A Uncharacterized protein 68.7 9.3 0.00032 26.8 5.2 82 56-169 16-97 (98)
13 1dzr_A DTDP-4-dehydrorhamnose 66.8 33 0.0011 27.3 8.6 72 68-164 58-134 (183)
14 1oi6_A PCZA361.16; epimerase, 61.6 46 0.0016 27.0 8.8 73 67-164 57-134 (205)
15 2gu9_A Tetracenomycin polyketi 60.3 17 0.00057 24.6 5.1 37 132-168 63-99 (113)
16 1wlt_A 176AA long hypothetical 60.2 37 0.0013 27.5 7.9 74 66-164 74-152 (196)
17 3ryk_A DTDP-4-dehydrorhamnose 60.2 38 0.0013 27.6 8.0 73 67-164 80-157 (205)
18 2vqa_A SLL1358 protein, MNCA; 59.2 55 0.0019 27.4 9.2 66 71-167 248-314 (361)
19 2c0z_A NOVW; isomerase, epimer 57.7 50 0.0017 27.2 8.3 72 68-164 66-142 (216)
20 1upi_A DTDP-4-dehydrorhamnose 54.5 65 0.0022 26.6 8.6 73 67-164 76-153 (225)
21 2ozi_A Hypothetical protein RP 54.1 7.5 0.00026 27.6 2.4 38 132-169 60-97 (98)
22 2y0o_A Probable D-lyxose ketol 53.9 82 0.0028 25.0 9.0 95 64-175 60-160 (175)
23 3ht1_A REMF protein; cupin fol 53.9 21 0.00071 25.5 4.9 39 131-170 79-118 (145)
24 3d82_A Cupin 2, conserved barr 53.2 12 0.00041 25.0 3.3 33 132-166 69-101 (102)
25 1v70_A Probable antibiotics sy 52.1 16 0.00056 24.0 3.8 34 131-165 67-101 (105)
26 3cew_A Uncharacterized cupin p 44.6 30 0.001 24.3 4.5 39 131-169 66-104 (125)
27 2i45_A Hypothetical protein; n 43.6 15 0.00053 25.1 2.7 36 132-169 68-103 (107)
28 4i4a_A Similar to unknown prot 43.0 32 0.0011 24.0 4.4 35 132-167 73-108 (128)
29 3h8u_A Uncharacterized conserv 41.3 29 0.00099 24.3 3.9 33 132-165 80-113 (125)
30 1vj2_A Novel manganese-contain 40.8 32 0.0011 24.4 4.1 36 132-167 87-122 (126)
31 1j58_A YVRK protein; cupin, de 40.7 91 0.0031 26.4 7.7 37 131-167 301-337 (385)
32 3jzv_A Uncharacterized protein 39.3 28 0.00094 26.9 3.8 36 132-167 92-127 (166)
33 2vqa_A SLL1358 protein, MNCA; 39.0 1.4E+02 0.0049 24.8 8.5 66 69-165 64-130 (361)
34 3kgz_A Cupin 2 conserved barre 38.2 45 0.0015 25.3 4.8 38 132-169 83-120 (156)
35 1yhf_A Hypothetical protein SP 34.9 62 0.0021 21.9 4.8 34 132-167 79-112 (115)
36 3ibm_A Cupin 2, conserved barr 33.4 38 0.0013 25.8 3.7 37 132-168 95-132 (167)
37 1o4t_A Putative oxalate decarb 31.1 58 0.002 23.3 4.2 35 131-165 96-130 (133)
38 3ic3_A Putative pyruvate dehyd 30.8 29 0.00099 25.7 2.4 22 127-149 23-44 (101)
39 3fz3_A Prunin; TREE NUT allerg 30.1 1E+02 0.0035 28.8 6.5 67 68-164 405-471 (531)
40 2oa2_A BH2720 protein; 1017534 29.5 45 0.0015 24.4 3.4 65 72-165 58-122 (148)
41 4e2g_A Cupin 2 conserved barre 28.8 68 0.0023 22.2 4.1 32 132-164 80-111 (126)
42 2b8m_A Hypothetical protein MJ 27.6 58 0.002 22.4 3.6 34 134-168 69-103 (117)
43 1lr5_A Auxin binding protein 1 26.5 1.9E+02 0.0065 21.1 8.8 39 128-167 85-125 (163)
44 2ozj_A Cupin 2, conserved barr 26.1 64 0.0022 22.0 3.6 35 131-167 76-110 (114)
45 4hn1_A Putative 3-epimerase in 25.2 2.7E+02 0.0093 22.5 8.0 39 125-164 91-131 (201)
46 2jsh_A Appetite-regulating hor 25.1 11 0.00039 21.4 -0.5 17 18-34 9-25 (26)
47 2o8q_A Hypothetical protein; c 24.8 67 0.0023 22.6 3.5 33 131-164 83-115 (134)
48 1j58_A YVRK protein; cupin, de 24.7 1.8E+02 0.0063 24.5 6.9 32 131-163 122-153 (385)
49 2xlg_A SLL1785 protein, CUCA; 24.1 1.5E+02 0.0051 24.2 5.9 89 56-161 42-132 (239)
50 3l2h_A Putative sugar phosphat 24.0 76 0.0026 23.3 3.8 36 131-166 86-122 (162)
51 2pfw_A Cupin 2, conserved barr 23.0 88 0.003 21.2 3.7 32 132-165 73-104 (116)
52 2d5f_A Glycinin A3B4 subunit; 22.8 1.7E+02 0.0058 26.7 6.5 72 69-170 379-450 (493)
53 1dgw_A Canavalin; duplicated s 21.9 2.6E+02 0.009 21.1 9.3 58 75-164 58-117 (178)
54 2ea7_A 7S globulin-1; beta bar 21.2 4E+02 0.014 23.6 8.6 91 57-168 266-358 (434)
55 2arc_A ARAC, arabinose operon 20.3 1.2E+02 0.0042 21.4 4.3 38 131-169 56-95 (164)
No 1
>1xsq_A Ureidoglycolate hydrolase; northeast structural genomics consortium, NESG, structural genomics, protein structure initiative, PSI, ET81, X-RAY; 1.60A {Escherichia coli} SCOP: b.82.1.14 PDB: 1xsr_A 1yqc_A
Probab=100.00 E-value=6.7e-45 Score=297.23 Aligned_cols=142 Identities=21% Similarity=0.321 Sum_probs=121.4
Q ss_pred eEEEeeCChhhccCCcceEeeCC-------CCCccC-ccccccccCCC-eeeEEEEEecCC--CceeeeeccCCCCeeee
Q 029632 14 KLRAIEATAESFKEYGQVIEASA-------DGEEFG-PQDAQLDLSRG-IPRFYVMHLENR--PLKFSTITHHASVTQCL 82 (190)
Q Consensus 14 ~I~a~pLT~eaFAPfG~VI~~~~-------~g~~~~-~~~a~l~~~~g-~p~~~i~~~~~~--p~~v~~lERHp~tsQ~F 82 (190)
+|+++|||+|||||||+||+.++ +|...+ +++|++++.++ ++++++|+++.+ |++|++|||||++||||
T Consensus 2 ~l~~~pLT~eaFapfG~vI~~~~~~~~~~N~G~~~r~~~~a~ld~~~~~~~~i~ifr~~~r~~p~~v~~lERHp~~sQaf 81 (168)
T 1xsq_A 2 KLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQPANLPLTIHELERHPLGTQAF 81 (168)
T ss_dssp EEEEEECCHHHHTTTEEEECCTTCCCEEC----CEEEEEEEEECBSSCSCEEEEEEEECBCCSSCEEEEEEECTTBCEEE
T ss_pred ceeeeECCHHHcCCceeEEccCCCCcccccCCcceEeccceeEecCCCCceEEEEEEecCCCCCceeeEEeeCCCCceEE
Confidence 68999999999999999999763 233333 46788888764 899999999988 99999999999999999
Q ss_pred eeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCcccEE
Q 029632 83 GSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFY 162 (190)
Q Consensus 83 iPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~ 162 (190)
+||++.+|||+||+++.. ||++++|||+++|+|||||++||||++++.+.+.+||+
T Consensus 82 iPl~~~~~lVvVA~~~~~------------------------Pd~~~lrAF~~~ggqgV~y~~GtWH~pl~~l~~~~~F~ 137 (168)
T 1xsq_A 82 IPMKGEVFVVVVALGDDK------------------------PDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFL 137 (168)
T ss_dssp EESBCCCCEEEEEECSSS------------------------CEEEEEEEEECCSSCEEEECTTCEECCCCBSSSCEEEE
T ss_pred EECCCCEEEEEEeCCCCC------------------------CChhheEEEEecCCeEEEeCCCceecccccCCCcceEE
Confidence 999999999999977432 99999999999999999999999999666666789999
Q ss_pred EEEecCCcccccceeeeec
Q 029632 163 NLELSNTNVVDHTTHSFKK 181 (190)
Q Consensus 163 vle~~~~~~~d~~~~~~~~ 181 (190)
++++.+. . ||+.+.|.+
T Consensus 138 vvdr~g~-~-dc~e~~~~~ 154 (168)
T 1xsq_A 138 TIDRGGS-D-NCDVESIPE 154 (168)
T ss_dssp EEECC---C-CCEEEEEEE
T ss_pred EEeccCC-C-CcEEEECCC
Confidence 9997655 4 999999877
No 2
>2bdr_A Ureidoglycolate hydrolase; all beta protein, structural genomics, PSI, protein structur initiative, northeast structural genomics consortium; 1.60A {Pseudomonas putida} SCOP: b.82.1.14
Probab=100.00 E-value=1.5e-44 Score=296.89 Aligned_cols=144 Identities=22% Similarity=0.327 Sum_probs=122.6
Q ss_pred ceEEEeeCChhhccCCcceEeeCCC-------CCccC-ccccccccCCC--eeeEEEEEecC--CCceeeeeccCCCCee
Q 029632 13 VKLRAIEATAESFKEYGQVIEASAD-------GEEFG-PQDAQLDLSRG--IPRFYVMHLEN--RPLKFSTITHHASVTQ 80 (190)
Q Consensus 13 ~~I~a~pLT~eaFAPfG~VI~~~~~-------g~~~~-~~~a~l~~~~g--~p~~~i~~~~~--~p~~v~~lERHp~tsQ 80 (190)
++|+++|||+|||||||+||+.++. |...+ +++|++++.++ ++.+++|+++. +|++|++|||||++||
T Consensus 2 ~~l~~~pLT~eaFaPfG~VI~~~~~~~~~~N~G~~~r~~~~a~ld~~~~~~r~~isifr~~~r~~p~~v~~lERHp~~sQ 81 (175)
