BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029636
MVMELTELSLAPTHCVVVDKSNSSSESEDNPSRKRKFLSDFSLLKTEPAIQTSVDLQIKD
PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSSVSNCTSAADDDE
SNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQSSSAKVSGTK
SMINTLSLLN

High Scoring Gene Products

Symbol, full name Information P value
AT4G08910 protein from Arabidopsis thaliana 1.4e-09
AT1G78170 protein from Arabidopsis thaliana 3.2e-06
AT5G06270 protein from Arabidopsis thaliana 5.5e-06
AT1G22250 protein from Arabidopsis thaliana 1.0e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029636
        (190 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2138723 - symbol:AT4G08910 "AT4G08910" species...   139  1.4e-09   1
TAIR|locus:2194709 - symbol:AT1G78170 "AT1G78170" species...   119  3.2e-06   1
TAIR|locus:2164235 - symbol:AT5G06270 "AT5G06270" species...   105  5.5e-06   1
TAIR|locus:2015026 - symbol:AT1G22250 "AT1G22250" species...   115  1.0e-05   1


>TAIR|locus:2138723 [details] [associations]
            symbol:AT4G08910 "AT4G08910" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:BT030085
            IPI:IPI00525781 RefSeq:NP_192630.2 UniGene:At.50328 IntAct:A2RVU4
            EnsemblPlants:AT4G08910.1 GeneID:826469 KEGG:ath:AT4G08910
            TAIR:At4g08910 eggNOG:NOG239110 HOGENOM:HOG000236381
            InParanoid:A2RVU4 OMA:CKASPAC PhylomeDB:A2RVU4
            ProtClustDB:CLSN2918574 Genevestigator:A2RVU4 Uniprot:A2RVU4
        Length = 212

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/113 (34%), Positives = 53/113 (46%)

Query:    53 SVDLQIK-DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNIXXXXXXN 111
             S+DL++   P  +D     DL +    Y   +  KK   + E    L LE          
Sbjct:    88 SLDLELNLSPSLIDLNHHHDLSNYNKGYEEDERKKK---MMEKGSVLGLETK---KSMSR 141

Query:   112 CTSAADDDESNNKHHLSSASNN-MVALACMNCHLLVILSKSSPSCPNCKFVHS 163
                  DDD  +    +   S   MVA  CM CH+LV+L K+SP+CPNCKF+HS
Sbjct:   142 VAFDLDDDCCDRGDGVGGRSEEEMVARVCMKCHMLVMLCKASPACPNCKFMHS 194


>TAIR|locus:2194709 [details] [associations]
            symbol:AT1G78170 "AT1G78170" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:BT003949
            EMBL:BT005045 IPI:IPI00546380 RefSeq:NP_177941.2 UniGene:At.34328
            DNASU:844153 EnsemblPlants:AT1G78170.1 GeneID:844153
            KEGG:ath:AT1G78170 TAIR:At1g78170 eggNOG:NOG260913
            HOGENOM:HOG000239816 InParanoid:Q84JP5 OMA:SITFDFE PhylomeDB:Q84JP5
            ProtClustDB:CLSN2680125 ArrayExpress:Q84JP5 Genevestigator:Q84JP5
            Uniprot:Q84JP5
        Length = 221

 Score = 119 (46.9 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query:   120 ESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQ 170
             E  + + +      MV   CM CH+LV+L  S+P CPNCKF+H   +  T+
Sbjct:   159 EGGDDNDVDHKGQEMVTTVCMKCHMLVMLCTSTPVCPNCKFMHPHDHSSTK 209


>TAIR|locus:2164235 [details] [associations]
            symbol:AT5G06270 "AT5G06270" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB006700
            EMBL:AY084326 EMBL:BT003828 EMBL:BT005129 IPI:IPI00516753
            RefSeq:NP_196245.1 UniGene:At.32874 IntAct:Q9FNI1
            EnsemblPlants:AT5G06270.1 GeneID:830515 KEGG:ath:AT5G06270
            TAIR:At5g06270 eggNOG:NOG314130 HOGENOM:HOG000239136
            InParanoid:Q9FNI1 OMA:LDFLHEN PhylomeDB:Q9FNI1
            ProtClustDB:CLSN2686846 ArrayExpress:Q9FNI1 Genevestigator:Q9FNI1
            Uniprot:Q9FNI1
        Length = 122

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 24/81 (29%), Positives = 41/81 (50%)

Query:   111 NCTSAA-DDDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCK------FVHS 163
             +C S+  + DE + ++  S  + +MV + C  C + V+LS+  P CP CK      F+H 
Sbjct:    42 SCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHE 101

Query:   164 LPNQQTQSSSAKVSGTKSMIN 184
                    +++A  SG K+  N
Sbjct:   102 NATNANANAAAASSGRKTRRN 122


>TAIR|locus:2015026 [details] [associations]
            symbol:AT1G22250 "AT1G22250" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC073942
            UniGene:At.28031 UniGene:At.41612 HOGENOM:HOG000239816
            ProtClustDB:CLSN2680125 EMBL:AK117944 IPI:IPI00526771 PIR:C86355
            RefSeq:NP_173644.2 EnsemblPlants:AT1G22250.1 GeneID:838830
            KEGG:ath:AT1G22250 TAIR:At1g22250 eggNOG:NOG260255
            InParanoid:Q9LM21 OMA:TIMEKDE PhylomeDB:Q9LM21
            Genevestigator:Q9LM21 Uniprot:Q9LM21
        Length = 200

 Score = 115 (45.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query:   118 DDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQ 170
             DD+ N K         M+   CM CH+LV+L KS+  CPNCKF+H   +  T+
Sbjct:   142 DDDDNQK------KQEMITTVCMKCHMLVMLCKSTLVCPNCKFMHHDDHSSTK 188


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.126   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      190       172   0.00093  108 3  11 23  0.42    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.57u 0.14s 16.71t   Elapsed:  00:00:01
  Total cpu time:  16.57u 0.14s 16.71t   Elapsed:  00:00:01
  Start:  Sat May 11 05:31:46 2013   End:  Sat May 11 05:31:47 2013

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