Query 029634
Match_columns 190
No_of_seqs 164 out of 585
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 16:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4742 Predicted chitinase [G 100.0 4.2E-56 9.1E-61 390.4 12.5 172 14-189 19-191 (286)
2 PF00182 Glyco_hydro_19: Chiti 100.0 3E-47 6.5E-52 326.9 5.8 124 62-189 1-124 (232)
3 cd00325 chitinase_glyco_hydro_ 100.0 4.5E-46 9.7E-51 319.6 7.8 122 63-189 1-122 (230)
4 cd00442 lysozyme_like lysozyme 98.9 4.2E-10 9.1E-15 84.7 2.6 48 117-189 1-48 (105)
5 COG3179 Predicted chitinase [G 98.2 3.9E-07 8.5E-12 77.5 1.7 51 62-128 3-54 (206)
6 PF00187 Chitin_bind_1: Chitin 96.0 0.0012 2.5E-08 43.3 -1.0 26 31-56 3-34 (40)
7 smart00270 ChtBD1 Chitin bindi 94.8 0.011 2.4E-07 38.4 0.7 24 32-55 2-31 (38)
8 cd00035 ChtBD1 Chitin binding 90.5 0.15 3.3E-06 33.1 1.4 25 32-56 2-32 (40)
9 PF07172 GRP: Glycine rich pro 87.8 0.52 1.1E-05 35.9 2.8 11 1-11 1-11 (95)
10 PF02950 Conotoxin: Conotoxin; 73.3 2.2 4.7E-05 29.9 1.5 12 38-49 54-67 (75)
11 PF15182 OTOS: Otospiralin 59.1 8.4 0.00018 28.0 2.2 36 83-130 25-61 (69)
12 PF09447 Cnl2_NKP2: Cnl2/NKP2 54.3 11 0.00024 27.2 2.2 23 55-77 12-34 (67)
13 PF12273 RCR: Chitin synthesis 48.1 11 0.00024 29.4 1.5 9 4-12 1-9 (130)
14 PRK14877 conjugal transfer mat 43.2 14 0.00031 38.3 1.7 60 20-81 872-947 (1062)
15 COG3979 Uncharacterized protei 39.3 12 0.00026 31.3 0.5 110 58-187 56-181 (181)
16 PF15240 Pro-rich: Proline-ric 35.1 24 0.00053 30.0 1.7 14 13-26 6-19 (179)
17 PF02088 Ornatin: Ornatin; In 32.3 20 0.00044 23.5 0.6 29 146-177 7-35 (41)
18 PF13833 EF-hand_8: EF-hand do 31.1 79 0.0017 20.0 3.3 31 63-96 22-52 (54)
19 cd08327 CARD_RAIDD Caspase act 30.7 36 0.00078 25.8 1.8 39 61-99 34-80 (94)
20 PF06607 Prokineticin: Prokine 28.5 21 0.00046 27.5 0.3 12 39-50 30-41 (97)
21 PF00432 Prenyltrans: Prenyltr 28.4 77 0.0017 19.9 2.9 26 112-138 2-27 (44)
22 PHA02642 C-type lectin-like pr 26.1 1.2E+02 0.0027 26.4 4.5 36 39-74 86-138 (216)
23 PHA02867 C-type lectin protein 23.3 87 0.0019 26.2 3.0 36 38-73 46-98 (167)
24 PF08261 Carcinustatin: Carcin 22.7 37 0.0008 15.3 0.4 7 137-143 2-8 (8)
25 PF10057 DUF2294: Uncharacteri 22.4 23 0.00049 27.4 -0.6 12 170-181 21-32 (118)
26 PF08189 Meleagrin: Meleagrin/ 22.3 32 0.00069 22.5 0.2 11 39-49 4-18 (39)
No 1
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=4.2e-56 Score=390.41 Aligned_cols=172 Identities=34% Similarity=0.611 Sum_probs=158.2
Q ss_pred HHHHHHHHhCCCCCcccceeeecCCcCCCCCccccCCCCcccCCCcccccCHHHHHHHHhcCCCCCCcCCCceeHHHHHH
Q 029634 14 ILSVLVIVHGDESSVKPLVKIVKGKKLCDKGWECKGWSEYCCNQTISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFIT 93 (190)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~~~C~~g~ccs~~~~yc~~~~v~~iit~~~F~~lfp~rn~~~c~a~gFYTY~~Fi~ 93 (190)
++.++.++..++.+ ...++...+|..|..| +|+.+.++|..++|+++||+++||+||+++|+.+||++|||||++||.
