Query 029636
Match_columns 190
No_of_seqs 147 out of 173
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 02:42:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kxq_A E3 ubiquitin-protein li 99.5 1.8E-14 6.3E-19 105.9 5.0 62 32-94 20-87 (90)
2 1tk7_A CG4244-PB; WW domain, n 99.5 1.1E-14 3.7E-19 106.7 3.4 61 32-93 23-87 (88)
3 2dwv_A Salvador homolog 1 prot 99.3 5.5E-13 1.9E-17 89.5 3.5 44 42-94 2-45 (49)
4 2law_A Yorkie homolog; YAP, SM 99.3 4.1E-13 1.4E-17 85.3 2.7 34 59-93 4-37 (38)
5 2ysf_A E3 ubiquitin-protein li 99.3 2.3E-12 8E-17 82.7 3.3 34 59-93 5-38 (40)
6 1wr3_A Ubiquitin-protein ligas 99.3 2.5E-12 8.7E-17 80.2 3.0 33 60-93 3-35 (36)
7 1wr7_A NEDD4-2; all-beta, liga 99.3 1.8E-12 6.1E-17 83.4 2.4 34 59-93 6-39 (41)
8 2zaj_A Membrane-associated gua 99.2 3.2E-12 1.1E-16 86.0 3.4 41 53-94 5-45 (49)
9 1i5h_W Rnedd4, ubiquitin ligas 99.2 2.8E-12 9.6E-17 86.2 3.1 38 56-94 6-43 (50)
10 2ysg_A Syntaxin-binding protei 99.2 3.2E-12 1.1E-16 82.0 3.2 34 59-93 5-38 (40)
11 1wr4_A Ubiquitin-protein ligas 99.2 2.9E-12 9.8E-17 79.4 2.8 34 59-93 2-35 (36)
12 2kyk_A E3 ubiquitin-protein li 99.2 3.7E-12 1.3E-16 80.9 3.0 35 59-94 4-38 (39)
13 2l4j_A YES-associated protein 99.2 3.2E-12 1.1E-16 84.6 2.8 36 58-94 8-43 (46)
14 2djy_A SMAD ubiquitination reg 99.2 4.9E-12 1.7E-16 82.3 2.9 35 59-94 5-39 (42)
15 2ez5_W Dnedd4, E3 ubiquitin-pr 99.2 5.1E-12 1.7E-16 83.5 2.7 36 58-94 7-42 (46)
16 1e0m_A Wwprototype; SH3 protot 99.2 6.1E-12 2.1E-16 78.4 2.8 34 60-94 2-35 (37)
17 1o6w_A PRP40, PRE-mRNA process 99.2 1E-12 3.5E-17 92.7 -1.0 59 33-94 11-72 (75)
18 1ymz_A CC45; artificial protei 99.2 6.4E-12 2.2E-16 81.2 2.7 34 60-94 7-40 (43)
19 2jmf_A E3 ubiquitin-protein li 99.2 9E-12 3.1E-16 84.9 3.5 37 57-94 14-50 (53)
20 2dmv_A Itchy homolog E3 ubiqui 99.2 8.5E-12 2.9E-16 81.0 3.2 35 59-94 5-39 (43)
21 2kpz_A E3 ubiquitin-protein li 99.2 6.1E-12 2.1E-16 83.9 2.5 35 59-94 10-44 (49)
22 2yse_A Membrane-associated gua 99.2 7.5E-12 2.6E-16 87.6 2.4 42 52-94 4-45 (60)
23 2ysd_A Membrane-associated gua 99.2 1.4E-11 4.6E-16 85.2 3.7 42 52-94 5-46 (57)
24 2jxw_A WW domain-binding prote 99.1 2.8E-11 9.7E-16 86.1 4.7 59 33-94 14-75 (75)
25 2ysb_A Salvador homolog 1 prot 99.1 1.5E-11 5.1E-16 82.5 2.9 35 59-94 9-43 (49)
26 2ysh_A GAS-7, growth-arrest-sp 99.1 2.6E-11 8.9E-16 77.1 3.0 35 59-94 5-39 (40)
27 1wmv_A WWOX, WW domain contain 99.1 3.9E-11 1.3E-15 81.9 3.7 35 59-94 9-43 (54)
28 2l5f_A PRE-mRNA-processing fac 99.1 2E-11 6.9E-16 90.1 0.4 59 33-94 23-84 (92)
29 2jv4_A Peptidyl-prolyl CIS/tra 99.1 7.8E-11 2.7E-15 80.5 3.2 37 59-95 5-41 (54)
30 3l4h_A E3 ubiquitin-protein li 99.0 5.3E-11 1.8E-15 92.2 1.0 49 31-93 55-103 (109)
31 1jmq_A YAP65, 65 kDa YES-assoc 99.0 1.9E-10 6.6E-15 75.1 2.9 38 56-94 3-40 (46)
32 2ho2_A Fe65 protein, amyloid b 99.0 1.8E-10 6.1E-15 74.0 2.6 33 60-94 2-34 (38)
33 2ysc_A Amyloid beta A4 precurs 98.9 3.9E-10 1.3E-14 72.7 2.9 33 59-93 6-38 (39)
34 1tk7_A CG4244-PB; WW domain, n 98.8 9.5E-10 3.2E-14 80.4 2.6 37 57-94 8-44 (88)
35 2jx8_A Hpcif1, phosphorylated 98.8 8.1E-10 2.8E-14 74.9 0.7 35 60-94 9-43 (52)
36 2kxq_A E3 ubiquitin-protein li 98.8 2.5E-09 8.6E-14 78.4 3.0 36 59-95 7-42 (90)
37 2e45_A Fe65 protein, amyloid b 98.7 4.1E-09 1.4E-13 73.2 3.1 37 56-94 14-50 (55)
38 3tc5_A Peptidyl-prolyl CIS-tra 98.6 9.7E-09 3.3E-13 82.7 2.8 35 60-94 8-42 (166)
39 2ysi_A Transcription elongatio 98.5 4.1E-08 1.4E-12 63.2 3.2 35 59-94 5-39 (40)
40 2l5f_A PRE-mRNA-processing fac 98.5 3E-08 1E-12 73.0 2.3 35 59-94 9-43 (92)
41 1e0n_A Hypothetical protein; Y 98.4 6.3E-08 2.2E-12 58.0 1.9 27 64-92 1-27 (27)
42 1ywi_A Formin-binding protein 98.4 9.3E-08 3.2E-12 61.7 1.7 33 60-93 8-40 (41)
43 1e0l_A Formin binding protein; 98.3 2.4E-07 8.3E-12 58.4 2.7 33 61-94 3-35 (37)
44 1eg3_A Dystrophin; EF-hand lik 98.3 1.2E-07 4E-12 81.9 1.4 34 59-93 9-42 (261)
45 3olm_A E3 ubiquitin-protein li 98.2 3.5E-07 1.2E-11 83.1 2.9 36 59-95 6-41 (429)
46 1o6w_A PRP40, PRE-mRNA process 98.1 6.9E-07 2.4E-11 62.7 1.5 30 64-94 2-31 (75)
47 2jxw_A WW domain-binding prote 97.9 2.8E-06 9.7E-11 60.1 2.1 30 64-94 5-34 (75)
48 1yw5_A Peptidyl prolyl CIS/tra 97.5 4.9E-05 1.7E-09 60.8 3.2 35 60-94 6-40 (177)
49 2dk1_A WW domain-binding prote 97.5 6.7E-05 2.3E-09 50.5 3.1 28 65-93 8-35 (50)
50 2dk7_A Transcription elongatio 96.3 0.0016 5.6E-08 47.2 2.2 35 61-96 16-51 (73)
51 2ysd_A Membrane-associated gua 96.1 0.0031 1.1E-07 43.1 2.8 30 32-65 25-57 (57)
52 2djy_A SMAD ubiquitination reg 94.3 0.021 7E-07 36.6 2.1 21 32-52 18-41 (42)
53 2ez5_W Dnedd4, E3 ubiquitin-pr 94.1 0.024 8.2E-07 36.9 2.0 21 32-52 21-44 (46)
54 2zaj_A Membrane-associated gua 93.9 0.026 8.8E-07 37.4 1.9 20 32-51 24-46 (49)
55 2law_A Yorkie homolog; YAP, SM 93.8 0.024 8.4E-07 35.2 1.6 18 32-49 17-37 (38)
56 2ysf_A E3 ubiquitin-protein li 93.8 0.026 8.9E-07 35.5 1.7 19 32-50 18-39 (40)
57 2ysg_A Syntaxin-binding protei 93.8 0.027 9.3E-07 35.4 1.8 18 32-49 18-38 (40)
58 2kpz_A E3 ubiquitin-protein li 93.7 0.028 9.7E-07 36.8 1.9 21 32-52 23-46 (49)
59 2dmv_A Itchy homolog E3 ubiqui 93.7 0.03 1E-06 35.6 1.9 20 32-51 18-40 (43)
60 1wmv_A WWOX, WW domain contain 93.6 0.045 1.5E-06 36.8 2.8 24 32-55 22-48 (54)
61 1wr3_A Ubiquitin-protein ligas 93.6 0.032 1.1E-06 33.9 1.8 18 32-49 15-35 (36)
62 1i5h_W Rnedd4, ubiquitin ligas 93.5 0.034 1.2E-06 36.7 2.1 20 32-51 22-44 (50)
63 2kyk_A E3 ubiquitin-protein li 93.4 0.037 1.3E-06 34.4 1.9 19 32-50 17-38 (39)
64 2jmf_A E3 ubiquitin-protein li 93.3 0.036 1.2E-06 37.2 1.9 20 32-51 29-51 (53)
65 1wr4_A Ubiquitin-protein ligas 93.0 0.042 1.4E-06 33.1 1.8 18 32-49 15-35 (36)
66 2ysb_A Salvador homolog 1 prot 92.9 0.046 1.6E-06 36.1 1.9 20 32-51 22-44 (49)
67 2dwv_A Salvador homolog 1 prot 92.8 0.045 1.5E-06 36.1 1.8 19 33-51 25-46 (49)
68 1wr7_A NEDD4-2; all-beta, liga 92.8 0.037 1.3E-06 34.9 1.3 19 32-50 19-40 (41)
69 2l4j_A YES-associated protein 92.8 0.052 1.8E-06 35.3 2.0 20 32-51 22-44 (46)
70 2yse_A Membrane-associated gua 92.8 0.023 7.9E-07 39.3 0.3 27 32-58 24-53 (60)
71 1e0m_A Wwprototype; SH3 protot 92.4 0.061 2.1E-06 32.6 1.9 19 32-50 14-35 (37)
72 2jv4_A Peptidyl-prolyl CIS/tra 92.2 0.052 1.8E-06 36.6 1.5 22 31-52 18-42 (54)
73 2ysh_A GAS-7, growth-arrest-sp 91.6 0.083 2.8E-06 32.8 1.9 19 32-50 18-39 (40)
74 1ymz_A CC45; artificial protei 90.8 0.11 3.8E-06 32.7 1.9 18 33-50 20-40 (43)
75 1jmq_A YAP65, 65 kDa YES-assoc 90.3 0.13 4.5E-06 32.8 1.9 21 32-52 19-42 (46)
76 3c2i_A Methyl-CPG-binding prot 88.8 0.25 8.7E-06 37.3 2.8 46 29-87 3-55 (97)
77 2jx8_A Hpcif1, phosphorylated 85.5 0.32 1.1E-05 32.4 1.5 21 31-51 21-44 (52)
78 3l4h_A E3 ubiquitin-protein li 85.5 0.37 1.3E-05 37.0 2.0 20 32-51 83-105 (109)
79 1ryq_A DNA-directed RNA polyme 84.4 0.41 1.4E-05 34.2 1.7 21 137-161 12-32 (69)
80 3p8b_A DNA-directed RNA polyme 83.3 0.44 1.5E-05 35.1 1.5 29 130-162 17-45 (81)
81 3tc5_A Peptidyl-prolyl CIS-tra 82.9 0.5 1.7E-05 37.5 1.9 23 31-53 20-45 (166)
82 2ho2_A Fe65 protein, amyloid b 80.5 0.75 2.6E-05 28.9 1.7 15 36-50 17-34 (38)
83 1ub1_A MECP2, attachment regio 79.1 1.7 5.9E-05 34.5 3.7 29 58-87 34-69 (133)
84 3le4_A Microprocessor complex 77.5 1.8 6E-05 31.8 3.0 37 56-93 23-59 (79)
85 3olm_A E3 ubiquitin-protein li 74.9 1.2 4E-05 40.4 1.9 23 32-54 19-44 (429)
86 2ky8_A Methyl-CPG-binding doma 74.5 1.7 5.6E-05 30.8 2.2 27 60-87 11-44 (72)
87 3vxv_A Methyl-CPG-binding doma 74.2 1.5 5.2E-05 30.8 1.9 28 59-87 3-37 (69)
88 1eg3_A Dystrophin; EF-hand lik 72.6 1.1 3.7E-05 38.5 1.0 19 32-50 22-43 (261)
89 1gh9_A 8.3 kDa protein (gene M 70.5 1.1 3.7E-05 31.9 0.5 30 135-166 3-34 (71)
90 1d9n_A Methyl-CPG-binding prot 67.1 3.1 0.00011 29.7 2.3 28 59-87 8-42 (75)
91 2apo_B Ribosome biogenesis pro 66.9 4.3 0.00015 28.1 2.9 29 135-167 5-33 (60)
92 3lpe_B DNA-directed RNA polyme 66.7 1.7 5.9E-05 29.9 0.8 21 137-161 2-22 (59)
93 2kdx_A HYPA, hydrogenase/ureas 52.1 7.6 0.00026 28.8 2.2 29 134-162 71-100 (119)
94 2aus_D NOP10, ribosome biogene 50.7 8.5 0.00029 26.7 2.1 28 135-166 4-31 (60)
95 1weo_A Cellulose synthase, cat 50.6 2.3 7.8E-05 32.1 -0.9 26 137-163 44-69 (93)
96 2egp_A Tripartite motif-contai 44.2 9.8 0.00034 24.9 1.6 27 139-165 35-66 (79)
97 2ecv_A Tripartite motif-contai 42.8 8.2 0.00028 25.3 1.0 27 139-165 42-72 (85)
98 3a43_A HYPD, hydrogenase nicke 41.3 10 0.00034 29.3 1.4 29 134-162 68-117 (139)
99 1lko_A Rubrerythrin all-iron(I 39.7 12 0.00041 30.0 1.7 28 132-160 151-179 (191)
100 1zfo_A LAsp-1; LIM domain, zin 39.6 11 0.00037 22.0 1.1 13 152-164 3-15 (31)
101 1bor_A Transcription factor PM 38.6 16 0.00055 23.1 1.9 24 139-167 29-52 (56)
102 3h0g_L DNA-directed RNA polyme 38.1 15 0.00052 25.5 1.8 32 134-165 19-51 (63)
103 1twf_L ABC10-alpha, DNA-direct 36.9 19 0.00065 25.2 2.2 31 133-163 25-56 (70)
104 2gmg_A Hypothetical protein PF 36.6 17 0.00059 27.6 2.0 30 134-164 65-96 (105)
105 2ect_A Ring finger protein 126 36.1 12 0.00042 24.6 1.0 27 139-167 41-67 (78)
106 1v54_F VI, cytochrome C oxidas 35.1 20 0.00069 26.7 2.2 30 134-164 55-91 (98)
107 3bvo_A CO-chaperone protein HS 34.9 19 0.00066 29.4 2.3 32 135-166 9-41 (207)
108 2ecw_A Tripartite motif-contai 34.8 6.7 0.00023 25.7 -0.4 27 139-165 42-72 (85)
