Query 029633
Match_columns 190
No_of_seqs 139 out of 713
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 02:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cry_A Gamma-glutamyl cyclotra 100.0 4.6E-29 1.6E-33 202.1 7.7 157 1-180 17-182 (188)
2 2qik_A UPF0131 protein YKQA; N 99.9 6.2E-28 2.1E-32 207.0 10.1 135 1-161 128-274 (285)
3 2jqv_A AT3G28950, AIG2 protein 99.8 9.1E-19 3.1E-23 138.9 8.3 130 1-161 9-145 (165)
4 2g0q_A AT5G39720.1 protein; st 99.7 2.5E-17 8.6E-22 131.9 9.1 130 1-161 18-154 (173)
5 1xhs_A Hypothetical UPF0131 pr 98.9 7.5E-09 2.6E-13 78.0 8.4 88 1-117 1-96 (121)
6 3jud_A AIG2-like domain-contai 98.8 1.2E-08 4.2E-13 80.0 6.9 105 2-125 3-129 (153)
7 1v30_A Hypothetical UPF0131 pr 98.7 1.5E-08 5E-13 76.8 6.6 87 1-117 8-101 (124)
8 1vkb_A Hypothetical protein; g 98.6 1.5E-07 5.1E-12 74.3 8.9 100 2-116 15-131 (161)
9 2qik_A UPF0131 protein YKQA; N 97.9 4.6E-05 1.6E-09 64.7 9.9 90 2-117 4-102 (285)
10 3cry_A Gamma-glutamyl cyclotra 77.2 1.8 6.2E-05 33.8 3.4 30 144-176 133-162 (188)
11 2dah_A Ubiquilin-3; UBA domain 40.4 26 0.0009 21.9 3.1 39 146-188 5-52 (54)
12 4fp9_B Mterf domain-containing 28.0 86 0.0029 26.7 5.3 48 128-178 90-137 (335)
13 1pyo_B Caspase-2; apoptosis, c 25.2 69 0.0024 22.4 3.6 37 145-185 34-70 (105)
14 4fjo_A DNA repair protein REV1 20.3 1.5E+02 0.0051 20.5 4.5 53 121-177 2-55 (97)
No 1
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=99.95 E-value=4.6e-29 Score=202.06 Aligned_cols=157 Identities=16% Similarity=0.256 Sum_probs=125.4
Q ss_pred CeEEEecccCCCCCCCC-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHH
Q 029633 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~~~-----~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~ 75 (190)
+||||||||||++.|.. ....+|+|+||+|.|++.|.+| ++.++|.+++|++++++.|||++|+|+++
T Consensus 17 ~~~FaYGSlm~~~~~~~~~~~~~~~~~a~l~gy~l~f~~~~~~~--~~~~~g~~~~lv~~~g~~V~G~ly~v~~~----- 89 (188)
T 3cry_A 17 FLYFAYGSNLLTERIHLRNPSAAFFCVARLQDFKLDFGNSQGKT--SQTWHGGIATIFQSPGDEVWGVVWKMNKS----- 89 (188)
T ss_dssp EEEEECSGGGSHHHHHHHCTTCEEEEEEEEEEEEEEEEEETTCC--CTTTSSCEEEEEEEEEEEEEEEEEEEEGG-----
T ss_pred EEEEEEccCCCHHHHHhhCCCCceEEEEEEcCEEEEECCCCCCC--cCCCCCeeEeEEeCCCCEEEEEEEEECHH-----
Confidence 59999999999987653 3567999999999999998777 67778999999998899999999999975
Q ss_pred HHHHHHHhhhc----CcccceeeEEeCCCCCCCceEEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHH
Q 029633 76 AVTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYL 151 (190)
Q Consensus 76 ~l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~A~~I~~a~G~sG~n~eYL 151 (190)
.++.||+||+. |.+. .|+|.+.++ ..+.|+||++++. ++ ..|.++.+.+|+++.+.+|.+.+|+
T Consensus 90 ~l~~LD~~Eg~~~g~Y~r~-~v~V~~~~g----~~~~a~vYv~~~~---~~----~~ps~~Yl~~i~~g~~~~gl~~~y~ 157 (188)
T 3cry_A 90 NLNSLDEQQGVKSGMYVVI-EVKVATQEG----KEITCRSYLMTNY---ES----APPSPQYKKIICMGAKENGLPLEYQ 157 (188)
T ss_dssp GHHHHHHHTTGGGTSCEEE-EEEEEETTC----CEEEEEEEECSSE---EE----CCCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHhCCCCCcEEEE-EEEEEeCCC----CEEEEEEEEecCC---CC----CCChHHHHHHHHHHHHHhCcCHHHH
Confidence 78999999983 8887 899988543 3589999999875 43 3466788888888888888899998
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHHH
Q 029633 152 FQLEKALLELECSGCEDKHVIDLANTVRR 180 (190)
Q Consensus 152 ~~l~~~l~~l~~~g~~D~~l~~L~~~v~~ 180 (190)
.+|... ... |..-+.+.+|++.++.