T 2bdr_A 2 RTLMIEPLTKEAFAQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRADAQDMPLTVRMLERHPLGSQ 81 (175)
T ss_dssp EECCEEECCHHHHTTTEEEECSTTCCCEEEGGGTEEEEEEEEEECBSSTTCEEEEEEEEEECCCSSEEECEEEECTTBCE
T ss_pred CceeeeECCHHHhCCcceEEccCCCCcccccCcceeEecccceEEecCCCcccEEEEEEccccCCCceeeEEeeCCCCce
Confidence 4699999999999999999997622 33222 45788887654 67799999954 5999999999999999
Q ss_pred eeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCcccCCCccc
Q 029632 81 CLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMD 160 (190)
Q Consensus 81 ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~~~~~~d 160 (190)
||+||++.+|||+||++++ . ||++++|||+++|+|||||++||||++++.+.+.+|
T Consensus 82 afiPl~~~~~lVvVAp~~~----~--------------------Pd~~~lrAF~~~ggqgV~y~~GtWH~pl~~l~~~~d 137 (175)
T 2bdr_A 82 AFIPLLGNPFLIVVAPVGD----A--------------------PVSGLVRAFRSNGRQGVNYHRGVWHHPVLTIEKRDD 137 (175)
T ss_dssp EEEESSCCCEEEEEECSSS----S--------------------CCGGGCEEEEECSSCEEEECTTCEECSCEESSSEEE
T ss_pred EEEECCCCEEEEEEeCCCC----C--------------------CCccceEEEEeCCCeEEEeCCCceecccccCCCCce
Confidence 9999999999999996432 2 999999999999999999999999976666666999
Q ss_pred EEEEEecCCcccccceeeeec
Q 029632 161 FYNLELSNTNVVDHTTHSFKK 181 (190)
Q Consensus 161 F~vle~~~~~~~d~~~~~~~~ 181 (190)
|+|+++.+. +.||+.+.|.+
T Consensus 138 F~vvdr~g~-~~dc~e~~~~~ 157 (175)
T 2bdr_A 138 FLVVDRSGS-GNNCDEHYFTE 157 (175)
T ss_dssp EEEEEEECS-SCCCEEEECCG
T ss_pred EEEEEcCCC-CCCCEEEECCC
Confidence 999999864 69999999976
No 3
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=94.54 E-value=0.081 Score=41.68 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=61.0
Q ss_pred CceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecC
Q 029632 66 PLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNR 145 (190)
Q Consensus 66 p~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~ 145 (190)
.=.++.|++|+-+-..|+-+.+.- .+..+..+. +....++....+|+..+..+
T Consensus 38 ~~~i~~~h~H~~tDE~Fivl~G~l-~i~~rd~~~--------------------------~~~~d~~V~l~~Ge~yvVPk 90 (140)
T 3d0j_A 38 IEGIAHLEIHHSTDEQFILSAGKA-ILITAEKEN--------------------------DKFNIELTLMEKGKVYNVPA 90 (140)
T ss_dssp TTTCCEEEEESSCCEEEEEEESCE-EEEEEEEET--------------------------TEEEEEEEECCTTCCEEECT
T ss_pred cccCHhhccCCCCCeEEEEEecEE-EEEEecCcC--------------------------CCCccceEEecCCCEEEeCC
Confidence 346889999999999999998764 455553211 12456889999999999999
Q ss_pred CCCCCCcccCCCcccEEEEEecCCcccccc
Q 029632 146 GTWHAGPLFKADDMDFYNLELSNTNVVDHT 175 (190)
Q Consensus 146 GtWHa~pl~~~~~~dF~vle~~~~~~~d~~ 175 (190)
|||| -|.+. +.+..+.+|-++|-..+-+
T Consensus 91 GveH-~p~a~-~e~~vLLiEp~nTGd~~se 118 (140)
T 3d0j_A 91 ECWF-YSITQ-KDTKMMYVQDSNCSMDNSD 118 (140)
T ss_dssp TCEE-EEEEC-TTCEEEEEEESCCCGGGEE
T ss_pred CccC-cccCC-CceEEEEEEeCCCCCCCCc
Confidence 9999 46664 4678899999877555543
No 4
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=89.74 E-value=0.6 Score=36.26 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=44.8
Q ss_pred eeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCC
Q 029632 68 KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGT 147 (190)
Q Consensus 68 ~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~Gt 147 (190)
.++--=||....|.|+.+.+.- -|++ .+. . . .-+.++-.+.+|+.+-+|+
T Consensus 46 ~~RG~H~Hk~~~q~li~l~Gs~-~v~l--dDg----~--------------------~---~~~~~L~~~~~gL~Ippgv 95 (141)
T 2pa7_A 46 EPRGFHAHKKLEQVLVCLNGSC-RVIL--DDG----N--------------------I---IQEITLDSPAVGLYVGPAV 95 (141)
T ss_dssp CCEEEEEESSCCEEEEEEESCE-EEEE--ECS----S--------------------C---EEEEEECCTTEEEEECTTC
T ss_pred CEECcCcCCCceEEEEEEccEE-EEEE--ECC----c--------------------E---EEEEEECCCCcEEEeCCCE
Confidence 4566678999999999998753 3433 211 1 1 2334455678999999999
Q ss_pred CCCCcccCCCcccEEEEEecCC
Q 029632 148 WHAGPLFKADDMDFYNLELSNT 169 (190)
Q Consensus 148 WHa~pl~~~~~~dF~vle~~~~ 169 (190)
||. .....+.+ +.++++++
T Consensus 96 Wh~-~~~~s~~a--vllvlas~ 114 (141)
T 2pa7_A 96 WHE-MHDFSSDC--VMMVLASD 114 (141)
T ss_dssp EEE-EECCCTTC--EEEEEESS
T ss_pred EEE-EEEcCCCe--EEEEECCC
Confidence 995 65555433 34455554
No 5
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}
Probab=84.91 E-value=3.8 Score=32.74 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=52.1
Q ss_pred ceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEe---CCeeEEe
Q 029632 67 LKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIA---GPKFLKL 143 (190)
Q Consensus 67 ~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~---ggqgV~y 143 (190)
=.++-+=+|....|.+.-+.+.-+.++|=.-.. .|.-.....|..+ ..+++-+
T Consensus 63 GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~------------------------SpTfg~~~~v~Ls~~~n~~~L~I 118 (174)
T 3ejk_A 63 RRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREK------------------------SPTSGRLAQVTLGRPDNYRLLRI 118 (174)
T ss_dssp TCEEEEEEESSCCEEEEEEESEEEEEEECCCTT------------------------CTTTTCEEEEEEETTTBCEEEEE
T ss_pred CCEECcEecCCCceEEEEEeeEEEEEEEeCCCC------------------------CCCCCeEEEEEECCccCceEEEe
Confidence 367778788778888888887665554422111 1777789999998 6799999
Q ss_pred cCCCCCCCcccCCC-cccEEEE
Q 029632 144 NRGTWHAGPLFKAD-DMDFYNL 164 (190)
Q Consensus 144 ~~GtWHa~pl~~~~-~~dF~vl 164 (190)
-+|+||. ...+.+ .+.++++
T Consensus 119 P~G~aHg-f~~lsd~~av~ly~ 139 (174)
T 3ejk_A 119 PPQVWYG-FAATGDTPALVANC 139 (174)
T ss_dssp CTTCEEE-EEECTTSCEEEEEE
T ss_pred CCCcEEE-EEEccCCCEEEEEE
Confidence 9999994 665655 5665555
No 6
>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*
Probab=75.59 E-value=12 Score=30.48 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=49.9
Q ss_pred eeeeeccCCCCeeeeeeec-CceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCC
Q 029632 68 KFSTITHHASVTQCLGSIG-GHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRG 146 (190)
Q Consensus 68 ~v~~lERHp~tsQ~FiPl~-~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~G 146 (190)
.++-|=.|+ -.|.+.-+. +.-+-|+|=.- .+ |.-.+..++..+..+++-+-+|
T Consensus 71 vlRGlH~h~-q~Klv~~~~~G~v~dV~VDlR-~S------------------------pTfg~~~~v~Ls~~~~L~IP~G 124 (197)
T 1nxm_A 71 VLRGLHAEP-WDKYISVADGGKVLGTWVDLR-EG------------------------ETFGNTYQTVIDASKSIFVPRG 124 (197)
T ss_dssp BEEEEEECS-SCEEEEECSSCCEEEEEEECB-SS------------------------TTTTCEEEEEECTTEEEEECTT
T ss_pred Ccceeeecc-cceEEEEcCCCEEEEEEEECC-CC------------------------CCCCeEEEEEeCCCcEEEeCCC
Confidence 455565674 447777777 66565655433 22 7778899999999999999999
Q ss_pred CCCCCcccCCCcccEEEE
Q 029632 147 TWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 147 tWHa~pl~~~~~~dF~vl 164 (190)
+|| +...+.+.+.++++
T Consensus 125 ~aH-gf~~lsd~a~~~y~ 141 (197)
T 1nxm_A 125 VAN-GFQVLSDFVAYSYL 141 (197)
T ss_dssp EEE-EEEECSSEEEEEEE
T ss_pred eEE-EEEeccCCeEEEEE
Confidence 999 46666665665554
No 7
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=75.28 E-value=11 Score=31.94 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=61.1
