Query 029633
Match_columns 190
No_of_seqs 139 out of 713
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 16:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04752 ChaC: ChaC-like prote 100.0 3.3E-67 7.2E-72 426.2 20.8 174 1-180 1-177 (178)
2 KOG3182 Predicted cation trans 100.0 4.7E-66 1E-70 418.1 18.1 177 1-183 10-187 (212)
3 COG3703 ChaC Uncharacterized p 100.0 1.3E-58 2.9E-63 373.8 20.1 171 1-185 12-186 (190)
4 PHA03014 hypothetical protein; 99.8 1.6E-18 3.5E-23 139.1 16.0 141 1-180 3-160 (163)
5 cd06661 GGCT_like GGCT-like do 99.7 2.5E-17 5.4E-22 119.4 8.6 91 3-114 1-99 (99)
6 KOG4059 Uncharacterized conser 99.5 8.1E-15 1.8E-19 116.1 5.4 153 2-176 25-186 (193)
7 PF13772 AIG2_2: AIG2-like fam 99.2 9.8E-11 2.1E-15 83.8 7.8 79 59-174 1-83 (83)
8 PF06094 AIG2: AIG2-like famil 99.1 6.3E-10 1.4E-14 81.3 9.4 97 3-115 1-102 (102)
9 COG2105 Uncharacterized conser 98.2 1.4E-05 3.1E-10 61.3 8.6 91 3-117 4-102 (120)
10 KOG4450 Uncharacterized conser 86.0 1.2 2.6E-05 35.7 4.0 100 2-114 8-122 (168)
11 KOG4311 Histidinol dehydrogena 59.8 13 0.00029 32.7 3.9 74 44-125 147-230 (359)
12 COG4762 Uncharacterized protei 48.4 8.8 0.00019 30.8 1.0 9 1-9 100-108 (168)
13 TIGR02606 antidote_CC2985 puta 28.1 73 0.0016 21.7 2.9 38 140-183 19-56 (69)
14 TIGR00290 MJ0570_dom MJ0570-re 27.3 2.6E+02 0.0056 23.5 6.6 38 124-161 40-84 (223)
15 PF08480 Disaggr_assoc: Disagg 25.6 32 0.00069 28.6 0.8 8 1-8 19-26 (198)
16 PF09286 Pro-kuma_activ: Pro-k 24.7 84 0.0018 23.9 3.0 40 121-170 41-80 (143)
17 PF04391 DUF533: Protein of un 23.1 77 0.0017 26.1 2.7 29 144-178 159-187 (188)
18 COG3516 Predicted component of 22.4 1.5E+02 0.0033 24.1 4.1 52 125-187 102-153 (169)
19 PF07107 WI12: Wound-induced p 21.5 62 0.0013 24.5 1.6 25 28-52 85-109 (109)
20 PF09164 VitD-bind_III: Vitami 21.2 1.4E+02 0.0031 20.6 3.2 29 148-180 12-40 (68)
21 COG2979 Uncharacterized protei 20.7 1.2E+02 0.0026 25.7 3.3 28 147-180 193-220 (225)
22 PF09278 MerR-DNA-bind: MerR, 20.3 2.4E+02 0.0051 18.1 4.2 47 127-179 14-60 (65)
No 1
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=100.00 E-value=3.3e-67 Score=426.23 Aligned_cols=174 Identities=48% Similarity=0.966 Sum_probs=162.6
Q ss_pred CeEEEecccCCCCCCCCceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHHHHHHH
Q 029633 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYL 80 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~~~~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~~l~~L 80 (190)
|||||||||||||.|++.++++|+|+||+|+|||.|++|||||++||+|+||++.+++.||||||+|+++++++ +|++|
T Consensus 1 ~WVFGYGSLiW~p~f~~~e~~~a~i~Gy~R~F~~~s~~hRGTpe~PGrvltL~~~~~~~c~Gvayrv~~~~~~~-~l~~L 79 (178)
T PF04752_consen 1 LWVFGYGSLIWNPGFPYAERRPAYIKGYHRRFCQGSTDHRGTPEQPGRVLTLDPGEEGSCWGVAYRVPEEDAEE-VLEYL 79 (178)
T ss_pred CEEEEeccceeCCCCCccceEEEEecCcccceEeeccccCCCcCCCcceeeeeeCCCCEEEEEEEEecCcCHHH-HHHHH
Confidence 79999999999999999999999999999999999999999999999999999988899999999999987765 99999