T Consensus 19 ~~~~~~~~~~q~~~-~~~~~~~~~~~~c~~g-~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~ 96 (286)
T KOG4742|consen 19 LLQSSSTVASQNCG-ASNTTPPYCKFGCGPG-PCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFII 96 (286)
T ss_pred HHHHHHhhhcccCC-CCccccccccCCCCCC-CCCCCCCCCCcccccccccHHHHHHHhccccCCCCCCCCCccccHHHH
Confidence 33344556665554 3447889999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCcccCcCcchhhhHHHHhhhhhcccCCCCCCcCCCCCcccceeeeeecCC-CCCCcCCCCCCCCCCCCCCcc
Q 029634 94 AAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSP-NQIYCDDDFKYTYPCTPGVSY 172 (190)
Q Consensus 94 Aa~~fp~~~Fg~tG~~~~~krElAAFlAhvshET~gg~~~a~~gp~~wGlcy~~E~~~-~~~YC~~~~~~~yPCapGk~Y 172 (190)
|++.|| +|++||++.+.||||||||||++|||+|||..+++|||+|+|||++|+++ ...||+.+++..|||++||.|
T Consensus 97 Aa~sfp--~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y 174 (286)
T KOG4742|consen 97 AARSFP--EFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEISPSSGRYCDASNQITYPCSPGKSY 174 (286)
T ss_pred HHHhcc--cccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccccChhhhccCCcccceEeecCCCCcc
Confidence 999999 99999999999999999999999999999999999999999999999998 789999987544999999999
Q ss_pred ccCCCCCCcCcCCCcCC
Q 029634 173 HGRGALPLYWCVYRSPS 189 (190)
Q Consensus 173 yGRGpIQLSwNyNYg~a 189 (190)
|||||||||||||||+|
T Consensus 175 ~GRG~iQlsWNyNYG~a 191 (286)
T KOG4742|consen 175 YGRGPIQLSWNYNYGAA 191 (286)
T ss_pred cccCcccccccccccHh
Confidence 99999999999999986
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=3e-47 Score=326.89 Aligned_cols=124 Identities=33% Similarity=0.660 Sum_probs=108.5
Q ss_pred ccCHHHHHHHHhcCCCCCCcCCCceeHHHHHHHHhhhCCCCcccCcCcchhhhHHHHhhhhhcccCCCCCCcCCCCCccc
Q 029634 62 YFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAW 141 (190)
Q Consensus 62 iit~~~F~~lfp~rn~~~c~a~gFYTY~~Fi~Aa~~fp~~~Fg~tG~~~~~krElAAFlAhvshET~gg~~~a~~gp~~w 141 (190)
|||+++||+||||||++.||+++||||++||+|+++|| +|++||+++++||||||||||++|||+++|...+.++++|
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp--~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~ 78 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFP--AFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAW 78 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTST--TTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGG
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCc--hhccCccHHHHHHHHHhhhcccchhccccccccccccccc
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ceeeeeecCCCCCCcCCCCCCCCCCCCCCccccCCCCCCcCcCCCcCC
Q 029634 142 GLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPS 189 (190)
Q Consensus 142 Glcy~~E~~~~~~YC~~~~~~~yPCapGk~YyGRGpIQLSwNyNYg~a 189 (190)
|||+.+|..+...||+.+. +|||.+|++|||||||||||||||+++
T Consensus 79 gyc~~~e~~~~~~y~~~~~--~~p~~~g~~Y~GRG~iQLT~~~NY~~~ 124 (232)
T PF00182_consen 79 GYCYKREKGANSDYCNRNG--NYPCGDGKKYYGRGPIQLTWNYNYGAF 124 (232)
T ss_dssp TTS-SB-SS-SSGG--TTS--SS--TTTTGGS-BTTTTB-SHHHHHHH
T ss_pred ccccccccCCccccccCcc--CccCCCCCeEecccccccchhhhHHHH
Confidence 9999999998899999863 699999999999999999999999864
No 3
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=4.5e-46 Score=319.56 Aligned_cols=122 Identities=39% Similarity=0.798 Sum_probs=117.0
Q ss_pred cCHHHHHHHHhcCCCCCCcCCCceeHHHHHHHHhhhCCCCcccCcCcchhhhHHHHhhhhhcccCCCCCCcCCCCCcccc
Q 029634 63 FQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWG 142 (190)
Q Consensus 63 it~~~F~~lfp~rn~~~c~a~gFYTY~~Fi~Aa~~fp~~~Fg~tG~~~~~krElAAFlAhvshET~gg~~~a~~gp~~wG 142 (190)
