BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029633
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4KMJ1|CHAC2_DANRE Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2
PE=2 SV=1
Length = 182
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 115/187 (61%), Gaps = 8/187 (4%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTL-EPAEGEV 59
MWVFGYGSLIWK F ++++ VGF+KG+ R F QGSTDHRG P PGR VTL E EG V
Sbjct: 1 MWVFGYGSLIWKVDFPYEDKRVGFVKGFSRRFWQGSTDHRGVPGKPGRVVTLIEDPEGCV 60
Query: 60 CWGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQ 119
WG AYK+ +++EV YL+ REK + P + ++YI S +
Sbjct: 61 -WGVAYKLPSGQEQEVK-EYLDYREKGGYGVITVTFHPKDEQQQP-MQDTLLYIGSCD-- 115
Query: 120 LNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVR 179
N NYLGPA LE IA+QI+++ GPSG N DYLF+L AL +L +D H+ L V+
Sbjct: 116 -NPNYLGPAPLETIAQQIVKSVGPSGKNTDYLFELADALRQLVPEDLDD-HLFSLERLVK 173
Query: 180 RILSEED 186
++ +ED
Sbjct: 174 QLQEQED 180
>sp|Q641Z5|CHAC2_RAT Cation transport regulator-like protein 2 OS=Rattus norvegicus
GN=Chac2 PE=2 SV=1
Length = 178
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 7/182 (3%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVC 60
MWVFGYGSLIWK F + +++VG+I Y R F QGSTDHRG P PGR VTL G
Sbjct: 1 MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSV 60
Query: 61 WGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQL 120
WG AYK+ +++EV TYL+ REK + + + T P V++YI + +
Sbjct: 61 WGVAYKLPVGKEEEVK-TYLDFREKGGYRTTTVIFYPKDSTTKPF--SVLLYIGTCD--- 114
Query: 121 NSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVRR 180
N NYLGPA LEDIA+QI A GPSG N +YLF+L ++ +L D+H+ L V+
Sbjct: 115 NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSIRKLVPEDA-DEHLFSLEKLVKE 173
Query: 181 IL 182
L
Sbjct: 174 RL 175
>sp|Q9CQG1|CHAC2_MOUSE Cation transport regulator-like protein 2 OS=Mus musculus GN=Chac2
PE=2 SV=1
Length = 178
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 7/182 (3%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVC 60
MWVFGYGSLIWK F + +++VG+I Y R F QGSTDHRG P PGR VTL G
Sbjct: 1 MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSV 60
Query: 61 WGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQL 120
WG AYK+ +++EV TYL+ REK + + + T P V++YI + +
Sbjct: 61 WGVAYKLPVGKEEEVK-TYLDFREKGGYRTTTVIFYPKDSTTKPF--SVLLYIGTCD--- 114
Query: 121 NSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVRR 180
N NYLGPA LEDIA+QI A GPSG N +YLF+L ++ +L D+H+ L V+
Sbjct: 115 NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSVRKLVPEDA-DEHLFSLEKLVKE 173
Query: 181 IL 182
L
Sbjct: 174 RL 175
>sp|Q5PPV4|CHAC2_XENLA Cation transport regulator-like protein 2 OS=Xenopus laevis
GN=chac2 PE=2 SV=1
Length = 184
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 9/182 (4%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTL-EPAEGEV 59
MWVFGYGSLIWK F + E++VG+I Y R F QGSTDHRG P PGR VTL E EG V
Sbjct: 1 MWVFGYGSLIWKVDFPYVEKLVGYIMCYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCV 60
Query: 60 CWGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQ 119
WG AY++ + +++EV YL+ REK + + + + + P V++YI + +
Sbjct: 61 -WGVAYRLPEGKEEEVK-AYLDFREKGGYRTSTVVFYPKDPSIQPF--NVLLYIGTCD-- 114
Query: 120 LNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVR 179
N NYLGPA LEDIA+QI+ A GPSG N +YLF+L +L L D+H+ L VR
Sbjct: 115 -NPNYLGPAPLEDIAEQILNAVGPSGRNTEYLFELANSLRNLVPEDA-DEHLFSLEKLVR 172
Query: 180 RI 181
++
Sbjct: 173 QL 174
>sp|Q5ZI66|CHAC2_CHICK Cation transport regulator-like protein 2 OS=Gallus gallus GN=chac2
PE=2 SV=1
Length = 186
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 110/180 (61%), Gaps = 9/180 (5%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTL-EPAEGEV 59