T Consensus 158 ~~L~~~-~~~---g~~~p~~~~~~~~~~~ 182 (188)
T 3cry_A 158 EKLKAI-EPN---DYTGKVSEEIEDIIKK 182 (188)
T ss_dssp HHHHTC-CCC---CCCSCCCHHHHHHHHC
T ss_pred HHHhcc-ccc---CCCCCCcHHHHHHHHh
Confidence 776542 222 5455566777766554
No 2
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.95 E-value=6.2e-28 Score=206.95 Aligned_cols=135 Identities=20% Similarity=0.309 Sum_probs=115.1
Q ss_pred CeEEEecccCCCCCCCC--------ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcc
Q 029633 1 MWVFGYGSLIWKAGFHF--------DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKED 72 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~~~--------~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~ 72 (190)
+||||||||||++.|.. ....+|+|+||+|+|| .+.+| |.++||+++ ++.|||++|+|+++
T Consensus 128 ~~yFaYGSnm~~~~~~~~~~p~~~~~~~~~a~L~G~~l~F~-~~~~~-------~g~a~iv~~-g~~v~Gvly~i~~~-- 196 (285)
T 2qik_A 128 IYYFAYGSCMDNARFQKAGVDHYFQDPVGRAVLKGYTTRFT-LKRED-------GSRADMLED-GGTTEGVLYRIPYS-- 196 (285)
T ss_dssp EEEEECSGGGSSHHHHHHTCGGGSSCEEEEEEEETCEEEEE-EEETT-------EEEEEEECS-SCEEEEEEEEECGG--
T ss_pred EEEEEechhcCHhhcccccCCcccceEeEEEEEeCeEEEcC-cCCCC-------CeeeeEEEC-CCEEEEEEEEECHH--
Confidence 59999999999998876 2236999999999999 55554 556899998 99999999999975
Q ss_pred hHHHHHHHHHhhhc----CcccceeeEEeCCCCCCCceEEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcH
Q 029633 73 KEVAVTYLEVREKQ----YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNR 148 (190)
Q Consensus 73 ~~~~l~~Ld~RE~~----Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~A~~I~~a~G~sG~n~ 148 (190)
++++||+||+. |.+. +|+|.+.++ ..+.|+|||+++. + .+..|.++.+.+|+++.+ +|.+.