||+++||+||||||+..||+++||||++||+|+++|| +|+++|+++++||||||||||++|||+|+|..++.++++||
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp--~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g 78 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFP--GFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWG 78 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhcc--ccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCC
Confidence 6899999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred eeeeeecCCCCCCcCCCCCCCCCCCCCCccccCCCCCCcCcCCCcCC
Q 029634 143 LCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPS 189 (190)
Q Consensus 143 lcy~~E~~~~~~YC~~~~~~~yPCapGk~YyGRGpIQLSwNyNYg~a 189 (190)
||+++|+++...+|.. .+|||.+|++|||||||||||||||+++
T Consensus 79 ~c~~~e~~~~~~~~~~---~~~pc~dG~~Y~GRG~iQLT~~~NY~~~ 122 (230)
T cd00325 79 YCDKSETGPPSSYCDP---AQWPCAPGKKYYGRGPIQLSWNYNYGPA 122 (230)
T ss_pred ccccccCCCccccccc---CCCCCCcccccccCCceeeeehhhHHHH
Confidence 9999999988889987 2699999999999999999999999875
No 4
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=98.94 E-value=4.2e-10 Score=84.68 Aligned_cols=48 Identities=17% Similarity=-0.070 Sum_probs=37.8
Q ss_pred HHhhhhhcccCCCCCCcCCCCCcccceeeeeecCCCCCCcCCCCCCCCCCCCCCccccCCCCCCcCcCCCcCC
Q 029634 117 AAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWCVYRSPS 189 (190)
Q Consensus 117 AAFlAhvshET~gg~~~a~~gp~~wGlcy~~E~~~~~~YC~~~~~~~yPCapGk~YyGRGpIQLSwNyNYg~a 189 (190)
|+|+++.+|||.+++. .++ ..|| ||.+++.|||||+||++|||||+.+
T Consensus 1 a~~~~i~~~E~~~~~~-------------~~~----~Gy~--------~~~~~~~~~~~G~~q~~~~~~~~~~ 48 (105)
T cd00442 1 AIIDMLASSEGTDLKA-------------YKD----RGHG--------TLNPGERGYGIGLYQLTSRWSDAYR 48 (105)
T ss_pred ChhhhhhhcccCCCcc-------------ccc----CCCC--------CCCCCCcccccCceeeeeccCcccc
Confidence 6899999999995432 222 1244 7888999999999999999999843
No 5
>COG3179 Predicted chitinase [General function prediction only]
Probab=98.24 E-value=3.9e-07 Score=77.51 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=36.6
Q ss_pred ccCHHHHHHHHhcCCCCCCcCCCceeHHHHHHHHhh-hCCCCcccCcCcchhhhHHHHhhhhhcccCC
Q 029634 62 YFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAAL-YQPHGFGTSAGKLMGQKEVAAFLGHVGSKTS 128 (190)
Q Consensus 62 iit~~~F~~lfp~rn~~~c~a~gFYTY~~Fi~Aa~~-fp~~~Fg~tG~~~~~krElAAFlAhvshET~ 128 (190)
.||+.+|..|||+.-. +| ..++.|+.. .. .|+. +.+..+|+||||+.|||+
T Consensus 3 ~i~e~~~~ki~p~a~k------~~---~~v~~al~~~l~--~~gi-----~~p~r~AmFlAQ~~HESg 54 (206)
T COG3179 3 TITEVDLRKIFPKARK------EF---VDVIVALQPALD--EAGI-----TTPLRQAMFLAQVMHESG 54 (206)
T ss_pred chhHHHHHHhcchhhh------hh---HHHHHHHHHHHH--HhcC-----CCHHHHHHHHHHHhhhcC
Confidence 5899999999998642 22 244444433 22 6664 347789999999999999
No 6
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e.g. solanaceous lectins of tomato and potato, plant endochitinases, the wound-induced proteins: hevein, win1 and win2, and the Kluyveromyces lactis killer toxin alpha subunit) contain this domain []. The domain may occur in one or more copies and is thought to be involved in recognition or binding of chitin subunits [, ]. In chitinases, as well as in the potato wound-induced proteins, the 43-residue domain directly follows the signal sequence and is therefore at the N terminus of the mature protein; in the killer toxin alpha subunit it is located in the central section of the protein. ; GO: 0008061 chitin binding; PDB: 9WGA_B 2WGC_B 1ULK_B 2UVO_B 1WGC_B 2CWG_A 2X3T_C 4AML_B 7WGA_B 1ZWU_A ....