Q ss_pred ceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCC
Q 029632 67 LKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRG 146 (190)
Q Consensus 67 ~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~G 146 (190)
-.+.-|=+|+.=.+.|+--++...+|-+-.++.++ . .++. ...-...|.-+..|.=. --+..+||.|++-+|
T Consensus 116 gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~--~--~~~~-~v~V~~DG~~~~~~aG~---~i~L~PGESiTl~Pg 187 (246)
T 3kmh_A 116 AQVTPMHFHWRKREDIINRGGGNLIVELWNADSNE--Q--TADS-DITVVIDGCRQKHTAGS---QLRLSPGESICLPPG 187 (246)
T ss_dssp TCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTS--S--BCCS-CEEEEETTEEEEECTTC---EEEECTTCEEEECTT
T ss_pred CCCCCcccCCCccccEEecCCCeEEEEEEecCCCc--c--ccCC-CeEEecCCeEEEeCCCC---EEEECCCCeEecCCC
Confidence 34566789999999999999876544444333221 1 1111 11112222222222112 236799999999999
Q ss_pred CCCCCcccCCC-cccEEEEEecCCccccccee
Q 029632 147 TWHAGPLFKAD-DMDFYNLELSNTNVVDHTTH 177 (190)
Q Consensus 147 tWHa~pl~~~~-~~dF~vle~~~~~~~d~~~~ 177 (190)
+||. +-+.+ ..+-++-|.+..|..+.+.+
T Consensus 188 ~~H~--F~ae~g~G~vligEVSt~NDD~~DN~ 217 (246)
T 3kmh_A 188 LYHS--FWAEAGFGDVLVGEVSSVNDDDHDNH 217 (246)
T ss_dssp EEEE--EEECTTSCCEEEEEEEECCCTTTSEE
T ss_pred CEEE--EEecCCCccEEEEEcccCcCCCCCcc
Confidence 9995 33333 45778889998887777644
No 8
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=71.34 E-value=4.5 Score=27.76 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=29.6
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEecC
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSN 168 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~ 168 (190)
+.+.+++|+.+.+.+|++|..--...+.+.|+.+|+..
T Consensus 59 ~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v~~~~ 96 (97)
T 2fqp_A 59 VTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIKA 96 (97)
T ss_dssp EEEEECTTCCEEECTTCEEEEECCSSSCEEEEEEEECC
T ss_pred EEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEEEEcc
Confidence 56899999999999999996322333478899998764
No 9
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=70.63 E-value=28 Score=27.23 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=51.5
Q ss_pred EEEEEecCCCceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEe
Q 029632 57 FYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIA 136 (190)
Q Consensus 57 ~~i~~~~~~p~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ 136 (190)
+.+.++.-.|-.....-+|+..+|.+.-+.+.-. +.+..+. ++-..+..+.+.
T Consensus 72 ~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~-v~~~~~~--------------------------~~~~~~~~~~l~ 124 (201)
T 1fi2_A 72 VSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELL-VGILGSL--------------------------DSGNKLYSRVVR 124 (201)
T ss_dssp CEEEEEEECTTCEEEEEECTTCCEEEEEEESEEE-EEEECCG--------------------------GGTTCEEEEEEE
T ss_pred eEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEE-EEEEcCC--------------------------CCCCeEEEEEEC
Confidence 3444433333334446678888898888887643 3333121 001345689999
Q ss_pred CCeeEEecCCCCCCCcccCCCcccEEEEEecC
Q 029632 137 GPKFLKLNRGTWHAGPLFKADDMDFYNLELSN 168 (190)
Q Consensus 137 ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~ 168 (190)
+|+.+.+.+|+||..--...+...|+++-...
T Consensus 125 ~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~ 156 (201)
T 1fi2_A 125 AGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQ 156 (201)
T ss_dssp TTCEEEECTTCCEEEEECSSSCEEEEEEESSS
T ss_pred CCCEEEECCCCeEEEEeCCCCCEEEEEEECCC
Confidence 99999999999996322223466776665333
No 10
>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*
Probab=70.21 E-value=25 Score=28.11 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=48.8
Q ss_pred eeeeeccC--CCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCC--eeEEe
Q 029632 68 KFSTITHH--ASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGP--KFLKL 143 (190)
Q Consensus 68 ~v~~lERH--p~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~gg--qgV~y 143 (190)
.++-+=.| .--+|.+.-+.|.-+-|+|=.-.. .|.-....+|..++. +++-+
T Consensus 60 vlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~------------------------SpTfg~~~~~~Ls~~n~~~L~I 115 (184)
T 2ixk_A 60 VLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRG------------------------SPTFGQWVGERLSAENKRQMWI 115 (184)
T ss_dssp BEEEEEEESSSCCCEEEEEEESEEEEEEEECBTT------------------------STTTTCEEEEEEETTTCCEEEE
T ss_pred ceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCC------------------------CCCCCeEEEEEeCCCcCCEEEe
Confidence 45555555 445677777877655566632111 177788999998875 89999
Q ss_pred cCCCCCCCcccCCCcccEEEE
Q 029632 144 NRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 144 ~~GtWHa~pl~~~~~~dF~vl 164 (190)
-+|+||. ...+.+.+.++++
T Consensus 116 P~G~aHg-f~~lsd~a~~~y~ 135 (184)
T 2ixk_A 116 PAGFAHG-FVVLSEYAEFLYK 135 (184)
T ss_dssp CTTEEEE-EEECSSEEEEEEE
T ss_pred CCCeEEE-EEEcCCCEEEEEe
Confidence 9999994 6666665666555
No 11
>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*
Probab=69.66 E-value=26 Score=27.98 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=49.2
Q ss_pred eeeeeccC--CCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCC--eeEEe
Q 029632 68 KFSTITHH--ASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGP--KFLKL 143 (190)
Q Consensus 68 ~v~~lERH--p~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~gg--qgV~y 143 (190)
.++-|=.| .--.|.+.-+.+.-+-|+|=.-..+ |.-....+|..++. +++-+
T Consensus 59 vlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~S------------------------pTfg~~~~~~Ls~~n~~~L~I 114 (185)
T 1ep0_A 59 VLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNS------------------------DTYGEWTGVRLSDENRREFFI 114 (185)
T ss_dssp BEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTC------------------------TTTTCEEEEEEETTTCCEEEE
T ss_pred eEecceecCCccccEEEEEeCCeEEEEEEECCCCC------------------------CCCCeEEEEEecCCCCCEEEe
Confidence 45666666 4445667777776555555432211 77788999999874 89999
Q ss_pred cCCCCCCCcccCCCcccEEEE
Q 029632 144 NRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 144 ~~GtWHa~pl~~~~~~dF~vl 164 (190)
-+|+||. ...+.+.+.++++
T Consensus 115 P~G~aHg-f~~lsd~a~~~y~ 134 (185)
T 1ep0_A 115 PEGFAHG-FLALSDECIVNYK 134 (185)
T ss_dssp CTTEEEE-EEECSSEEEEEEE
T ss_pred CCCeEEE-EEEcCCCeEEEEe
Confidence 9999994 6666665666555
No 12
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=68.70 E-value=9.3 Score=26.82 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=50.1
Q ss_pred eEEEEEecCCCceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEE
Q 029632 56 RFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKI 135 (190)
Q Consensus 56 ~~~i~~~~~~p~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~ 135 (190)
++.+.++.-.|=.-..+-+|+.-.+.+.=+++ ...+. .+ | .+.+-+..