T Consensus 197 ---~l~~LD~~Eg~~~g~Y~r~-~v~v~~~~g----~~~~a~~Yv~~~~---~---~~~~Ps~~Yl~~i~~g~~-~g~~~ 261 (285)
T 2qik_A 197 ---ALSYLYKREGVESLTYRPA-FVDVEAGGR----HYKDCLTFLVLQK---E---AEIAPPQHYQIEIERGAE-LYLSP 261 (285)
T ss_dssp ---GHHHHHHHTTTTTTSEEEE-EEEEEETTE----EEEEEEEEEESSC---C---CCCCCCHHHHHHHHHHHH-HHSCH
T ss_pred ---HHHHHHHhhCCCCCceEEE-EEEEEECCC----CEEEEEEEEecCC---C---CCCCCHHHHHHHHHHHHh-cCCCH
Confidence 78999999973 8887 999988542 4589999999885 4 356778999999999999 99999
Q ss_pred HHHHHHHHHHHhh
Q 029633 149 DYLFQLEKALLEL 161 (190)
Q Consensus 149 eYL~~l~~~l~~l 161 (190)
||+.+|.+.++.+
T Consensus 262 ~Y~~~l~~~~~~~ 274 (285)
T 2qik_A 262 EFTEKLKRHMNSL 274 (285)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999998
No 3
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=9.1e-19 Score=138.86 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=95.3
Q ss_pred CeEEEecccCCCCCCCC-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEE-ecCCcchH
Q 029633 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYK-ITKKEDKE 74 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~~~-----~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~-i~~~~~~~ 74 (190)
+|||+||||||.+.++. ....+|+|+||+|.|+.. ..+|++| +.+++.|+|++|+ |++
T Consensus 9 ~~vFvYGSL~~~~~~~~~~~~~~~~~~a~l~Gy~~~~~~~-------~~yP~lv----~~~~~~V~G~v~~~v~~----- 72 (165)
T 2jqv_A 9 HNVFVYGSILEPAVAAVILDRTADTVPAVLHGYHRYKLKG-------LPYPCIV----SSDSGKVNGKVITGVSD----- 72 (165)
T ss_dssp EEEEESSTTSSHHHHHHHTSSCCEEEEEEEETCEECCCTT-------SSSCCEE----SCCSSEEEEEEEEEECH-----
T ss_pred eEEEEEcCCCCchhhHHHhCCCCccceEEEeCeEEEecCC-------CCCCEEE----ECCCCEEEEEEEEeCCH-----
Confidence 59999999999988754 568899999999999742 2456554 4578999999997 663
Q ss_pred HHHHHHHHhhhc-CcccceeeEEeCCCCCCCceEEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHH
Q 029633 75 VAVTYLEVREKQ-YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQ 153 (190)
Q Consensus 75 ~~l~~Ld~RE~~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~A~~I~~a~G~sG~n~eYL~~ 153 (190)
+.|+.||.||+. |.+. .++|.+.++ ...+.|++|+.++. ..+--.|+-+.++..+. .-.+|+..
T Consensus 73 ~~l~~LD~~E~~~Y~R~-~v~v~~~dg---~~~~~a~vYv~~~~--~~~i~~G~W~~~~~~~~---------~~~~~~~~ 137 (165)
T 2jqv_A 73 AELNNFDVIEGNDYERV-TVEVVRMDN---SEKVKVETYVWVNK--DDPRMYGEWDFEEWRVV---------HAEKFVET 137 (165)
T ss_dssp HHHHHHHHTTTTSEEEE-EEEEEETTT---TEEEEEEEEEETTT--TSCCSCSCCCHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHhccCCcEEE-EEEEEECCC---CeEEEEEEEEECCC--cccccCCCcCHHHHHHH---------HHHHHHHH
Confidence 389999999976 8888 899988542 23468999999764 23333455555553322 23677777
Q ss_pred HHHHHHhh
Q 029633 154 LEKALLEL 161 (190)
Q Consensus 154 l~~~l~~l 161 (190)
+...+..+
T Consensus 138 t~~~~~~~ 145 (165)
T 2jqv_A 138 FRKMLEWN 145 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777766
No 4
>2g0q_A AT5G39720.1 protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=2.5e-17 Score=131.93 Aligned_cols=130 Identities=18% Similarity=0.303 Sum_probs=96.4
Q ss_pred CeEEEecccCCCCCCCC-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEE-ecCCcchH