Probab=95.96 E-value=0.0012 Score=43.34 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=20.6
Q ss_pred ceeeecCCcCCCCCccccCC------CCcccC
Q 029634 31 LVKIVKGKKLCDKGWECKGW------SEYCCN 56 (190)
Q Consensus 31 ~~~~~~g~~~C~~g~ccs~~------~~yc~~ 56 (190)
.++.+++++.||+++|||+| ++||+.
T Consensus 3 ~CG~~~~~~~Cp~~~CCS~~G~CG~t~~yCg~ 34 (40)
T PF00187_consen 3 RCGRQAGGATCPNGLCCSQYGYCGTTSDYCGA 34 (40)
T ss_dssp BSSGGGTTBBSGGG-EEETTSBEESSHHHHST
T ss_pred ccccCcCCCcCCCCCccCCCCcccCChhhhhc
Confidence 46678899999999999997 677754
No 7
>smart00270 ChtBD1 Chitin binding domain.
Probab=94.78 E-value=0.011 Score=38.37 Aligned_cols=24 Identities=29% Similarity=0.689 Sum_probs=20.2
Q ss_pred eeeecCCcCCCCCccccCC------CCccc
Q 029634 32 VKIVKGKKLCDKGWECKGW------SEYCC 55 (190)
Q Consensus 32 ~~~~~g~~~C~~g~ccs~~------~~yc~ 55 (190)
+..++|++.|+.++|||+| .+||+
T Consensus 2 CG~~~g~~~C~~~~CCS~~G~CG~t~~yCg 31 (38)
T smart00270 2 CGSQAGGKVCPNNLCCSQFGYCGSGDEYCG 31 (38)
T ss_pred CcCCCCCCcCCCCCccCCCcCccCCHHHHh
Confidence 4668899999999999996 67775
No 8
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K.lactis killer toxin alpha subunit, occurs singly or multiply
Probab=90.51 E-value=0.15 Score=33.09 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=20.7
Q ss_pred eeeecCCcCCCCCccccCC------CCcccC
Q 029634 32 VKIVKGKKLCDKGWECKGW------SEYCCN 56 (190)
Q Consensus 32 ~~~~~g~~~C~~g~ccs~~------~~yc~~ 56 (190)
++.++|++.|+.+.|||+| .+||+.
T Consensus 2 Cg~~~~~~~C~~~~CCS~~G~CG~t~~~Cg~ 32 (40)
T cd00035 2 CGRQAGGGGCPPGLCCSQFGYCGTTDDYCGR 32 (40)
T ss_pred CCccCCCCcCCCCccccccccccCCcccccc
Confidence 4667899999999999996 777764
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=87.75 E-value=0.52 Score=35.93 Aligned_cols=11 Identities=36% Similarity=0.069 Sum_probs=7.0
Q ss_pred CchhHHHHHHH
Q 029634 1 MKLKWQLVLFA 11 (190)
Q Consensus 1 ~~~~~~~~~~~ 11 (190)
|.+|.+|||.+
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 88787555543
No 10
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=73.35 E-value=2.2 Score=29.89 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=6.0
Q ss_pred CcCC--CCCccccC
Q 029634 38 KKLC--DKGWECKG 49 (190)
Q Consensus 38 ~~~C--~~g~ccs~ 49 (190)
+..| .+..|||.