109 1yuz_A Nigerythrin; rubrythrin 28.1 32 0.0011 27.9 2.5 27 132-160 167-194 (202)
110 3j20_Y 30S ribosomal protein S 28.0 17 0.00058 23.8 0.6 27 136-162 19-47 (50)
111 2yur_A Retinoblastoma-binding 27.8 13 0.00043 24.6 -0.0 25 139-163 39-63 (74)
112 2k2d_A Ring finger and CHY zin 26.5 54 0.0018 23.2 3.1 32 132-163 33-66 (79)
113 2i5o_A DNA polymerase ETA; zin 26.3 14 0.00048 23.3 0.0 12 153-164 10-21 (39)
114 3na7_A HP0958; flagellar bioge 25.4 14 0.00047 30.6 -0.2 29 138-166 200-236 (256)
115 1iym_A EL5; ring-H2 finger, ub 24.9 18 0.00063 22.0 0.4 23 139-163 32-54 (55)
116 2y69_F Cytochrome C oxidase su 24.7 37 0.0013 26.5 2.2 20 144-163 101-121 (129)
117 3p2a_A Thioredoxin 2, putative 21.9 1E+02 0.0035 21.7 4.0 31 134-164 3-37 (148)
118 2ct7_A Ring finger protein 31; 21.7 34 0.0012 23.8 1.3 26 137-162 26-53 (86)
119 3ztg_A E3 ubiquitin-protein li 21.5 13 0.00045 25.2 -0.9 24 139-162 37-60 (92)
120 2lcq_A Putative toxin VAPC6; P 20.6 22 0.00076 27.2 0.1 29 134-162 130-158 (165)
121 2ecy_A TNF receptor-associated 20.0 18 0.00062 23.1 -0.4 25 139-164 38-62 (66)
No 1
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.49 E-value=1.8e-14 Score=105.89 Aligned_cols=62 Identities=16% Similarity=0.400 Sum_probs=51.4
Q ss_pred cCCceeeeccc---ccccCCCccccc---ccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQTSV---DLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~~i---EL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..+|.||.||. |+|++|.....+ ......+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus 20 ~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 20 QQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp TTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEEC-TTSCEEEEETTTTEEESSCTTT
T ss_pred CCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEEC-CCCCEEEEECCCCcEecCCCCc
Confidence 47899999998 999999755432 22234689999999999 5699999999999999999994
No 2
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.49 E-value=1.1e-14 Score=106.72 Aligned_cols=61 Identities=21% Similarity=0.469 Sum_probs=51.2
Q ss_pred cCCceeeeccc---ccccCCCcccc-cccccCCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQTS-VDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~~-iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
..+|.||.||. |+|++|..... +++....+||.|||++.|. +|++||+|++|++++|++||
T Consensus 23 ~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~-~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 23 SDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTA-AGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp TTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEET-TTEEEEEETTTTEEESSSSC
T ss_pred CCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECC-CCCEEEEECCCCcEeCCCCC
Confidence 46899999988 89999965432 1233467899999999995 69999999999999999998
No 3
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=5.5e-13 Score=89.55 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=39.7
Q ss_pred cccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 42 SLLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 42 ~t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
+|+|++|.. ..+||.|||++.|. .|++||+|++|++++|++|+.
T Consensus 2 tt~W~~P~~--------~~~LP~GWe~~~d~-~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 2 SSGSSGPLE--------REGLPPGWERVESS-EFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CSSSCCSCC--------SSCCCTTEEEEEET-TTEEEEEETTTTEEESSCCCC
T ss_pred eecCcCCCC--------CCCCCcCcEEEECC-CCCEEEEECCCCCEeccCcCC
Confidence 589999964 47899999999997 699999999999999999984
No 4
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=99.33 E-value=4.1e-13 Score=85.31 Aligned_cols=34 Identities=41% Similarity=0.937 Sum_probs=31.4
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
+.+||.|||++.| .+|++||+|++|++++|+|||
T Consensus 4 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 4 EGPLPDGWEQAMT-QDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp -CCCSSSCCEEEE-TTTEEEEEETTTTEEESSCTT
T ss_pred cCCCCCCcEEEEC-CCCCEEEEECCCCCEeCCCCC
Confidence 4689999999999 679999999999999999998
No 5
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.26 E-value=2.3e-12 Score=82.72 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=32.0
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
..+||.|||++.| .+|++||+|++|++++|+||+
T Consensus 5 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 5 SSGLPEGWEMRFT-VDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CCCCCSSEEEEEC-TTCCEEEEETTTCCEESSCTT
T ss_pred cCCCCcCcEEEEc-CCCCEEEEECCCCcEecCCCC
Confidence 4789999999999 679999999999999999998
No 6
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=99.25 E-value=2.5e-12 Score=80.15 Aligned_cols=33 Identities=39% Similarity=0.899 Sum_probs=31.1
Q ss_pred CCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
.+||.|||++.| .+|++||+|++|++++|++|+
T Consensus 3 ~~LP~GWe~~~d-~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 3 PPLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp SCSCTTEEEEEC-SSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCCEEEEC-CCCCEEEEECCCCCEeeeCcC
Confidence 589999999999 579999999999999999997
No 7
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=99.25 E-value=1.8e-12 Score=83.43 Aligned_cols=34 Identities=24% Similarity=0.667 Sum_probs=31.9
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
+.+||.|||++.|. +|++||+|++|++++|++|+
T Consensus 6 ~~~LP~gWe~~~~~-~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 6 QSFLPPGWEMRIAP-NGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CCSSCTTEEEEECT-TSCEEEEETTTTEEESSCGG
T ss_pred cCCCCCCcEEEEcC-CCCEEEEECCCCCeecCCCC
Confidence 57899999999994 79999999999999999998
No 8
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=99.24 E-value=3.2e-12 Score=85.97 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=36.6
Q ss_pred ccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 53 SVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 53 ~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..+.+.+.+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus 5 ~~~~~~~~~LP~GWe~~~d~-~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 5 SSGLDSELELPAGWEKIEDP-VYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp CCCCCCSSCCCTTEEEEEET-TTEEEEEETTTTEEESSCCCS
T ss_pred ccccCCCCCCCcCceEEEcC-CCCEEEEeCCCCCEecCCCCC
Confidence 34567789999999999995 699999999999999999994
No 9
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=99.24 E-value=2.8e-12 Score=86.21 Aligned_cols=38 Identities=29% Similarity=0.638 Sum_probs=34.3
Q ss_pred cccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 56 LQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 56 L~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+...+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus 6 ~~~~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 6 SNDLGPLPPGWEERTH-TDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp SSCCSSCSTTEEEEEC-TTSCEEEEETTTTEEESSCTTT
T ss_pred cccCCCCCcCcEEEEc-CCCCEEEEECCCCCEEeeCCCC
Confidence 3455789999999999 6799999999999999999994
No 10
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.24 E-value=3.2e-12 Score=81.99 Aligned_cols=34 Identities=29% Similarity=0.681 Sum_probs=31.9
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
+.+||.|||++.| .+|++||+|++|++++|++|+
T Consensus 5 ~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 5 SSGLPYGWEEAYT-ADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp SSCCCTTEEEEEC-SSSCEEEEESSSCCEECCCCC
T ss_pred cCCCCCCcEEEEc-CCCCEEEEECCCCcCcCCCCC
Confidence 4689999999999 579999999999999999998
No 11
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=99.24 E-value=2.9e-12 Score=79.35 Aligned_cols=34 Identities=35% Similarity=0.758 Sum_probs=31.6
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
..+||.|||++.|. +|++||+|++|++++|++|+
T Consensus 2 ~~~LP~gWe~~~d~-~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 2 SPGLPSGWEERKDA-KGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp CTTCCTTEEEEECS-SSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCCCEEEECC-CCCEEEEECCCCCEeCcCCC
Confidence 36899999999995 79999999999999999996
No 12
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=99.23 E-value=3.7e-12 Score=80.92 Aligned_cols=35 Identities=37% Similarity=0.826 Sum_probs=32.1
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus 4 ~~~LP~gWe~~~d~-~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 4 MGPLPPGWERRVDN-MGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp SCCCCSSCEEEECT-TSCEEEECSSSCCEECCCCCC
T ss_pred cCCCCCCcEEEEcC-CCCEEEEECCCCCEeccCCCC
Confidence 35899999999995 799999999999999999983
No 13
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=99.23 E-value=3.2e-12 Score=84.58 Aligned_cols=36 Identities=36% Similarity=0.821 Sum_probs=33.1
Q ss_pred cCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 58 IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 58 l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
...+||.|||++.| .+|++||+|++|++++|+||+.
