BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029634
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 59 ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAA 118
I F+ + RN P A GF+ Y +FI AA + FGT+ + ++E+AA
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFP--SFGTTGSTDVRKREIAA 59
Query: 119 FLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGAL 178
FLG +T+ G+ A GP AWG C+ KE +P+ YC + YPC PG SY+GRG +
Sbjct: 60 FLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPGKSYYGRGPI 117
Query: 179 PLYW 182
L W
Sbjct: 118 QLSW 121
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 67 QFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSK 126
QF + N HAVGF+ Y +FITAA + FG + M +KE+AAF G +
Sbjct: 10 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAAFFGQTSHE 67
Query: 127 TSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYW 182
T+ G+ A G WG CY +E+ + +CD + +PC PG Y+GRG + L W
Sbjct: 68 TTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSN-NLEWPCAPGKFYYGRGPMMLSW 122
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 59 ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAA 118
+S QF + N HAVGF+ Y +FITAA + FG + M +KE+AA
Sbjct: 5 LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAA 62
Query: 119 FLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGAL 178
F G +T+ G+ A G WG CY +E+ + +CD + +PC PG Y+GRG +
Sbjct: 63 FFGQTSHETTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSN-NLEWPCAPGKFYYGRGPM 121
Query: 179 PLYW 182
L W
Sbjct: 122 MLSW 125
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 59 ISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAA 118
+S QF + N HAVGF+ Y +FITAA + FG + M +KE+AA
Sbjct: 4 LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAA 61
Query: 119 FLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGAL 178
F G +T+ G+ A G WG CY + + + +CD + +PC PG Y+GRG +
Sbjct: 62 FFGQTSHETTGGWSGAPDGANTWGYCYKEAIDKSDPHCDSN-NLEWPCAPGKFYYGRGPM 120
Query: 179 PLYW 182
L W
Sbjct: 121 MLSW 124
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 68 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKT 127
F+ L RN P GF+ Y++F+TAA + GFGT+ ++EVAAFL +T
Sbjct: 11 FDQLLKHRNDPACEGKGFYSYNAFVTAARSFG--GFGTTGDTNTRKREVAAFLAQTSHET 68
Query: 128 SCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPL 180
+ G + GP AWG C+ E + YCD PC G SY+GRG + L
Sbjct: 69 TGGAAGSPDGPYAWGYCFVTERDKSNKYCDP----GTPCPAGKSYYGRGPIQL 117
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 68 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKT 127
F+ L RN GF+ Y++FITAA + FGT+ ++EVAAFL +T
Sbjct: 12 FDQLLKHRNDQACEGKGFYSYNAFITAARSFA--AFGTTGDSNTRKREVAAFLAQTSHET 69
Query: 128 SCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPL 180
+ G + GP AWG C+ E + YCD + PC+ G SY+GRG + L
Sbjct: 70 TGGAATSPDGPYAWGYCFVTERDKSNRYCDG----SGPCSAGKSYYGRGPIQL 118
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 58 TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVA 117
++S QF+ + RN A GF+ Y +F+ AA + GFG + +++VA
Sbjct: 2 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFP--GFGATGSTDARKRDVA 59
Query: 118 AFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGA 177
AFL +T+ G+ A G AWG C+ +E YC + +PC PG Y+GRG
Sbjct: 60 AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQ--WPCAPGKRYYGRGP 117
Query: 178 LPL 180
+ L
Sbjct: 118 IQL 120
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 58 TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVA 117
++S QF+ + RN A GF+ Y +F+ AAA + GFGT+ + ++EVA
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFS--GFGTTGSADVQKREVA 58
Query: 118 AFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGA 177
AFL +T+ G+ A G AWG C+ +E + YC + +PC PG Y+GRG
Sbjct: 59 AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGP 116
Query: 178 LPL 180
+ L
Sbjct: 117 IQL 119
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 58 TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVA 117
++S QF+ + RN A GF+ Y +F+ AAA + GFGT+ ++EVA
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVA 58
Query: 118 AFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGA 177
AFL +T+ G+ A G AWG C+ +E + YC + +PC PG Y+GRG
Sbjct: 59 AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGP 116
Query: 178 LPL 180
+ L
Sbjct: 117 IQL 119
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 68 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKT 127
FE L RN A GF+ Y +F+ AAA + G GT + ++EVAAFLG +T
Sbjct: 67 FERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFG-GTGNTETR-KREVAAFLGQTSHET 124
Query: 128 SCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPL 180
+ G+ A GP +WG C+ +E +P YC + +PC PG Y+GRG + L
Sbjct: 125 TGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPE--WPCAPGRKYYGRGPIQL 175
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 65 TYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVG 124
+ F N A GF+ Y++FI AA Y GFGT+ + ++E+AAF +V
Sbjct: 7 SQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYS--GFGTTGSNDVKKRELAAFFANVM 64
Query: 125 SKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYW 182
+T GLCY E +P YC T+PCT G SYHGRG L L W
Sbjct: 65 HETG-------------GLCYINEKNPPINYCQSS--STWPCTSGKSYHGRGPLQLSW 107
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 21/116 (18%)
Query: 67 QFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSK 126
QF+ +F RN+ F+ Y A + Y GF + + ++E AAFL +VG +
Sbjct: 7 QFDQMFPSRNS-------FYTYSGLTAALSAYP--GFSNTGSDTVKKQEAAAFLANVGHE 57
Query: 127 TSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYW 182
T G L + + N P+ YCD Y P Y+GRG + L W
Sbjct: 58 T---------GGLVYVVEQNTANYPH--YCDASQPYGCPAG-NDKYYGRGPVQLSW 101
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 120 LGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDD 159
+GH+GS + + +A+ + YN E P Y D D
Sbjct: 156 VGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFD 195
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 16 SVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGW 50
+ +I E + P + KGK GW+C+GW
Sbjct: 375 DITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGW 409
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 26.9 bits (58), Expect = 7.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 97 LYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYG 132
L QPH +G A +G+KE+A G V S G G
Sbjct: 415 LLQPHIYGVLAIDTIGRKELAGSGGIVDQSLSLGGG 450
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,420,241
Number of Sequences: 62578
Number of extensions: 270802
Number of successful extensions: 604
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 20
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)