Q ss_pred HHhhh-c-CcccceeeEEeC-CCCCCCceEEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH
Q 029633 81 EVREK-Q-YDKKAYLDLFTD-PMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKA 157 (190)
Q Consensus 81 d~RE~-~-Y~~~~~v~v~~~-~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~A~~I~~a~G~sG~n~eYL~~l~~~ 157 (190)
|.||| + |+++ +++|++. +..+++.+++|++||++++ ||+|+|+++++++|++|++|+|++|+|.|||++|+++
T Consensus 80 ~~RE~~~Gy~~~-~v~~~~~~~~~~~~~~~~al~yv~~~~---n~~y~g~~~~~~~A~~Ia~a~G~~G~N~eYL~~l~~~ 155 (178)
T PF04752_consen 80 DEREMIGGYTRH-WVPFYPEVDTDSGPVIVEALVYVADPD---NPQYLGPLPLEEIARIIATASGPSGSNREYLFNLAEA 155 (178)
T ss_pred hhcccccccceE-EEEEEEeccCCCCceEEEEEEEEecCC---CccccCCCCHHHHHHHHhheECcCcCCHHHHHHHHHH
Confidence 99999 4 9988 9999873 2234555579999999998 9999999999999999999999999999999999999
Q ss_pred HHhhccCCCCChHHHHHHHHHHH
Q 029633 158 LLELECSGCEDKHVIDLANTVRR 180 (190)
Q Consensus 158 l~~l~~~g~~D~~l~~L~~~v~~ 180 (190)
|+++ +|++.|+||++|+++|++
T Consensus 156 L~~~-gp~i~D~~l~~L~~~V~~ 177 (178)
T PF04752_consen 156 LREL-GPGIRDPHLFALERRVRE 177 (178)
T ss_pred HHHh-CCCCCChHHHHHHHHHhh
Confidence 9999 555999999999999986
No 2
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-66 Score=418.13 Aligned_cols=177 Identities=55% Similarity=1.050 Sum_probs=169.9
Q ss_pred CeEEEecccCCCCCCCCceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHHHHHHH
Q 029633 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYL 80 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~~~~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~~l~~L 80 (190)
|||||||||||+|+|+|.++++|+|+||+|||||+|+||||||+.||||+||++..+++||||||+|+++.+.+ ++++|
T Consensus 10 lWVFGYGSLiW~Pgf~y~~~~~gfI~Gy~RrF~q~s~dHRGtp~~PGRv~TLi~~~e~~~wGvay~V~g~~~~~-~l~yl 88 (212)
T KOG3182|consen 10 LWVFGYGSLIWKPGFHYDESIPGFIKGYKRRFWQGSTDHRGTPEHPGRVATLIPYEEAITWGVAYRVRGKQASE-VLEYL 88 (212)
T ss_pred EEEEeecceeecCCCCccccchhhheehhhheeccccccCCCCCCCceeEEeecCCcceEeeEEEEecchhHHH-HHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999986665 99999
Q ss_pred HHhhhc-CcccceeeEEeCCCCCCCceEEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Q 029633 81 EVREKQ-YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALL 159 (190)
Q Consensus 81 d~RE~~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~A~~I~~a~G~sG~n~eYL~~l~~~l~ 159 (190)
+.||.+ |..+ .|+|++.+....+.+..++|||++|+ |++|+||.++++||+||+++.||||+|.|||++|+++|+
T Consensus 89 ~~RE~nGY~~~-~v~f~~e~~~~~p~v~~vlvyvaTp~---N~~ylGp~ple~iArqI~t~~GpsG~N~eYLf~La~am~ 164 (212)
T KOG3182|consen 89 NVRELNGYTTH-EVEFYPEDAAELPEVLGVLVYVATPD---NEYYLGPAPLEEIARQIVTARGPSGPNREYLFNLAKAMR 164 (212)
T ss_pred HHHhhcCccee-eeeeeccCCCCCCceEEEEEEEecCC---CccccCCccHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 999988 7777 99999988777788899999999999 999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHhc
Q 029633 160 ELECSGCEDKHVIDLANTVRRILS 183 (190)
Q Consensus 160 ~l~~~g~~D~~l~~L~~~v~~~~~ 183 (190)
++ .||+.|+||++|++.|++.+.