T Consensus 8 ~~~~LP~gWe~~~~-~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 8 ASGPLPEGWEQAIT-PEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp TTSCCCTTCEEEEC-TTSCEEEEETTTTEEECSCCSS
T ss_pred cCCCCCcCceeEEC-CCCCEEEEECCCCCEeCCCCCc
Confidence 35789999999999 6799999999999999999984
No 14
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=99.21 E-value=4.9e-12 Score=82.31 Aligned_cols=35 Identities=26% Similarity=0.623 Sum_probs=32.3
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..+||.|||++.| .+|++||+|++|++++|+||+.
T Consensus 5 ~~~LP~GWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 5 SGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CSCCCSSEEEEEC-SSSCEEEEETTTTEEESSCTTT
T ss_pred cCCCCcCcEEEEC-CCCCEEEEECCCCCEeCCCCCC
Confidence 3589999999999 6799999999999999999994
No 15
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=99.20 E-value=5.1e-12 Score=83.52 Aligned_cols=36 Identities=28% Similarity=0.732 Sum_probs=32.8
Q ss_pred cCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 58 IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 58 l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+.+||.|||++.|. +|++||+|++|++++|+||+.
T Consensus 7 ~~~~LP~gWe~~~~~-~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 7 EEEPLPPRWSMQVAP-NGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CSCCCCTTEEEEECT-TSSEEEEETTTTEEESBCTTT
T ss_pred CCCCCCcCcEEEEcC-CCCEEEEECCCCCEeccCCCC
Confidence 356899999999995 799999999999999999994
No 16
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=99.20 E-value=6.1e-12 Score=78.43 Aligned_cols=34 Identities=26% Similarity=0.725 Sum_probs=31.6
Q ss_pred CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+||.|||++.|. +|++||+|+.|++++|++|+.
T Consensus 2 ~~LP~gW~~~~~~-~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 2 MGLPPGWDEYKTH-NGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CCSCTTEEEEECS-SCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEECC-CCCEEEEECCCCCeeeeCcCC
Confidence 5899999999994 799999999999999999984
No 17
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=99.20 E-value=1e-12 Score=92.73 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=47.8
Q ss_pred CCceeeeccc---ccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 33 RKRKFLSDFS---LLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 33 ~~R~~~~~~~---t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+|.||.||. ++|++|...... .....||.|||++.|. +|++||+|+.|++++|++|+.
T Consensus 11 ~Gr~YY~n~~T~~s~W~~P~~~~~~--~~~~~lp~gW~~~~~~-~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 11 SGRIYYYNTLTKKSTWEKPKELISQ--EELLLRENGWKAAKTA-DGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp TCCEEEEETTTTEEESSCCHHHHHH--HHHHHHHHTCEEEECT-TCCEEEEETTTTEEESSCCCC
T ss_pred CCCeEEEECCCCCEEeecchhhccc--ccccCCCCeEEEEECC-CCCEEEEECCCCCEECCCCCC
Confidence 6899999887 999999543321 1123589999999986 599999999999999999985
No 18
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=99.19 E-value=6.4e-12 Score=81.16 Aligned_cols=34 Identities=41% Similarity=0.938 Sum_probs=31.7
Q ss_pred CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+||.||+++.|. +|++||+|++|++++|++|+.
T Consensus 7 ~~LP~gW~~~~~~-~Gr~YY~n~~T~~t~We~P~~ 40 (43)
T 1ymz_A 7 MPLPPGWERRTDV-EGKVYYFNVRTLTTTWERPTI 40 (43)
T ss_dssp CCCCSSEEEEECT-TSCEEEEETTTTEEESSCCCS
T ss_pred CCCCCCCEEEECC-CCCEEEEECCCCCCcccCCcc
Confidence 5899999999996 799999999999999999983
No 19
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=99.19 E-value=9e-12 Score=84.90 Aligned_cols=37 Identities=19% Similarity=0.536 Sum_probs=33.7
Q ss_pred ccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 57 QIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 57 ~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
....+||.|||++.| .+|++||+|++|++++|+||+.
T Consensus 14 ~~~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 14 INEGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp TSCSCCCTTEEEEEC-TTSCEEEEETTTCCEESSCCCS
T ss_pred CcCCCCCcCcEEEEc-CCCCEEEEeCCCCcEecCCCCC
Confidence 446789999999999 6799999999999999999994
No 20
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8.5e-12 Score=80.96 Aligned_cols=35 Identities=31% Similarity=0.811 Sum_probs=32.5
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus 5 ~~~LP~GWe~~~d~-~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 5 SSGLPPGWEQRVDQ-HGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp CCSCCTTEEEEECT-TSCEEEEETTTCCEESSCSSS
T ss_pred CCCCCCCceEEECC-CCCEEEEECCCCCEecCCcCC
Confidence 46899999999996 799999999999999999984
No 21
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=99.19 E-value=6.1e-12 Score=83.90 Aligned_cols=35 Identities=23% Similarity=0.590 Sum_probs=31.4
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus 10 ~~~LP~gWe~~~~-~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 10 QGFLPKGWEVRHA-PNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp --CCCTTEEEEEC-TTSCEEEEETTTTEEESSCTTC
T ss_pred CCCCCCCcEEEEC-CCCCEEEEECCCCCEecCCCCC
Confidence 4689999999999 5799999999999999999994
No 22
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=7.5e-12 Score=87.62 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=37.2
Q ss_pred cccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 52 TSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 52 ~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
...+.+.+.+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus 4 g~~~~d~~~~LP~GWE~~~d-~~Gr~YYvnh~tk~T~We~P~~ 45 (60)
T 2yse_A 4 GSSGLDSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPVL 45 (60)
T ss_dssp CSCCCCCCSSCCSSEEEEEC-SSSCEEEEETTTTEEESSCHHH
T ss_pred CccccCCCCCCCCCcEEEEC-CCCCEEEEeCCCCCeeccCCCc
Confidence 34556778999999999999 5699999999999999999994
No 23
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.17 E-value=1.4e-11 Score=85.21 Aligned_cols=42 Identities=26% Similarity=0.565 Sum_probs=36.6
Q ss_pred cccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 52 TSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 52 ~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+.+.+...+||.|||++.|. +|++||+|++|++++|+|||.
T Consensus 5 ~~~~~~~~~~LP~GWe~~~~~-~Gr~Yyinh~tk~TtWe~Pr~ 46 (57)
T 2ysd_A 5 SSGAEDNLGPLPENWEMAYTE-NGEVYFIDHNTKTTSWLDPRC 46 (57)
T ss_dssp SCCCCSCCCSCCSSEEEEECS-SCCEEEEETTTTEEESSCTTT
T ss_pred cccCCCCCCCCCcCcEEEECC-CCCEEEEECCCCcEecCCCCC
Confidence 344556678999999999995 699999999999999999994
No 24
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.15 E-value=2.8e-11 Score=86.05 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=48.0
Q ss_pred CCceeeeccc---ccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 33 RKRKFLSDFS---LLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 33 ~~R~~~~~~~---t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+|.||.|+. ++|++|...... ....++|.+|+++.|. .|++||+|+.|++++|++|++
T Consensus 14 ~G~~YYyN~~T~~s~We~P~~~~~~--~e~~~~~~~W~~~~~~-~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 14 EGYHYYYDLISGASQWEKPEGFQGD--LKKTAVKTVWVEGLSE-DGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp TTEEEEEETTTTEEECSCCSSCSSC--CSSSSCCCSEEEEEET-TTEEEEEETTTTEEESSCCCC
T ss_pred CCCEEEEECCCCCEeecCCCccccc--ccccCCCccEEEEECC-CCCEEEEECcCCCEeccCcCC
Confidence 4789999876 899999643221 1235789999999998 699999999999999999974
No 25
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=99.14 E-value=1.5e-11 Score=82.52 Aligned_cols=35 Identities=31% Similarity=0.736 Sum_probs=32.6
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
+.+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus 9 ~~~LP~gWe~~~~~-~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 9 DLPLPPGWSVDWTM-RGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CCCCCTTEEEEECS-SSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCCceEEECC-CCCEEEEEcCCCCEEecCCCC
Confidence 46899999999996 699999999999999999995
No 26
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.12 E-value=2.6e-11 Score=77.08 Aligned_cols=35 Identities=31% Similarity=0.772 Sum_probs=32.1
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
+.+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus 5 ~~~LP~gW~~~~d~-~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 5 SSGLPPGWQSYLSP-QGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CSSCCTTCEEEECT-TSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCCceEEECC-CCCEEEEECCCCCEeCCCCCC
Confidence 46899999999996 799999999999999999973
No 27
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=99.11 E-value=3.9e-11 Score=81.90 Aligned_cols=35 Identities=20% Similarity=0.548 Sum_probs=32.3
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..+||.|||++.|. +|++||+|++|++++|+||+.
T Consensus 9 ~~~LP~GWe~~~~~-~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 9 AGDLPYGWEQETDE-NGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp SSCSCTTEEEEECT-TSCEEEEESSSCCEESSCTTS
T ss_pred CCCCCcCcEEEECC-CCCEEEEeCCCCCEeecCCCC
Confidence 45899999999995 799999999999999999995
No 28
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=99.05 E-value=2e-11 Score=90.08 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=47.5
Q ss_pred CCceeeeccc---ccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 33 RKRKFLSDFS---LLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 33 ~~R~~~~~~~---t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+|.||.||. ++|++|....... ...+||.+|+++.+. +|++||+|+.|++++|++|++
T Consensus 23 ~Gr~YYyN~~T~~s~We~P~~~~~~~--e~~~~~~~W~~~~~~-~Gr~Yy~N~~T~~s~We~P~~ 84 (92)
T 2l5f_A 23 DGRTYYYNTETKQSTWEKPDDLKTPA--EQLLSKCPWKEYKSD-SGKTYYYNSQTKESRWAKPKE 84 (92)
T ss_dssp TSCEEEEETTTTEEESSCSGGGTCHH--HHHHHSCSEEEEECT-TCCEEEEETTTTEEESCCCHH
T ss_pred CCCEEEEECCCCceecccCccccccc--cccccccceEEEECC-CCCEEEEECCCCCeeccCchh
Confidence 7899999887 9999995433210 113578999999885 699999999999999999984
No 29
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=99.05 E-value=7.8e-11 Score=80.52 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=34.4
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCcc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENK 95 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~ 95 (190)
+.+||.||+.+.|..+|++||+|+.|++++|++|.+.
T Consensus 5 ~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 4689999999999989999999999999999999953
No 30
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=99.00 E-value=5.3e-11 Score=92.17 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=41.8
Q ss_pred CcCCceeeecccccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 31 PSRKRKFLSDFSLLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 31 ~~~~R~~~~~~~t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
..++|+||+||.+ +...+||.|||++.|. +|++||+|++|++++|+|||
T Consensus 55 ~~~~lV~~vn~~~-------------d~~~pLP~GWE~r~d~-~Gr~YfIdH~tktTtW~dPR 103 (109)
T 3l4h_A 55 HNRDLVNFINMFA-------------DTRLELPRGWEIKTDQ-QGKSFFVDHNSRATTFIDPR 103 (109)
T ss_dssp TCHHHHHHHHTTC-------------CTTSCCCTTEEEEECT-TCCEEEEETTTTEEESSCSC
T ss_pred CcCCceEEeccCC-------------CCCCCCCCCCeEEECC-CCCEEEEeCCCCCEeeCCCC
Confidence 3457788887664 2367899999999998 69999999999999999999
No 31
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=98.98 E-value=1.9e-10 Score=75.11 Aligned_cols=38 Identities=29% Similarity=0.626 Sum_probs=33.8
Q ss_pred cccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 56 LQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 56 L~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
+..+.+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus 3 ~P~~~~LP~GWe~~~~-~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 3 IPDDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CCSSCCCCTTBCCBCC-SSCCCBEEETTTTEEESSCTTT
T ss_pred CCCCCCCCcCcEEEEc-CCCceEEEEecCCceeecCCCc
Confidence 3345789999999999 6799999999999999999994
No 32
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.98 E-value=1.8e-10 Score=73.98 Aligned_cols=33 Identities=33% Similarity=0.769 Sum_probs=30.5
Q ss_pred CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+||.|||++.|. .| +||+|++|++++|++|+.