T Consensus 54 g~~C~~~~~~CC~~ 67 (75)
T PF02950_consen 54 GSYCCKRNSECCSG 67 (75)
T ss_dssp TSB-BTTTTCBSSS
T ss_pred CCcCCCCCCCCCCC
Confidence 4566 33466665
No 11
>PF15182 OTOS: Otospiralin
Probab=59.08 E-value=8.4 Score=28.03 Aligned_cols=36 Identities=22% Similarity=0.595 Sum_probs=27.6
Q ss_pred CCceeHHHHHHHHhhhCCCCcccCcCcchhhhHHH-HhhhhhcccCCCC
Q 029634 83 VGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVA-AFLGHVGSKTSCG 130 (190)
Q Consensus 83 ~gFYTY~~Fi~Aa~~fp~~~Fg~tG~~~~~krElA-AFlAhvshET~gg 130 (190)
.+||+|-.+.+.+.+|+ +-.|+| +||||.---++=|
T Consensus 25 sDFW~YveyFrtlGAY~------------~indmARtfFAh~plG~tLG 61 (69)
T PF15182_consen 25 SDFWNYVEYFRTLGAYN------------QINDMARTFFAHFPLGDTLG 61 (69)
T ss_pred hHHHHHHHHHHHhccHH------------HHHHHHHHHHhhCccccccc
Confidence 47899999999999888 667777 6999986655533
No 12
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=54.28 E-value=11 Score=27.19 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred cCCCcccccCHHHHHHHHhcCCC
Q 029634 55 CNQTISDYFQTYQFENLFAKRNT 77 (190)
Q Consensus 55 ~~~~v~~iit~~~F~~lfp~rn~ 77 (190)
.++.+.+|||-++|.++||++..
T Consensus 12 s~s~L~~iisl~qF~~LFPr~~~ 34 (67)
T PF09447_consen 12 SPSSLPDIISLEQFRKLFPRRLR 34 (67)
T ss_pred CcCccccccCHHHHHHHccccCC
Confidence 35789999999999999999764
No 13
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=48.11 E-value=11 Score=29.43 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=4.1
Q ss_pred hHHHHHHHH
Q 029634 4 KWQLVLFAT 12 (190)
Q Consensus 4 ~~~~~~~~~ 12 (190)
||+|+++++
T Consensus 1 RW~l~~iii 9 (130)
T PF12273_consen 1 RWVLFAIII 9 (130)
T ss_pred CeeeHHHHH
Confidence 355544443
No 14
>PRK14877 conjugal transfer mating pair stabilization protein TraN; Provisional
Probab=43.17 E-value=14 Score=38.27 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=38.4
Q ss_pred HHhCCCCCcccceeeecCCcCCCC-C-ccccCC-------------CCccc-CCCcccccCHHHHHHHHhcCCCCCCc
Q 029634 20 IVHGDESSVKPLVKIVKGKKLCDK-G-WECKGW-------------SEYCC-NQTISDYFQTYQFENLFAKRNTPVAH 81 (190)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~~~C~~-g-~ccs~~-------------~~yc~-~~~v~~iit~~~F~~lfp~rn~~~c~ 81 (190)
+...++.+.+. ....+..+|.. | +|||+. ..||| ++.+++||.|+-=.||=.....|.|-
T Consensus 872 l~aC~eeE~kL--A~Kr~~~lChyVGTy~CsKkl~lGf~GvCveKk~sYCCFNSkLARIIqEQGR~QLG~~pk~P~C~ 947 (1062)
T PRK14877 872 LVACDQKEMEA--SIHKNQKSCFTLDTERCVKYLNVGFTKKCVKKATDMCCYNSMLSRVIMQQAYPQLGIDPVASNCV 947 (1062)
T ss_pred HhcCCHHHHHH--HHHhccCceEEecceeeeeeecccccceeeeecceeeecCCHHHHHHHHhhHHhcCCCCCCCCCC
Confidence 33445544333 33445567776 4 688862 78999 88999999998888874332345564
No 15
>COG3979 Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]
Probab=39.25 E-value=12 Score=31.35 Aligned_cols=110 Identities=11% Similarity=-0.077 Sum_probs=67.2
Q ss_pred CcccccCHHHHHHHHhcCCCCCCcCCCceeHHHHHHHHhhhCCCCcccCcC--cchhhhHHHHhhhhhcccCCCCCCcCC
Q 029634 58 TISDYFQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAG--KLMGQKEVAAFLGHVGSKTSCGYGVAT 135 (190)
Q Consensus 58 ~v~~iit~~~F~~lfp~rn~~~c~a~gFYTY~~Fi~Aa~~fp~~~Fg~tG~--~~~~krElAAFlAhvshET~gg~~~a~ 135 (190)
+++.+..+..|..+...+.. =+.|..+..+.-.++ ..+.-|. ....+++++--.+++..++++.+.
