Query 029637
Match_columns 190
No_of_seqs 127 out of 1062
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 16:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 5.3E-48 1.2E-52 297.9 18.9 168 7-181 11-185 (186)
2 cd02907 Macro_Af1521_BAL_like 100.0 2.4E-45 5.2E-50 283.0 19.8 169 13-187 1-175 (175)
3 cd02908 Macro_Appr_pase_like M 100.0 6.5E-45 1.4E-49 278.1 19.8 160 15-184 1-164 (165)
4 PRK00431 RNase III inhibitor; 100.0 1.3E-44 2.8E-49 279.4 20.0 172 12-189 1-176 (177)
5 PRK04143 hypothetical protein; 100.0 1.9E-44 4.1E-49 291.6 20.3 171 12-187 81-262 (264)
6 cd02905 Macro_GDAP2_like Macro 100.0 8.4E-44 1.8E-48 264.5 16.1 137 15-161 2-140 (140)
7 COG2110 Predicted phosphatase 100.0 1.8E-41 4E-46 259.2 18.0 172 14-189 3-177 (179)
8 cd02906 Macro_1 Macro domain, 100.0 9E-41 1.9E-45 250.4 14.4 139 15-158 1-147 (147)
9 cd02903 Macro_BAL_like Macro d 100.0 3.7E-40 8.1E-45 244.6 15.9 135 14-160 1-137 (137)
10 cd03330 Macro_2 Macro domain, 100.0 1E-35 2.3E-40 219.7 15.8 132 15-157 1-132 (133)
11 cd02900 Macro_Appr_pase Macro 100.0 1.9E-33 4.1E-38 217.3 15.9 149 13-161 18-186 (186)
12 smart00506 A1pp Appr-1"-p proc 100.0 2.5E-31 5.5E-36 195.5 14.8 131 15-153 1-133 (133)
13 KOG2633 Hismacro and SEC14 dom 100.0 3.7E-31 8E-36 203.5 14.5 164 5-184 22-193 (200)
14 cd02749 Macro Macro domain, a 100.0 2.8E-30 6.1E-35 193.2 15.3 136 15-157 1-146 (147)
15 PF01661 Macro: Macro domain; 100.0 3E-29 6.5E-34 180.6 9.6 116 36-153 1-118 (118)
16 PRK13341 recombination factor 99.9 3.7E-29 8E-34 227.2 -0.4 174 11-189 472-707 (725)
17 cd02901 Macro_Poa1p_like Macro 99.9 4E-24 8.7E-29 158.9 13.4 132 15-158 1-138 (140)
18 PHA02595 tk.4 hypothetical pro 99.8 1.1E-18 2.3E-23 131.8 16.8 149 15-174 2-153 (154)
19 PF14519 Macro_2: Macro-like d 99.6 6.3E-15 1.4E-19 119.1 10.3 144 14-161 42-214 (280)
20 cd03331 Macro_Poa1p_like_SNF2 99.1 7.3E-09 1.6E-13 77.9 14.3 137 15-156 1-148 (152)
21 TIGR02452 conserved hypothetic 98.1 2.7E-05 5.8E-10 63.7 8.9 168 13-181 55-265 (266)
22 PF10154 DUF2362: Uncharacteri 97.3 0.0039 8.4E-08 55.3 11.9 157 33-189 291-503 (510)
23 COG4295 Uncharacterized protei 97.3 0.0028 6.1E-08 50.0 9.3 78 110-187 199-281 (285)
24 PHA03033 hypothetical protein; 94.8 0.12 2.5E-06 37.4 5.9 80 15-106 2-82 (142)
25 PHA00684 hypothetical protein 82.3 17 0.00036 26.4 9.7 100 34-156 2-101 (128)
26 KOG1502 Flavonol reductase/cin 62.5 19 0.00041 30.6 5.2 47 91-137 78-129 (327)
27 PRK14827 undecaprenyl pyrophos 59.8 72 0.0016 26.7 8.1 39 114-152 97-135 (296)
28 PF01073 3Beta_HSD: 3-beta hyd 58.3 32 0.00069 28.2 5.9 45 91-135 66-114 (280)
29 PLN02214 cinnamoyl-CoA reducta 57.6 21 0.00046 29.9 4.8 43 91-136 81-126 (342)
30 PRK14837 undecaprenyl pyrophos 54.1 27 0.00058 28.1 4.6 41 113-153 35-75 (230)
31 KOG4506 Uncharacterized conser 52.2 20 0.00044 31.0 3.8 66 76-141 416-484 (598)
32 TIGR00055 uppS undecaprenyl di 50.1 37 0.00079 27.3 4.8 47 114-161 29-75 (226)
33 cd00475 CIS_IPPS Cis (Z)-Isopr 50.0 36 0.00078 27.2 4.7 47 114-161 30-76 (221)
34 PRK07475 hypothetical protein; 47.8 76 0.0017 25.5 6.4 97 76-176 26-134 (245)
35 COG2388 Predicted acetyltransf 47.3 27 0.00059 24.2 3.2 41 93-136 40-80 (99)
36 PRK14841 undecaprenyl pyrophos 45.9 44 0.00096 26.9 4.7 41 113-153 32-72 (233)