T Consensus 2 ~~LP~GWe~~~d~-~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 2 SDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CCSCTTEEEEECS-SC-EEEEETTTTEEESSCCCC
T ss_pred CcCCCCceEEEeC-CC-CEEEecCCCCEeccCCCC
Confidence 4799999999997 69 999999999999999984
No 33
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.93 E-value=3.9e-10 Score=72.66 Aligned_cols=33 Identities=30% Similarity=0.728 Sum_probs=30.5
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
+.+||.|||++.|.. | .||+|++|++++|++|+
T Consensus 6 ~~~LP~GWe~~~~~~-G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 6 SGGLPPGWRKIHDAA-G-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCCTTEEEEEETT-E-EEEEESSSCCEESSCCC
T ss_pred CCCCCCCcEEEEcCC-C-CEEEEcCCCCEeccCCC
Confidence 468999999999987 9 49999999999999996
No 34
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=98.84 E-value=9.5e-10 Score=80.37 Aligned_cols=37 Identities=30% Similarity=0.746 Sum_probs=33.5
Q ss_pred ccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 57 QIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 57 ~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
+...+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus 8 ~~~~~LP~gWe~~~~-~~Gr~Yy~n~~t~~t~W~~P~~ 44 (88)
T 1tk7_A 8 DALGPLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDPRT 44 (88)
T ss_dssp STTSSSSSSCCEEEE-TTTEEEEEETTTTEEEEESCCC
T ss_pred CccCCCCCCcEEEEC-CCCCEEEEECCCCCeEeecccc
Confidence 445789999999999 5699999999999999999995
No 35
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.79 E-value=8.1e-10 Score=74.94 Aligned_cols=35 Identities=31% Similarity=0.796 Sum_probs=33.0
Q ss_pred CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..||.||+.+.|..+|++||+|..|++++|++|+.
T Consensus 9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~ 43 (52)
T 2jx8_A 9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVL 43 (52)
T ss_dssp HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCC
Confidence 45999999999999999999999999999999994
No 36
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=98.78 E-value=2.5e-09 Score=78.41 Aligned_cols=36 Identities=19% Similarity=0.513 Sum_probs=32.9
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCcc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENK 95 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~ 95 (190)
+.+||.|||++.|. +|++||+|++|++++|++|+..
T Consensus 7 ~~~LP~gWe~~~~~-~Gr~YY~n~~t~~t~W~~P~~~ 42 (90)
T 2kxq_A 7 PPDLPEGYEQRTTQ-QGQVYFLHTQTGVSTWHDPRVP 42 (90)
T ss_dssp CCSCCSSCEEEEET-TTEEEEEETTTTEEESSCSSSC
T ss_pred CCCCCCCcEEEECC-CCCEEEEECCCCeEeeeccccc
Confidence 46899999999995 6999999999999999999953
No 37
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.75 E-value=4.1e-09 Score=73.19 Aligned_cols=37 Identities=30% Similarity=0.718 Sum_probs=33.7
Q ss_pred cccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 56 LQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 56 L~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
+..+.+||.|||++.|. +| +||+|+.|++++|++|..
T Consensus 14 ~~~~~~LPpGW~~~~D~-sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 14 FETDSDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp TCSCSCCCTTEEEEEET-TE-EEEEETTTCCEESSCCCC
T ss_pred ccCCCCCCCCCeEeecC-CC-CEEEEcCCCCCccCCCCC
Confidence 45678899999999999 79 999999999999999974
No 38
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=98.64 E-value=9.7e-09 Score=82.67 Aligned_cols=35 Identities=37% Similarity=0.918 Sum_probs=30.5
Q ss_pred CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+||.|||.+.|..+|++||+|+.|++++|++|+.
T Consensus 8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~ 42 (166)
T 3tc5_A 8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSG 42 (166)
T ss_dssp --CCTTEEEEECTTTCCEEEEETTTCCEESSCC--
T ss_pred CCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCC
Confidence 68999999999988899999999999999999994
No 39
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.55 E-value=4.1e-08 Score=63.17 Aligned_cols=35 Identities=20% Similarity=0.602 Sum_probs=31.3
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..|+|.+|+++.+. .|++||+|..|++++|++|.+
T Consensus 5 ~~~~~~~W~e~~~~-~G~~YYyN~~T~eS~We~P~~ 39 (40)
T 2ysi_A 5 SSGTEEIWVENKTP-DGKVYYYNARTRESAWTKPDG 39 (40)
T ss_dssp CCCCCCSEEEEECT-TSCEEEEETTTCCEESSCCSC
T ss_pred cCCCCCCCEEEECC-CCCEEEEECCCCCEEeCCCCC
Confidence 46889999999865 699999999999999999973
No 40
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.52 E-value=3e-08 Score=73.01 Aligned_cols=35 Identities=23% Similarity=0.639 Sum_probs=32.6
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..+||.+|+++.|. +|++||+|+.|++++|++|.+
T Consensus 9 ~~~lp~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~ 43 (92)
T 2l5f_A 9 ASGAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDD 43 (92)
T ss_dssp TTBTTTTEEEEECT-TSCEEEEETTTTEEESSCSGG
T ss_pred CCCCCCCcEEEEcC-CCCEEEEECCCCceecccCcc
Confidence 46799999999998 799999999999999999995
No 41
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.44 E-value=6.3e-08 Score=57.95 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=25.3
Q ss_pred ccchhcccCCCcceEEeecCCCCccccCC
Q 029636 64 LDWERCLDLQSGRMYYFNRKSSKKSWSLP 92 (190)
Q Consensus 64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dP 92 (190)
.||| .|..+|+.||+|..|++++|++|
T Consensus 1 ~gWe--~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE--IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE--EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe--EECCCCCeEEEECCCCCEeccCC
Confidence 4799 89999999999999999999987
No 42
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.38 E-value=9.3e-08 Score=61.68 Aligned_cols=33 Identities=24% Similarity=0.676 Sum_probs=26.7
Q ss_pred CCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
.++|.+|+++.+. .|++||+|..|++++|++|.
T Consensus 8 ~~~~~~W~e~~~~-~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 8 GSAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp ----CCEEEEEET-TTEEEEEETTTTEEEESCC-
T ss_pred CCCCCCcEEEECC-CCCEEEEECCCCCEEeCCCC
Confidence 3568899999987 69999999999999999996
No 43
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.33 E-value=2.4e-07 Score=58.35 Aligned_cols=33 Identities=21% Similarity=0.709 Sum_probs=29.4
Q ss_pred CCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 61 PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
+...+|+++.+.. |++||+|..|++++|++|.+
T Consensus 3 ~~~~~W~e~~~~~-G~~YYyN~~T~es~We~P~~ 35 (37)
T 1e0l_A 3 TAVSEWTEYKTAD-GKTYYYNNRTLESTWEKPQE 35 (37)
T ss_dssp SSSCSCEEEECTT-SCEEEEETTTTEEESSCCSS
T ss_pred CCCCCeEEEECCC-CCEEEEECCCCCEEecCCCc
Confidence 4556899999987 99999999999999999984
No 44
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=98.32 E-value=1.2e-07 Score=81.90 Aligned_cols=34 Identities=24% Similarity=0.610 Sum_probs=32.1
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
..|||.|||++.+. +|++||+||+|++++|++|+
T Consensus 9 ~~~l~~~we~~~~~-~~~~y~~~h~~~tt~w~~p~ 42 (261)
T 1eg3_A 9 STSVQGPWERAISP-NKVPYYINHETQTTCWDHPK 42 (261)
T ss_dssp HTTCCTTEEEEECT-TSCEEEEETTTTEEESSCHH
T ss_pred CCCCCCCcceeECC-CCCeEeecCCcccccCCCCc
Confidence 48999999999996 59999999999999999999
No 45
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.5e-07 Score=83.15 Aligned_cols=36 Identities=28% Similarity=0.680 Sum_probs=32.9
Q ss_pred CCCCCccchhcccCCCcceEEeecCCCCccccCCCcc
Q 029636 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENK 95 (190)
Q Consensus 59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~ 95 (190)
..|||.|||++.|. +|++||+||+|++++|+|||..
T Consensus 6 ~~~lP~gWe~~~~~-~g~~y~i~h~~~~t~w~~Pr~~ 41 (429)
T 3olm_A 6 LGPLPSGWEMRLTN-TARVYFVDHNTKTTTWDDPRLP 41 (429)
T ss_dssp CCCCCTTCCCCCSS-CCCCCEEETTTTEEESSCTTSC
T ss_pred CCCCCCCceeEECC-CCCeEEEeCCCcceeccCCCCC
Confidence 46899999999995 7999999999999999999953
No 46
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.11 E-value=6.9e-07 Score=62.67 Aligned_cols=30 Identities=37% Similarity=0.871 Sum_probs=27.9
Q ss_pred ccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 64 LDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
+||+++.|. +|++||+|++|++++|++|++
T Consensus 2 ~~W~~~~~~-~Gr~YY~n~~T~~s~W~~P~~ 31 (75)
T 1o6w_A 2 SIWKEAKDA-SGRIYYYNTLTKKSTWEKPKE 31 (75)
T ss_dssp CCEEEEECT-TCCEEEEETTTTEEESSCCHH
T ss_pred CCCeEEECC-CCCeEEEECCCCCEEeecchh
Confidence 479999998 699999999999999999984
No 47
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=97.95 E-value=2.8e-06 Score=60.08 Aligned_cols=30 Identities=27% Similarity=0.633 Sum_probs=27.9
Q ss_pred ccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 64 LDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
.+|+++.|.. |++||+|+.|++++|++|++
T Consensus 5 ~~W~e~~~~~-G~~YYyN~~T~~s~We~P~~ 34 (75)
T 2jxw_A 5 GRWVEGITSE-GYHYYYDLISGASQWEKPEG 34 (75)
T ss_dssp CCEEEEEETT-TEEEEEETTTTEEECSCCSS
T ss_pred CCcEEEECCC-CCEEEEECCCCCEeecCCCc
Confidence 4799999986 99999999999999999984
No 48
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=97.51 E-value=4.9e-05 Score=60.82 Aligned_cols=35 Identities=23% Similarity=0.615 Sum_probs=32.9
Q ss_pred CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94 (190)
Q Consensus 60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~ 94 (190)
..||.|||.+++..+|+.||+|..|.+.+|+.|..
T Consensus 6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 56999999999999999999999999999999873
No 49
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.48 E-value=6.7e-05 Score=50.48 Aligned_cols=28 Identities=29% Similarity=0.725 Sum_probs=26.3
Q ss_pred cchhcccCCCcceEEeecCCCCccccCCC
Q 029636 65 DWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 65 gWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
.|.++.+.. |+.||+|..|++++|+.|.