T Consensus 165 ~l-~p~~~D~hl~eL~~~Vrk~l~ 187 (212)
T KOG3182|consen 165 QL-FPGAEDEHLFELENEVRKYLV 187 (212)
T ss_pred Hc-CCCchhHHHHHHHHHHHHHHh
Confidence 99 999999999999999998765
No 3
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-58 Score=373.81 Aligned_cols=171 Identities=38% Similarity=0.694 Sum_probs=160.5
Q ss_pred CeEEEecccCCCCCCCCceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHHHHHHH
Q 029633 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYL 80 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~~~~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~~l~~L 80 (190)
+||||||||||||.|++.++.+|+++||+|+||+.|++||||+++||+|++|+ .||+|+||+|+||++++++ ++++|
T Consensus 12 ~WVFgYGSLmW~P~f~~~e~~~a~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~--~GGsc~GvafRip~~~~~~-v~~yL 88 (190)
T COG3703 12 LWVFGYGSLMWNPGFEFTEVRRATLHGYHRSFCLRSTDHRGTAEQPGLVLGLD--RGGSCEGVAYRIPEAHAEE-VLEYL 88 (190)
T ss_pred eEEEEecceeecCCccccceeEEEEecceeEEEEEEeeecCCcCCCceEEEee--CCCcEEEEEEEcCchhhHH-HHHHH
Confidence 69999999999999999999999999999999999999999999999999999 6999999999999988887 99999
Q ss_pred HHhhhc----CcccceeeEEeCCCCCCCceEEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHH
Q 029633 81 EVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEK 156 (190)
Q Consensus 81 d~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~A~~I~~a~G~sG~n~eYL~~l~~ 156 (190)
++||++ |.++ |+++.++ +++.++|++||++++ |++|.|+++.+++|.+|+.|+|+||+|.|||++|.+
T Consensus 89 ~~RE~~~t~~y~p~-~l~v~~~----~g~~~~al~~v~~~~---h~qyag~l~~~~~A~~ia~a~G~sG~n~eYL~~t~~ 160 (190)
T COG3703 89 REREMNYTLVYVPR-WLPVELE----GGRRVNALVFVGDRK---HPQYAGDLDAEQIAAIIAAAVGLSGPNAEYLFNTLQ 160 (190)
T ss_pred HHhhccccceeeeE-EEEEecC----CCcEEEEEEEEecCC---ccccCCCCcHHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 999995 7777 7777764 347899999999998 999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHhcch
Q 029633 157 ALLELECSGCEDKHVIDLANTVRRILSEE 185 (190)
Q Consensus 157 ~l~~l~~~g~~D~~l~~L~~~v~~~~~~~ 185 (190)
+|+++ ||+|+.|+.|...|.+.....
T Consensus 161 hL~~~---gi~d~~l~~l~~~v~~~~~~~ 186 (190)
T COG3703 161 HLRKL---GIRDHNLEDLLELVAALLAEQ 186 (190)
T ss_pred HHHhc---CCcchhHHHHHHHHHHHHHHh
Confidence 99999 999999999999998876543
No 4
>PHA03014 hypothetical protein; Provisional
Probab=99.81 E-value=1.6e-18 Score=139.14 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=110.5
Q ss_pred CeEEEecccCCCCCC--------CCceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcc
Q 029633 1 MWVFGYGSLIWKAGF--------HFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKED 72 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~--------~~~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~ 72 (190)
.|+|||||+|+...+ .......|.|.||.-+|.- | | ...|.++||+|++|+.|||++|+|+..
T Consensus 3 ~~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f-~----~--~~~Ga~ATIvp~~g~~V~Gvlw~i~~~-- 73 (163)
T PHA03014 3 KYYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCY-S----K--EIDSVIASIKKDDNGIVFGILYEFNES-- 73 (163)
T ss_pred eEEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEec-c----C--CcCCceEEEEECCCCEEEEEEEEeCHH--
Confidence 489999999987543 3445678999977666652 1 2 346788999999999999999999986
Q ss_pred hHHHHHHHHHhhhc----CcccceeeEEeCCCCCCCceEEEEEE--EEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCC
Q 029633 73 KEVAVTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVY--IASANKQLNSNYLGPASLEDIAKQIIQAEGPSGP 146 (190)
Q Consensus 73 ~~~~l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Y--v~~~~~~~n~~~~g~~~~~~~A~~I~~a~G~sG~ 146 (190)
.++.||+.|++ |.+. .++|.+.++ +..+.|++| +.++. ++.+ -+.-|
T Consensus 74 ---dl~~LD~~EGvp~~~Y~~~-~v~V~~~~~---~~~~~a~~Y~~~~~~~---~~~~-----------------~~~~P 126 (163)
T PHA03014 74 ---IMKKFDKQEFIDKNIYKLA-KMNVLDLED---EKIIEAQAYKAILDDD---NNMF-----------------YDAPN 126 (163)
T ss_pred ---HHHHHhhhcCCCcCceEEE-EEEEEeCCC---CcEEEEEEEehhcCCC---cccc-----------------cCCCC
Confidence 88999999994 8887 899987542 245899999 66654 4321 11247
Q ss_pred cHHHHHHHHHHHHhhccCCC---CChHHHHHHHHHHH
Q 029633 147 NRDYLFQLEKALLELECSGC---EDKHVIDLANTVRR 180 (190)
Q Consensus 147 n~eYL~~l~~~l~~l~~~g~---~D~~l~~L~~~v~~ 180 (190)
+..||.-+.++.++. |+ +.+|+..|++..+.