37 PRK14842 undecaprenyl pyrophos 45.7 46 0.00099 27.0 4.7 47 114-161 38-84 (241)
38 PRK14833 undecaprenyl pyrophos 45.2 47 0.001 26.8 4.7 47 114-161 34-80 (233)
39 CHL00194 ycf39 Ycf39; Provisio 43.7 1.8E+02 0.0039 23.8 8.2 44 91-134 64-107 (317)
40 PRK14840 undecaprenyl pyrophos 43.5 52 0.0011 26.9 4.7 40 114-153 52-91 (250)
41 cd06155 eu_AANH_C_1 A group of 43.4 1E+02 0.0022 20.9 5.9 25 165-189 50-74 (101)
42 PLN02657 3,8-divinyl protochlo 43.2 1.6E+02 0.0035 25.3 8.1 45 91-135 136-180 (390)
43 PF15162 DUF4580: Domain of un 42.8 60 0.0013 24.5 4.6 60 128-189 38-101 (162)
44 PRK14839 undecaprenyl pyrophos 42.5 56 0.0012 26.5 4.7 47 114-161 39-85 (239)
45 PRK14832 undecaprenyl pyrophos 42.3 54 0.0012 26.8 4.7 40 114-153 48-87 (253)
46 PRK14829 undecaprenyl pyrophos 42.2 57 0.0012 26.4 4.8 39 114-152 44-82 (243)
47 PRK14838 undecaprenyl pyrophos 41.9 57 0.0012 26.5 4.7 47 114-161 40-86 (242)
48 PRK14831 undecaprenyl pyrophos 41.7 54 0.0012 26.7 4.6 39 114-152 50-88 (249)
49 KOG1602 Cis-prenyltransferase 40.7 53 0.0011 27.0 4.3 43 111-153 63-105 (271)
50 PRK10240 undecaprenyl pyrophos 40.3 66 0.0014 25.8 4.9 47 114-161 23-69 (229)
51 PRK14834 undecaprenyl pyrophos 39.6 71 0.0015 26.0 5.0 39 114-152 44-82 (249)
52 PTZ00372 endonuclease 4-like p 39.5 2.1E+02 0.0046 25.2 8.2 58 112-171 215-273 (413)
53 PRK15181 Vi polysaccharide bio 39.4 60 0.0013 27.2 4.8 46 91-136 90-140 (348)
54 PRK14828 undecaprenyl pyrophos 39.3 68 0.0015 26.2 4.9 40 114-153 57-96 (256)
55 PRK14835 undecaprenyl pyrophos 38.2 76 0.0016 26.3 5.0 39 114-152 71-109 (275)
56 COG0648 Nfo Endonuclease IV [D 38.2 2.2E+02 0.0049 23.6 7.7 64 91-161 67-131 (280)
57 PF01255 Prenyltransf: Putativ 36.7 63 0.0014 25.7 4.2 45 115-160 25-69 (223)
58 PTZ00349 dehydrodolichyl dipho 36.5 73 0.0016 27.0 4.7 40 114-153 49-88 (322)
59 COG0621 MiaB 2-methylthioadeni 35.4 1.3E+02 0.0027 26.8 6.2 84 85-174 151-237 (437)
60 PRK06052 5-methyltetrahydropte 34.9 1.1E+02 0.0024 26.2 5.5 44 110-153 141-187 (344)
61 TIGR03234 OH-pyruv-isom hydrox 32.8 2.4E+02 0.0053 22.2 7.2 51 111-162 80-130 (254)
62 PF05185 PRMT5: PRMT5 arginine 32.4 31 0.00068 30.5 2.0 27 13-39 240-266 (448)
63 PF13460 NAD_binding_10: NADH( 32.3 74 0.0016 23.4 3.9 36 91-134 60-95 (183)
64 PF01042 Ribonuc_L-PSP: Endori 31.9 1.6E+02 0.0035 20.5 5.4 26 165-190 67-92 (121)
65 PLN02662 cinnamyl-alcohol dehy 31.6 1.6E+02 0.0035 23.8 6.1 45 91-135 76-125 (322)
66 PRK14836 undecaprenyl pyrophos 30.5 93 0.002 25.4 4.3 50 110-160 40-89 (253)
67 cd06150 YjgF_YER057c_UK114_lik 30.5 1.8E+02 0.0038 19.8 5.9 25 165-189 53-77 (105)
68 PRK14830 undecaprenyl pyrophos 30.2 1.1E+02 0.0024 24.9 4.7 44 110-153 48-91 (251)
69 cd06154 YjgF_YER057c_UK114_lik 30.0 1.9E+02 0.0041 20.2 5.5 51 109-189 42-92 (119)
70 PTZ00325 malate dehydrogenase; 29.8 1.6E+02 0.0035 24.8 5.8 44 91-134 76-122 (321)
71 PRK11401 putative endoribonucl 29.0 2.1E+02 0.0046 20.3 5.9 25 165-189 72-96 (129)
72 TIGR00004 endoribonuclease L-P 26.7 2.2E+02 0.0048 19.8 5.4 24 166-189 73-96 (124)
73 PLN02778 3,5-epimerase/4-reduc 26.6 1.2E+02 0.0025 24.9 4.4 44 91-134 57-108 (298)
74 PF14542 Acetyltransf_CG: GCN5 26.5 1.6E+02 0.0035 19.0 4.2 40 93-136 23-63 (78)