T Consensus 8 ~W~e~~s~~-G~~YYyN~~T~eS~WekP~ 35 (50)
T 2dk1_A 8 RWVEGITSE-GYHYYYDLISGASQWEKPE 35 (50)
T ss_dssp CEEECCCST-TCCCEEESSSCCEESSCCT
T ss_pred CeEEEECCC-CCEEEEECCCCCEEeeCCh
Confidence 599999885 9999999999999999997
No 50
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.30 E-value=0.0016 Score=47.25 Aligned_cols=35 Identities=20% Similarity=0.574 Sum_probs=28.6
Q ss_pred CCCc-cchhcccCCCcceEEeecCCCCccccCCCccc
Q 029636 61 PLPL-DWERCLDLQSGRMYYFNRKSSKKSWSLPENKQ 96 (190)
Q Consensus 61 PLPs-gWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~~ 96 (190)
|+|- .|...-.. .||+||+|..|+++.|+.|.+-+
T Consensus 16 pipgt~W~~v~T~-dGR~fyyN~~Tk~S~WekP~eLk 51 (73)
T 2dk7_A 16 PIPGTPWCVVWTG-DERVFFYNPTTRLSMWDRPDDLI 51 (73)
T ss_dssp ECSSSSCEEEEES-SSCEEEEETTTTEECSSCCTTTT
T ss_pred CCCCCCcEEEECC-CCCEEEecCcccceeccCChHhc
Confidence 4443 59887765 49999999999999999999643
No 51
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=96.13 E-value=0.0031 Score=43.12 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=23.3
Q ss_pred cCCceeeeccc---ccccCCCcccccccccCCCCCcc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQTSVDLQIKDPLPLD 65 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~~iEL~l~~PLPsg 65 (190)
..+|.||.||. |+|++|+.... ...|||.|
T Consensus 25 ~~Gr~Yyinh~tk~TtWe~Pr~~~~----~~~plp~g 57 (57)
T 2ysd_A 25 ENGEVYFIDHNTKTTSWLDPRCLNK----QQSGPSSG 57 (57)
T ss_dssp SSCCEEEEETTTTEEESSCTTTCSS----CCCSCCCC
T ss_pred CCCCEEEEECCCCcEecCCCCCccc----cCCCCCCC
Confidence 47999999998 89999976553 23588875
No 52
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=94.32 E-value=0.021 Score=36.57 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.4
Q ss_pred cCCceeeeccc---ccccCCCccc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQT 52 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~ 52 (190)
..+|.||.||. |+|++|+...
T Consensus 18 ~~G~~Yy~nh~t~~ttW~~Pr~~~ 41 (42)
T 2djy_A 18 ATGRVYFVDHNNRTTQFTDPRLSA 41 (42)
T ss_dssp SSSCEEEEETTTTEEESSCTTTSC
T ss_pred CCCCEEEEECCCCCEeCCCCCCCC
Confidence 47899999997 9999996543
No 53
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=94.07 E-value=0.024 Score=36.85 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.5
Q ss_pred cCCceeeeccc---ccccCCCccc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQT 52 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~ 52 (190)
..+|.||.||. |+|++|...+
T Consensus 21 ~~Gr~Yyinh~t~~TtW~~Pr~~~ 44 (46)
T 2ez5_W 21 PNGRTFFIDHASRRTTWIDPRNGR 44 (46)
T ss_dssp TTSSEEEEETTTTEEESBCTTTCC
T ss_pred CCCCEEEEECCCCCEeccCCCCCC
Confidence 47899999998 9999996643
No 54
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=93.87 E-value=0.026 Score=37.45 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=16.8
Q ss_pred cCCceeeeccc---ccccCCCcc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQ 51 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~ 51 (190)
..+|.||+||. |+|++|...
T Consensus 24 ~~Gr~YYvnh~t~~T~We~P~~~ 46 (49)
T 2zaj_A 24 PVYGIYYVDHINRKTQYENPSGP 46 (49)
T ss_dssp TTTEEEEEETTTTEEESSCCCSS
T ss_pred CCCCEEEEeCCCCCEecCCCCCC
Confidence 46899999997 999999654
No 55
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=93.80 E-value=0.024 Score=35.23 Aligned_cols=18 Identities=6% Similarity=0.078 Sum_probs=15.7
Q ss_pred cCCceeeeccc---ccccCCC
Q 029636 32 SRKRKFLSDFS---LLKTEPA 49 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~ 49 (190)
..+|.||.||. |+|++|+
T Consensus 17 ~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 17 QDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp TTTEEEEEETTTTEEESSCTT
T ss_pred CCCCEEEEECCCCCEeCCCCC
Confidence 46899999997 9999995
No 56
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=93.80 E-value=0.026 Score=35.54 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=16.3
Q ss_pred cCCceeeeccc---ccccCCCc
Q 029636 32 SRKRKFLSDFS---LLKTEPAI 50 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~ 50 (190)
..+|.||.||. |+|++|+.
T Consensus 18 ~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 18 VDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp TTCCEEEEETTTCCEESSCTTT
T ss_pred CCCCEEEEECCCCcEecCCCCC
Confidence 47899999998 99999964
No 57
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=93.76 E-value=0.027 Score=35.37 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=16.0
Q ss_pred cCCceeeeccc---ccccCCC
Q 029636 32 SRKRKFLSDFS---LLKTEPA 49 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~ 49 (190)
..+|.||.||. |+|++|.
T Consensus 18 ~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 18 ADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp SSSCEEEEESSSCCEECCCCC
T ss_pred CCCCEEEEECCCCcCcCCCCC
Confidence 57999999998 9999995
No 58
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=93.70 E-value=0.028 Score=36.80 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.0
Q ss_pred cCCceeeeccc---ccccCCCccc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQT 52 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~ 52 (190)
..+|.||.||. |+|++|...+
T Consensus 23 ~~G~~Yy~nh~T~~ttWe~Pr~~~ 46 (49)
T 2kpz_A 23 PNGRPFFIDHNTKTTTWEDPRLKI 46 (49)
T ss_dssp TTSCEEEEETTTTEEESSCTTCC-
T ss_pred CCCCEEEEECCCCCEecCCCCCCC
Confidence 46899999998 9999996654
No 59
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.69 E-value=0.03 Score=35.60 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=16.8
Q ss_pred cCCceeeeccc---ccccCCCcc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQ 51 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~ 51 (190)
..+|.||.||. |+|++|...
T Consensus 18 ~~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 18 QHGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp TTSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCEEEEECCCCCEecCCcCCC
Confidence 37899999997 999999654
No 60
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=93.62 E-value=0.045 Score=36.83 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=19.6
Q ss_pred cCCceeeeccc---ccccCCCcccccc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQTSVD 55 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~~iE 55 (190)
..+|.||.||. |+|++|.....++
T Consensus 22 ~~G~~Yyinh~tk~TtwedPr~~~~~~ 48 (54)
T 1wmv_A 22 ENGQVFFVDHINKRTTYLDPRLAFTVD 48 (54)
T ss_dssp TTSCEEEEESSSCCEESSCTTSSCCCC
T ss_pred CCCCEEEEeCCCCCEeecCCCCccccc
Confidence 36899999998 9999997766554
No 61
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=93.56 E-value=0.032 Score=33.95 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=15.7
Q ss_pred cCCceeeeccc---ccccCCC
Q 029636 32 SRKRKFLSDFS---LLKTEPA 49 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~ 49 (190)
..+|.||.||. |+|++|.
T Consensus 15 ~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 15 NLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp SSSCEEEEETTTCCEESSCSC
T ss_pred CCCCEEEEECCCCCEeeeCcC
Confidence 47899999988 9999995
No 62
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=93.55 E-value=0.034 Score=36.74 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.9
Q ss_pred cCCceeeeccc---ccccCCCcc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQ 51 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~ 51 (190)
..+|.||.||. |+|++|...
T Consensus 22 ~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 22 TDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp TTSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCEEEEECCCCCEEeeCCCCC
Confidence 56899999998 899999643
No 63
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=93.40 E-value=0.037 Score=34.37 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=16.1
Q ss_pred cCCceeeeccc---ccccCCCc
Q 029636 32 SRKRKFLSDFS---LLKTEPAI 50 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~ 50 (190)
..+|.||.||. |+|++|..
T Consensus 17 ~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 17 NMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp TTSCEEEECSSSCCEECCCCCC
T ss_pred CCCCEEEEECCCCCEeccCCCC
Confidence 37899999988 89999953
No 64
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=93.32 E-value=0.036 Score=37.22 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=17.1
Q ss_pred cCCceeeeccc---ccccCCCcc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQ 51 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~ 51 (190)
..+|.||.||. |+|++|+..
T Consensus 29 ~~Gr~Yyinh~tk~TtW~dPr~~ 51 (53)
T 2jmf_A 29 AAGERFFVDHNTRRTTFEDPRPG 51 (53)
T ss_dssp TTSCEEEEETTTCCEESSCCCSS
T ss_pred CCCCEEEEeCCCCcEecCCCCCC
Confidence 47899999998 999999654
No 65
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=93.04 E-value=0.042 Score=33.10 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=15.4
Q ss_pred cCCceeeeccc---ccccCCC
Q 029636 32 SRKRKFLSDFS---LLKTEPA 49 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~ 49 (190)
..+|.||.||. |+|++|.
T Consensus 15 ~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 15 AKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp SSSCEEEEETTTTEEESSCCC
T ss_pred CCCCEEEEECCCCCEeCcCCC
Confidence 36899999987 9999994
No 66
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=92.88 E-value=0.046 Score=36.10 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.9
Q ss_pred cCCceeeeccc---ccccCCCcc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQ 51 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~ 51 (190)
..+|.||.||. |+|++|...
T Consensus 22 ~~Gr~Yy~nh~t~~T~W~~P~~~ 44 (49)
T 2ysb_A 22 MRGRKYYIDHNTNTTHWSHPLES 44 (49)
T ss_dssp SSSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCEEEEEcCCCCEEecCCCCC
Confidence 47899999998 999999543
No 67
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.85 E-value=0.045 Score=36.15 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=16.2
Q ss_pred CCceeeeccc---ccccCCCcc
Q 029636 33 RKRKFLSDFS---LLKTEPAIQ 51 (190)
Q Consensus 33 ~~R~~~~~~~---t~W~~P~~~ 51 (190)
.+|.||+||. |+|++|...
T Consensus 25 ~g~~YYvnh~t~~T~We~P~~~ 46 (49)
T 2dwv_A 25 EFGTYYVDHTNKRAQYRHPSGP 46 (49)
T ss_dssp TTEEEEEETTTTEEESSCCCCC
T ss_pred CCCEEEEECCCCCEeccCcCCC
Confidence 6789999998 999999653
No 68
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=92.83 E-value=0.037 Score=34.86 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=16.0
Q ss_pred cCCceeeeccc---ccccCCCc
Q 029636 32 SRKRKFLSDFS---LLKTEPAI 50 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~ 50 (190)
..+|.||.||. |+|++|+.
T Consensus 19 ~~G~~Yy~n~~t~~t~We~Pr~ 40 (41)
T 1wr7_A 19 PNGRPFFIDHNTKTTTWEDPRL 40 (41)
T ss_dssp TTSCEEEEETTTTEEESSCGGG
T ss_pred CCCCEEEEECCCCCeecCCCCC
Confidence 36899999998 99999953
No 69
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=92.79 E-value=0.052 Score=35.28 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=17.1
Q ss_pred cCCceeeeccc---ccccCCCcc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQ 51 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~ 51 (190)
..+|.||.||. |+|++|...
T Consensus 22 ~~G~~Yyinh~t~~TtWe~Pr~~ 44 (46)
T 2l4j_A 22 PEGEIYYINHKNKTTSWLDPRLE 44 (46)
T ss_dssp TTSCEEEEETTTTEEECSCCSSC
T ss_pred CCCCEEEEECCCCCEeCCCCCcC
Confidence 57899999998 999999653
No 70
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.76 E-value=0.023 Score=39.33 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=20.0
Q ss_pred cCCceeeeccc---ccccCCCccccccccc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQTSVDLQI 58 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~~iEL~l 58 (190)
..+|.||+||. |+|++|...+.....+
T Consensus 24 ~~Gr~YYvnh~tk~T~We~P~~~~~~~~~~ 53 (60)
T 2yse_A 24 PVYGIYYVDHINRKTQYENPVLEAKRKKQL 53 (60)
T ss_dssp SSSCEEEEETTTTEEESSCHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCeeccCCCchhhhcccc
Confidence 46899999998 9999996654433333
No 71
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=92.42 E-value=0.061 Score=32.62 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=15.9
Q ss_pred cCCceeeeccc---ccccCCCc
Q 029636 32 SRKRKFLSDFS---LLKTEPAI 50 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~ 50 (190)
..+|.||.||. ++|++|..