Q 029633 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYK-ITKKEDKE 74 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~~~-----~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~-i~~~~~~~ 74 (190)
+|||+||||||.+.+.. ....+|+|+||+|.+ . +| ...| +|++.+++.|+|++|. |+++
T Consensus 18 ~~vFvYGSL~~~~~~~~~l~~~~~~~~A~l~Gy~l~~-~-----~~-~~yP----~lv~~~g~~V~G~v~~~v~~~---- 82 (173)
T 2g0q_A 18 HNVFVYGSFQDPDVINVMLDRTPEIVSATLPGFQRFR-L-----KG-RLYP----CIVPSEKGEVHGKVLMGVTSD---- 82 (173)
T ss_dssp EEEEECSGGGCHHHHHHHTSSCCEEEEEEEETCEECC-C-----CS-SSCC----CEECCTTCEEEEEEEEEECHH----
T ss_pred EEEEEEcCCCCCccCHHHhcCCCceeEEEEcCeEEEe-e-----CC-Ceee----EEEECCCCEEEEEEEEEcCHH----
Confidence 48999999999986432 356899999999643 2 11 2345 5556678999998875 7643
Q ss_pred HHHHHHHHhhhc-CcccceeeEEeCCCCCCCceEEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHH
Q 029633 75 VAVTYLEVREKQ-YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQ 153 (190)
Q Consensus 75 ~~l~~Ld~RE~~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~~~~n~~~~g~~~~~~~A~~I~~a~G~sG~n~eYL~~ 153 (190)
.++.||.+|+. |.+. .++|.+.++ +..+.|+||+++++ ..+++.+..+.++-.+. ....|+..
T Consensus 83 -~l~~LD~~Eg~~Y~R~-~v~V~~~dg---~~~v~A~vYv~~~~--~~~~~~~~~~~~~W~~~---------~~~~~~~~ 146 (173)
T 2g0q_A 83 -ELENLDAVEGNEYERV-TVGIVREDN---SEKMAVKTYMWINK--ADPDMFGEWNFEEWKRL---------HKKKFIET 146 (173)
T ss_dssp -HHHHHHHHHTTTEEEE-EEEEEESSS---SCEEEEEEEEESCS--SCSSSCCCCHHHHHHHH---------HHHHHHHH
T ss_pred -HHHHHHHHhhcCCEEE-EEEEEECCC---CeEEEEEEEEEcCc--cccccCCCcCHHHHHHH---------hHHHHHHH
Confidence 89999999987 8887 899988542 23589999999875 23567777777664432 24679999
Q ss_pred HHHHHHhh
Q 029633 154 LEKALLEL 161 (190)
Q Consensus 154 l~~~l~~l 161 (190)
..+.++..
T Consensus 147 ~~~~m~~~ 154 (173)
T 2g0q_A 147 FKKIMECK 154 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999988
No 5
>1xhs_A Hypothetical UPF0131 protein YTFP; structure, autostructure, northeast structural genomics consortium, NESG, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.269.1.1
Probab=98.87 E-value=7.5e-09 Score=78.04 Aligned_cols=88 Identities=22% Similarity=0.346 Sum_probs=65.1
Q ss_pred CeEEEecccCCCCCCCC-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHH
Q 029633 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~~~-----~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~ 75 (190)
|.||.|||||-...... ....+|++.||++.+. | ..|+.+.+ + +.|+|.+|+|+++
T Consensus 1 ~~vFvYGTL~~g~~~~~~l~~a~~~g~a~l~gy~L~~~-------g--~yP~lv~~----~-g~V~Gevy~v~~~----- 61 (121)
T 1xhs_A 1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSL-------G--HYPGAVPG----N-GTVHGEVYRIDNA----- 61 (121)
T ss_dssp CEEEECSCTTCCCTTTHHHHTCEEEEEEEEEEEEEEEC-------S--SSEEEEEE----E-EEEEEEEEECCHH-----
T ss_pred CEEEEECCCCCcccchhhcCCCcEEEEEEEeCcEEEEe-------c--CCCeEEec----C-CEEEEEEEEeCHH-----
Confidence 57999999998766532 2345699999998864 2 36776643 3 4999999999753
Q ss_pred HHHHHHHhhhc---CcccceeeEEeCCCCCCCceEEEEEEEEecC
Q 029633 76 AVTYLEVREKQ---YDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (190)
Q Consensus 76 ~l~~Ld~RE~~---Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~ 117 (190)
.|+.||.-|.. |.|. .+++ .+ ..|++|+.++.