75 COG0020 UppS Undecaprenyl pyro 26.2 2E+02 0.0042 23.4 5.5 42 111-152 43-84 (245)
76 TIGR03610 RutC pyrimidine util 25.9 2.3E+02 0.005 20.1 5.4 25 165-189 74-98 (127)
77 PF09039 HTH_Tnp_Mu_2: Mu DNA 25.7 51 0.0011 23.2 1.8 24 111-137 49-72 (108)
78 PLN02986 cinnamyl-alcohol dehy 25.6 2.1E+02 0.0045 23.3 5.8 46 91-136 77-127 (322)
79 KOG3716 Carnitine O-acyltransf 24.5 1.6E+02 0.0034 27.8 5.0 50 108-157 516-568 (764)
80 PRK06199 ornithine cyclodeamin 24.3 3E+02 0.0065 23.8 6.6 70 111-189 135-206 (379)
81 KOG1577 Aldo/keto reductase fa 23.8 72 0.0016 26.8 2.6 26 133-158 14-39 (300)
82 PRK05086 malate dehydrogenase; 23.8 4.3E+02 0.0093 22.0 9.6 65 91-161 69-136 (312)
83 PLN02725 GDP-4-keto-6-deoxyman 21.5 1.9E+02 0.004 23.2 4.7 43 91-134 49-98 (306)
84 KOG0079 GTP-binding protein H- 21.1 81 0.0017 24.0 2.1 20 1-20 43-63 (198)
85 PF05625 PAXNEB: PAXNEB protei 20.8 4.6E+02 0.0099 22.5 7.0 68 110-177 179-254 (363)
86 COG4822 CbiK Cobalamin biosynt 20.4 4.7E+02 0.01 21.2 6.5 64 120-188 65-131 (265)
87 PF08436 DXP_redisom_C: 1-deox 20.1 1E+02 0.0023 20.7 2.3 42 114-155 8-49 (84)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=5.3e-48 Score=297.90 Aligned_cols=168 Identities=24% Similarity=0.440 Sum_probs=154.9
Q ss_pred eeeeCCCceEEEEEccc--ceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEE
Q 029637 7 TLSFSTKTSLKISKGDI--SRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI 84 (190)
Q Consensus 7 ~~~~~~~~~i~i~~GdI--~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~ 84 (190)
++++-.+.+|.+++||| |++++ |+|||++|+.+.+++|+++||++++|+++++||+++.+. .+++++|++++
T Consensus 11 ~~~~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~~~i 84 (186)
T cd02904 11 TKSLFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKS--NGPLEIAGAAV 84 (186)
T ss_pred chhhcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHh--cCCCCCCCEEE
Confidence 45566688999999999 98876 999999999999999999999999999999999987532 36899999999
Q ss_pred ccCCCCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc--
Q 029637 85 TPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN-- 162 (190)
Q Consensus 85 t~~~~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~-- 162 (190)
|++++|+||||||+|+|.|..+ ++++.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++
T Consensus 85 T~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~ 163 (186)
T cd02904 85 SQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVST 163 (186)
T ss_pred ccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999764 4578999999999999999999999999999999999999999999999999985
Q ss_pred ---CCCeEEEEecChHHHHHHH
Q 029637 163 ---DFKEVHFILFTDDIYNVWL 181 (190)
Q Consensus 163 ---~l~~V~~v~~~~~~~~~f~ 181 (190)
.+++|+||+|+++.++.|.
T Consensus 164 ~~~~l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 164 MSSSIKQIYFVLFDSESIGIYV 185 (186)
T ss_pred CCCCccEEEEEECCHHHHHHhh
Confidence 4789999999999999984
No 2
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=2.4e-45 Score=282.96 Aligned_cols=169 Identities=33% Similarity=0.468 Sum_probs=157.7
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~ 92 (190)
+.+|++++|||+++++ ||||||+|+.+.+++|++++|++++|++++++|+++.+. .+++++|++++|++++|+|