T Consensus 16 ~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G-~~~v~--~~----------------------------d-~~~~~~~l 63 (98)
T 3lag_A 16 EVRVTEWRLPPGSATGHHTHGMDYVVVPMADG-EMTIV--AP----------------------------D-GTRSLAQL 63 (98)
T ss_dssp SEEEEEEEECTTEECCSEECCSCEEEEESSCB-C-CEE--CT----------------------------T-SCEECCCB
T ss_pred eEEEEEEEECCCCccCcEECCCcEEEEEEecc-EEEEE--eC----------------------------C-CceEEEEe
Confidence 45666666556556668889887774443333 22221 11 1 23344556
Q ss_pred eCCeeEEecCCCCCCCcccCCCcccEEEEEecCC
Q 029632 136 AGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNT 169 (190)
Q Consensus 136 ~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~~ 169 (190)
..|+.+-...|+||..--.-..+..|+-+|++.+
T Consensus 64 ~~G~~~~ip~G~~H~~~N~g~~pl~~IeVE~K~~ 97 (98)
T 3lag_A 64 KTGRSYARKAGVQHDVRNESTAEIVFLEIELKAG 97 (98)
T ss_dssp CTTCCEEECTTCEEEEBCCSSSCEEEEEEEECC-
T ss_pred cCCcEEEEcCCCcEECEECCCCeEEEEEEEEccC
Confidence 7899999999999952223334888988888754
No 13
>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*
Probab=66.75 E-value=33 Score=27.35 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=48.9
Q ss_pred eeeeeccCC---CCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCC--eeEE
Q 029632 68 KFSTITHHA---SVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGP--KFLK 142 (190)
Q Consensus 68 ~v~~lERHp---~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~gg--qgV~ 142 (190)
.++-|=.|. --+|.+.-+.+.-+-|+|=.-.. .|.-....+|..++. +++-
T Consensus 58 vlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~------------------------SpTfg~~~~~~Ls~~n~~~L~ 113 (183)
T 1dzr_A 58 VLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKE------------------------SPTFGQWVGVNLSAENKRQLW 113 (183)
T ss_dssp BEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTT------------------------CTTTTCEEEEEEETTTCCEEE
T ss_pred eeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCC------------------------CCCCCeEEEEEecCCCCCEEE
Confidence 456666563 44577777877656666632211 177788999998875 8999
Q ss_pred ecCCCCCCCcccCCCcccEEEE
Q 029632 143 LNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 143 y~~GtWHa~pl~~~~~~dF~vl 164 (190)
+-+|+||. ...+.+.+.++++
T Consensus 114 IP~G~aHg-f~~lsd~a~~~y~ 134 (183)
T 1dzr_A 114 IPEGFAHG-FVTLSEYAEFLYK 134 (183)
T ss_dssp ECTTEEEE-EEECSSEEEEEEE
T ss_pred eCCCeEEE-EEEcCCCeEEEEE
Confidence 99999994 6666665555555
No 14
>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A
Probab=61.63 E-value=46 Score=27.04 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=47.9
Q ss_pred ceeeeeccCCC---CeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCC--eeE
Q 029632 67 LKFSTITHHAS---VTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGP--KFL 141 (190)
Q Consensus 67 ~~v~~lERHp~---tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~gg--qgV 141 (190)
=.++-|=.|.. -+|.+.-+.+.-+-|+|=. ..+ .|.-....+|..++. +++
T Consensus 57 GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDl--R~~----------------------SpTfG~~~~v~Ls~~n~~~L 112 (205)
T 1oi6_A 57 GVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDI--RVG----------------------SPTFGQWDSVLMDQQDPRAV 112 (205)
T ss_dssp TBEEEEEEECTTTCCCEEEEEEESCEEEEEECC--CBT----------------------CTTTTCEEEEEECSSSCCEE
T ss_pred CeEeeeeccCCCCCCceEEEEeCCEEEEEEEEC--CCC----------------------CCCCCeEEEEEecCCCCCEE
Confidence 34566655633 3567777776655555432 211 177788999998874 899
Q ss_pred EecCCCCCCCcccCCCcccEEEE
Q 029632 142 KLNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 142 ~y~~GtWHa~pl~~~~~~dF~vl 164 (190)
-+-+|+||. ...+.+.+.++++
T Consensus 113 ~IP~G~aHg-f~~lsd~a~~~y~ 134 (205)
T 1oi6_A 113 YLPVGVGHA-FVALEDDTVMSYM 134 (205)
T ss_dssp EECTTCEEE-EEECSTTEEEEEE
T ss_pred EeCCCeeEE-EEEccCCeEEEEe
Confidence 999999994 6666665555554
No 15
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=60.30 E-value=17 Score=24.58 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=26.3
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEecC
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSN 168 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~ 168 (190)
.+.+.+|+.+.+.+|++|..--...+...++++....
T Consensus 63 ~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~ 99 (113)
T 2gu9_A 63 TQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP 99 (113)
T ss_dssp EEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred EEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence 4789999999999999996322223366777775443
No 16
>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A
Probab=60.23 E-value=37 Score=27.52 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=49.7
Q ss_pred CceeeeeccCCC---CeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeC--Cee
Q 029632 66 PLKFSTITHHAS---VTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAG--PKF 140 (190)
Q Consensus 66 p~~v~~lERHp~---tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~g--gqg 140 (190)
+=.++-|=.|.. -+|.+.-+.+.-+.|+|=.-..+ |.-....+|..++ .++
T Consensus 74 ~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~S------------------------pTfG~~~~v~Ls~en~~~ 129 (196)
T 1wlt_A 74 KGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSS------------------------PTFGKYVKAELNEENHYM 129 (196)
T ss_dssp TTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTS------------------------TTTTCEEEEEEETTTCCE
T ss_pred CCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCC------------------------CCCCeEEEEEecCCCCCE
Confidence 345666766643 46777777766555555322111 7778899999986 699
Q ss_pred EEecCCCCCCCcccCCCcccEEEE
Q 029632 141 LKLNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 141 V~y~~GtWHa~pl~~~~~~dF~vl 164 (190)
+-+-+|+||. ...+.+.+.++++
T Consensus 130 L~IP~G~aHg-f~~lsd~a~~ly~ 152 (196)
T 1wlt_A 130 LWIPPGFAHG-FQALEDSIVIYFI 152 (196)
T ss_dssp EEECTTEEEE-EEESSSEEEEEEE
T ss_pred EEeCCCeEEE-EEEcCCCeEEEEE
Confidence 9999999994 6666665555544
No 17
>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}
Probab=60.23 E-value=38 Score=27.64 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=48.2
Q ss_pred ceeeeeccCC---CCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeC--CeeE
Q 029632 67 LKFSTITHHA---SVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAG--PKFL 141 (190)
Q Consensus 67 ~~v~~lERHp---~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~g--gqgV 141 (190)
=.++-|=.|. --.|.+.-+.+.-+-|+|=.-..+ |.-....+|..++ .+++
T Consensus 80 GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~S------------------------pTfg~~~~~~Ls~~n~~~L 135 (205)
T 3ryk_A 80 GTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDS------------------------PTFKQWRGYILSADNHRQL 135 (205)
T ss_dssp TBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTS------------------------TTTTCEEEEEEETTTCCEE
T ss_pred CcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCC------------------------CCCCeEEEEEecCCCCCEE
Confidence 3455565553 245667777766565555432221 7777889999987 7999
Q ss_pred EecCCCCCCCcccCCCcccEEEE
Q 029632 142 KLNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 142 ~y~~GtWHa~pl~~~~~~dF~vl 164 (190)
-+-+|+||. -..+.+.+.++.+
T Consensus 136 ~IP~G~aHG-F~~Lsd~a~~~Y~ 157 (205)
T 3ryk_A 136 LVPKGFAHG-FCTLVPHTIVMYK 157 (205)
T ss_dssp EECTTEEEE-EEECSSSEEEEEE
T ss_pred EeCCCceEE-EEEcCCCEEEEEE
Confidence 999999994 6666665555544
No 18
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=59.25 E-value=55 Score=27.44 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=45.0
Q ss_pred eeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCC
Q 029632 71 TITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHA 150 (190)
Q Consensus 71 ~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa 150 (190)
...+|+...|.+.-+.+.-.+.++... ...+.+.+..|+.+.+.+|+||.
T Consensus 248 ~~H~H~~~~E~~~Vl~G~~~~~v~~~~------------------------------g~~~~~~l~~GD~~~ip~~~~H~ 297 (361)
T 2vqa_A 248 QLHWHPNADEWQYVLDGEMDLTVFASE------------------------------GKASVSRLQQGDVGYVPKGYGHA 297 (361)
T ss_dssp EEEECSSCCEEEEEEESCEEEEEECST------------------------------TCEEEEEECTTCEEEECTTCEEE
T ss_pred ccccCCCCCEEEEEEeCEEEEEEEcCC------------------------------CcEEEEEECCCCEEEECCCCeEE
Confidence 347787778888888876554444321 12467899999999999999996
Q ss_pred CcccCC-CcccEEEEEec
Q 029632 151 GPLFKA-DDMDFYNLELS 167 (190)
Q Consensus 151 ~pl~~~-~~~dF~vle~~ 167 (190)
..... +.+.|+++-..
