BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029637
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 92/167 (55%), Gaps = 10/167 (5%)
Query: 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQ 72
KT + + +GDI++ VD IV+ N L GG AIH AAGP L AC ++ + Q
Sbjct: 2 KTRIHVVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQ 57
Query: 73 PRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQY 131
CP G A IT LP V+HTVGPV+ ED +L+ AY N L + AN+
Sbjct: 58 GD--CPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTS 115
Query: 132 IAFPAISCGVSQYPPDEAATIAISTVKEFANDF---KEVHFILFTDD 175
+AFPAIS GV YP AA IA+ TV EF ++V+F+ + ++
Sbjct: 116 VAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEE 162
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 81/158 (51%), Gaps = 15/158 (9%)
Query: 33 DAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92
DAIV+ N LL GG IH AAGP L C + C G+A+IT G++LP
Sbjct: 77 DAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQS------CKTGKAKITGGYRLPA 130
Query: 93 SHVIHTVGPVFNFHCNPEDI--LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAA 150
+VIHTVGP+ + LRS Y + L + + ++ +AFP IS GV YP + AA
Sbjct: 131 KYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAA 190
Query: 151 TIAISTVKEFANDFKE-------VHFILFTDDIYNVWL 181
I ++T++E+ K+ F+ +DIY L
Sbjct: 191 EIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRL 228
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
L + +GD++R VD +V+ +NE L G AAA+ +AAGP+LQ C QI + + R+
Sbjct: 39 LIVQQGDLARLPVD----VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRL 94
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDI--LRSAYKNCLSVGKANNIQYIA 133
PG A I+ KLP HVIH VGP ++ + P + LR A + L + + + IA
Sbjct: 95 L--PGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIA 152
Query: 134 FPAISCGVSQYPPDEAATIAISTVKE---FAND---FKEVHFILFTDDIYNVWLKKAKEL 187
PAIS GV +P +S +KE F D KE++ + ++ + + K +
Sbjct: 153 IPAISSGVFGFPLGRCVETIVSAIKENFQFKKDGHCLKEIYLVDVSEKTVEAFAEAVKTV 212
Query: 188 LQ 189
+
Sbjct: 213 FK 214
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 5 VQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKA 64
+ T S L++ + DI+ +D SDA+V PTN +GG + + + G + +A
Sbjct: 10 LSTKSLFLGQKLQVVQADIA--SID--SDAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEA 65
Query: 65 CYQIPEAQPRVRCPPGE---ARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCL 121
++ R + P E A ++ G LP VIH PV+ E++L KNCL
Sbjct: 66 VLEL-----RKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCL 119
Query: 122 SVGKANNIQYIAFPAISCGVSQYPPDEAATI---AIST--VKEFANDFKEVHFILFTDDI 176
++ ++ IAFP+I G + +P AA + AIS+ V ++ K V+F+LF +
Sbjct: 120 ALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSES 179
Query: 177 YNVWLKKAKEL 187
+++++ +L
Sbjct: 180 IGIYVQEMAKL 190
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 20/192 (10%)
Query: 5 VQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKA 64
+ T S L++ + DI+ +D SDA+V PTN +GG + + G + +A
Sbjct: 28 LSTKSLFLGQKLQVVQADIA--SID--SDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEA 83
Query: 65 CYQIPEAQPRVRCPPGE---ARITPGFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNC 120
++ R + P E A ++ G LP VIH PV+ C E++L KNC
Sbjct: 84 VLEL-----RKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKC--EELLEKTVKNC 136
Query: 121 LSVGKANNIQYIAFPAISCGVSQYPPDEAATI---AIST--VKEFANDFKEVHFILFTDD 175
L++ ++ IAFP+I G + +P AA + AIS+ V ++ K V+F+LF +
Sbjct: 137 LALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSE 196
Query: 176 IYNVWLKKAKEL 187
+++++ +L
Sbjct: 197 SIGIYVQEMAKL 208
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
+++ +GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++
Sbjct: 4 IRVVQGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKI 55
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135
R GEA +T LPV +VIH V + +R A K+ L ++ +AFP
Sbjct: 56 RV--GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFP 111
Query: 136 AISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDD 175
+ GV P + A + + +K+ A D EV + ++
Sbjct: 112 LLGTGVGGLPVEAVARVXLEEIKK-APDTLEVTLYGYREE 150
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 33 DAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGE---ARITPGFK 89
+AI++PTN + L + + G + +A ++ R + P E A ++ G