T Consensus 1 ~~~i~i~~GdI~~~~~----DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~--~g~~~~G~~~~T~~~~L~~ 74 (175)
T cd02907 1 GVTLSVIKGDITRFPV----DAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRK--NGPVPTGEVVVTSAGKLPC 74 (175)
T ss_pred CcEEEEEECCcceeec----CEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHh--cCCCCCCcEEEecCCCCCC
Confidence 4789999999999986 999999999999999999999999999999999987633 4589999999999999999
Q ss_pred CeEEEEeCCccCCCC--ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc----CCCe
Q 029637 93 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN----DFKE 166 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~----~l~~ 166 (190)
|||||+++|.|+.+. ++.+.|++||++||+.|.+++++|||||+||||.+|+|++++|++|++++++|+. .+++
T Consensus 75 k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~ 154 (175)
T cd02907 75 KYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKE 154 (175)
T ss_pred CEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccE
Confidence 999999999999864 4578999999999999999999999999999999999999999999999999986 5789
Q ss_pred EEEEecChHHHHHHHHHHHHH
Q 029637 167 VHFILFTDDIYNVWLKKAKEL 187 (190)
Q Consensus 167 V~~v~~~~~~~~~f~~~~~~~ 187 (190)
|+||+++++.+++|++.+..|
T Consensus 155 I~~v~~~~~~~~~~~~al~~~ 175 (175)
T cd02907 155 IYLVDYDEQTVEAFEKALEVF 175 (175)
T ss_pred EEEEECCHHHHHHHHHHHhhC
Confidence 999999999999999988754
No 3
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=6.5e-45 Score=278.06 Aligned_cols=160 Identities=46% Similarity=0.772 Sum_probs=151.3
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCCCe
Q 029637 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~ 94 (190)
+|+|++|||+++++ |||||++|+.+.++||++++|++++|++++++|++.. ++++|++++|++|+|+|+|
T Consensus 1 ~i~i~~GdI~~~~~----daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~------~~~~G~~v~T~~~~l~~~~ 70 (165)
T cd02908 1 KIEIIQGDITKLEV----DAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELR------GCPTGEAVITSGYNLPAKY 70 (165)
T ss_pred CeEEEecccceeec----CEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCCEEEeeCCCCCCCE
Confidence 48899999999876 9999999999999999999999999999999999875 6799999999999999999
Q ss_pred EEEEeCCccCCCC-ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc---CCCeEEEE
Q 029637 95 VIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN---DFKEVHFI 170 (190)
Q Consensus 95 IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~---~l~~V~~v 170 (190)
|||+++|.|+.+. ++.+.|++||++||+.|++++++|||||+||||++|+|++++|++|++++++|++ .+++|+||
T Consensus 71 IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~l~~V~~v 150 (165)
T cd02908 71 VIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFV 150 (165)
T ss_pred EEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999998763 5679999999999999999999999999999999999999999999999999996 58899999
Q ss_pred ecChHHHHHHHHHH
Q 029637 171 LFTDDIYNVWLKKA 184 (190)
Q Consensus 171 ~~~~~~~~~f~~~~ 184 (190)
+++++++++|++.+
T Consensus 151 ~~~~~~~~~f~~~l 164 (165)
T cd02908 151 CFSEEDYEIYEKAL 164 (165)
T ss_pred eCCHHHHHHHHHHh
Confidence 99999999999875
No 4
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=1.3e-44 Score=279.39 Aligned_cols=172 Identities=40% Similarity=0.638 Sum_probs=159.6