T Consensus 127 s~~Yl~~I~~Ga~e~---Gl~~~P~~Y~~~l~~~~~~ 160 (163)
T PHA03014 127 FNIYKDIIIDALIEN---NILDYPLWYIKHINNIFKE 160 (163)
T ss_pred hHHHHHHHHHHHHHh---CCCCCcHHHHHHHHHHHHH
Confidence 779999999999999 99 99999999987664
No 5
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.72 E-value=2.5e-17 Score=119.36 Aligned_cols=91 Identities=26% Similarity=0.390 Sum_probs=76.0
Q ss_pred EEEecccCCCCCC-----CCceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHHHH
Q 029633 3 VFGYGSLIWKAGF-----HFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAV 77 (190)
Q Consensus 3 vFgYGSLmw~~~~-----~~~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~~l 77 (190)
||+|||||+.+.+ ......+|+|+||++.|+..+ .+.+|++++++.|+|++|+++.+ ++
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~-----------~~p~~~~~~~~~v~G~v~~i~~~-----~l 64 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGS-----------GYPGLVPGPGARVWGELYEVDPE-----DL 64 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCC-----------ccCEEEeCCCCEEEEEEEEECHH-----HH
Confidence 6999999999987 456788999999999999754 34567777888999999999842 99
Q ss_pred HHHHHhhhc---CcccceeeEEeCCCCCCCceEEEEEEEE
Q 029633 78 TYLEVREKQ---YDKKAYLDLFTDPMATTPAVSGVMVYIA 114 (190)
Q Consensus 78 ~~Ld~RE~~---Y~~~~~v~v~~~~~~~~~~~~~al~Yv~ 114 (190)
+.||++|+. |.+. .++|++.++ ..++|++|+.
T Consensus 65 ~~LD~~E~~~~~Y~r~-~v~v~~~~~----~~~~a~~Y~~ 99 (99)
T cd06661 65 ARLDAFEGVPGGYRRE-EVEVELEDG----EGVEAWVYVA 99 (99)
T ss_pred HhhhhhcCCCCCeEEE-EEEEEeCCC----CEEEEEEEeC
Confidence 999999994 8887 999988642 3489999984
No 6
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=8.1e-15 Score=116.14 Aligned_cols=153 Identities=17% Similarity=0.256 Sum_probs=117.5
Q ss_pred eEEEecccCCCCCCCC-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHHH
Q 029633 2 WVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVA 76 (190)
Q Consensus 2 WvFgYGSLmw~~~~~~-----~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~~ 76 (190)
.+|||||+|.-..+++ ..-++|.|..|+..|...|..+ -|.++||.+.+|..|||++|+++-. .
T Consensus 25 lYFafGSNlL~~RIh~rnpsA~~~c~a~L~dfrLdFan~S~~W------~G~vATI~~t~GdeVWG~vWKm~~s-----n 93 (193)
T KOG4059|consen 25 LYFAFGSNLLIKRIHIRNPSAVRICPALLPDFRLDFANESAGW------SGSVATIVPTQGDEVWGTVWKMDLS-----N 93 (193)
T ss_pred hhhhcccchhhhheeecCCCceeeccccCcceeeecccccccc------ccceeEEecCCCCeEEEEEEEcccc-----c
Confidence 5899999999887765 3468999999999999877654 5678999999999999999999987 7
Q ss_pred HHHHHHhhhc----CcccceeeEEeCCCCCCCceEEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHH
Q 029633 77 VTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLF 152 (190)
Q Consensus 77 l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~A~~I~~a~G~sG~n~eYL~ 152 (190)
+..||..|++ |.++ .|.|.+.++ ....|-+|..+. -.=+...|-.+.-..|..+.=.++-..||+.