T Consensus 298 -~~n~~~~~~~~l~~~~~ 314 (361)
T 2vqa_A 298 -IRNSSQKPLDIVVVFND 314 (361)
T ss_dssp -EECCSSSCEEEEEEESS
T ss_pred -eEECCCCCEEEEEEECC
Confidence 33333 36677666533
No 19
>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1
Probab=57.69 E-value=50 Score=27.17 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=47.9
Q ss_pred eeeeeccCCC---CeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCC--eeEE
Q 029632 68 KFSTITHHAS---VTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGP--KFLK 142 (190)
Q Consensus 68 ~v~~lERHp~---tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~gg--qgV~ 142 (190)
.++-|=.|.. -+|.+.-+.+.-+-|+|=.-..+ |.-....+|..+.. +++-
T Consensus 66 vlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~S------------------------pTfG~~~~v~Ls~~n~~~L~ 121 (216)
T 2c0z_A 66 VVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGS------------------------PTYGCWEGTRLDDVSRRAVY 121 (216)
T ss_dssp BEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTC------------------------TTTTCEEEEEEETTTCCEEE
T ss_pred cEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCC------------------------CCCCeEEEEEecCCCCCEEE
Confidence 4555655543 35777777766555555432211 77778899998875 8999
Q ss_pred ecCCCCCCCcccCCCcccEEEE
Q 029632 143 LNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 143 y~~GtWHa~pl~~~~~~dF~vl 164 (190)
+-+|+||. ...+.+.+.++++
T Consensus 122 IP~G~aHg-F~~Lsd~a~~ly~ 142 (216)
T 2c0z_A 122 LSEGIGHG-FCAISDEATLCYL 142 (216)
T ss_dssp ECTTEEEE-EEECSSEEEEEEE
T ss_pred eCCCeeEE-EEEcCCCeEEEEe
Confidence 99999994 6666665555554
No 20
>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*
Probab=54.49 E-value=65 Score=26.63 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=47.9
Q ss_pred ceeeeeccCCC---CeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCC--eeE
Q 029632 67 LKFSTITHHAS---VTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGP--KFL 141 (190)
Q Consensus 67 ~~v~~lERHp~---tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~gg--qgV 141 (190)
=.++-|=.|.. -+|.+.-+.+.-+-|+| +...+ .|.-....+|..++. +++
T Consensus 76 GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~V--DlR~~----------------------SpTfG~~~~v~Ls~~n~~~L 131 (225)
T 1upi_A 76 GVLRGLHFAQLPPSQAKYVTCVSGSVFDVVV--DIREG----------------------SPTFGRWDSVLLDDQDRRTI 131 (225)
T ss_dssp TBEEEEEEECTTTCCCEEEEEEESEEEEEEE--CCCBT----------------------CTTTTCEEEEEEETTTCCEE
T ss_pred CeEeeeeccCCCCCcceEEEEeCCeEEEEEE--ECCCC----------------------CCCCCcEEEEEecCCCCcEE
Confidence 34566655643 35777777766555555 22211 177778899998875 899
Q ss_pred EecCCCCCCCcccCCCcccEEEE
Q 029632 142 KLNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 142 ~y~~GtWHa~pl~~~~~~dF~vl 164 (190)
-+-+|+||. ...+.+.+.++++
T Consensus 132 ~IP~G~aHg-F~~Lsd~a~vly~ 153 (225)
T 1upi_A 132 YVSEGLAHG-FLALQDNSTVMYL 153 (225)
T ss_dssp EECTTCEEE-EEECSSSEEEEEE
T ss_pred EeCCCeeEE-EEEcCCCEEEEEe
Confidence 999999995 6666655555554
No 21
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=54.11 E-value=7.5 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=28.5
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEecCC
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNT 169 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~~ 169 (190)
...+.+|+.+...+|+.|..--.-..+..|+.+|++++
T Consensus 60 ~~~l~aGd~~~~p~G~~H~~~N~g~~~l~fi~vE~k~~ 97 (98)
T 2ozi_A 60 LAQLKTGRSYARKAGVQHDVRNESTAEIVFLEIELKAG 97 (98)
T ss_dssp CCCBCTTCCEEECTTCEEEEEECSSSCEEEEEEEECC-
T ss_pred EEEECCCCEEEECCCCceeCEECCCCCEEEEEEEEcCC
Confidence 45678899999999999963333334899999999876
No 22
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=53.93 E-value=82 Score=25.04 Aligned_cols=95 Identities=16% Similarity=0.008 Sum_probs=54.7
Q ss_pred CCCceeeeeccCCC------CeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeC
Q 029632 64 NRPLKFSTITHHAS------VTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAG 137 (190)
Q Consensus 64 ~~p~~v~~lERHp~------tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~g 137 (190)
-+|=....+=+||. -++.|+-+++.. .+.+ .+. .++ + -.+..+.|.-+..+ .-.--++.+
T Consensus 60 l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v-~l~~--~g~----~~~--~--~~v~v~dg~~~~~~---a~~~i~L~p 125 (175)
T 2y0o_A 60 LFPGQTCPEHRHPPVDGQEGKQETFRCRYGKV-YLYV--EGE----KTP--L--PKVLPPQEDREHYT---VWHEIELEP 125 (175)
T ss_dssp ECTTCEEEEEECCCCTTSCCCCEEEEEEEEEE-EEEE--SSS----CCS--S--CSCCCCGGGGGGCC---CCEEEEECT
T ss_pred ECCCCcCCceECCCCCCCCCCceeEEEecCEE-EEEE--CCc----ccc--C--cceeccCCceeeec---CCcEEEECC
Confidence 34445566789998 888899887664 3444 221 111 0 01111123322222 234568899
Q ss_pred CeeEEecCCCCCCCcccCCCcccEEEEEecCCcccccc
Q 029632 138 PKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVVDHT 175 (190)
Q Consensus 138 gqgV~y~~GtWHa~pl~~~~~~dF~vle~~~~~~~d~~ 175 (190)
|+-|++-+|+||. ..+..+. -++.|.+..|..|.+
T Consensus 126 GesvtIppg~~H~-f~ageeg--vli~EvSt~~dDe~D 160 (175)
T 2y0o_A 126 GGQYTIPPNTKHW-FQAGEEG--AVVTEMSSTSTDKHD 160 (175)
T ss_dssp TCEEEECTTCCEE-EEEEEEE--EEEEEEEECCCGGGC
T ss_pred CCEEEECCCCcEE-EEeCCCC--EEEEEEeCCCCCCCc
Confidence 9999999999996 3332222 567788888774444
No 23
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=53.91 E-value=21 Score=25.45 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=28.4
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCC-CcccEEEEEecCCc
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKA-DDMDFYNLELSNTN 170 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~-~~~dF~vle~~~~~ 170 (190)
+.+.+.+|+.+.+.+|++|. ..... +...|+++......
T Consensus 79 ~~~~l~~Gd~~~ip~~~~H~-~~~~~~~~~~~l~i~~~~~~ 118 (145)
T 3ht1_A 79 RTEEVGPGEAIFIPRGEPHG-FVTGPGQTCRFLVVAPCERP 118 (145)
T ss_dssp EEEEECTTCEEEECTTCCBE-EECCTTCCEEEEEEEESCCC
T ss_pred EEEEECCCCEEEECCCCeEE-eEcCCCCCEEEEEEECCCCC
Confidence 46889999999999999996 33333 36777777655443
No 24
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=53.25 E-value=12 Score=24.99 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=24.3
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEe
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLEL 166 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~ 166 (190)
.+.+.+|+.+.+.+|++|.. ... ....+++++.
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~-~~~-~~~~~l~i~~ 101 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKP-MAK-EECKIMIIEP 101 (102)
T ss_dssp EEEEETTEEEEECTTCCBEE-EEE-EEEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEee-EcC-CCCEEEEEEc
Confidence 57889999999999999962 222 3566666653
No 25
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=52.12 E-value=16 Score=24.02 Aligned_cols=34 Identities=9% Similarity=-0.137 Sum_probs=24.7
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCC-CcccEEEEE
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKA-DDMDFYNLE 165 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~-~~~dF~vle 165 (190)
+.+.+.+|+.+.+.+|++|. ..... +...|+++.
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~-~~~~~~~~~~~~~v~ 101 (105)
T 1v70_A 67 EEALLAPGMAAFAPAGAPHG-VRNESASPALLLVVT 101 (105)
T ss_dssp EEEEECTTCEEEECTTSCEE-EECCSSSCEEEEEEE
T ss_pred EEEEeCCCCEEEECCCCcEE-eEeCCCCCEEEEEEe
Confidence 35789999999999999996 33333 356666654
No 26
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=44.64 E-value=30 Score=24.29 Aligned_cols=39 Identities=5% Similarity=0.135 Sum_probs=28.5
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEecCC
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNT 169 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~~ 169 (190)
+.+.+.+|+.+.+.+|++|..--...++..++++.....