MWVFGYGSLIWK F + E++VG I+GY R F QGSTDHRG P PGR VTL E EG V
Sbjct: 1 MWVFGYGSLIWKVDFPYQEKMVGRIRGYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCV 60
Query: 60 CWGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQ 119
WG AY++ ++ EV YL+ REK + + + + P V++YI + +
Sbjct: 61 -WGVAYRLPAGQECEVK-AYLDFREKGGYRTTTVVFYPKDSSIKPF--DVLLYIGTRD-- 114
Query: 120 LNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVR 179
N NYLGPA L++IA+QII A GPSG N +YLF+L ++ L D+H+ L T +
Sbjct: 115 -NPNYLGPAPLQEIAEQIIDAVGPSGRNTEYLFELANSMRNLVPEDV-DEHLFSLEETSK 172
>sp|Q8WUX2|CHAC2_HUMAN Cation transport regulator-like protein 2 OS=Homo sapiens GN=CHAC2
PE=2 SV=1
Length = 184
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVC 60
MWVFGYGSLIWK F + +++VG+I Y R F QGSTDHRG P PGR VTL
Sbjct: 1 MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCV 60
Query: 61 WGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQL 120
WG AY++ +++EV YL+ REK + + + T P V++YI + +
Sbjct: 61 WGVAYRLPVGKEEEVK-AYLDFREKGGYRTTTVIFYPKDPTTKPF--SVLLYIGTCD--- 114
Query: 121 NSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVRR 180
N +YLGPA LEDIA+QI A GPSG N +YLF+L ++ L D+H+ L V+
Sbjct: 115 NPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEA-DEHLFALEKLVKE 173
Query: 181 IL 182
L
Sbjct: 174 RL 175
>sp|Q0IIH4|CHAC2_BOVIN Cation transport regulator-like protein 2 OS=Bos taurus GN=CHAC2
PE=2 SV=1
Length = 176
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 104/182 (57%), Gaps = 19/182 (10%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVC 60
MWVFGYGSLIWK F + +++VG+I GY R F QGSTDHRG P +G V
Sbjct: 1 MWVFGYGSLIWKVDFPYQDKLVGYISGYSRRFWQGSTDHRGV-----------PGKGSV- 48
Query: 61 WGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQL 120
WG AYK+ +++EV YL+ REK + + + T P V++YI + +
Sbjct: 49 WGVAYKLPVGKEEEVK-AYLDFREKGGYRTTTVIFYPKDSTTEPF--SVLLYIGTRD--- 102
Query: 121 NSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVRR 180
N NYLGPA LEDIA+QI A GPSG N +YLF+L ++ L D+H+ L V+
Sbjct: 103 NPNYLGPAPLEDIAEQIFNAAGPSGKNTEYLFELANSMRSLVPEDA-DEHLFSLEKLVKE 161
Query: 181 IL 182
L
Sbjct: 162 RL 163
>sp|Q5SPB6|CHAC1_DANRE Cation transport regulator-like protein 1 OS=Danio rerio GN=chac1
PE=2 SV=1
Length = 196
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVC 60
+W+FGYGSL+WK F + VG+IKGY+R F G HRG + PGR VTL E +VC
Sbjct: 13 LWIFGYGSLVWKPDFKYKRSKVGYIKGYKRRFWHGDNFHRGDDEMPGRVVTLI-EEDDVC 71
Query: 61 -WGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTD--PMATTPAVSGVMVYIASAN 117
WG A+++T + +E ++ YL VRE + YL D P T +VYIA+ +
Sbjct: 72 TWGVAFEVTGSQMEE-SLKYLNVREAV--RGGYLTRAVDFFPRGTNQPPVQALVYIATPD 128
Query: 118 KQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVID---- 173
N YLGPAS E+IA QI +G SG N +YL +L + + + C +D H+
Sbjct: 129 ---NPIYLGPASTEEIASQIAVCKGNSGHNIEYLLRLAE-FMRVSCPDVDDPHLFSIEAA 184
Query: 174 LANTVRRIL 182
L T+R IL
Sbjct: 185 LLATIRPIL 193
>sp|B3STU3|CHAC1_RAT Cation transport regulator-like protein 1 OS=Rattus norvegicus
GN=Chac1 PE=2 SV=1
Length = 222
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 100/185 (54%), Gaps = 11/185 (5%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVC 60
+W+FGYGSL+WK F + + VGF++GY R F QG T HRG+ K PGR VTL
Sbjct: 33 LWIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCT 92
Query: 61 WGAAYKITKKEDKEVAVTYLEVREK---QYDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117
WG AY++ ++ E A+ YL VRE YD K ++ P T + Y+A+
Sbjct: 93 WGVAYQVRGEQVSE-ALKYLNVREAVLGGYDTK---EVTFYPQDTPDQPLTALAYVATPQ 148
Query: 118 KQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANT 177
N YLGPA E IA QI+ G SG N +YL +L ++L +D+H+ + +