T Consensus 62 ~l~~LD~~Eg~~~~Y~R~-~v~~--~~-------g~a~vY~~~~~ 96 (121)
T 1xhs_A 62 TLAELDALRTRGGEYARQ-LIQT--PY-------GSAWMYVYQRP 96 (121)
T ss_dssp HHHHHHHHHSTTSCEEEE-EEEE--TT-------EEEEEEEECSC
T ss_pred HHHHHHHhcCCCCCEEEE-EEEc--CC-------CEEEEEEECCc
Confidence 89999999973 8887 6763 21 37999998754
No 6
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase, gamma-glutamylamine cyclotransferase, gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} SCOP: d.269.1.1 PDB: 3jub_A 3juc_A
Probab=98.77 E-value=1.2e-08 Score=79.95 Aligned_cols=105 Identities=17% Similarity=0.274 Sum_probs=66.1
Q ss_pred eEEEecccCCCCCCC-Cc---eeeeeEEeceEEEEEeecccCCCCCCCCcee--------eEeeeCCCCeeEEEEEEecC
Q 029633 2 WVFGYGSLIWKAGFH-FD---ERVVGFIKGYRRVFHQGSTDHRGTPKFPGRT--------VTLEPAEGEVCWGAAYKITK 69 (190)
Q Consensus 2 WvFgYGSLmw~~~~~-~~---~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~v--------ltl~~~~~~~v~Gv~y~i~~ 69 (190)
-||-||+|+-...-+ .- ....|.+.|-.+.. ...|+.+ +...+..|+.|+|.+|+|++
T Consensus 3 ~vFVYGTL~~G~~Nh~~l~~~~~~~A~~~G~~~t~----------~~Ypl~~~g~~~~P~l~~~p~~g~~V~G~ly~v~~ 72 (153)
T 3jud_A 3 LVFVYGTLKRGQPNHRVLRDGAHGSAAFRARGRTL----------EPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVDE 72 (153)
T ss_dssp EEEECSTTSTTSTTGGGGTCGGGCCEEEEEEEEES----------SCBCEEEETTTTEEEEBSCTTSSBCCEEEEEEECH
T ss_pred EEEEeCCCCCCCcChHHHhcCcCCCeEEEEEEEeC----------CCccEEEecCCCCceEEecCCCCCEEEEEEEEECH
Confidence 489999999764422 11 12235555543211 2233333 22233335689999999985
Q ss_pred CcchHHHHHHHHHhhhc---CcccceeeEEeCCC-------CCCCceEEEEEEEEecCCCCCCCCC
Q 029633 70 KEDKEVAVTYLEVREKQ---YDKKAYLDLFTDPM-------ATTPAVSGVMVYIASANKQLNSNYL 125 (190)
Q Consensus 70 ~~~~~~~l~~Ld~RE~~---Y~~~~~v~v~~~~~-------~~~~~~~~al~Yv~~~~~~~n~~~~ 125 (190)
. .|+.||+.|.. |.|. .++|.+.+. ...+..+.|+||+.+.. ++++.