T Consensus 14 ~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 14 HNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp SSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCEEEEECCCCCeeeeCcCC
Confidence 36899999887 99999964
No 72
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=92.23 E-value=0.052 Score=36.57 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=17.9
Q ss_pred CcCCceeeeccc---ccccCCCccc
Q 029636 31 PSRKRKFLSDFS---LLKTEPAIQT 52 (190)
Q Consensus 31 ~~~~R~~~~~~~---t~W~~P~~~~ 52 (190)
+..+|.||.|+. ++|++|....
T Consensus 18 ~~~Gr~YY~N~~T~~sqWe~P~~~~ 42 (54)
T 2jv4_A 18 NSKNLPYYFNPATRESRWEPPADTD 42 (54)
T ss_dssp SSSSCEEEEETTTTEEESSCCTTSC
T ss_pred CCCCCEEEEECCCCcEEecCCCCcc
Confidence 457999999888 9999996543
No 73
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=91.64 E-value=0.083 Score=32.76 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=15.9
Q ss_pred cCCceeeeccc---ccccCCCc
Q 029636 32 SRKRKFLSDFS---LLKTEPAI 50 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~ 50 (190)
..+|.||.||. ++|++|..
T Consensus 18 ~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 18 PQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp TTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCEEEEECCCCCEeCCCCCC
Confidence 36899999987 99999953
No 74
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=90.84 E-value=0.11 Score=32.70 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=15.5
Q ss_pred CCceeeeccc---ccccCCCc
Q 029636 33 RKRKFLSDFS---LLKTEPAI 50 (190)
Q Consensus 33 ~~R~~~~~~~---t~W~~P~~ 50 (190)
.+|.||.||. |+|++|..
T Consensus 20 ~Gr~YY~n~~T~~t~We~P~~ 40 (43)
T 1ymz_A 20 EGKVYYFNVRTLTTTWERPTI 40 (43)
T ss_dssp TSCEEEEETTTTEEESSCCCS
T ss_pred CCCEEEEECCCCCCcccCCcc
Confidence 6899999888 99999954
No 75
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=90.28 E-value=0.13 Score=32.79 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=17.1
Q ss_pred cCCceeeeccc---ccccCCCccc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQT 52 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~ 52 (190)
..+|.||.||. |+|++|+...
T Consensus 19 ~~gr~y~~n~~t~~t~W~dPr~~~ 42 (46)
T 1jmq_A 19 SSGQRYFKNHIDQTTTWQDPRKAM 42 (46)
T ss_dssp SSCCCBEEETTTTEEESSCTTTSS
T ss_pred CCCceEEEEecCCceeecCCCchh
Confidence 46889999888 7999997654
No 76
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=88.82 E-value=0.25 Score=37.25 Aligned_cols=46 Identities=28% Similarity=0.519 Sum_probs=21.0
Q ss_pred CCCcCCceeeecccccccCCCcccccccccCCCCCccchhcccC-CC------cceEEeecCCCCc
Q 029636 29 DNPSRKRKFLSDFSLLKTEPAIQTSVDLQIKDPLPLDWERCLDL-QS------GRMYYFNRKSSKK 87 (190)
Q Consensus 29 ~~~~~~R~~~~~~~t~W~~P~~~~~iEL~l~~PLPsgWEq~LDl-kS------G~iYY~N~~T~~s 87 (190)
+++++.|.+..|+. + +-.+.+||.||+..+=+ ++ ..|||+.. +|++
T Consensus 3 ~~~~~rr~~i~~~~-----~-------~~~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~Gkk 55 (97)
T 3c2i_A 3 ASPKQRRSIIRDRG-----P-------MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKA 55 (97)
T ss_dssp ------------CC-----C-------CCCCTTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCE
T ss_pred CCCcccceeEecCC-----c-------ccCCCCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCE
Confidence 45677777766422 2 11346799999875442 22 37899987 6765
No 77
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=85.52 E-value=0.32 Score=32.41 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.9
Q ss_pred CcCCceeeeccc---ccccCCCcc
Q 029636 31 PSRKRKFLSDFS---LLKTEPAIQ 51 (190)
Q Consensus 31 ~~~~R~~~~~~~---t~W~~P~~~ 51 (190)
...+|.||.|+. ++|+.|...
T Consensus 21 ~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 21 RRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp TTTTEEEEEETTTTEEESSCCCCT
T ss_pred cccCCEEEEECCCCCEEeCCCCCC
Confidence 357899999888 899999544
No 78
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=85.50 E-value=0.37 Score=37.03 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=17.0
Q ss_pred cCCceeeeccc---ccccCCCcc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQ 51 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~ 51 (190)
..+|.||+||. |+|++|+..
T Consensus 83 ~~Gr~YfIdH~tktTtW~dPRl~ 105 (109)
T 3l4h_A 83 QQGKSFFVDHNSRATTFIDPRIP 105 (109)
T ss_dssp TTCCEEEEETTTTEEESSCSCCS
T ss_pred CCCCEEEEeCCCCCEeeCCCCcc
Confidence 47999999998 999999543
No 79
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=84.44 E-value=0.41 Score=34.20 Aligned_cols=21 Identities=38% Similarity=0.882 Sum_probs=17.8
Q ss_pred eeCccceeeeeecCCCCCCCCCCcc
Q 029636 137 LACMNCHLLVILSKSSPSCPNCKFV 161 (190)
Q Consensus 137 ~gC~~Clmyvm~~k~~p~CP~Ck~~ 161 (190)
.+|.+|+..| ....||+|.+.
T Consensus 12 ~AC~~C~~~~----~~~~CPnC~s~ 32 (69)
T 1ryq_A 12 KACRHCHYIT----SEDRCPVCGSR 32 (69)
T ss_dssp EEETTTCBEE----SSSSCTTTCCC
T ss_pred hhHHhCCccc----cCCcCCCccCC
Confidence 5899999955 77899999865
No 80
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=83.30 E-value=0.44 Score=35.07 Aligned_cols=29 Identities=31% Similarity=0.704 Sum_probs=19.0
Q ss_pred CCCCeEEeeCccceeeeeecCCCCCCCCCCccc
Q 029636 130 ASNNMVALACMNCHLLVILSKSSPSCPNCKFVH 162 (190)
Q Consensus 130 ~~~~mv~~gC~~Clmyvm~~k~~p~CP~Ck~~v 162 (190)
-+..|..-+|.+|...+ . ...||+|.+.-
T Consensus 17 ~~~~m~~rAC~~C~~v~--~--~d~CPnCgs~~ 45 (81)
T 3p8b_A 17 RGSHMSEKACRHCHYIT--S--EDRCPVCGSRD 45 (81)
T ss_dssp -----CCEEETTTCBEE--S--SSSCTTTCCCC
T ss_pred CCcchhHHHHhhCCCcc--C--CCCCCCCCCCc
Confidence 45678888999999875 2 23799999854
No 81
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=82.88 E-value=0.5 Score=37.54 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=15.9
Q ss_pred CcCCceeeeccc---ccccCCCcccc
Q 029636 31 PSRKRKFLSDFS---LLKTEPAIQTS 53 (190)
Q Consensus 31 ~~~~R~~~~~~~---t~W~~P~~~~~ 53 (190)
+..+|.||.||. |+|++|.....
T Consensus 20 ~~~g~~yy~n~~t~~t~We~P~~~~~ 45 (166)
T 3tc5_A 20 RSSGRVYYFNHITNASQWERPSGNSS 45 (166)
T ss_dssp TTTCCEEEEETTTCCEESSCC-----
T ss_pred CCCCCEEEEECCCCCEEecCCCCCcc
Confidence 457999999987 99999965543
No 82
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=80.51 E-value=0.75 Score=28.89 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=12.7
Q ss_pred eeeeccc---ccccCCCc
Q 029636 36 KFLSDFS---LLKTEPAI 50 (190)
Q Consensus 36 ~~~~~~~---t~W~~P~~ 50 (190)
.||.||. |||++|..
T Consensus 17 ~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 17 TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp EEEEETTTTEEESSCCCC
T ss_pred CEEEecCCCCEeccCCCC
Confidence 8888886 99999954
No 83
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=79.07 E-value=1.7 Score=34.46 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=19.7
Q ss_pred cCCCCCccchhcccC-CCc------ceEEeecCCCCc
Q 029636 58 IKDPLPLDWERCLDL-QSG------RMYYFNRKSSKK 87 (190)
Q Consensus 58 l~~PLPsgWEq~LDl-kSG------~iYY~N~~T~~s 87 (190)
...+||.||+.-+=+ ++| .|||+... |++
T Consensus 34 ~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~-GKk 69 (133)
T 1ub1_A 34 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ-GKA 69 (133)
T ss_dssp CCCCBTTBCEEEEEECCCSSSCCSEEEEEECTT-SCE
T ss_pred CCCCCCCCCEEEEEEecCCCCCCceeEEEECCC-CCe
Confidence 357899999775442 333 78999874 554
No 84
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=77.46 E-value=1.8 Score=31.76 Aligned_cols=37 Identities=32% Similarity=0.506 Sum_probs=30.4
Q ss_pred cccCCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636 56 LQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93 (190)
Q Consensus 56 L~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr 93 (190)
++.-.+||+||-+- .-.||-.-|+...|+.-||.+|-
T Consensus 23 ~~~~~~LPeGW~~v-~H~SGmP~YlH~~trV~T~SrPY 59 (79)
T 3le4_A 23 RPPTEPLPDGWIMT-FHNSGVPVYLHRESRVVTWSRPY 59 (79)
T ss_dssp -CCCCCCCTTEEEE-ECTTSSEEEEETTTTEEESSCCC
T ss_pred CCcCCcCCCccEEE-EecCCceEEEeccceEEeccCCe
Confidence 44458999999764 45789999999999999999987
No 85
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=74.86 E-value=1.2 Score=40.39 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=19.1
Q ss_pred cCCceeeeccc---ccccCCCccccc
Q 029636 32 SRKRKFLSDFS---LLKTEPAIQTSV 54 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~~~~i 54 (190)
..+|+||+||. |+|++|+....+
T Consensus 19 ~~g~~y~i~h~~~~t~w~~Pr~~~~~ 44 (429)
T 3olm_A 19 NTARVYFVDHNTKTTTWDDPRLPSSL 44 (429)
T ss_dssp SCCCCCEEETTTTEEESSCTTSCCCC
T ss_pred CCCCeEEEeCCCcceeccCCCCCccc
Confidence 47899999998 999999776543
No 86
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=74.53 E-value=1.7 Score=30.78 Aligned_cols=27 Identities=41% Similarity=0.795 Sum_probs=18.9
Q ss_pred CCCCccchhcccC-CCc------ceEEeecCCCCc
Q 029636 60 DPLPLDWERCLDL-QSG------RMYYFNRKSSKK 87 (190)
Q Consensus 60 ~PLPsgWEq~LDl-kSG------~iYY~N~~T~~s 87 (190)
.+||.||+..+-+ ++| .|||+.. +|++
T Consensus 11 p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr 44 (72)
T 2ky8_A 11 PALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKK 44 (72)
T ss_dssp SSSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCE
T ss_pred CCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCE
Confidence 3899999886542 333 6899986 6654
No 87
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=74.16 E-value=1.5 Score=30.77 Aligned_cols=28 Identities=32% Similarity=0.814 Sum_probs=18.5
Q ss_pred CCCCCccchhcccCC-Cc------ceEEeecCCCCc
Q 029636 59 KDPLPLDWERCLDLQ-SG------RMYYFNRKSSKK 87 (190)
Q Consensus 59 ~~PLPsgWEq~LDlk-SG------~iYY~N~~T~~s 87 (190)
+.|||.||+..+=.. +| .|||+... |++
T Consensus 3 ~~plp~GW~R~~~~R~~G~s~gk~DvyY~sP~-Gkk 37 (69)
T 3vxv_A 3 HKPVPCGWERVVKQRLSGKTAGKFDVYFISPQ-GLK 37 (69)
T ss_dssp -CCSCTTCEEEEEECCSSTTTTCEEEEEECTT-SCE
T ss_pred CCcCCCCCEEEEEEeccCCCCCcceEEEEcCC-CCE
Confidence 579999998865442 23 68999644 443
No 88
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=72.59 E-value=1.1 Score=38.46 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=16.6
Q ss_pred cCCceeeeccc---ccccCCCc
Q 029636 32 SRKRKFLSDFS---LLKTEPAI 50 (190)
Q Consensus 32 ~~~R~~~~~~~---t~W~~P~~ 50 (190)
..+|+||+||. |+|++|.-
T Consensus 22 ~~~~~y~~~h~~~tt~w~~p~~ 43 (261)
T 1eg3_A 22 PNKVPYYINHETQTTCWDHPKM 43 (261)
T ss_dssp TTSCEEEEETTTTEEESSCHHH
T ss_pred CCCCeEeecCCcccccCCCCch
Confidence 46899999998 99999953
No 89
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=70.49 E-value=1.1 Score=31.87 Aligned_cols=30 Identities=13% Similarity=0.436 Sum_probs=23.0
Q ss_pred EEeeCccceeeeeecCC--CCCCCCCCcccCCCC
Q 029636 135 VALACMNCHLLVILSKS--SPSCPNCKFVHSLPN 166 (190)
Q Consensus 135 v~~gC~~Clmyvm~~k~--~p~CP~Ck~~v~~~~ 166 (190)
++++|+ |..+..+-.. .-+|| |...+-...