T Consensus 94 l~slDeQEgv~~G~Y~~~-~V~V~t~eg----~~itcR~Yl~sn-----l~~~P~~PSp~Yk~~i~~GAkEn~lP~dY~q 163 (193)
T KOG4059|consen 94 LPSLDEQEGVSQGIYEPR-TVYVKTHEG----ESITCRAYLLSN-----LYELPKQPSPTYKQCIVKGAKENSLPEDYVQ 163 (193)
T ss_pred CccchhhhcccccceEEE-EEEEecCCC----ceeehhHhhhhh-----hhhccCCCCchHHhhhhhcccccCCcHHHHH
Confidence 7789999976 9998 899988643 458899999863 1112223444556788888888999999998
Q ss_pred HHHHHHHhhccCCCCChHHHHHHH
Q 029633 153 QLEKALLELECSGCEDKHVIDLAN 176 (190)
Q Consensus 153 ~l~~~l~~l~~~g~~D~~l~~L~~ 176 (190)
+|...-..= .-|-.|.++..+.+
T Consensus 164 kL~aIe~Ng-faG~V~~~ie~~~k 186 (193)
T KOG4059|consen 164 KLRAIEHNG-FAGQVNSYIERKLK 186 (193)
T ss_pred HHhccccCC-cccchhhHHHHHHh
Confidence 775443332 33667777776654
No 7
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=99.18 E-value=9.8e-11 Score=83.84 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=62.1
Q ss_pred eeEEEEEEecCCcchHHHHHHHHHhhhc----CcccceeeEEeCCCCCCCceEEEEEEEEecCCCCCCCCCCCCCHHHHH
Q 029633 59 VCWGAAYKITKKEDKEVAVTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIA 134 (190)
Q Consensus 59 ~v~Gv~y~i~~~~~~~~~l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~A 134 (190)
.||||+|+|+.+ .++.||++|+. |.+. .|+|.+.++ ..+.|+||++++. +. +
T Consensus 1 ~V~Gvly~l~~~-----d~~~LD~~Eg~~~g~Y~~~-~v~V~~~~g----~~~~a~tY~~~~~----~~--~-------- 56 (83)
T PF13772_consen 1 RVWGVLYELSEE-----DLESLDRYEGVPIGAYRRI-EVTVSTADG----KPVEAFTYVANPK----PE--G-------- 56 (83)
T ss_dssp EEEEEEEEEEGG-----GHHHHHHHTTTTTTSEEEE-EEEEEETTC----EEEEEEEEEESSE----EE-----------
T ss_pred CEEEEEEEECHH-----HHHHHHHhcCCCCCCEEEE-EEEEEcCCC----CEEEEEEEEcCCC----CC--C--------
Confidence 489999999987 88999999984 7776 899988432 4599999999874 21 1
Q ss_pred HHHHhccCCCCCcHHHHHHHHHHHHhhccCCCCChHHHHH
Q 029633 135 KQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDL 174 (190)
Q Consensus 135 ~~I~~a~G~sG~n~eYL~~l~~~l~~l~~~g~~D~~l~~L 174 (190)
-|+.+||..+.++.++. |++..|+..|
T Consensus 57 ----------~Ps~~Yl~~i~~GA~e~---gLp~~Yv~~L 83 (83)
T PF13772_consen 57 ----------PPSDRYLDLILRGAREH---GLPAEYVEKL 83 (83)
T ss_dssp -------------HHHHHHHHHHHHHC---T--HHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHc---CCCHHHHhhC
Confidence 28999999999999999 9999999876
No 8
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=99.11 E-value=6.3e-10 Score=81.31 Aligned_cols=97 Identities=19% Similarity=0.145 Sum_probs=62.7
Q ss_pred EEEecccCCCCCCCCcee-eeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCC-eeEEEEEEecCCcchHHHHHHH
Q 029633 3 VFGYGSLIWKAGFHFDER-VVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGE-VCWGAAYKITKKEDKEVAVTYL 80 (190)
Q Consensus 3 vFgYGSLmw~~~~~~~~~-~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~-~v~Gv~y~i~~~~~~~~~l~~L 80 (190)
||.|||||.....+..-. ..+.+.+.......... . ..|...+|++++++ .|+|.+|.|+.. .++.|
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~yP~l~~~~~~~~V~G~l~~v~~~-----~l~~L 69 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLGGRYL--Y----GGGGYPALVPGEGSGRVEGELYEVDDE-----ELARL 69 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEEEEEE--E----TTSSCEEEESCTTSSEEEEEEEEE-HH-----HHHHH
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEEeEEE--e----CCCCCCEEEEcCCCCEEEEEEEEECHH-----HHHhh
Confidence 799999999876643111 12333333333331000 0 12445667776776 999999999764 79999
Q ss_pred HHhhh--c-CcccceeeEEeCCCCCCCceEEEEEEEEe
Q 029633 81 EVREK--Q-YDKKAYLDLFTDPMATTPAVSGVMVYIAS 115 (190)
Q Consensus 81 d~RE~--~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~ 115 (190)
|..|+ . |.|. .++|...++ ..++|+||+.+
T Consensus 70 D~~E~~~~~Y~R~-~v~v~~~~g----~~~~a~vYv~~ 102 (102)
T PF06094_consen 70 DEYEGEGSLYRRV-RVPVELGDG----EEVEAWVYVWN 102 (102)
T ss_dssp HHHTTTTTSEEEE-EEEEECCTS----SEEEEEEEEE-
T ss_pred HhhcCCCCceEEE-EEEEEeCCC----CEeEEEEEEEC
Confidence 99974 3 8887 899987543 34699999974
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.4e-05 Score=61.27 Aligned_cols=91 Identities=25% Similarity=0.371 Sum_probs=62.6
Q ss_pred EEEecccCCCCCCCC------ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHHH
Q 029633 3 VFGYGSLIWKAGFHF------DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVA 76 (190)
Q Consensus 3 vFgYGSLmw~~~~~~------~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~~ 76 (190)
||-||||.-...-+. ..-.-+.++||+.-.-. +..|| +++. .+.|+|=+|++++. .