Sbjct: 149 ---NPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLAD-FMQLCGPQAQDEHLEAIVDA 204
Query: 178 VRRIL 182
V +L
Sbjct: 205 VGSLL 209
>sp|Q8R3J5|CHAC1_MOUSE Cation transport regulator-like protein 1 OS=Mus musculus GN=Chac1
PE=1 SV=2
Length = 223
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 100/185 (54%), Gaps = 11/185 (5%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVC 60
+W+FGYGSL+WK F + + VGF++GY R F QG T HRG+ K PGR VTL
Sbjct: 34 LWIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDREGCT 93
Query: 61 WGAAYKITKKEDKEVAVTYLEVREK---QYDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117
WG AY++ ++ E A+ YL VRE YD K ++ P T + Y+A+
Sbjct: 94 WGVAYQVRGEQVNE-ALKYLNVREAVLGGYDTK---EVTFYPQDTPDQPLTALAYVATPQ 149
Query: 118 KQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANT 177
N YLGPA E IA QI+ G SG N +YL +L ++L +D+H+ + +
Sbjct: 150 ---NPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLAD-FMQLCGPQAQDEHLEAIVDA 205
Query: 178 VRRIL 182
V +L
Sbjct: 206 VGTLL 210
>sp|Q9BUX1|CHAC1_HUMAN Cation transport regulator-like protein 1 OS=Homo sapiens GN=CHAC1
PE=1 SV=2
Length = 264
Score = 114 bits (285), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 11/185 (5%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVC 60
+W+FGYGSL+W+ F + + VGF++GY R F QG T HRG+ K PGR VTL
Sbjct: 75 LWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCT 134
Query: 61 WGAAYKITKKEDKEVAVTYLEVREK---QYDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117
WG AY++ + E A+ YL VRE YD K + + P + + Y+A+
Sbjct: 135 WGVAYQV-QGEQVSKALKYLNVREAVLGGYDTKE-VTFYPQDAPDQPLKA--LAYVATPQ 190
Query: 118 KQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANT 177
N YLGPA E IA QI+ G SG N +YL +L ++L +D+H+ + +
Sbjct: 191 ---NPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLAD-FMQLCGPQAQDEHLAAIVDA 246
Query: 178 VRRIL 182
V +L
Sbjct: 247 VGTML 251
>sp|P87305|CHAC_SCHPO Cation transport regulator-like protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC31F10.03 PE=3
SV=1
Length = 203
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 92/197 (46%), Gaps = 18/197 (9%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAE---- 56
+WVFGYGSLIW H+D + FIKGY R F S DHRGT PG +TL P E
Sbjct: 10 LWVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWKQ 69
Query: 57 ---------GEVCWGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPAVS 107
E CWG A++I K +V YL+ RE + ++ P +
Sbjct: 70 FSDWSFTPFDEGCWGMAFRIPAKYATQVR-EYLDDREVNGYTAHSVPVYAHTGDEIPVLE 128
Query: 108 GVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCE 167
+VY+ ++ + + L +AK I G SG N YLF+L K L L +
Sbjct: 129 NCLVYVGTSK---SPQFQPSDDLTQMAKIISTRRGKSGDNFVYLFELAKCLRHLSPES-K 184
Query: 168 DKHVIDLANTVRRILSE 184
D HV +L VR+ + +
Sbjct: 185 DIHVFELEAEVRKQMQK 201
>sp|P32656|CHAC_YEAST Cation transport regulator-like protein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YER163C PE=1 SV=1
Length = 232
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 51/227 (22%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAE---- 56
+WV GYGSLI+K H+ R+ I G+ R F Q STDHRGTP PGR TL P E
Sbjct: 8 IWVLGYGSLIYKPPSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDIIR 67
Query: 57 ---------------------GEVCWGAAYKITKKEDKEVAVTYLEVREKQ----YDKKA 91
V G Y I + +EV YL VRE+ ++ +
Sbjct: 68 QTAFLKNVNLYSESAPIQDPDDLVTIGVVYYIPPEHAQEVR-EYLNVREQNGYTLHEVEV 126
Query: 92 YLDL-------FTDPMATTP-------AVSGVMVYIASANKQLNSNYLGPASLEDIAKQI 137
+L+ + + P V VYI + + N ++GP ++++ AK I
Sbjct: 127 HLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYIGTID---NEAFVGPETVDETAKVI 183
Query: 138 IQAEGPSGPNRDYLFQLEKALLEL----ECSGCEDKHVIDLANTVRR 180