T Consensus 56 ~~~g~~~et~y~~~~~a~~t-------~g~~s~~~~~~~~~~--~~~~~~~~s~p~~~~~~~~~~gd~vt~~g~~~~--- 123 (181)
T COG3979 56 TVEGLAPETEYWTLVEAPDT-------SGNWSAWSRLLTVST--SGCGDGSPSAPAWVKNGVYVVGDVVTYTGGASL--- 123 (181)
T ss_pred EecCcceeeEEEEeeeccCC-------CCccccceeeeeecc--CcCCCCCcCccchhhcCcccccceEEecCcccc---
Confidence 45666666666665554432 257777777777777 6654443 346788899999999999985542
Q ss_pred CCCcccceeeeeecCC-------CCCCcCCCC--CCCCCCC-----CCCccccCCCCCCcCcCCCc
Q 029634 136 GGPLAWGLCYNKEMSP-------NQIYCDDDF--KYTYPCT-----PGVSYHGRGALPLYWCVYRS 187 (190)
Q Consensus 136 ~gp~~wGlcy~~E~~~-------~~~YC~~~~--~~~yPCa-----pGk~YyGRGpIQLSwNyNYg 187 (190)
+..++... ...-|.... ...++|. ..+.|++||+-|+|+++||+
T Consensus 124 --------~~~~~~~Wt~g~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (181)
T COG3979 124 --------KLYEAKWWTAGQEPGANGAWGPWVWGAATWYTVKDTVGGVQGYFNTGAAQASVLVGYG 181 (181)
T ss_pred --------ccceeeccccCcCCccccceeeeeecccccceEEEEeccccCCcCCcceEEEEecccC
Confidence 22222210 011111100 1134554 35899999999999999985
No 16
>PF15240 Pro-rich: Proline-rich
Probab=35.09 E-value=24 Score=30.04 Aligned_cols=14 Identities=7% Similarity=0.252 Sum_probs=6.8
Q ss_pred HHHHHHHHHhCCCC
Q 029634 13 AILSVLVIVHGDES 26 (190)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (190)
|.+||++|.++++.