T Consensus 4 vfVYGTLr~Ge~N~~~~~~~~~~~~~~~~~gy~ly~lg--------~~YP~----~~~g-~~~V~Gevy~~d~~-----~ 65 (120)
T COG2105 4 VFVYGTLRPGEGNHHRYLKGARFLGEASTKGYQLYDLG--------PGYPG----LVPG-EGKVHGEVYRIDEE-----T 65 (120)
T ss_pred EEEEeccCCCCcchHHHHhcCcccCcceeeeeeeeccC--------CCCcE----EcCC-CCEEEEEEEEECHH-----H
Confidence 899999985543221 12334567775543322 22554 4442 45999999999943 9
Q ss_pred HHHHHHhhhc--CcccceeeEEeCCCCCCCceEEEEEEEEecC
Q 029633 77 VTYLEVREKQ--YDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (190)
Q Consensus 77 l~~Ld~RE~~--Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~ 117 (190)
++.||.-|.. |+++ ++.+.+..+ . ..|++|+.+.+
T Consensus 66 l~~LDelE~~~~y~r~-~v~v~~~~G---~--~~aw~Y~y~~~ 102 (120)
T COG2105 66 LEALDELEDYGGYYRR-EVEVTTPLG---S--KEAWLYVYAER 102 (120)
T ss_pred HhhhhhhhccCceEEE-EEEEEcCCC---C--EEEEEEEEcCC
Confidence 9999999998 7887 887777543 2 37999999876
No 10
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.99 E-value=1.2 Score=35.75 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=61.0
Q ss_pred eEEEecccCCCCCCCCceeeeeEEeceEEEEEeecccCCCCCCCCceeeE-------eeeC--CCCeeEEEEEEecCCcc
Q 029633 2 WVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVT-------LEPA--EGEVCWGAAYKITKKED 72 (190)
Q Consensus 2 WvFgYGSLmw~~~~~~~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vlt-------l~~~--~~~~v~Gv~y~i~~~~~ 72 (190)
-||-||.|=-..+-++- ..-.+.|..+-++++-+ +...| +|.+ |... .|-.|.|=+|.|++.
T Consensus 8 lvFVYGTLKrg~pNh~~--L~d~~~g~A~F~gr~~T----~~kyP-LVigt~ynIPfLLnkpGsG~~V~GElY~Vd~r-- 78 (168)
T KOG4450|consen 8 LVFVYGTLKRGQPNHFL--LEDLINGDAVFIGRGTT----LLKYP-LVIGTRYNIPFLLNKPGSGYHVEGELYEVDER-- 78 (168)
T ss_pred EEEEEeeecCCCCCchh--hhhccCCceEEEEecee----ccccc-eEeecccCCceEEcCCCCcceeeeEEEEeCHH--
Confidence 48999998654333321 11223777776666433 23445 3333 2222 255699999999975
Q ss_pred hHHHHHHHHHhhhc---CcccceeeEEeCCC---CCCCceEEEEEEEE
Q 029633 73 KEVAVTYLEVREKQ---YDKKAYLDLFTDPM---ATTPAVSGVMVYIA 114 (190)
Q Consensus 73 ~~~~l~~Ld~RE~~---Y~~~~~v~v~~~~~---~~~~~~~~al~Yv~ 114 (190)
-|..||.-|.. |.|. .+.|...++ .+++.++.|.+|.-
T Consensus 79 ---mL~~LD~lE~~~~~Y~R~-~i~v~~~ede~eg~g~~~v~c~~Y~~ 122 (168)
T KOG4450|consen 79 ---MLSRLDELEGCPNHYERE-PIRVIEEEDEEEGEGGVTVQCAVYAH 122 (168)
T ss_pred ---HHhhhHhhcccHHHhhhh-hhHHHHhhhhcccCCCceeeehhHHH
Confidence 89999999987 6665 666654332 23344677777754
No 11
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=59.78 E-value=13 Score=32.67 Aligned_cols=74 Identities=12% Similarity=0.216 Sum_probs=51.1
Q ss_pred CCCceeeEeeeCCCCeeEEEEEEecCCcchHHHHHHHHHhhhcCcccceeeEEeCCCCCCC----------ceEEEEEEE
Q 029633 44 KFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTP----------AVSGVMVYI 113 (190)
Q Consensus 44 e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~~l~~Ld~RE~~Y~~~~~v~v~~~~~~~~~----------~~~~al~Yv 113 (190)
..-|++.||+-.+-|.|-|.+|.-.+. .-..++-+-++|.-+.--.+++.+..++. .-.+|+.|+
T Consensus 147 r~dgl~~tlvv~~~g~~Lglvysskes-----~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~ 221 (359)
T KOG4311|consen 147 RKDGLVATLVVVDTGAVLGLVYSSKES-----LATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFL 221 (359)
T ss_pred CCCCeEEEEEehhhhhhhhhhcccHHH-----HHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEE
Confidence 345788999888889999999975543 55689999888444413445554432221 115689999
Q ss_pred EecCCCCCCCCC
Q 029633 114 ASANKQLNSNYL 125 (190)
Q Consensus 114 ~~~~~~~n~~~~ 125 (190)
++++ +|.|.