Q ss_pred CCceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 029637 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (190)
Q Consensus 12 ~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~ 91 (190)
++.+|+|++|||+++++ ||||||+|+.+.+++|++++|++++|++++++|+++.+. .+++++|++++|++++|+
T Consensus 1 ~~~~i~i~~Gdi~~~~~----daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~--~~~l~~G~~~~T~~~~l~ 74 (177)
T PRK00431 1 MGMRIEVVQGDITELEV----DAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQ--QGPCPTGEAVITSAGRLP 74 (177)
T ss_pred CCcEEEEEeCCcccccC----CEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeEEEecCCCCC
Confidence 36799999999999875 999999999999999999999999999999999988643 368999999999999999
Q ss_pred CCeEEEEeCCccCCCC-ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc---CCCeE
Q 029637 92 VSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN---DFKEV 167 (190)
Q Consensus 92 ~~~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~---~l~~V 167 (190)
++||||+++|.|+... .+.+.|++||++||+.|++++++|||||+||||++|+|++++|++|++++++|++ .+++|
T Consensus 75 ~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I 154 (177)
T PRK00431 75 AKYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEV 154 (177)
T ss_pred CCEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEE
Confidence 9999999999998764 3578999999999999999999999999999999999999999999999999975 57899
Q ss_pred EEEecChHHHHHHHHHHHHHhc
Q 029637 168 HFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 168 ~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
+||+++++.+++|+++|....+
T Consensus 155 ~~v~~~~~~~~~f~~~l~~~~~ 176 (177)
T PRK00431 155 YFVCYDEEAYRLYERLLTQQGD 176 (177)
T ss_pred EEEECCHHHHHHHHHHHHHhhc
Confidence 9999999999999999987654
No 5
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=291.57 Aligned_cols=171 Identities=36% Similarity=0.523 Sum_probs=155.8
Q ss_pred CCceEEEEEcccceeccCCCCcEEEEcCCCCCCCC-----chHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEcc
Q 029637 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLG-----GFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP 86 (190)
Q Consensus 12 ~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~-----~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~ 86 (190)
.+.+|.|++||||++++ |||||++|+.+.++ ||++.+|++++|++|+++|+++++. +++.+++|++++|+
T Consensus 81 ~~~~i~i~~GDIt~l~v----DAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~-~g~~~~~G~a~iT~ 155 (264)
T PRK04143 81 KYDNIFLWQGDITRLKV----DAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTE-QGRKEATGQAKITR 155 (264)
T ss_pred CCCEEEEEECCcceeec----CEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHH-cCCCCCCceEEEec
Confidence 46899999999999976 99999999998753 8999999999999999999988754 34578999999999
Q ss_pred CCCCCCCeEEEEeCCccCCC---CChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcC
Q 029637 87 GFKLPVSHVIHTVGPVFNFH---CNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND 163 (190)
Q Consensus 87 ~~~l~~~~IiH~v~P~~~~~---~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~ 163 (190)
+|+|+|+||||+|+|.|+.+ ..+.+.|++||++||+.|.+++++|||||+||||++|||++.+|++|++++++|++.