T Consensus 6 LSvALLALSSAQ~~ 19 (179)
T PF15240_consen 6 LSVALLALSSAQST 19 (179)
T ss_pred HHHHHHHhhhcccc
Confidence 34444555555443
No 17
>PF02088 Ornatin: Ornatin; InterPro: IPR002463 Ornatin is a potent glycoprotein IIb-IIIa (GP IIb-IIIa) antagonist and platelet aggregation inhibitor []. The protein is 41-52 residues in length and contains the RGD recognition motif common in adhesion proteins, and 6 conserved cysteine residues. The sequences of ornatin isoforms B, C, D and E are highly similar, while isoforms A2 and A3 are less similar, lacking the N-terminal 9 residues. Ornatins share ~40% identity with decorsin, a GP IIb-IIIa antagonist isolated from the leech (Macrobdella decora) [].; GO: 0007155 cell adhesion, 0030193 regulation of blood coagulation, 0005576 extracellular region
Probab=32.29 E-value=20 Score=23.50 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=22.3
Q ss_pred eeecCCCCCCcCCCCCCCCCCCCCCccccCCC
Q 029634 146 NKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGA 177 (190)
Q Consensus 146 ~~E~~~~~~YC~~~~~~~yPCapGk~YyGRGp 177 (190)
++|.+..++.|.-+ .-||.-|+.=++||-
T Consensus 7 ~ke~gqp~~kcrc~---gkpctvgkc~~argd 35 (41)
T PF02088_consen 7 FKESGQPNDKCRCN---GKPCTVGKCNIARGD 35 (41)
T ss_pred hHhcCCCCcccccC---CeeeceeeeeecccC
Confidence 45666667888765 369999999999983
No 18
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=31.06 E-value=79 Score=20.05 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=22.3
Q ss_pred cCHHHHHHHHhcCCCCCCcCCCceeHHHHHHHHh
Q 029634 63 FQTYQFENLFAKRNTPVAHAVGFWDYHSFITAAA 96 (190)
Q Consensus 63 it~~~F~~lfp~rn~~~c~a~gFYTY~~Fi~Aa~ 96 (190)
+++++++.||..-+.. ..|.-+|+.|++...
T Consensus 22 ~s~~e~~~l~~~~D~~---~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTD---GDGYISFDEFISMMQ 52 (54)
T ss_dssp SCHHHHHHHHHHHTTS---SSSSEEHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccC---CCCCCCHHHHHHHHH
Confidence 7788888888765432 457788888887764
No 19
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=30.65 E-value=36 Score=25.79 Aligned_cols=39 Identities=10% Similarity=0.219 Sum_probs=29.3
Q ss_pred cccCHHHHHHHHhcCCCCC--------CcCCCceeHHHHHHHHhhhC
Q 029634 61 DYFQTYQFENLFAKRNTPV--------AHAVGFWDYHSFITAAALYQ 99 (190)
Q Consensus 61 ~iit~~~F~~lfp~rn~~~--------c~a~gFYTY~~Fi~Aa~~fp 99 (190)
.|||+++.+.|-......- =|.+|..-|..|++|...||
T Consensus 34 gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~ 80 (94)
T cd08327 34 GILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFP 80 (94)
T ss_pred CCCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 3888888888776544221 25677889999999999988
No 20
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=28.46 E-value=21 Score=27.45 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=8.4
Q ss_pred cCCCCCccccCC
Q 029634 39 KLCDKGWECKGW 50 (190)
Q Consensus 39 ~~C~~g~ccs~~ 50 (190)
.-|..|+||..|
T Consensus 30 ~dCg~G~CCA~~ 41 (97)
T PF06607_consen 30 ADCGPGTCCAVS 41 (97)
T ss_dssp GGT-TTEEECE-
T ss_pred CCCCCCceeCcc
Confidence 558889999986
No 21
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=28.43 E-value=77 Score=19.94 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=20.8
Q ss_pred hhhHHHHhhhhhcccCCCCCCcCCCCC
Q 029634 112 GQKEVAAFLGHVGSKTSCGYGVATGGP 138 (190)
Q Consensus 112 ~krElAAFlAhvshET~gg~~~a~~gp 138 (190)
+++++..|+.+.-+ ..|||...|+.+
T Consensus 2 d~~~~~~~l~~~Q~-~dGGf~~~~~~~ 27 (44)
T PF00432_consen 2 DVEKLIRFLLSCQN-PDGGFGGRPGGE 27 (44)
T ss_dssp HHHHHHHHHHHTBB-TTSSBBSSTTSS
T ss_pred CHHHHHHHHHHHCC-CCCCCCCCCCCC
Confidence 57899999999888 666888877653
No 22
>PHA02642 C-type lectin-like protein; Provisional
Probab=26.09 E-value=1.2e+02 Score=26.38 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=25.4
Q ss_pred cCCCCCccccC------------C---CCccc--CCCcccccCHHHHHHHHhc
Q 029634 39 KLCDKGWECKG------------W---SEYCC--NQTISDYFQTYQFENLFAK 74 (190)
Q Consensus 39 ~~C~~g~ccs~------------~---~~yc~--~~~v~~iit~~~F~~lfp~ 74 (190)
..||.||-+-+ | ..+|. ++++..|-++++.+-|...