Sbjct: 55 EAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLEL-----RKKNGPLEVAGAAVSAGHG 109
Query: 90 LPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDE 148
LP VIH PV+ C E++L KNCL++ ++ IAFP+I G + +P
Sbjct: 110 LPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQT 167
Query: 149 AATI---AIST--VKEFANDFKEVHFILFTDDIYNVWLKKAKEL 187
AA + AIS+ V ++ K V+F+LF + +++++ +L
Sbjct: 168 AAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKL 211
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 41 EILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVG 100
+++L G + ++ E AGP+LQ+ + + V G T + L +V+H V
Sbjct: 63 DLVLSRGPLSKSLLEKAGPELQEELDTVGQG---VAVSMGTVLKTSSWNLDCRYVLHVVA 119
Query: 101 PVF-NFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 159
P + N + I+ + C+ + ++ +++ IAFPAI G +P + A + IS V +
Sbjct: 120 PEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFK 179
Query: 160 FAND-----FKEVHFILFTDDIYNV 179
F++ +EVHF+L D N+
Sbjct: 180 FSSKNQLKTLQEVHFLLHPSDHENI 204
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 139
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 140 GVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 174
V P + + + +K+ A D EV + T+
Sbjct: 116 WVGGLPAEAVLRVMLEEIKK-APDTLEVTGVHGTE 149
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 139
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 140 GVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 174
V P + + + +K+ A D EV + T+
Sbjct: 116 WVGGLPAEAVLRVMLEEIKK-APDTLEVTGVHGTE 149
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 139
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 140 GVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 174
V P + + + +K+ A D EV + T+
Sbjct: 116 WVGGLPAEAVLRVMLEEIKK-APDTLEVTGVHGTE 149
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 14/178 (7%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + + E
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGK 125
R GE +TP L + +V HTVGP+ + + E + L A+ L +
Sbjct: 69 QFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAE 128
Query: 126 ANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF-ANDFKEVHFILFTDDIYNVWLK 182
++ IAFPA+S G+ ++ + VK F + KEV +++ V LK
Sbjct: 129 EMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALK 186
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 14/178 (7%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + + E
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGK 125
R GE +TP L + +V HTVGP+ + + E + L A+ L +
Sbjct: 69 QFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAE 128
Query: 126 ANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF-ANDFKEVHFILFTDDIYNVWLK 182
++ IAFPA+S G+ ++ + VK F + KEV +++ V LK
Sbjct: 129 EMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALK 186
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 14/186 (7%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + E
Sbjct: 22 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAXRE 77
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGK 125
R GE +TP L + +V HTVGP+ + + E + L A+ L +
Sbjct: 78 QFGRDYIDHGEVVVTPAXNLEERGIKYVFHTVGPICSGXWSEELKEKLYKAFLGPLEKAE 137
Query: 126 ANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF-ANDFKEVHFILFTDDIYNVWLKKA 184
++ IAFPA+S G+ ++ + VK F + KEV +++ V LK
Sbjct: 138 EXGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVF 197
Query: 185 KELLQG 190
+ L+G
Sbjct: 198 ERSLEG 203
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 13/155 (8%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 139
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 140 GVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 174
V P + + +K+ A D EV + T+
Sbjct: 116 WVGGLPAEAVFRVXFEEIKK-APDTLEVTGVHGTE 149
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
++ +GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++
Sbjct: 4 IRAVQGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKI 55
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135
R GEA +T LPV +VIH V + +R A K+ L ++ +AF
Sbjct: 56 RV--GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFT 111
Query: 136 AISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 174
A+ V P + + +K+ A D EV + T+