T Consensus 66 ~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~i~~~~~ 104 (125)
T 3cew_A 66 EKIELQAGDWLRIAPDGKRQISAASDSPIGFLCIQVKAG 104 (125)
T ss_dssp EEEEEETTEEEEECTTCCEEEEEBTTBCEEEEEEEEETT
T ss_pred EEEEeCCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCc
Confidence 358899999999999999963322233677887776554
No 27
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=43.60 E-value=15 Score=25.15 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=25.2
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEecCC
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNT 169 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~~ 169 (190)
.+.+.+|+.+.+.+|++|. ... .+...+++++..++
T Consensus 68 ~~~l~~Gd~~~ip~~~~H~-~~~-~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 68 SMTIREGEMAVVPKSVSHR-PRS-ENGCSLVLIELSDP 103 (107)
T ss_dssp EEEECTTEEEEECTTCCEE-EEE-EEEEEEEEEECC--
T ss_pred EEEECCCCEEEECCCCcEe-eEe-CCCeEEEEEECCCc
Confidence 5789999999999999995 222 23566667765544
No 28
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=42.99 E-value=32 Score=24.04 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=26.6
Q ss_pred EEEEeCCeeEEecCCCCCCCcccC-CCcccEEEEEec
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFK-ADDMDFYNLELS 167 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~-~~~~dF~vle~~ 167 (190)
.+.+.+|+.+.+.+|++|. .... .+...|+++-+.
T Consensus 73 ~~~l~~Gd~~~i~~~~~H~-~~~~~~~~~~~~~i~f~ 108 (128)
T 4i4a_A 73 DFPVTKGDLIIIPLDSEHH-VINNNQEDFHFYTIWWD 108 (128)
T ss_dssp EEEEETTCEEEECTTCCEE-EEECSSSCEEEEEEEEC
T ss_pred EEEECCCcEEEECCCCcEE-eEeCCCCCEEEEEEEEC
Confidence 5889999999999999996 3333 336677777654
No 29
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=41.29 E-value=29 Score=24.26 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=23.8
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCC-CcccEEEEE
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKA-DDMDFYNLE 165 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~-~~~dF~vle 165 (190)
.+.+.+|+.+.+.+|++|. ..... ++..|+++-
T Consensus 80 ~~~l~~Gd~~~i~~~~~H~-~~n~~~~~~~~l~v~ 113 (125)
T 3h8u_A 80 VTHLKAGDIAIAKPGQVHG-AMNSGPEPFIFVSVV 113 (125)
T ss_dssp EEEEETTEEEEECTTCCCE-EEECSSSCEEEEEEE
T ss_pred EEEeCCCCEEEECCCCEEE-eEeCCCCCEEEEEEE
Confidence 4788999999999999996 33333 355665553
No 30
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=40.83 E-value=32 Score=24.42 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=26.1
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEec
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELS 167 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~ 167 (190)
.+.+.+|+.+.+.+|++|..--...+...|+++...
T Consensus 87 ~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~v~~~ 122 (126)
T 1vj2_A 87 EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPK 122 (126)
T ss_dssp EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEEG
T ss_pred EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 478999999999999999633222336777776543
No 31
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=40.74 E-value=91 Score=26.43 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=27.3
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEec
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELS 167 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~ 167 (190)
+.|.+..|+.+.+.+|+||..--...+.+.|+++-..
T Consensus 301 ~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~~ 337 (385)
T 1j58_A 301 RTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKD 337 (385)
T ss_dssp EEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESS
T ss_pred EEEEEcCCCEEEECCCCeEEEEECCCCCEEEEEEECC
Confidence 5789999999999999999632222346777777543
No 32
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=39.31 E-value=28 Score=26.85 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=26.7
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEec
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELS 167 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~ 167 (190)
.+.+.+|+.|.+.+|+||..--...+...|+++...
T Consensus 92 ~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i~~~ 127 (166)
T 3jzv_A 92 VSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNA 127 (166)
T ss_dssp EEEECTTCEEEECTTCCEEEECCTTSCEEEEEEEES
T ss_pred EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 588999999999999999633222336777777644
No 33
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=39.01 E-value=1.4e+02 Score=24.84 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=43.6
Q ss_pred eeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCC
Q 029632 69 FSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTW 148 (190)
Q Consensus 69 v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtW 148 (190)
....-+|+...|.+.-+.+.-.+-+|.+.+ .-+.+.+..|+.+.+.+|+|
T Consensus 64 ~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g------------------------------~~~~~~l~~GD~~~ip~g~~ 113 (361)
T 2vqa_A 64 IRELHWHANAAEWAYVMEGRTRITLTSPEG------------------------------KVEIADVDKGGLWYFPRGWG 113 (361)
T ss_dssp EEEEEECTTCCEEEEEEESEEEEEEECTTS------------------------------CEEEEEEETTEEEEECTTCE
T ss_pred CCCceeCCCCCEEEEEEEeEEEEEEEeCCC------------------------------cEEEEEEcCCCEEEECCCCe
Confidence 334567887788888888765444443211 22458999999999999999
Q ss_pred CCCcccCC-CcccEEEEE
Q 029632 149 HAGPLFKA-DDMDFYNLE 165 (190)
Q Consensus 149 Ha~pl~~~-~~~dF~vle 165 (190)
|. ..... +.+.|+.+-
T Consensus 114 H~-~~n~~~~~~~~l~v~ 130 (361)
T 2vqa_A 114 HS-IEGIGPDTAKFLLVF 130 (361)
T ss_dssp EE-EEECSSSCEEEEEEE
T ss_pred EE-EEeCCCCCEEEEEEE
Confidence 95 44444 366666543
No 34
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=38.15 E-value=45 Score=25.29 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=27.9
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEecCC
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNT 169 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~~ 169 (190)
.+.+.+|+.|.+.+|+||..--...++..|+++-..+.
T Consensus 83 ~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~~ 120 (156)
T 3kgz_A 83 ISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAAR 120 (156)
T ss_dssp EEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESSC
T ss_pred EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCCC
Confidence 57899999999999999963322334777887765443
No 35
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=34.91 E-value=62 Score=21.95 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=25.1
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEec
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELS 167 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~ 167 (190)
.+.+.+|+.+.+.+|++|. ..... ...|+++-..
T Consensus 79 ~~~l~~Gd~~~ip~~~~H~-~~~~~-~~~~~~v~~~ 112 (115)
T 1yhf_A 79 TYRVAEGQTIVMPAGIPHA-LYAVE-AFQMLLVVVK 112 (115)
T ss_dssp EEEEETTCEEEECTTSCEE-EEESS-CEEEEEEEEC
T ss_pred EEEECCCCEEEECCCCCEE-EEECC-CceEEEEEEc
Confidence 4789999999999999995 33333 5666666543
No 36
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=33.39 E-value=38 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=27.5
Q ss_pred EEEEeCCeeEEecCCCCCCCcccC-CCcccEEEEEecC
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFK-ADDMDFYNLELSN 168 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~-~~~~dF~vle~~~ 168 (190)
.+.+.+|+.|.+.+|++|..--.. .+...|+++....
T Consensus 95 ~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 95 VEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp EEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred EEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 688999999999999999643333 3477777776443
No 37
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=31.14 E-value=58 Score=23.35 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=25.2
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCCcccEEEEE
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLE 165 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle 165 (190)
+.+.+.+|+.+.+.+|++|..--...+.+.|+++-
T Consensus 96 ~~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v~ 130 (133)
T 1o4t_A 96 KDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAVI 130 (133)
T ss_dssp EEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred EEEEeCCCcEEEECCCCcEEeEECCCCCEEEEEEE
Confidence 35889999999999999996332223366666654
No 38
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=30.78 E-value=29 Score=25.69 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred CCCeEEEEEeCCeeEEecCCCCC
Q 029632 127 IEDVRVFKIAGPKFLKLNRGTWH 149 (190)
Q Consensus 127 l~~lrAF~~~ggqgV~y~~GtWH 149 (190)
.+-||+|++.+++-|.+++ .|-
T Consensus 23 vEvlRaWVad~glhvsl~~-~~~ 44 (101)
T 3ic3_A 23 IEVLRAFVLDGGLSIAFMR-AFE 44 (101)
T ss_dssp EEEEEEEEETTEEEEEECS-CCC
T ss_pred HHHHHHHHHcCCeEEEehh-hhc
Confidence 4679999999999999999 984
No 39
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=30.10 E-value=1e+02 Score=28.78 Aligned_cols=67 Identities=4% Similarity=0.062 Sum_probs=46.2
Q ss_pred eeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCC
Q 029632 68 KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGT 147 (190)
Q Consensus 68 ~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~Gt 147 (190)
.+..+=.||..++.+.-+.+.-.+-+|...+ ..+..+.+..|+-+.+-+|+
T Consensus 405 gm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G-----------------------------~~v~~~~L~~GDV~v~P~G~ 455 (531)
T 3fz3_A 405 GIYSPHWNVNAHSVVYVIRGNARVQVVNENG-----------------------------DAILDQEVQQGQLFIVPQNH 455 (531)
T ss_dssp CEEEEEEESSCCEEEEEEEEEEEEEEECTTS-----------------------------CEEEEEEEETTCEEEECTTC
T ss_pred ccccceEcCCCCEEEEEEeCcEEEEEEeCCC-----------------------------cEEEEEEecCCeEEEECCCC
Confidence 3445567899999888888766555554221 35677899999999999999
Q ss_pred CCCCcccCCCcccEEEE
Q 029632 148 WHAGPLFKADDMDFYNL 164 (190)
Q Consensus 148 WHa~pl~~~~~~dF~vl 164 (190)
+|. -....+...|+++
T Consensus 456 ~H~-~~ag~e~l~flaF 471 (531)
T 3fz3_A 456 GVI-QQAGNQGFEYFAF 471 (531)
T ss_dssp EEE-EEEEEEEEEEEEE
T ss_pred eEE-EecCCCCEEEEEE
Confidence 994 4433235555544
No 40
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=29.53 E-value=45 Score=24.42 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=41.3
Q ss_pred eccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCC
Q 029632 72 ITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAG 151 (190)
Q Consensus 72 lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~ 151 (190)
.-+|+...|.+.-+.+.- .+.+.... .. ..-.+.+.+|+.|.+.+|++|..