T Consensus 86 ~~CP~gW~~~~~kCYyfs~~~ksW~eA~~~C~s~ga~La~I~seeE~~FL~~~ 138 (216)
T PHA02642 86 VTCPKGWIGFGYKCFYFSEDSKNWTFGNTFCTSLGATLVKVETEEELNFLKRY 138 (216)
T ss_pred CCCCCcCEEECCEEEEEeCcccCHHHHHHHHhhCCCeEeeECCHHHHHHHHHh
Confidence 68999987432 2 45664 4778889998888777644
No 23
>PHA02867 C-type lectin protein; Provisional
Probab=23.29 E-value=87 Score=26.17 Aligned_cols=36 Identities=14% Similarity=0.445 Sum_probs=20.7
Q ss_pred CcCCCCCccccC------------C---CCccc--CCCcccccCHHHHHHHHh
Q 029634 38 KKLCDKGWECKG------------W---SEYCC--NQTISDYFQTYQFENLFA 73 (190)
Q Consensus 38 ~~~C~~g~ccs~------------~---~~yc~--~~~v~~iit~~~F~~lfp 73 (190)
.+.||+||---+ | ..+|. ++++..|=++++.+-|..
T Consensus 46 ~~~CP~gWi~~~~~CY~fs~~~~tW~~A~~~C~~~ga~La~I~s~eE~~Fl~~ 98 (167)
T PHA02867 46 SKVCPDEWIGYNSKCYYFTINETNWNDSKKLCDVMDSSLIRFDNIETLNFVSR 98 (167)
T ss_pred CCCCCCCCEEECCEEEEEeccccCHHHHHHHHhhCCCEECCcCCHHHHHHHHH
Confidence 467999985221 1 23342 356666767776665543
No 24
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=22.73 E-value=37 Score=15.27 Aligned_cols=7 Identities=57% Similarity=1.402 Sum_probs=4.3
Q ss_pred CCcccce
Q 029634 137 GPLAWGL 143 (190)
Q Consensus 137 gp~~wGl 143 (190)
|||+.||
T Consensus 2 gpy~fgl 8 (8)
T PF08261_consen 2 GPYSFGL 8 (8)
T ss_pred CcccccC
Confidence 5676664
No 25
>PF10057 DUF2294: Uncharacterized conserved protein (DUF2294); InterPro: IPR018745 This domain of unknown function is found in a family of hypothetical bacterial proteins with no known function. It is also found at the C terminus of proteins provisionally annotated as response regulators.
Probab=22.36 E-value=23 Score=27.39 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=10.0
Q ss_pred CccccCCCCCCc
Q 029634 170 VSYHGRGALPLY 181 (190)
Q Consensus 170 k~YyGRGpIQLS 181 (190)
|.|+||||-+++
T Consensus 21 ke~~GkGP~~i~ 32 (118)
T PF10057_consen 21 KEYFGKGPKSIK 32 (118)
T ss_pred HHHhCCCCcEEE
Confidence 679999998764
No 26
>PF08189 Meleagrin: Meleagrin/Cygnin family; InterPro: IPR012573 This family consists of meleagrin and cygnin basic peptides that are isolated from turkey and black swan respectively. Both peptides are low in molecular weight and contain three disulphide bonds with high concentrations of aromatic residues. These peptides show similarity to transferrins and probably play some vital role in avian eggs but the exact function is still unknown [].
Probab=22.34 E-value=32 Score=22.49 Aligned_cols=11 Identities=45% Similarity=1.072 Sum_probs=7.7
Q ss_pred cCCCC-Ccc---ccC
Q 029634 39 KLCDK-GWE---CKG 49 (190)
Q Consensus 39 ~~C~~-g~c---cs~ 49 (190)
++||+ |+| ||+
T Consensus 4 kycpkiGYCS~~CsK 18 (39)
T PF08189_consen 4 KYCPKIGYCSSKCSK 18 (39)
T ss_pred hhCcccceecccccc
Confidence 57888 666 665
Done!