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEECCS
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeeece
Confidence 688999 9988766653 36899 999886543
No 90
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=67.11 E-value=3.1 Score=29.70 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=19.1
Q ss_pred CCCCCccchhcccC-C------CcceEEeecCCCCc
Q 029636 59 KDPLPLDWERCLDL-Q------SGRMYYFNRKSSKK 87 (190)
Q Consensus 59 ~~PLPsgWEq~LDl-k------SG~iYY~N~~T~~s 87 (190)
...||.||+.-+=+ + .+.+||+.. +|++
T Consensus 8 ~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk 42 (75)
T 1d9n_A 8 CPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDR 42 (75)
T ss_dssp CTTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCE
T ss_pred CCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCe
Confidence 36799999864432 2 246899987 6665
No 91
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=66.93 E-value=4.3 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=23.2
Q ss_pred EEeeCccceeeeeecCCCCCCCCCCcccCCCCC
Q 029636 135 VALACMNCHLLVILSKSSPSCPNCKFVHSLPNQ 167 (190)
Q Consensus 135 v~~gC~~Clmyvm~~k~~p~CP~Ck~~v~~~~~ 167 (190)
....|++|-.|-+ ...||.|......+++
T Consensus 5 ~mr~C~~CgvYTL----k~~CP~CG~~T~~~hP 33 (60)
T 2apo_B 5 RMKKCPKCGLYTL----KEICPKCGEKTVIPKP 33 (60)
T ss_dssp CCEECTTTCCEES----SSBCSSSCSBCBCCCC
T ss_pred hceeCCCCCCEec----cccCcCCCCcCCCCCC
Confidence 5678999999998 5669999987766554
No 92
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=66.69 E-value=1.7 Score=29.88 Aligned_cols=21 Identities=33% Similarity=0.861 Sum_probs=15.6
Q ss_pred eeCccceeeeeecCCCCCCCCCCcc
Q 029636 137 LACMNCHLLVILSKSSPSCPNCKFV 161 (190)
Q Consensus 137 ~gC~~Clmyvm~~k~~p~CP~Ck~~ 161 (190)
-+|.+|++.+ .. ..||+|.+.
T Consensus 2 rAC~~C~~v~--~~--~~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLT--ND--EICPICHSP 22 (59)
T ss_dssp EEETTTCBEE--SS--SBCTTTCCB
T ss_pred cccccCCccc--CC--CCCCCCCCC
Confidence 4799999764 22 279999974
No 93
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=52.08 E-value=7.6 Score=28.76 Aligned_cols=29 Identities=21% Similarity=0.467 Sum_probs=23.5
Q ss_pred eEEeeCccceeeeeecCCCC-CCCCCCccc
Q 029636 134 MVALACMNCHLLVILSKSSP-SCPNCKFVH 162 (190)
Q Consensus 134 mv~~gC~~Clmyvm~~k~~p-~CP~Ck~~v 162 (190)
-+..-|..|--.+=+..... +||.|.+..
T Consensus 71 p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp CCEEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred cceEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 46789999988777766667 899999863
No 94
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=50.67 E-value=8.5 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.490 Sum_probs=21.7
Q ss_pred EEeeCccceeeeeecCCCCCCCCCCcccCCCC
Q 029636 135 VALACMNCHLLVILSKSSPSCPNCKFVHSLPN 166 (190)
Q Consensus 135 v~~gC~~Clmyvm~~k~~p~CP~Ck~~v~~~~ 166 (190)
-.--|+.|--|.+ ...||.|......++
T Consensus 4 ~mr~C~~Cg~YTL----k~~CP~CG~~t~~ah 31 (60)
T 2aus_D 4 RIRKCPKCGRYTL----KETCPVCGEKTKVAH 31 (60)
T ss_dssp CCEECTTTCCEES----SSBCTTTCSBCEESS
T ss_pred cceECCCCCCEEc----cccCcCCCCccCCCC
Confidence 4567999999998 566999998765444
No 95
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.60 E-value=2.3 Score=32.05 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=20.1
Q ss_pred eeCccceeeeeecCCCCCCCCCCcccC
Q 029636 137 LACMNCHLLVILSKSSPSCPNCKFVHS 163 (190)
Q Consensus 137 ~gC~~Clmyvm~~k~~p~CP~Ck~~v~ 163 (190)
..|..|++|. ..+.+..||+||...-
T Consensus 44 PvCrpCyEYE-rkeG~q~CpqCktrYk 69 (93)
T 1weo_A 44 PACRPCYEYE-RREGTQNCPQCKTRYK 69 (93)
T ss_dssp CCCHHHHHHH-HHTSCSSCTTTCCCCC
T ss_pred hhhHHHHHHH-HhccCccccccCCccc
Confidence 3577777774 5789999999998764
No 96
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=44.19 E-value=9.8 Score=24.87 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=18.4
Q ss_pred Cccceeeeeec-----CCCCCCCCCCcccCCC
Q 029636 139 CMNCHLLVILS-----KSSPSCPNCKFVHSLP 165 (190)
Q Consensus 139 C~~Clmyvm~~-----k~~p~CP~Ck~~v~~~ 165 (190)
|..|+.-.+-. ....+||.|+..+...
T Consensus 35 C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 35 CRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred HHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 56677655443 2378999999887653
No 97
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.76 E-value=8.2 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=18.2
Q ss_pred Cccceeeeeec----CCCCCCCCCCcccCCC
Q 029636 139 CMNCHLLVILS----KSSPSCPNCKFVHSLP 165 (190)
Q Consensus 139 C~~Clmyvm~~----k~~p~CP~Ck~~v~~~ 165 (190)
|..|+.-.+-. .....||.|+..+...
T Consensus 42 C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 42 CQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred HHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 56676544332 3478999999988754
No 98
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=41.31 E-value=10 Score=29.27 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=22.3
Q ss_pred eEEeeCccceeeeeecC-----------C----------CCCCCCCCccc
Q 029636 134 MVALACMNCHLLVILSK-----------S----------SPSCPNCKFVH 162 (190)
Q Consensus 134 mv~~gC~~Clmyvm~~k-----------~----------~p~CP~Ck~~v 162 (190)
-+.+-|..|-..+=+.. . .-+||+|.+..
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 56889999977766655 4 57899999864
No 99
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=39.71 E-value=12 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.679 Sum_probs=19.9
Q ss_pred CCeEEeeCccceeeeeecCCCC-CCCCCCc
Q 029636 132 NNMVALACMNCHLLVILSKSSP-SCPNCKF 160 (190)
Q Consensus 132 ~~mv~~gC~~Clmyvm~~k~~p-~CP~Ck~ 160 (190)
..|+.-.|+.|-.- .--..-| +||.|+.
T Consensus 151 ~~~~~~~C~~CG~~-~~g~~~p~~CP~C~~ 179 (191)
T 1lko_A 151 EQATKWRCRNCGYV-HEGTGAPELCPACAH 179 (191)
T ss_dssp EEEEEEEETTTCCE-EEEEECCSBCTTTCC
T ss_pred CCCceEEECCCCCE-eeCCCCCCCCCCCcC
Confidence 56889999999743 3332334 9999986
No 100
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=39.62 E-value=11 Score=22.04 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=10.7
Q ss_pred CCCCCCCCcccCC
Q 029636 152 SPSCPNCKFVHSL 164 (190)
Q Consensus 152 ~p~CP~Ck~~v~~ 164 (190)
.++||+|...|-.
T Consensus 3 ~~~C~~C~k~Vy~ 15 (31)
T 1zfo_A 3 NPNCARCGKIVYP 15 (31)
T ss_dssp CCBCSSSCSBCCG
T ss_pred CCcCCccCCEEec
Confidence 4799999998854
No 101
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.63 E-value=16 Score=23.05 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=17.5
Q ss_pred CccceeeeeecCCCCCCCCCCcccCCCCC
Q 029636 139 CMNCHLLVILSKSSPSCPNCKFVHSLPNQ 167 (190)
Q Consensus 139 C~~Clmyvm~~k~~p~CP~Ck~~v~~~~~ 167 (190)
|..|+.- ...+||.|+..+.++.+
T Consensus 29 C~~Ci~~-----~~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 29 CSGCLEA-----SGMQCPICQAPWPLGAD 52 (56)
T ss_dssp BTTTCSS-----SSSSCSSCCSSSSCCSS
T ss_pred cHHHHcc-----CCCCCCcCCcEeecCCc
Confidence 5566544 56799999998877654
No 102
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.14 E-value=15 Score=25.50 Aligned_cols=32 Identities=13% Similarity=0.333 Sum_probs=25.9
Q ss_pred eEEeeCccceeeeeecCCC-CCCCCCCcccCCC
Q 029636 134 MVALACMNCHLLVILSKSS-PSCPNCKFVHSLP 165 (190)
Q Consensus 134 mv~~gC~~Clmyvm~~k~~-p~CP~Ck~~v~~~ 165 (190)
-|.--|.+|..-|-+...+ -+||.|.+-+..-
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRVMYK 51 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCBC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEEEEE
Confidence 4778899999999877644 6999999988653
No 103
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=36.93 E-value=19 Score=25.21 Aligned_cols=31 Identities=19% Similarity=0.479 Sum_probs=24.1
Q ss_pred CeEEeeCccceeeeeecCCC-CCCCCCCcccC
Q 029636 133 NMVALACMNCHLLVILSKSS-PSCPNCKFVHS 163 (190)
Q Consensus 133 ~mv~~gC~~Clmyvm~~k~~-p~CP~Ck~~v~ 163 (190)
.-|.--|..|..-+-+-..+ .+||.|..-+.
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 45667899999998776554 78999999443
No 104
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.55 E-value=17 Score=27.65 Aligned_cols=30 Identities=20% Similarity=0.532 Sum_probs=21.9
Q ss_pred eEEeeCccceeeeeecC--CCCCCCCCCcccCC
Q 029636 134 MVALACMNCHLLVILSK--SSPSCPNCKFVHSL 164 (190)
Q Consensus 134 mv~~gC~~Clmyvm~~k--~~p~CP~Ck~~v~~ 164 (190)
|.-.-|..|-+-+ ..+ ...+||+|++....