T Consensus 58 ~H~H~~~~E~~~Vl~G~~-~~~i~~~~--------------------------~~--~~~~~~l~~Gd~i~ip~g~~H~~ 108 (148)
T 2oa2_A 58 LEIHPHLDQFLRVEEGRG-LVQMGHRQ--------------------------DN--LHFQEEVFDDYAILIPAGTWHNV 108 (148)
T ss_dssp CBCCTTCEEEEEEEESEE-EEEEESBT--------------------------TB--CCEEEEEETTCEEEECTTCEEEE
T ss_pred ceECCCCcEEEEEEeCEE-EEEECCcc--------------------------cc--ceeeEEECCCCEEEECCCCcEEE
Confidence 456776668888887754 33332110 11 12458999999999999999963
Q ss_pred cccCCCcccEEEEE
Q 029632 152 PLFKADDMDFYNLE 165 (190)
Q Consensus 152 pl~~~~~~dF~vle 165 (190)
--...+...|+++-
T Consensus 109 ~n~~~~~~~~l~i~ 122 (148)
T 2oa2_A 109 RNTGNRPLKLYSIY 122 (148)
T ss_dssp EECSSSCEEEEEEE
T ss_pred EECCCCCEEEEEEE
Confidence 32223366777664
No 41
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=28.78 E-value=68 Score=22.21 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=23.0
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEE
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vl 164 (190)
.+.+.+|+.+.+.+|++|. .....+.+.++.+
T Consensus 80 ~~~l~~Gd~~~ip~~~~H~-~~~~~~~~~~l~v 111 (126)
T 4e2g_A 80 TRVLRPGMAYTIPGGVRHR-ARTFEDGCLVLDI 111 (126)
T ss_dssp EEEECTTEEEEECTTCCEE-EECCTTCEEEEEE
T ss_pred EEEeCCCCEEEECCCCcEE-eEECCCCEEEEEE
Confidence 4889999999999999995 4443433444443
No 42
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=27.61 E-value=58 Score=22.38 Aligned_cols=34 Identities=3% Similarity=-0.030 Sum_probs=24.9
Q ss_pred EEeCCeeEEecCCCCCCCcccCCC-cccEEEEEecC
Q 029632 134 KIAGPKFLKLNRGTWHAGPLFKAD-DMDFYNLELSN 168 (190)
Q Consensus 134 ~~~ggqgV~y~~GtWHa~pl~~~~-~~dF~vle~~~ 168 (190)
.+.+|+.+.+.+|++|. .....+ ...|+++....
T Consensus 69 ~l~~Gd~i~ip~~~~H~-~~~~~~~~~~~l~i~~~~ 103 (117)
T 2b8m_A 69 NYKEGNIVYVPFNVKML-IQNINSDILEFFVVKAPH 103 (117)
T ss_dssp EEETTCEEEECTTCEEE-EECCSSSEEEEEEEECSC
T ss_pred EeCCCCEEEECCCCcEE-eEcCCCCCEEEEEEECCC
Confidence 78999999999999996 333333 56777775444
No 43
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=26.47 E-value=1.9e+02 Score=21.11 Aligned_cols=39 Identities=5% Similarity=-0.021 Sum_probs=28.9
Q ss_pred CCeEEEEEeCCeeEEecCCCCCCCcccCC--CcccEEEEEec
Q 029632 128 EDVRVFKIAGPKFLKLNRGTWHAGPLFKA--DDMDFYNLELS 167 (190)
Q Consensus 128 ~~lrAF~~~ggqgV~y~~GtWHa~pl~~~--~~~dF~vle~~ 167 (190)
...+.+.+.+|+.+.+.+|++|. ..... +...|+++-..
T Consensus 85 ~~~~~~~l~~Gd~i~ip~~~~H~-~~n~~~~~~~~~l~i~~~ 125 (163)
T 1lr5_A 85 GQPQEIPFFQNTTFSIPVNDPHQ-VWNSDEHEDLQVLVIISR 125 (163)
T ss_dssp CSCEEEEECTTEEEEECTTCCEE-EECCCSSSCEEEEEEEES
T ss_pred CccEEEEeCCCCEEEECCCCcEE-eEeCCCCCCEEEEEEECC
Confidence 35688999999999999999996 33333 36666666533
No 44
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=26.13 E-value=64 Score=22.02 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=24.9
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCCcccEEEEEec
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELS 167 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~ 167 (190)
+.+.+.+|+.+.+.+|+.|. .... +...|+++...
T Consensus 76 ~~~~l~~Gd~i~i~~~~~H~-~~~~-~~~~~~~i~~~ 110 (114)
T 2ozj_A 76 QKIDLVPEDVLMVPAHKIHA-IAGK-GRFKMLQITLI 110 (114)
T ss_dssp EEEEECTTCEEEECTTCCBE-EEEE-EEEEEEEEEEC
T ss_pred EEEEecCCCEEEECCCCcEE-EEeC-CCcEEEEEEEc
Confidence 35789999999999999995 3322 35566665543
No 45
>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A
Probab=25.25 E-value=2.7e+02 Score=22.49 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=29.9
Q ss_pred CCCCCeEEEEEeC--CeeEEecCCCCCCCcccCCCcccEEEE
Q 029632 125 PAIEDVRVFKIAG--PKFLKLNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 125 Pdl~~lrAF~~~g--gqgV~y~~GtWHa~pl~~~~~~dF~vl 164 (190)
|.-.+..++..+. ++.+-+-+|+||. -..+.+.+.|+..
T Consensus 91 pTfG~w~~v~Ls~en~~~l~IP~GfaHG-F~~Lsd~a~~~Y~ 131 (201)
T 4hn1_A 91 PTFGRWEIVPMDAERNTAVYLTAGLGRA-FLSLTDDATLVFL 131 (201)
T ss_dssp TTTTCEEEEEEETTTCCEEEECTTCEEE-EEECSTTEEEEEE
T ss_pred CCCCeEEEEEecCCCCCEEEeCCcceEE-EeecCCCeEEEEe
Confidence 7778889999886 7899999999994 6666665555433
No 46
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=25.08 E-value=11 Score=21.44 Aligned_cols=17 Identities=12% Similarity=0.456 Sum_probs=13.1
Q ss_pred eeCChhhccCCcceEee
Q 029632 18 IEATAESFKEYGQVIEA 34 (190)
Q Consensus 18 ~pLT~eaFAPfG~VI~~ 34 (190)
..||.|.|..||++++.
T Consensus 9 i~ls~~~y~~yG~~Lqk 25 (26)
T 2jsh_A 9 IKLSGAQYQQHGRALXX 25 (26)
T ss_dssp GGGHHHHCSCSSSCC--
T ss_pred eEecHHHHHHHhHHhcc
Confidence 45889999999999863
No 47
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=24.75 E-value=67 Score=22.62 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.1
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCCcccEEEE
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNL 164 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vl 164 (190)
+.+.+.+|+.+.+.+|++|. .....+...|+++
T Consensus 83 ~~~~l~~Gd~~~ip~g~~H~-~~~~~~~~~~l~~ 115 (134)
T 2o8q_A 83 GAVMLEAGGSAFQPPGVRHR-ELRHSDDLEVLEI 115 (134)
T ss_dssp EEEEEETTCEEECCTTCCEE-EEEECTTCEEEEE
T ss_pred EEEEecCCCEEEECCCCcEE-eEeCCCCeEEEEE
Confidence 56889999999999999995 3333334455544
No 48
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=24.72 E-value=1.8e+02 Score=24.49 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=22.6
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCCCcccEEE
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYN 163 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~v 163 (190)
+.+.+..|+.+.+.+|+||. .....+...|+.
