RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029635
(190 letters)
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB:
1rym_A 1ryn_A
Length = 205
Score = 207 bits (528), Expect = 1e-68
Identities = 64/115 (55%), Positives = 88/115 (76%)
Query: 75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
PWLI GLGNPG +Y GTRHNVGFEMVD IA EGI+++++ K+ G G IG VPV++ K
Sbjct: 17 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76
Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
PQ++MN SG+++G + +YY++PL+ +L+I+DD LP +RL KGGHG HNG +
Sbjct: 77 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQ 131
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB:
4djj_A* 4erx_A 4dhw_A
Length = 194
Score = 195 bits (498), Expect = 3e-64
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLA 133
LIVGLGNPG +Y+ TRHN G V+ +A A+G+S V+ + GK V L
Sbjct: 4 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLL 63
Query: 134 KPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
P T+MN SGQSV ++ +++I +LV D+LD+P +L GGHGGHNG +
Sbjct: 64 IPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLR 119
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A
{Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A
3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Length = 191
Score = 195 bits (497), Expect = 4e-64
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLA 133
P L+VGLGNPG Y TRHN+GF + D +A G + A G ++LA
Sbjct: 4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 134 KPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
KP+ +MN SG+ +G + +Y + ++VI DDLDL F ++RL GG GGHNG +
Sbjct: 64 KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics
center for infectious DI RNA; HET: CIT; 1.65A
{Burkholderia thailandensis E264}
Length = 222
Score = 192 bits (490), Expect = 1e-62
Identities = 52/127 (40%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Query: 64 VSPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGK 122
+ + + LIVGLGNPG +Y TRHN GF +VD +A G ++ F + K
Sbjct: 12 LEAQTQGPGSMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAK 71
Query: 123 GFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGH 182
+ V L +PQT+MN SGQSV ++ ++KI ++LV D+LDLP ++L GG
Sbjct: 72 ARLYGEEVHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGS 131
Query: 183 GGHNGYK 189
GGHNG K
Sbjct: 132 GGHNGLK 138
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1
PDB: 3ofv_A
Length = 193
Score = 191 bits (487), Expect = 1e-62
Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 76 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAK 134
LIVGL NPG +Y TRHN G VD +AE + F + + +G V L
Sbjct: 3 KLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62
Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
P TFMN SG++V ++ S+++I ++LV D+LDLP + GGHGGHNG K
Sbjct: 63 PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLK 117
>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii}
Length = 193
Score = 190 bits (486), Expect = 2e-62
Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 76 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAK 134
LIVGLGNPG +Y TRHN GF V+ +A+ GI++ + F G+G I V L
Sbjct: 5 SLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64
Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
P T+MN SGQSV +Y+I + +L+ D+LD+ +RL GGHGGHNG +
Sbjct: 65 PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLR 119
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Length = 207
Score = 188 bits (481), Expect = 2e-61
Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLA 133
+I+GLGN GK+Y TRHNVG + IA+ S SS + K I V+L
Sbjct: 23 IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLV 82
Query: 134 KPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
P T+MN SG +V + ++YKI ++LV+ D+LD+ ++RL GGHGGHNG +
Sbjct: 83 FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLR 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.012
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 24/90 (26%)
Query: 83 NPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNAS 142
NPG+ +V+ + + G V VN+ NV Q ++ A+
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY----------NVE-----NQQYV-AA 1856