Sbjct: 112 ALGAWVGGLPAEAVLRVXDEEIKK-APDTLEVTGVHGTE 149
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + + E
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGK 125
R GE +TP L + +V HTVGP+ + + E + L A+ L +
Sbjct: 69 QFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAE 128
Query: 126 ANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF----ANDFKEVH 168
++ IAFPA+S G+ ++ ++ VK F + EVH
Sbjct: 129 EMGVESIAFPAVSAGIYGCDAEKVVETSLEAVKNFKGSAVKEVAEVH 175
>pdb|4ABK|A Chain A, Human Parp14 (Artd8, Bal2) - Macro Domain 3 In Complex
With Adenosine-5-Diphosphoribose
pdb|4ABL|A Chain A, Human Parp14 (Artd8, Bal2) - Macro Domain 3
Length = 183
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 24/176 (13%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
+++ GDI++ +D IV+ T+ L + AI E AG ++++ C Q +AQ R
Sbjct: 24 FQVASGDITK----EEADVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQ--QAQQR- 76
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135
+ IT G L ++IH +G + ++S+ + L + N I P
Sbjct: 77 ---KNDYIITGGGFLRCKNIIHVIGG---------NDVKSSVSSVLQECEKKNYSSICLP 124
Query: 136 AISCGVSQYPPDEAATIAISTVKEF-----ANDFKEVHFILFTDDIYNVWLKKAKE 186
AI G ++ PD+ A I +++F A K+V ++F + +V+ K+
Sbjct: 125 AIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLPQVLDVFYANMKK 180
>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|B Chain B, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|C Chain C, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|D Chain D, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
Length = 193
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 9/177 (5%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
L +++ DIS R + IV PT + L A+ +A G + + ++ ++Q +
Sbjct: 21 LSLTQSDISHIGSMRV-EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPL 79
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135
EA ++ L VIH P + E+ L KNCLS + ++ +AFP
Sbjct: 80 EV--AEAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFP 136
Query: 136 AISCGVSQYPPDEAATIAISTVKEFAND-----FKEVHFILFTDDIYNVWLKKAKEL 187
G + +P AA + + + +D K V+F+LF + +++++ +L
Sbjct: 137 PFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQEMAKL 193
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 80 GEARITPGFKLPVSHVIHTVGPVFN--FHCNPEDILRSAYKNCLSVGKANNIQYIAFPAI 137
G+AR+ G H+IH VGP FN + L AY++ + NN + +A P +
Sbjct: 55 GKARLVKG---AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLL 111
Query: 138 SCGV 141
S G+
Sbjct: 112 STGI 115
>pdb|3EWO|A Chain A, Ibv Nsp3 Adrp Domain
pdb|3EWO|B Chain B, Ibv Nsp3 Adrp Domain
pdb|3EWP|A Chain A, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
pdb|3EWP|B Chain B, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
Length = 177
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 35 IVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94
IV+ NE + GG A AI + GPD + C + P + +TP F +
Sbjct: 40 IVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKH-----GPQQKLVTPSFVKGIQC 94
Query: 95 VIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV 141
V + VGP N + L +AYK+ L G N + P +S G+
Sbjct: 95 VNNVVGPRHG-DSNLREKLVAAYKSVLVGGVVNYV----VPVLSSGI 136
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAI 137
G AR+T VIH VGP F H E +L++AY + +NI+ +A P +
Sbjct: 395 GTARMTVCLG---KKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLL 451
Query: 138 SCGV 141
S G+
Sbjct: 452 STGI 455
>pdb|2VRI|A Chain A, Structure Of The Nsp3 X-Domain Of Human Coronavirus Nl63
Length = 174
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 12/132 (9%)
Query: 10 FSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIP 69
F+ ++K GDIS S D +V+ NE LL GG A AI LQ
Sbjct: 13 FAVYKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYI 72
Query: 70 EAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNI 129
+ ++ G F +V + VGP H +L AY + L N I
Sbjct: 73 SSNGPLKVGAGVMLECEKF-----NVFNVVGPRTGKH--EHSLLVEAYNSILF---ENGI 122
Query: 130 QYIAFPAISCGV 141
+ P +SCG+
Sbjct: 123 PLM--PLLSCGI 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,794,923
Number of Sequences: 62578
Number of extensions: 230630
Number of successful extensions: 517
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 28
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)