T Consensus 65 v~p~~C~~CG~~F-~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 65 IKPAQCRKCGFVF-KAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp ECCCBBTTTCCBC-CCCSSCCSSCSSSCCCCBC
T ss_pred EECcChhhCcCee-cccCCCCCCCcCCCCCccC
Confidence 5557899999887 322 33799999997654
No 105
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.10 E-value=12 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=17.4
Q ss_pred CccceeeeeecCCCCCCCCCCcccCCCCC
Q 029636 139 CMNCHLLVILSKSSPSCPNCKFVHSLPNQ 167 (190)
Q Consensus 139 C~~Clmyvm~~k~~p~CP~Ck~~v~~~~~ 167 (190)
|..|+.-.+ +....||-|+..+.....
T Consensus 41 c~~Ci~~~~--~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 41 HDSCIVPWL--EQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp ETTTTHHHH--TTTCSCTTTCCCCCCSCS
T ss_pred cHHHHHHHH--HcCCcCcCcCCccCCccc
Confidence 344554333 455899999988865444
No 106
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=35.07 E-value=20 Score=26.66 Aligned_cols=30 Identities=27% Similarity=0.642 Sum_probs=20.0
Q ss_pred eEEeeCccc------eeeeeecCCCC-CCCCCCcccCC
Q 029636 134 MVALACMNC------HLLVILSKSSP-SCPNCKFVHSL 164 (190)
Q Consensus 134 mv~~gC~~C------lmyvm~~k~~p-~CP~Ck~~v~~ 164 (190)
--.+||. | .+++.|.+..| +||.|..+.-+
T Consensus 55 ~RiVGC~-~~~D~h~v~W~~l~~g~~~RC~eCG~~fkL 91 (98)
T 1v54_F 55 KRIVGCI-CEEDNSTVIWFWLHKGEAQRCPSCGTHYKL 91 (98)
T ss_dssp EEEEEEC-CSTTCSCCEEEEEESSSCEECTTTCCEEEE
T ss_pred CeEEeec-CCCCCceeEEEEEeCCCceECCCCCeEEEE
Confidence 3456665 4 35666788776 89999876543
No 107
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=34.90 E-value=19 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=24.0
Q ss_pred EEeeCccceeeee-ecCCCCCCCCCCcccCCCC
Q 029636 135 VALACMNCHLLVI-LSKSSPSCPNCKFVHSLPN 166 (190)
Q Consensus 135 v~~gC~~Clmyvm-~~k~~p~CP~Ck~~v~~~~ 166 (190)
....|.+|....+ +.....-|+.|+.+.|++.
T Consensus 9 ~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~ 41 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPGREDRFFCPQCRALQAPDP 41 (207)
T ss_dssp --CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCT
T ss_pred CCCCCCCCCCCcccccccccccccccccCCCCC
Confidence 4568999997643 4567789999999988764
No 108
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.83 E-value=6.7 Score=25.75 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=17.5
Q ss_pred CccceeeeeecC----CCCCCCCCCcccCCC
Q 029636 139 CMNCHLLVILSK----SSPSCPNCKFVHSLP 165 (190)
Q Consensus 139 C~~Clmyvm~~k----~~p~CP~Ck~~v~~~ 165 (190)
|..|+.-.+-.. ....||.|+..+...
T Consensus 42 C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 42 CRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 455665443332 378999999887653
No 109
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.06 E-value=32 Score=27.85 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=20.1
Q ss_pred CCeEEeeCccceeeeeecCCCC-CCCCCCc
Q 029636 132 NNMVALACMNCHLLVILSKSSP-SCPNCKF 160 (190)
Q Consensus 132 ~~mv~~gC~~Clmyvm~~k~~p-~CP~Ck~ 160 (190)
..|..-.|+.|-+.+ -. ..| +||.|+.
T Consensus 167 ~~~~~~~C~~CG~i~-~g-~~p~~CP~C~~ 194 (202)
T 1yuz_A 167 DDDKFHLCPICGYIH-KG-EDFEKCPICFR 194 (202)
T ss_dssp CSCCEEECSSSCCEE-ES-SCCSBCTTTCC
T ss_pred CCCcEEEECCCCCEE-cC-cCCCCCCCCCC
Confidence 668899999997443 33 445 9999985
No 110
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.99 E-value=17 Score=23.79 Aligned_cols=27 Identities=19% Similarity=0.435 Sum_probs=17.4
Q ss_pred EeeCccceeee-eec-CCCCCCCCCCccc
Q 029636 136 ALACMNCHLLV-ILS-KSSPSCPNCKFVH 162 (190)
Q Consensus 136 ~~gC~~Clmyv-m~~-k~~p~CP~Ck~~v 162 (190)
---||+|---+ |.. ...-.|++|.++.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 45688886533 333 3447899998764
No 111
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=27.77 E-value=13 Score=24.63 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=17.8
Q ss_pred CccceeeeeecCCCCCCCCCCcccC
Q 029636 139 CMNCHLLVILSKSSPSCPNCKFVHS 163 (190)
Q Consensus 139 C~~Clmyvm~~k~~p~CP~Ck~~v~ 163 (190)
|..|+.-.+-......||.|+..+.
T Consensus 39 C~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 39 CDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 5677766665555679999998643
No 112
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=26.53 E-value=54 Score=23.20 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=26.7
Q ss_pred CCeEEeeCccceeeeeecCCCC--CCCCCCcccC
Q 029636 132 NNMVALACMNCHLLVILSKSSP--SCPNCKFVHS 163 (190)
Q Consensus 132 ~~mv~~gC~~Clmyvm~~k~~p--~CP~Ck~~v~ 163 (190)
..||..-|..|.-..-+..-.- +||.|++..-
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 5589999999998887777665 9999999863
No 113
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=26.28 E-value=14 Score=23.32 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=9.8
Q ss_pred CCCCCCCcccCC
Q 029636 153 PSCPNCKFVHSL 164 (190)
Q Consensus 153 p~CP~Ck~~v~~ 164 (190)
-.||+|+..++.
T Consensus 10 ~~C~~C~~~i~~ 21 (39)
T 2i5o_A 10 VPCEKCGSLVPV 21 (39)
T ss_dssp EECTTTCCEEEG
T ss_pred cccccccCcCCc
Confidence 479999998875
No 114
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.42 E-value=14 Score=30.61 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=21.1
Q ss_pred eCccceeee------ee--cCCCCCCCCCCcccCCCC
Q 029636 138 ACMNCHLLV------IL--SKSSPSCPNCKFVHSLPN 166 (190)
Q Consensus 138 gC~~Clmyv------m~--~k~~p~CP~Ck~~v~~~~ 166 (190)
.|.+|+|-+ -| .+.-..||+|..++-...
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~~ 236 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAEG 236 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECSC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeCc
Confidence 699999965 12 234579999999986543
No 115
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=24.87 E-value=18 Score=21.98 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=15.2
Q ss_pred CccceeeeeecCCCCCCCCCCcccC
Q 029636 139 CMNCHLLVILSKSSPSCPNCKFVHS 163 (190)
Q Consensus 139 C~~Clmyvm~~k~~p~CP~Ck~~v~ 163 (190)
|..|+.-.+ +....||-|+..++
T Consensus 32 ~~~Ci~~w~--~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 32 HAECVDMWL--GSHSTCPLCRLTVV 54 (55)
T ss_dssp CTTHHHHTT--TTCCSCSSSCCCSC
T ss_pred cHHHHHHHH--HcCCcCcCCCCEeE
Confidence 455664332 45789999998764
No 116
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=24.69 E-value=37 Score=26.54 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=14.5
Q ss_pred eeeeecCCCC-CCCCCCcccC
Q 029636 144 LLVILSKSSP-SCPNCKFVHS 163 (190)
Q Consensus 144 myvm~~k~~p-~CP~Ck~~v~ 163 (190)
+++.|.+..| +||.|.++.-
T Consensus 101 ~Wf~L~kg~p~RCpeCG~~fk 121 (129)
T 2y69_F 101 IWFWLHKGEAQRCPSCGTHYK 121 (129)
T ss_dssp EEEEEESSSCEECTTTCCEEE
T ss_pred EEEEEeCCCceeCCCCCeEEE
Confidence 5566777776 8999987653
No 117
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=21.87 E-value=1e+02 Score=21.66 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=22.2
Q ss_pred eEEeeCccceeeeeec----CCCCCCCCCCcccCC
Q 029636 134 MVALACMNCHLLVILS----KSSPSCPNCKFVHSL 164 (190)
Q Consensus 134 mv~~gC~~Clmyvm~~----k~~p~CP~Ck~~v~~ 164 (190)
+..+.|++|...-=++ ...|.|.+|+...+.
T Consensus 3 ~~~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~ 37 (148)
T 3p2a_A 3 AMNTVCTACMATNRLPEERIDDGAKCGRCGHSLFD 37 (148)
T ss_dssp EEEEECTTTCCEEEEESSCSCSCCBCTTTCCBTTC
T ss_pred ccEEECcccccccCCCCcccccCCcchhcCCcccc
Confidence 4567799999865343 355889999886654
No 118
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.71 E-value=34 Score=23.84 Aligned_cols=26 Identities=27% Similarity=0.726 Sum_probs=15.6
Q ss_pred eeCccceeeeeecCCCC--CCCCCCccc
Q 029636 137 LACMNCHLLVILSKSSP--SCPNCKFVH 162 (190)
Q Consensus 137 ~gC~~Clmyvm~~k~~p--~CP~Ck~~v 162 (190)
.-||.|-..++.....+ .||.|+...
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECTTTCCEE
T ss_pred eECcCCCchheecCCCCceEeCCCCCcc
Confidence 34788877665543332 577777544
No 119
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=21.49 E-value=13 Score=25.17 Aligned_cols=24 Identities=25% Similarity=0.706 Sum_probs=17.2
Q ss_pred CccceeeeeecCCCCCCCCCCccc
Q 029636 139 CMNCHLLVILSKSSPSCPNCKFVH 162 (190)
Q Consensus 139 C~~Clmyvm~~k~~p~CP~Ck~~v 162 (190)
|..|+.-.+.......||.|+..+
T Consensus 37 C~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 37 CDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred HHHHHHHHHHhcCCCcCcCCCCcC
Confidence 566776555445568999999875
No 120
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.65 E-value=22 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=18.2
Q ss_pred eEEeeCccceeeeeecCCCCCCCCCCccc
Q 029636 134 MVALACMNCHLLVILSKSSPSCPNCKFVH 162 (190)
Q Consensus 134 mv~~gC~~Clmyvm~~k~~p~CP~Ck~~v 162 (190)
.-.--|..|.-.+=.......||.|.+-+
T Consensus 130 ~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 130 KWRYVCIGCGRKFSTLPPGGVCPDCGSKV 158 (165)
T ss_dssp CCCEEESSSCCEESSCCGGGBCTTTCCBE
T ss_pred cEEEECCCCCCcccCCCCCCcCCCCCCcc
Confidence 34578999984432112234899999853
No 121
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.01 E-value=18 Score=23.07 Aligned_cols=25 Identities=32% Similarity=0.684 Sum_probs=16.2
Q ss_pred CccceeeeeecCCCCCCCCCCcccCC
Q 029636 139 CMNCHLLVILSKSSPSCPNCKFVHSL 164 (190)
Q Consensus 139 C~~Clmyvm~~k~~p~CP~Ck~~v~~ 164 (190)
|..|+.-.+ .+...+||.|+..+..
T Consensus 38 C~~Ci~~~~-~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 38 CESCMAALL-SSSSPKCTACQESIVK 62 (66)
T ss_dssp CHHHHHHHH-TTSSCCCTTTCCCCCT
T ss_pred HHHHHHHHH-HhCcCCCCCCCcCCCh
Confidence 445654433 2567899999987653
Done!