Query: 143 G-----QSVGSIVSYYK---IPLKQVLVIF 164
G +V +++++ K I + ++
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSL 1886
Score = 34.6 bits (79), Expect = 0.015
Identities = 35/174 (20%), Positives = 53/174 (30%), Gaps = 49/174 (28%)
Query: 35 W-GRRTRMSRSPSNSTIRNFSSSISNEESLVSP-------KPKQQQQHPWLIVGLGN--- 83
+ G R + ++ S+ N E + SP +Q Q + V N
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY----VNKTNSHL 360
Query: 84 -PGKQ-----YNGTRHNV---------GFEM-VDAIAEAEGISVSSVNF---KAHFGKGF 124
GKQ NG ++ V G + + G+ S + F K F F
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 125 IGNVPVML---------AKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDL 169
+PV A + +V +IP V FD DL
Sbjct: 421 ---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP---VYDTFDGSDL 468
Score = 28.1 bits (62), Expect = 2.1
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 27/122 (22%)
Query: 80 GLGNPG-------KQYNGTRHNVGFEMVDAIAEA-EGISVSSVNFKAHFGKGFIGNVPVM 131
G GN Y VG +++ AE + ++++ + F +G N+
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQGL--NILEW 218
Query: 132 LAKPQT-----FMNASGQSVGSIVSYYKIPLKQV---LVIFDDLDLPFSKMRLLPKG--G 181
L P ++ + +S I + Q+ +V L ++R KG G
Sbjct: 219 LENPSNTPDKDYLLSIP------ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 182 HG 183
H
Sbjct: 273 HS 274
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta
propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A
{Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A*
Length = 468
Score = 30.4 bits (68), Expect = 0.30
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 19 IHHSIRFPLKHSPLCCWGRRTRMSRSP-SNSTIRNFSSSISNEESLVSPKPKQQQQHPWL 77
H + PL RRTR+ + + NF +++ + V
Sbjct: 277 YHDRNYKDISGDPLNDPNRRTRLQKVYWNADGTPNFGIPVADGVTPVRFSSYNYPDRYIR 336
Query: 78 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHF 120
+ + F +V +A + IS+ S N+ ++
Sbjct: 337 HWDFRARIEANVTNLADSQFRVVTGLAGSGTISLESANYPGYY 379
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria
isoprenoid biosynthesis and prenylation pathways ISPF;
2.26A {Plasmodium vivax sai-1}
Length = 187
Score = 28.9 bits (65), Expect = 0.70
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIG 126
E+V I+ A GIS S V+ K H G +G
Sbjct: 139 EIVRNISSALGISESQVSLKGKTHEQLGPVG 169
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural
genomics, TETR/CCRR FA helix turn helix DNA binding
domain, PSI; 2.20A {Salmonella typhimurium} SCOP:
a.4.1.9 a.121.1.1
Length = 224
Score = 28.1 bits (62), Expect = 1.5
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 96 GFE-MVDAIAEAEGISVSSVNFKAHFG 121
G IA G +++++ + +FG
Sbjct: 29 GLHATTRDIAALAGQNIAAITY--YFG 53
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Length = 170
Score = 27.7 bits (62), Expect = 1.6
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 100 VDAIAEAEGISVS 112
++ +A+ +GISV+
Sbjct: 98 IEVLAQEKGISVN 110
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes,
MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase;
HET: C5P; 2.30A {Arabidopsis thaliana}
Length = 160
Score = 27.4 bits (62), Expect = 2.1
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIG 126
+ +++ G S VN KA H +G
Sbjct: 114 TIRSNLSKLLGADPSVVNLKAKTHEKVDSLG 144
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Length = 206
Score = 27.3 bits (61), Expect = 2.6
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 88 YNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFG 121
+ G + +A+A G S+S ++ HFG
Sbjct: 26 FYGVS-------IRELAQAAGASISMIS--YHFG 50
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 27.8 bits (62), Expect = 2.7
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 95 VGFEMVDAIAEAEGISVSS 113
+GF D + +A G ++
Sbjct: 52 IGFLTADKLWQARGGALDD 70
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha
beta, homotrimer, synthase, lyase; HET: FPP; 1.60A
{Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A*
1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Length = 159
Score = 27.0 bits (61), Expect = 2.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIG 126
+M +A V+ +N KA GF G
Sbjct: 113 DMRQVLAADLNADVADINVKATTTEKLGFTG 143
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid,
lyase, isoprene biosynthesis; HET: CDP; 1.8A
{Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A*
3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A*
1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A*
1yqn_A* 3ghz_A* 3t80_A*
Length = 160
Score = 27.0 bits (61), Expect = 2.8
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIG 126
+M IAE G + VN KA GF G
Sbjct: 112 QMRVFIAEDLGCHMDDVNVKATTTEKLGFTG 142
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid,
isoprene biosynthe lyase, metal-binding, structural
genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A
3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A*
3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A*
3ike_A*
Length = 183
Score = 27.2 bits (61), Expect = 2.8
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIG 126
M IA + + VN KA + G++G
Sbjct: 134 AMRANIAADLDLPLDRVNVKAKTNEKLGYLG 164
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.65A {Francisella tularensis subsp}
Length = 162
Score = 26.7 bits (60), Expect = 3.4
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIG 126
+M +A I +S +N KA GFIG
Sbjct: 117 KMRACLANILEIQISQINIKATTTERLGFIG 147
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid,
non-mevalonate, riken structural genomics/proteomics
initiative, RSGI; 1.52A {Thermus thermophilus} SCOP:
d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Length = 152
Score = 26.6 bits (60), Expect = 4.0
Identities = 2/21 (9%), Positives = 8/21 (38%)
Query: 98 EMVDAIAEAEGISVSSVNFKA 118
+VD+++ + +
Sbjct: 111 ALVDSLSRLMRLPQDRIGLTF 131
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 25.9 bits (57), Expect = 5.2
Identities = 5/31 (16%), Positives = 17/31 (54%)
Query: 102 AIAEAEGISVSSVNFKAHFGKGFIGNVPVML 132
++A+A+GI+ ++F + + + + +
Sbjct: 2 SLAQADGIAFRELSFPEALKRAEVEDKLLFV 32
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription
regulation, DNA-binding, family, transcription,
transcriptional regulator; 2.10A {Bacillus cereus} PDB:
2wv1_A 2jk3_A 2fx0_A
Length = 186
Score = 26.2 bits (58), Expect = 5.2
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 88 YNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFG 121
Y GT + IA+ ++V+ ++ +F
Sbjct: 25 YEGTS-------IQEIAKEAKVNVAMASY--YFN 49
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase;
HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Length = 336
Score = 26.4 bits (59), Expect = 6.0
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 86 KQYNGTRHNVGFEMVDAIAEAEGISVSSV 114
K + F A EGI V +
Sbjct: 102 KNFEADLKE--FNEAIKEARTEGIDVRYI 128
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding
subunit DHAK; dihydroxyacetone kinase subunit,
tranferase; 2.50A {Lactococcus lactis subsp}
Length = 332
Score = 26.4 bits (59), Expect = 6.1
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 86 KQYNGTRHNVGFEMVDAIAEAEGISVSSV 114
K Y G N FEM +AE E I V +
Sbjct: 106 KNYLGDVMN--FEMAREMAEMEEIKVEQI 132
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A
{Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A*
1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Length = 366
Score = 26.5 bits (59), Expect = 6.3
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 86 KQYNGTRHNVGFEMVDAIAEAEGISVSSV 114
K Y G N FE + G+ V++V
Sbjct: 114 KNYTGDILN--FETATELLHDSGVKVTTV 140
>1un8_A Dihydroxyacetone kinase; transferase; HET: MYY; 2.5A {Citrobacter
freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A*
Length = 552
Score = 26.5 bits (59), Expect = 7.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 86 KQYNGTRHNVGFEMVDAIAEAEGISVSSV 114
K Y G R N F + A G +V +
Sbjct: 109 KNYTGDRLN--FGLAAEKARRLGYNVEML 135
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids,
nonmevalonate, transferase; HET: C GPP; 2.3A
{Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB:
1w57_A*
Length = 371
Score = 26.1 bits (58), Expect = 7.7
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIG 126
M IA + +N KA GFIG
Sbjct: 320 AMQSNIAHTLDLDEFRINVKATTTEKLGFIG 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0826 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,850,622
Number of extensions: 156421
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 33
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)