+ GPSG N +YL +LE+AL ++ E D ++ L TV +
Sbjct: 184 AVSHGPSGSNYEYLAKLEQALAQMPIMKERGRITDHYLTALLETVNK 230
>sp|P39163|CHAC_ECOLI Cation transport protein ChaC OS=Escherichia coli (strain K12)
GN=chaC PE=3 SV=3
Length = 231
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 11/184 (5%)
Query: 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVC 60
+W+FGYGSL+W F E G + G+ R F T RGT PGR + L+ EG
Sbjct: 47 VWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALK--EGGRT 104
Query: 61 WGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQL 120
G AY++ +E E +T L RE YL + +V+I
Sbjct: 105 TGVAYRL-PEETLEQELTLLWKRE--MITGCYLPTWCQLDLDDGRTVNAIVFIMDPR--- 158
Query: 121 NSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVRR 180
+ Y + IA I A GP G N YLF LE+ L++L G +D + DL +V++
Sbjct: 159 HPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKL---GMQDDGLNDLLVSVKK 215
Query: 181 ILSE 184
+L+E
Sbjct: 216 LLAE 219
>sp|P58502|TKSU_PYRKO Tk-subtilisin OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=TK1675 PE=1 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 87 YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA------ 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 336 YPDDSYETLMGTSMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 394
Query: 141 --EGPSGPNRDYLFQLEKALLELECS 164
GP+G + DY + + +A L ++ +
Sbjct: 395 DDLGPTGWDADYGYGVVRAALAVQAA 420
>sp|D5ANH9|RP54_RHOCB RNA polymerase sigma-54 factor OS=Rhodobacter capsulatus (strain
ATCC BAA-309 / NBRC 16581 / SB1003) GN=rpoN PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 38 DHRGTPKFPGRTVTLEPAEG---EVCWGAAYKITKKEDKEV-----AVTYLEVREKQYDK 89
DH+ TP FP + + AEG E+ + IT +ED+ A E R+ +
Sbjct: 214 DHQPTPVFPPDLIAVRGAEGWTVELNRATSPTITVREDRFADGTADAKARAERRKALAEA 273
Query: 90 KAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQI 137
+A T + V+V SA +L P +LED+A ++
Sbjct: 274 RALAQALERRGDTLLRTAAVLVARQSAFLDKGPAHLVPLTLEDVASEL 321
>sp|P54891|RDRP_ACLSA RNA-directed RNA polymerase OS=Apple chlorotic leaf spot virus
(isolate apple) PE=4 SV=1
Length = 1885
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 111 VYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGC-EDK 169
V + S +L S+ ++ + A G G DY+ ++ LL+ CSG K
Sbjct: 1276 VIVLSEEAKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASK 1335
Query: 170 HVIDLANTVRRILSEED 186
I +++V+ ILSE+D
Sbjct: 1336 EFILGSSSVKLILSEKD 1352
>sp|Q10WA6|SYGB_TRIEI Glycine--tRNA ligase beta subunit OS=Trichodesmium erythraeum
(strain IMS101) GN=glyS PE=3 SV=1
Length = 719
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 98 DPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKA 157
DP A A +GV+ SAN LN + L LE+IA + S N D L QL
Sbjct: 485 DPFALRRAANGVVNISWSANLPLNLHQL----LEEIATNFFKTY--SQTNSDLLAQLSNF 538
Query: 158 LLE-LECSGCEDKHV-IDLANTV 178
LL+ ++ E+K++ DL N V
Sbjct: 539 LLQRIKTILLEEKNIDYDLVNAV 561
>sp|P27738|RDRP_ACLSP RNA-directed RNA polymerase OS=Apple chlorotic leaf spot virus
(isolate plum P863) PE=4 SV=1
Length = 1884
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 111 VYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGC-EDK 169
V + S +L S+ ++ + A G G DY+ ++ LL+ CSG K
Sbjct: 1275 VIVLSEEAKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRICSGVGASK 1334
Query: 170 HVIDLANTVRRILSEEDSA 188
I +++V ILSE+D A
Sbjct: 1335 EFILGSSSVNLILSEKDIA 1353
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,551,818
Number of Sequences: 539616
Number of extensions: 3093893
Number of successful extensions: 7481
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7449
Number of HSP's gapped (non-prelim): 27
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)