T Consensus 73 ~-----~l~~LD~~Eg~~~~Y~R~-~v~V~~~~~~~~~~~~~~~g~~v~A~vYv~~~~---~~~~~ 129 (153)
T 3jud_A 73 R-----MLRFLDDFQSCPALYQRT-VLRVQLLEDRAPGAEEPPAPTAVQCFVYSRATF---PPEWA 129 (153)
T ss_dssp H-----HHHHHHHHTTTTTSCEEE-EEEEEEEC------CCSCCCCEEEEEEEEBCCC---CGGGG
T ss_pred H-----HHHHHHHhcCCCCceEEE-EEEEEeeccccccccccCCCCEEEEEEEEcCCC---Ccccc
Confidence 3 89999999983 8887 899987521 01235699999999865 55443
No 7
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural genomics, unknown function; HET: NHE; 1.40A {Pyrococcus horikoshii} SCOP: d.269.1.1
Probab=98.75 E-value=1.5e-08 Score=76.81 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred CeEEEecccCCCCCCCC-----ceeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHH
Q 029633 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (190)
Q Consensus 1 ~WvFgYGSLmw~~~~~~-----~~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~ 75 (190)
+.||.|||||....... ....+|.+.||++. . | . .|+.+.+ + +.|+|.+|+|+++
T Consensus 8 ~~vFVYGTL~~g~~n~~~l~~a~~~g~a~l~gy~L~--~------g-~-yP~lv~~----~-g~V~Gev~~v~~~----- 67 (124)
T 1v30_A 8 VRIAVYGTLRKGKPLHWYLKGAKFLGEDWIEGYQLY--F------E-Y-LPYAVKG----K-GKLKVEVYEVDKE----- 67 (124)
T ss_dssp EEEEECSTTSTTSTTGGGGTTSEEEEEEEEEEEEEE--E------S-S-SEEEEEE----E-EEEEEEEEEECHH-----
T ss_pred cEEEEECCCCCchHhHHhcCCCcEEEEEEEeeEEEE--E------C-C-CCEEEec----C-CEEEEEEEEECHH-----
Confidence 36999999998876532 22467889999887 2 2 1 6766643 3 4499999999753
Q ss_pred HHHHHHHhh-hc-CcccceeeEEeCCCCCCCceEEEEEEEEecC
Q 029633 76 AVTYLEVRE-KQ-YDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (190)
Q Consensus 76 ~l~~Ld~RE-~~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~ 117 (190)
.|+.||..| .. |.|. .|. +.+ + .|++|+.++.
T Consensus 68 ~l~~LD~~E~~~~Y~R~-~V~--~~~---g----~A~vY~~~~~ 101 (124)
T 1v30_A 68 TFERINEIEIGTGYRLV-EVS--TKF---G----KAFLWEWGSK 101 (124)
T ss_dssp HHHHHTTCGGGGGEEEE-EEC--CTT---S----CEEEEEECSC
T ss_pred HHHHhhhccCCCCeEEE-EEE--cCC---C----EEEEEEeCCc
Confidence 899999999 44 7776 432 321 2 2999998653
No 8
>1vkb_A Hypothetical protein; gamma-glutamyl cyclotransferase-like fold, structural genomi center for structural genomics, JCSG, protein structure INI PSI; 1.90A {Mus musculus} SCOP: d.269.1.1 PDB: 2kl2_A
Probab=98.62 E-value=1.5e-07 Score=74.26 Aligned_cols=100 Identities=17% Similarity=0.279 Sum_probs=66.3
Q ss_pred eEEEecccCCCCC-CCC-c------ee--eee-EEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCC
Q 029633 2 WVFGYGSLIWKAG-FHF-D------ER--VVG-FIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKK 70 (190)
Q Consensus 2 WvFgYGSLmw~~~-~~~-~------~~--~~a-~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~ 70 (190)
.||-||+|+=... ... . -+ ..+ ++.||...|.-. ...| .++++|.+|+.|+|.+|.|++.
T Consensus 15 ~vFVYGTLk~G~~Nh~~l~~~r~~~A~~~G~~~tl~~YpL~~~g~-------~~~p--~~~i~p~~g~~V~Gevy~v~~~ 85 (161)
T 1vkb_A 15 HIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGE-------HNIP--WLLYLPGKGHCVTGEIYEVDEQ 85 (161)
T ss_dssp EEEECSTTSTTSTTTHHHHCGGGCCEEEEEEEEESSCBCEEEETT-------TTEE--EEESCTTSSBCCEEEEEEECHH
T ss_pred EEEEcCCCCCCCcChHHHhhCcCCCceEEEEEeecCCceEEEecC-------CCcc--eeEeecCCCCEEEEEEEEECHH
Confidence 5899999994432 111 0 12 233 466777777521 1122 3777777778999999999874
Q ss_pred cchHHHHHHHHHhhhc---CcccceeeEEeCC---CCCCCceEEEEEEEEec
Q 029633 71 EDKEVAVTYLEVREKQ---YDKKAYLDLFTDP---MATTPAVSGVMVYIASA 116 (190)
Q Consensus 71 ~~~~~~l~~Ld~RE~~---Y~~~~~v~v~~~~---~~~~~~~~~al~Yv~~~ 116 (190)
.|+.||.-|.. |.|. .++|.+.+ ...++..+.|++|+++.
