RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029635
(190 letters)
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
Crs2 {Maize (Zea mays) [TaxId: 4577]}
Length = 191
Score = 116 bits (291), Expect = 1e-33
Identities = 64/113 (56%), Positives = 87/113 (76%)
Query: 75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
PWLI GLGNPG +Y GTRHNVGFEMVD IA EGI+++++ K+ G G IG VPV++ K
Sbjct: 3 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 62
Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 187
PQ++MN SG+++G + +YY++PL+ +L+I+DD LP +RL KGGHG HNG
Sbjct: 63 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNG 115
>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
[TaxId: 562]}
Length = 193
Score = 113 bits (283), Expect = 2e-32
Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 77 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKP 135
LIVGL NPG +Y TRHN G VD +AE + F + + +G V L P
Sbjct: 4 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 187
TFMN SG++V ++ S+++I ++LV D+LDLP + GGHGGHNG
Sbjct: 64 TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNG 115
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 353
Score = 30.8 bits (69), Expect = 0.092
Identities = 12/74 (16%), Positives = 18/74 (24%), Gaps = 6/74 (8%)
Query: 70 QQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFI---- 125
Q + I K Y D ++ +GI V + G
Sbjct: 250 SQGNSSYAIYERQGQNK-YVADFQITDGPETDGTSDTDGIDVLGFGLGPEYPFGLFVAQN 308
Query: 126 -GNVPVMLAKPQTF 138
N+ Q F
Sbjct: 309 GENIDHGQKANQNF 322
>d1gx1a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase IspF {Escherichia coli [TaxId: 562]}
Length = 157
Score = 27.1 bits (60), Expect = 0.90
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIGN 127
+M IAE G + VN KA GF G
Sbjct: 112 QMRVFIAEDLGCHMDDVNVKATTTEKLGFTGR 143
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
{Bacillus subtilis [TaxId: 1423]}
Length = 68
Score = 25.5 bits (56), Expect = 1.3
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 85 GKQYNGTRHNVGFEMVDAIAEAEGISVS 112
+ N + ++ ++ +SV
Sbjct: 32 SSIERNLQTNPSIQFLEKVSAVLDVSVH 59
>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase
{Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 360
Score = 27.2 bits (59), Expect = 1.5
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 155 IPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHN 186
+PL V + + + + + G H HN
Sbjct: 295 VPLSFVDTVLELVPAEHLNLVVEKDGDHCCHN 326
>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase IspF {Shewanella oneidensis [TaxId: 70863]}
Length = 158
Score = 25.9 bits (57), Expect = 2.1
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIGN 127
+M +A V+ +N KA GF G
Sbjct: 112 DMRQVLAADLNADVADINVKATTTEKLGFTGR 143
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus
thermophilus [TaxId: 274]}
Length = 302
Score = 26.3 bits (56), Expect = 2.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 99 MVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
+V + + G + + G G NV V LA+
Sbjct: 11 LVALVPQEPGHLRGKRLLEVYVG-GAEVNVAVALAR 45
>d1w55a2 d.79.5.1 (A:208-370) IspD/ispF bifunctional enzyme, MECDP
synthase domain {Campylobacter jejuni [TaxId: 197]}
Length = 163
Score = 25.9 bits (57), Expect = 2.7
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIGN 127
M IA + +N KA GFIG
Sbjct: 113 AMQSNIAHTLDLDEFRINVKATTTEKLGFIGR 144
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 24.2 bits (53), Expect = 4.1
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 139 MNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLP 178
++ Q +G I + V+V+ + RLLP
Sbjct: 12 IDQGRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLP 51
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 25.3 bits (54), Expect = 4.7
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 32 LCCWGRRTRMSRSPSNSTIRNFSSSIS 58
C G+ S + + +S ++
Sbjct: 320 TLCCGKNPLGDDEASTTVSKTETSQVA 346
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
{Escherichia coli [TaxId: 562]}
Length = 347
Score = 25.2 bits (55), Expect = 5.4
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 86 KQYNGTRHNVGFEMVDAIAEAEGISVSSV 114
K Y G N FE + G+ V++V
Sbjct: 95 KNYTGDILN--FETATELLHDSGVKVTTV 121
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 308
Score = 25.2 bits (53), Expect = 5.5
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 99 MVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
+++ A + G F+ H G N V K
Sbjct: 10 LIEFNALSPGPLRHVSYFEKHVA-GSEANYCVAFIK 44
>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 116
Score = 24.0 bits (52), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 157 LKQVLVIFDDLDLPFSKM 174
LKQV+V+ DDL L K+
Sbjct: 2 LKQVIVVRDDLKLSRGKL 19
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 126
Score = 24.0 bits (52), Expect = 8.7
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 72 QQHPWLIVGLGNPGKQ-YNGTRHNVGFEMVDAI 103
++ IVG+G G + FE+
Sbjct: 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFF 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 698,807
Number of extensions: 29622
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 17
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)