T Consensus 222 v~q~---g~gfC 230 (359)
T KOG4311|consen 222 VTQD---GPGFC 230 (359)
T ss_pred EecC---CCccc
Confidence 9998 98764
No 12
>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.42 E-value=8.8 Score=30.83 Aligned_cols=9 Identities=56% Similarity=1.117 Sum_probs=7.8
Q ss_pred CeEEEeccc
Q 029633 1 MWVFGYGSL 9 (190)
Q Consensus 1 ~WvFgYGSL 9 (190)
.|.||||+|
T Consensus 100 ~~gf~yGTL 108 (168)
T COG4762 100 VRGFGYGTL 108 (168)
T ss_pred eeEEeeccc
Confidence 489999997
No 13
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=28.08 E-value=73 Score=21.73 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=26.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHhc
Q 029633 140 AEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVRRILS 183 (190)
Q Consensus 140 a~G~sG~n~eYL~~l~~~l~~l~~~g~~D~~l~~L~~~v~~~~~ 183 (190)
++|..+...|++.....-|++- +.++..|.+.+.+...
T Consensus 19 ~sG~Y~s~SEVir~aLR~le~~------e~~~~~Lr~~i~~g~~ 56 (69)
T TIGR02606 19 QSGRYGSASEVVRAALRLLEER------ETKLQALRDAIEEGEQ 56 (69)
T ss_pred HCCCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHh
Confidence 5899999999996555544444 4567777777766543
No 14
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=27.33 E-value=2.6e+02 Score=23.54 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHhccCC-------CCCcHHHHHHHHHHHHhh
Q 029633 124 YLGPASLEDIAKQIIQAEGP-------SGPNRDYLFQLEKALLEL 161 (190)
Q Consensus 124 ~~g~~~~~~~A~~I~~a~G~-------sG~n~eYL~~l~~~l~~l 161 (190)
|.-..+..++.+..|.|-|. .|++.+|+..|.+.|+++
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~ 84 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTL 84 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHc
Confidence 33333344667777888873 467889999999999998
No 15
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=25.59 E-value=32 Score=28.58 Aligned_cols=8 Identities=50% Similarity=1.680 Sum_probs=7.0
Q ss_pred CeEEEecc
Q 029633 1 MWVFGYGS 8 (190)
Q Consensus 1 ~WvFgYGS 8 (190)
+|+|||++
T Consensus 19 IWl~gy~~ 26 (198)
T PF08480_consen 19 IWLFGYDG 26 (198)
T ss_pred EEEEecCC
Confidence 69999985
No 16
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=24.73 E-value=84 Score=23.87 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=26.7
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHhhccCCCCChH
Q 029633 121 NSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKH 170 (190)
Q Consensus 121 n~~~~g~~~~~~~A~~I~~a~G~sG~n~eYL~~l~~~l~~l~~~g~~D~~ 170 (190)
+|+|---++.+++++.. ||+.+-+..+...|++. |+....