T Consensus 86 -----~L~~LD~~Eg~p~~Y~R~-~v~V~~~~~~~~~~~g~~v~A~vYv~~~ 131 (161)
T 1vkb_A 86 -----MLRFLDDFEDCPSMYQRT-ALQVQVLEWEGDGDPGDSVQCFVYTTAT 131 (161)
T ss_dssp -----HHHHHHHHTTTTTSCEEE-EEEEEEEEEC----CCSEEEEEEEEESC
T ss_pred -----HHHHHHHhcCCCCceEEE-EEEEEecccccccCCCCEEEEEEEEcCC
Confidence 89999999974 8887 88887610 00012458999999974
No 9
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=97.94 E-value=4.6e-05 Score=64.69 Aligned_cols=90 Identities=19% Similarity=0.295 Sum_probs=60.3
Q ss_pred eEEEecccCCCCCCCC----c--eeeeeEEeceEEEEEeecccCCCCCCCCceeeEeeeCCCCeeEEEEEEecCCcchHH
Q 029633 2 WVFGYGSLIWKAGFHF----D--ERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (190)
Q Consensus 2 WvFgYGSLmw~~~~~~----~--~~~~a~l~Gy~R~F~~~s~~hRGt~e~PG~vltl~~~~~~~v~Gv~y~i~~~~~~~~ 75 (190)
.||-|||||-....+. . ...+++++| +-+.. | ..||++. .+..++.|.|-+|.|++
T Consensus 4 ~vFVYGTL~~g~~n~~~l~~~~~~~~~~~~~g--~L~~~------g--~~P~lv~--~~~~~~~V~Gev~~v~~------ 65 (285)
T 2qik_A 4 LLFVYGTLRKHEKNHHLLAQSACINEQARTKG--SLFAA------K--EGPTVVF--NDEDEGYIYGEVYEADE------ 65 (285)
T ss_dssp EEEECSTTSTTSTTGGGGTTCEEEEEEEEEES--EEEEC----------CEEEEC--CTTCCSEEEEEEEEECH------
T ss_pred EEEEECCCCCCCcChHHhCCCeEeeeeEEEEE--EEEEc------C--CCCeEEE--ccCCCCEEEEEEEEcCH------
Confidence 5899999997665432 1 134678876 44422 2 1476653 22247899999999974
Q ss_pred HHHHHHHhhh--c-CcccceeeEEeCCCCCCCceEEEEEEEEecC
Q 029633 76 AVTYLEVREK--Q-YDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (190)
Q Consensus 76 ~l~~Ld~RE~--~-Y~~~~~v~v~~~~~~~~~~~~~al~Yv~~~~ 117 (190)
. .||.-|. . |.|. .++|.+.+ + .+.|++|+.++.
T Consensus 66 ~--~LD~~E~~~~~Y~R~-~v~v~~~~---g--~~~a~vY~~~~~ 102 (285)
T 2qik_A 66 L--CIHKLDQFFQGYHKQ-TVFVETDV---G--IKIALIYFMNKD 102 (285)
T ss_dssp H--HHHHHHHHSTTCEEE-EEEEEETT---E--EEEEEEEECC--
T ss_pred H--HhHHhcCCCCceeEE-EEEEEcCC---C--EEEEEEEEeccc
Confidence 2 7999997 3 8887 88888753 2 379999998764
No 10
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=77.19 E-value=1.8 Score=33.76 Aligned_cols=30 Identities=17% Similarity=0.046 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCChHHHHHHH
Q 029633 144 SGPNRDYLFQLEKALLELECSGCEDKHVIDLAN 176 (190)
Q Consensus 144 sG~n~eYL~~l~~~l~~l~~~g~~D~~l~~L~~ 176 (190)
..|+.+||..+.+++++. |++++|++.|.+
T Consensus 133 ~~ps~~Yl~~i~~g~~~~---gl~~~y~~~L~~ 162 (188)
T 3cry_A 133 APPSPQYKKIICMGAKEN---GLPLEYQEKLKA 162 (188)
T ss_dssp CCCCHHHHHHHHHHHHHT---TCCHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHh---CcCHHHHHHHhc
Confidence 679999999999999999 999999999975
No 11
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.42 E-value=26 Score=21.88 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHHhhccCCCCChH--HHHH-------HHHHHHHhcchhhh
Q 029633 146 PNRDYLFQLEKALLELECSGCEDKH--VIDL-------ANTVRRILSEEDSA 188 (190)
Q Consensus 146 ~n~eYL~~l~~~l~~l~~~g~~D~~--l~~L-------~~~v~~~~~~~~~~ 188 (190)
|..+|=. -.+.|++| |..|.+ +.+| +++|..+....++.