T Consensus 122 ~~~~l~~GD~~~ip~g~~H~-~~n~~~~~~~~~ 153 (385)
T 1j58_A 122 FIDDVGEGDLWYFPSGLPHS-IQALEEGAEFLL 153 (385)
T ss_dssp EEEEEETTEEEEECTTCCEE-EEEEEEEEEEEE
T ss_pred EEEEeCCCCEEEECCCCeEE-EEECCCCEEEEE
Confidence 45789999999999999995 333333444444
No 49
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=24.08 E-value=1.5e+02 Score=24.22 Aligned_cols=89 Identities=10% Similarity=0.039 Sum_probs=49.6
Q ss_pred eEEEEEecCCCceeeeeccCCCCeeeeeeecCceEEEE-EE-CCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEE
Q 029632 56 RFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLG-VA-KPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVF 133 (190)
Q Consensus 56 ~~~i~~~~~~p~~v~~lERHp~tsQ~FiPl~~~~~lvv-VA-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF 133 (190)
.|.++++.-.|-.....=+|+...+.|.-|.+.--+.+ +. -++.++ ..+++. ..-.+++.+
T Consensus 42 ~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~-~~~~~~----------------~~~~~~~~~ 104 (239)
T 2xlg_A 42 GFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDE-LPVVGG----------------AGRGDLYSI 104 (239)
T ss_dssp EEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTS-CCSTTT----------------TCCEEEEEE
T ss_pred CEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCC-cccccc----------------cccCceeEE
Confidence 34555443333222234478888899999988643322 21 111110 000000 112467789
Q ss_pred EEeCCeeEEecCCCCCCCcccCCCcccE
Q 029632 134 KIAGPKFLKLNRGTWHAGPLFKADDMDF 161 (190)
Q Consensus 134 ~~~ggqgV~y~~GtWHa~pl~~~~~~dF 161 (190)
.+.+|+.|.+.+|+.|..--...++..|
T Consensus 105 ~l~~GD~i~iP~g~~H~~~N~~~~~~~~ 132 (239)
T 2xlg_A 105 QSEPKQLIYSPNHYMHGFVNPTDKTLPI 132 (239)
T ss_dssp ECCTTEEEEECTTEEEEEECCSSSCEEE
T ss_pred EECCCCEEEECCCCCEEEEeCCCCCEEE
Confidence 9999999999999999633333335666
No 50
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=23.96 E-value=76 Score=23.30 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=25.2
Q ss_pred EEEEEeCCeeEEecCC-CCCCCcccCCCcccEEEEEe
Q 029632 131 RVFKIAGPKFLKLNRG-TWHAGPLFKADDMDFYNLEL 166 (190)
Q Consensus 131 rAF~~~ggqgV~y~~G-tWHa~pl~~~~~~dF~vle~ 166 (190)
+.+.+.+|+.|.+.+| ++|..--...+...|+++..
T Consensus 86 ~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~ 122 (162)
T 3l2h_A 86 DQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQ 122 (162)
T ss_dssp EEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEE
T ss_pred EEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEEC
Confidence 3588999999999997 99963222233666666653
No 51
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=22.96 E-value=88 Score=21.19 Aligned_cols=32 Identities=3% Similarity=-0.111 Sum_probs=23.2
Q ss_pred EEEEeCCeeEEecCCCCCCCcccCCCcccEEEEE
Q 029632 132 VFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLE 165 (190)
Q Consensus 132 AF~~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle 165 (190)
.+.+.+|+.+.+.+|++|. ..... .+.++++-
T Consensus 73 ~~~l~~Gd~~~ip~~~~H~-~~~~~-~~~~l~v~ 104 (116)
T 2pfw_A 73 IKVLTAGDSFFVPPHVDHG-AVCPT-GGILIDTF 104 (116)
T ss_dssp EEEECTTCEEEECTTCCEE-EEESS-CEEEEEEE
T ss_pred EEEeCCCCEEEECcCCcee-eEeCC-CcEEEEEE
Confidence 5789999999999999995 33333 45555543
No 52
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=22.77 E-value=1.7e+02 Score=26.71 Aligned_cols=72 Identities=7% Similarity=-0.025 Sum_probs=45.9
Q ss_pred eeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCC
Q 029632 69 FSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTW 148 (190)
Q Consensus 69 v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtW 148 (190)
+..+=.||..++.+.-+.+.-.+-++...+ ..+-...+.+|+.+.+-+|++
T Consensus 379 ~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g-----------------------------~~~~~~~l~~GDv~vvP~G~~ 429 (493)
T 2d5f_A 379 IYSPHWNLNANSVIYVTRGKGRVRVVNAQG-----------------------------NAVFDGELRRGQLLVVPQNFV 429 (493)
T ss_dssp EEEEEEESSCCEEEEEEEEEEEEEEECTTS-----------------------------CEEEEEEEETTCEEEECTTCE
T ss_pred eeeeeECCCCCEEEEEEeceEEEEEEcCCC-----------------------------CEEEeEEEcCCCEEEECCCCe
Confidence 444567888889998888765444443111 233344699999999999999
Q ss_pred CCCcccCCCcccEEEEEecCCc
Q 029632 149 HAGPLFKADDMDFYNLELSNTN 170 (190)
Q Consensus 149 Ha~pl~~~~~~dF~vle~~~~~ 170 (190)
|. .....+...|+.+-.++.+
T Consensus 430 H~-~~n~~e~~~~l~~~ts~~p 450 (493)
T 2d5f_A 430 VA-EQGGEQGLEYVVFKTHHNA 450 (493)
T ss_dssp EE-EEEEEEEEEEEEEESSTTC
T ss_pred Ee-eeeCCCCEEEEEEECCCCC
Confidence 95 4443335666665544433
No 53
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=21.93 E-value=2.6e+02 Score=21.14 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=39.4
Q ss_pred CCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEEEEeCCeeEEecCCCCCCCccc
Q 029632 75 HASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLF 154 (190)
Q Consensus 75 Hp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF~~~ggqgV~y~~GtWHa~pl~ 154 (190)
|+-..+.+.-+.+.-.+-++.+. .-+.|.+..|+.+.+-+|++|. ..-
T Consensus 58 h~~a~E~~yVl~G~~~v~v~~~~-------------------------------~~~~~~l~~GDv~~~P~g~~H~-~~N 105 (178)
T 1dgw_A 58 HSDSDLLVLVLEGQAILVLVNPD-------------------------------GRDTYKLDQGDAIKIQAGTPFY-LIN 105 (178)
T ss_dssp EESSEEEEEEEESEEEEEEEETT-------------------------------EEEEEEEETTEEEEECTTCCEE-EEE
T ss_pred CCCCCEEEEEEeEEEEEEEEeCC-------------------------------CcEEEEECCCCEEEECCCCeEE-EEe
Confidence 77778888888876544444321 2457899999999999999995 433
Q ss_pred CCC--cccEEEE
Q 029632 155 KAD--DMDFYNL 164 (190)
Q Consensus 155 ~~~--~~dF~vl 164 (190)
..+ ...|+++
T Consensus 106 ~g~~~~l~~l~v 117 (178)
T 1dgw_A 106 PDNNQNLRILKF 117 (178)
T ss_dssp CCSSSCEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 333 3344444
No 54
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=21.17 E-value=4e+02 Score=23.62 Aligned_cols=91 Identities=5% Similarity=0.041 Sum_probs=57.7
Q ss_pred EEEEEecCCCceeeeeccCCCCeeeeeeecCceEEEEEECCCCCCCCCccCCCCcceeeccCCCcCCCCCCCCeEEE--E
Q 029632 57 FYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVF--K 134 (190)
Q Consensus 57 ~~i~~~~~~p~~v~~lERHp~tsQ~FiPl~~~~~lvvVA~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pdl~~lrAF--~ 134 (190)
+++.++.-.|=.+..+=.||.+++...-+.+.-.+-+|++.+.....+ . ..-.+.|.| .
T Consensus 266 is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~--~-----------------~~~~~~r~~~~~ 326 (434)
T 2ea7_A 266 VFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQ--Q-----------------EESLEVQRYRAE 326 (434)
T ss_dssp EEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTT--S-----------------CCCEEEEEEEEE
T ss_pred cceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccc--c-----------------ccCcceEEEEEE
Confidence 344444434445566778999999999999888777777643210000 0 111234678 9
Q ss_pred EeCCeeEEecCCCCCCCcccCCCcccEEEEEecC
Q 029632 135 IAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSN 168 (190)
Q Consensus 135 ~~ggqgV~y~~GtWHa~pl~~~~~~dF~vle~~~ 168 (190)
+..|+-+.+-+|.+|. -... +...|+.+...+
T Consensus 327 l~~Gdv~vvP~g~~h~-~~n~-~~~~~v~f~~~~ 358 (434)
T 2ea7_A 327 LSEDDVFVIPAAYPVA-INAT-SNLNFFAFGINA 358 (434)
T ss_dssp ECTTCEEEECTTCCEE-EEES-SSEEEEEEEETC
T ss_pred ecCCcEEEECCCCeEE-EEcC-CCeEEEEEECCC
Confidence 9999999999999995 4444 445555555444
No 55
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=20.30 E-value=1.2e+02 Score=21.40 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=28.6
Q ss_pred EEEEEeCCeeEEecCCCCCCCcccCC--CcccEEEEEecCC
Q 029632 131 RVFKIAGPKFLKLNRGTWHAGPLFKA--DDMDFYNLELSNT 169 (190)
Q Consensus 131 rAF~~~ggqgV~y~~GtWHa~pl~~~--~~~dF~vle~~~~ 169 (190)
+.+.+.+|+.+.+.+|+.|. -.... +...++++-+...
T Consensus 56 ~~~~l~~Gd~~~i~p~~~H~-~~~~~~~~~~~~~~i~f~~~ 95 (164)
T 2arc_A 56 REFVCRPGDILLFPPGEIHH-YGRHPEAREWYHQWVYFRPR 95 (164)
T ss_dssp EEEEECTTCEEEECTTCCEE-EEECTTSSEEEEEEEEECCC
T ss_pred EEEEecCCeEEEEcCCCCEE-EEeCCCCCcEEEEEEEECCh
Confidence 56899999999999999996 33333 3467777776654
Done!