T Consensus 156 ~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~ 235 (264)
T PRK04143 156 AYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKE 235 (264)
T ss_pred CCCCCCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999874 245789999999999999999999999999999999999999999999999999973
Q ss_pred ---CCeEEEEecChHHHHHHHHHHHHH
Q 029637 164 ---FKEVHFILFTDDIYNVWLKKAKEL 187 (190)
Q Consensus 164 ---l~~V~~v~~~~~~~~~f~~~~~~~ 187 (190)
..+|+|++|+++.++.|.+.+...
T Consensus 236 ~~~~~~Vif~vf~~~d~~iy~~~l~~~ 262 (264)
T PRK04143 236 NPSKLKVVFNVFTDEDLELYQKALNKE 262 (264)
T ss_pred CCCCCEEEEEEcCHHHHHHHHHHHHHh
Confidence 358999999999999999988754
No 6
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=8.4e-44 Score=264.47 Aligned_cols=137 Identities=38% Similarity=0.609 Sum_probs=129.7
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCCCe
Q 029637 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~ 94 (190)
+|.+++|||+++++ |||||++|+.+.+++|++++|++++|+++++||++.. ++++|++++|++++|+|+|
T Consensus 2 ki~l~~GdIt~~~v----DaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~------~~~~G~~~~T~~~~L~~k~ 71 (140)
T cd02905 2 RIVLWEGDICNLNV----DAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLG------GCRTGEAKLTKGYNLPARF 71 (140)
T ss_pred eEEEEeCccCcccC----CEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCcEEEecCCCCCccE
Confidence 58899999999876 9999999999999999999999999999999998764 6899999999999999999
Q ss_pred EEEEeCCccCCCCC--hHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 95 VIHTVGPVFNFHCN--PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 95 IiH~v~P~~~~~~~--~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
|||+++|+|++++. .++.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|+
T Consensus 72 VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 72 IIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999998753 46899999999999999999999999999999999999999999999999996
No 7
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=259.22 Aligned_cols=172 Identities=38% Similarity=0.617 Sum_probs=160.4
Q ss_pred ceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCCC
Q 029637 14 TSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVS 93 (190)
Q Consensus 14 ~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~ 93 (190)
..|.+++||||++++ |+|||++|+.+.++|||+.+|++++|++++++|+.......+++.++|++++|++++|+++
T Consensus 3 ~~i~~v~GDIt~~~~----daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~ 78 (179)
T COG2110 3 TNIRVVQGDITKLEA----DAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAK 78 (179)
T ss_pred ceEEEEecccceeeh----hheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCC
Confidence 579999999999986 9999999999999999999999999999999999987555566788999999999999999
Q ss_pred eEEEEeCCccCCCC-ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc--CCCeEEEE
Q 029637 94 HVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN--DFKEVHFI 170 (190)
Q Consensus 94 ~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~--~l~~V~~v 170 (190)
||||+++|.|..+. ...+.|+.||+++|++|.+.+++|||||++|||.+|+|++++++++++++++|+. .+..|.||
T Consensus 79 ~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~~~~~~v~~v 158 (179)
T COG2110 79 YVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPEASIETVIFV 158 (179)
T ss_pred EEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhcccccccEEEEE
Confidence 99999999998875 4568999999999999999999999999999999999999999999999999996 78899999
Q ss_pred ecChHHHHHHHHHHHHHhc
Q 029637 171 LFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 171 ~~~~~~~~~f~~~~~~~~~ 189 (190)
+++++.+..|...+.+.+.