T Consensus 5 p~~~~~~-~l~~L~~M---GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 5 SSGHFQV-QLEQLRSM---GFLNREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp CCCSSHH-HHHHHHHH---TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred hhhhHHH-HHHHHHHc---CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 3445533 34889999 998865 5666 45565555444443
No 12
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=28.03 E-value=86 Score=26.66 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 029633 128 ASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANTV 178 (190)
Q Consensus 128 ~~~~~~A~~I~~a~G~sG~n~eYL~~l~~~l~~l~~~g~~D~~l~~L~~~v 178 (190)
.+.++++++|.++--..+.+.+=|....+.|+++ |+.+..|..|..+.
T Consensus 90 ls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~l---Gl~~~~i~~ll~~~ 137 (335)
T 4fp9_B 90 LNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKL---GLGEGKLKRVLYCC 137 (335)
T ss_dssp CCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHT---TCTTTTHHHHHHHC
T ss_pred CCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHc---CCCHHHHHHHHHhC
Confidence 7899999999999999999999999999999999 99998888776553
No 13
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=25.23 E-value=69 Score=22.42 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=29.8
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHhcch
Q 029633 145 GPNRDYLFQLEKALLELECSGCEDKHVIDLANTVRRILSEE 185 (190)
Q Consensus 145 G~n~eYL~~l~~~l~~l~~~g~~D~~l~~L~~~v~~~~~~~ 185 (190)
..+.=|+..|.+.|++. + .+.+|.+|..+|.+.....
T Consensus 34 ~~GSwFIq~Lc~~l~~~---~-~~~dl~~ilt~Vn~~V~~~ 70 (105)
T 1pyo_B 34 KRGSWYIEALAQVFSER---A-CDMHVADMLVKVNALIKDR 70 (105)
T ss_dssp TTEEHHHHHHHHHHHHH---T-TTSCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHH---C-CCCCHHHHHHHHHHHHHhh
Confidence 35677999999999998 5 5678999999888776543
No 14
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=20.35 E-value=1.5e+02 Score=20.46 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=33.9
Q ss_pred CCCCCCCCCHHHHHHHHHhcc-CCCCCcHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 029633 121 NSNYLGPASLEDIAKQIIQAE-GPSGPNRDYLFQLEKALLELECSGCEDKHVIDLANT 177 (190)
Q Consensus 121 n~~~~g~~~~~~~A~~I~~a~-G~sG~n~eYL~~l~~~l~~l~~~g~~D~~l~~L~~~ 177 (190)
-|.|.|..+++++-..|..=. ..-||+.+=+..+++.|.++ . .+..|+.+...
T Consensus 2 ~P~~~g~t~l~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~l-v---~~~~lek~~~v 55 (97)
T 4fjo_A 2 APNLAGAVEFSDVKTLLKEWITTISDPMEEDILQVVRYCTDL-I---EEKDLEKLDLV 55 (97)
T ss_dssp CCCBTTBCSHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-H---HTTCHHHHHHH
T ss_pred CCcccCCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-h---hccCHHHHHHH
Confidence 588999999887665543210 02467777777778888888 3 44555555444
Done!