BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029636
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
Length = 167
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 8 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 8 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product
Derivatives
Length = 166
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 4 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 37
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
LP WE+ + SGR+YYFN ++ W P
Sbjct: 2 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 32
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 36.2 bits (82), Expect = 0.010, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
PLP WER D++ G++YYFN ++ +W P
Sbjct: 8 PLPPGWERRTDVE-GKVYYFNVRTLTTTWERP 38
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline
Recognition By Group Iv Ww Domains
Length = 167
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 8 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 41
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNAAQWERP 37
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo
Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YYFN ++ W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2KCF|A Chain A, The Nmr Solution Structure Of The Isolated Apo Pin1 Ww
Domain
Length = 36
Score = 35.4 bits (80), Expect = 0.019, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
LP WE+ + SGR+YYFN ++ W P
Sbjct: 4 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 34
>pdb|2JX8|A Chain A, Solution Structure Of Hpcif1 Ww Domain
Length = 52
Score = 34.7 bits (78), Expect = 0.030, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 66 WERCLDLQSGRMYYFNRKSSKKSWSLP 92
WE+C + R YYFNR +++ W +P
Sbjct: 15 WEKCWSRRENRPYYFNRFTNQSLWEMP 41
>pdb|2LB3|A Chain A, Structure Of The Ww Domain Of Pin1 In Complex With A
Human Phosphorylated Smad3 Derived Peptide
Length = 36
Score = 34.3 bits (77), Expect = 0.039, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
LP WE+ + SGR+YYFN ++ W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>pdb|1I6C|A Chain A, Solution Structure Of Pin1 Ww Domain
pdb|1I8G|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With
Cdc25 Phosphothreonine Peptide
pdb|1I8H|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With
Human Tau Phosphothreonine Peptide
Length = 39
Score = 34.3 bits (77), Expect = 0.046, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
LP WE+ + SGR+YYFN ++ W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In
Complex With A Human Smad1 Derived Peptide
Length = 38
Score = 33.9 bits (76), Expect = 0.060, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 58 IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ PLP WE+ + Q G +YY N K+ SW P
Sbjct: 3 MEGPLPDGWEQAMT-QDGEIYYINHKNKTTSWLDP 36
>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 32.7 bits (73), Expect = 0.13, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
PLP WE+ + Q G +YY N K+ SW P
Sbjct: 2 PLPDGWEQAMT-QDGEIYYINHKNKTTSWLDP 32
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFN 81
++ LP WE+ + SGR+YYFN
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFN 26
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + SGR+YY N ++ W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYANHITNASQWERP 37
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + +GR+YYFN ++ W P
Sbjct: 4 EEKLPPGWEK--RMSNGRVYYFNHITNASQWERP 35
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
++ LP WE+ + GR+YYFN ++ W P
Sbjct: 4 EEKLPPGWEKRMSA-DGRVYYFNHITNASQWERP 36
>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy
Homolog E3 Ubiquitin Protein Ligase (Itch)
Length = 43
Score = 30.0 bits (66), Expect = 0.75, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
LP WE+ +D Q GR+YY + + +W P
Sbjct: 8 LPPGWEQRVD-QHGRVYYVDHVEKRTTWDRP 37
>pdb|2L4J|A Chain A, Yap Ww2
Length = 46
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
PLP WE+ + + G +YY N K+ SW P
Sbjct: 11 PLPEGWEQAITPE-GEIYYINHKNKTTSWLDP 41
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 121 SNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPN 166
S++ HH+ + MVA+ +N HL + P F+H P
Sbjct: 2 SHHHHHMKKIEHKMVAVNGLNMHLAEL-----GEGPTILFIHGFPE 42
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 121 SNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPN 166
S++ HH+ + MVA+ +N HL + P F+H P
Sbjct: 2 SHHHHHMKKIEHKMVAVNGLNMHLAEL-----GEGPTILFIHGFPE 42
>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2
Length = 36
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
PLP WE +D GR YY N + W P
Sbjct: 4 PLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRP 34
>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived
Peptide
Length = 34
Score = 28.5 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
LP WE D + GR YY N + +W+ P
Sbjct: 3 LPSGWEERKDAK-GRTYYVNHNNRTTTWTRP 32
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
Length = 36
Score = 28.5 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
LP WE D + GR YY N + +W+ P
Sbjct: 5 LPSGWEERKDAK-GRTYYVNHNNRTTTWTRP 34
>pdb|3ECQ|A Chain A, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
pdb|3ECQ|B Chain B, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
Length = 1531
Score = 28.1 bits (61), Expect = 2.7, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 63 PLDWE---RCLDLQSGRMYYFNRKSSKKSWSLPENKQK 97
P +W+ + L + YYFN ++ +W+LP + K
Sbjct: 930 PWNWDANGKKLSTDKEKXYYFNTQAGATTWTLPSDWAK 967
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In
Complex With A Phosphorylated Ptpy Motif Derived From
Human Smad3
Length = 35
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
LP WE D + GR YY N + +W+ P
Sbjct: 2 LPSGWEERKDAK-GRTYYVNHNNRTTTWTRP 31
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 66 WERCLDLQSGRMYYFNRKSSKKSWSLP 92
W+ D SGR+YY+N + K +W P
Sbjct: 4 WKEAKDA-SGRIYYYNTLTKKSTWEKP 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.126 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,458,994
Number of Sequences: 62578
Number of extensions: 141733
Number of successful extensions: 442
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 38
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)