T Consensus 41 s~~Ygk~Lt~~e~~~~~-------~p~~~~v~~V~~wL~~~---G~~~~~ 80 (143)
T PF09286_consen 41 SPNYGKYLTPEEFAALF-------APSPEDVAAVKSWLKSH---GLTVVE 80 (143)
T ss_dssp STTTT----HHHHHHHH-------S--HHHHHHHHHHHHHC---T-EEEE
T ss_pred CcccccCCCHHHHHHHH-------CCCHHHHHHHHHHHHHc---CCceeE
Confidence 78776678888887766 68999999999999998 875544
No 17
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=23.12 E-value=77 Score=26.06 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 029633 144 SGPNRDYLFQLEKALLELECSGCEDKHVIDLANTV 178 (190)
Q Consensus 144 sG~n~eYL~~l~~~l~~l~~~g~~D~~l~~L~~~v 178 (190)
+--.+.||..|++.| ++++.-+..|++.+
T Consensus 159 ~~~Er~YL~~LA~aL------~L~~~lv~~le~~~ 187 (188)
T PF04391_consen 159 TFAERAYLDELAQAL------GLDPDLVAQLEQQA 187 (188)
T ss_pred CHHHHHHHHHHHHHh------CcCHHHHHHHHHHc
Confidence 445688999999888 99999999999876
No 18
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.44 E-value=1.5e+02 Score=24.12 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHhcchhh
Q 029633 125 LGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVRRILSEEDS 187 (190)
Q Consensus 125 ~g~~~~~~~A~~I~~a~G~sG~n~eYL~~l~~~l~~l~~~g~~D~~l~~L~~~v~~~~~~~~~ 187 (190)
..+.+++.+|++| +...=|+.+..+|+.|. -.=.....+++++.+++..+++
T Consensus 102 mdDFsP~~Va~qV--------p~L~kLLeaR~~L~~L~---~~ldg~~~~e~~l~~lL~n~~~ 153 (169)
T COG3516 102 MDDFSPDAVARQV--------PELKKLLEARTALADLK---GPLDGNPAFEELLQDLLKNEEL 153 (169)
T ss_pred cccCCHHHHHHhh--------HHHHHHHHHHHHHHHHh---ccccCcHHHHHHHHHHHcCHHH
Confidence 3456789999999 77778899999999983 2333445566777776665544
No 19
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=21.51 E-value=62 Score=24.47 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=18.3
Q ss_pred eEEEEEeecccCCCCCCCCceeeEe
Q 029633 28 YRRVFHQGSTDHRGTPKFPGRTVTL 52 (190)
Q Consensus 28 y~R~F~~~s~~hRGt~e~PG~vltl 52 (190)
-....||.....|-...-||+||+|
T Consensus 85 ~~~~vWqS~~~d~~~~SlPGLVLAI 109 (109)
T PF07107_consen 85 HCPCVWQSRLPDRAGKSLPGLVLAI 109 (109)
T ss_pred CCCceecccccccccCCcCCEEEeC
Confidence 3455677777677777889999986
No 20
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=21.16 E-value=1.4e+02 Score=20.63 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHH
Q 029633 148 RDYLFQLEKALLELECSGCEDKHVIDLANTVRR 180 (190)
Q Consensus 148 ~eYL~~l~~~l~~l~~~g~~D~~l~~L~~~v~~ 180 (190)
.||=.+|++.|+.- .| |.-=..|+.+|.+
T Consensus 12 tEyKKrL~e~l~~k-~P---~at~~~l~~lve~ 40 (68)
T PF09164_consen 12 TEYKKRLAERLRAK-LP---DATPTELKELVEK 40 (68)
T ss_dssp HHHHHHHHHHHHHH--T---TS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CC---CCCHHHHHHHHHH
Confidence 68999999999997 44 4555555555554
No 21
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.65 E-value=1.2e+02 Score=25.75 Aligned_cols=28 Identities=39% Similarity=0.466 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHH
Q 029633 147 NRDYLFQLEKALLELECSGCEDKHVIDLANTVRR 180 (190)
Q Consensus 147 n~eYL~~l~~~l~~l~~~g~~D~~l~~L~~~v~~ 180 (190)
-+-||..|+..| |++|.-+..||+.|..
T Consensus 193 Er~YL~~La~~L------~L~dalvd~lE~qv~~ 220 (225)
T COG2979 193 ERSYLNALAGAL------GLPDALVDHLERQVGQ 220 (225)
T ss_pred HHHHHHHHHHHh------CCCHHHHHHHHHHHHh
Confidence 456888888777 9999999999999875
No 22
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=20.26 E-value=2.4e+02 Score=18.08 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 029633 127 PASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTVR 179 (190)
Q Consensus 127 ~~~~~~~A~~I~~a~G~sG~n~eYL~~l~~~l~~l~~~g~~D~~l~~L~~~v~ 179 (190)
..|+++|.+.+.-...+.-++.+...-+.+.+.++ |..+.+|.+...
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~~~l~~~~~~i------~~~i~~L~~~~~ 60 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRRALLEEKLEEI------EEQIAELQALRA 60 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 35788888888555554555556665566666655 455555544433
Done!