T Consensus 159 ~~~~e~~~~~~~~~~~~~~ 177 (179)
T COG2110 159 VYGEETARVYEELLSTHLV 177 (179)
T ss_pred ecCchhHHHHHHHHhhhcc
Confidence 9999999999998877653
No 8
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=9e-41 Score=250.40 Aligned_cols=139 Identities=41% Similarity=0.653 Sum_probs=127.3
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCC-----CchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCC
Q 029637 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLL-----GGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK 89 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~-----~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~ 89 (190)
+|.+++|||+++++ |||||++|+.+.+ +||++++|++++|++++++|+++.+. .++.+++|++++|++++
T Consensus 1 ~i~v~~GdIt~~~~----DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~-~g~~~~~G~a~~T~~~~ 75 (147)
T cd02906 1 SIYLWKGDITTLKV----DAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTK-QGREEPTGQAKITPGYN 75 (147)
T ss_pred CeEEEECCcCCccC----CEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHh-cCCCCCCCeEEEEeCCC
Confidence 47899999999875 9999999999864 48999999999999999999988643 34578999999999999
Q ss_pred CCCCeEEEEeCCccCCCC---ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHH
Q 029637 90 LPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 158 (190)
Q Consensus 90 l~~~~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~ 158 (190)
|+|+||||+++|+|..+. ++...|++||++||+.|.+++++|||||+||||++|||++++|+++++++|
T Consensus 76 L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 76 LPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred CCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 999999999999998754 357899999999999999999999999999999999999999999999975
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=3.7e-40 Score=244.58 Aligned_cols=135 Identities=33% Similarity=0.445 Sum_probs=126.0
Q ss_pred ceEEEEEcccceeccCCCCcEEEEcCCCC-CCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCC-CCcEEEccCCCCC
Q 029637 14 TSLKISKGDISRWCVDRSSDAIVSPTNEI-LLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCP-PGEARITPGFKLP 91 (190)
Q Consensus 14 ~~i~i~~GdI~~~~~~~~~d~IVn~~n~~-~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~-~G~~~~t~~~~l~ 91 (190)
.+|++++|||+++++ |||||++|+. +.++||++++|++++|++++++|+++. .++ +|++++|++++|+
T Consensus 1 ~~i~i~~GdI~~~~~----DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~------~~~~~G~~~vT~~~~L~ 70 (137)
T cd02903 1 LTLQVAKGDIEDETT----DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAK------LGQTVGSVIVTKGGNLP 70 (137)
T ss_pred CEEEEEeCccCCccC----CEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHc------CCCCCCeEEEecCCCCC
Confidence 378999999999875 9999999999 788999999999999999999999875 234 6999999999999
Q ss_pred CCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHH
Q 029637 92 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 160 (190)
Q Consensus 92 ~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~ 160 (190)
|+||||+++|+|..+ +...|+++|++||+.|++++++|||||+||||.+|+|++++|++|++++++|
T Consensus 71 ~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 71 CKYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999865 5689999999999999999999999999999999999999999999999886
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=100.00 E-value=1e-35 Score=219.67 Aligned_cols=132 Identities=31% Similarity=0.456 Sum_probs=122.6
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCCCe
Q 029637 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~ 94 (190)
.|++++|||+++++ |+|||++|+.+.+++|++++|++++|++++++|++. +++++|++++|++++|++||
T Consensus 1 ~i~i~~GdI~~~~~----DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~------~~~~~G~~~~t~~~~l~~k~ 70 (133)
T cd03330 1 ELEVVQGDITKVDA----DAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRK------APIPVGEAVITGAGDLPARY 70 (133)
T ss_pred CEEEEEcccccccC----CEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHc------CCCCCCeEEEEeCCCCCCCE
Confidence 47899999999875 999999999999999999999999999999998864 37899999999999999999
Q ss_pred EEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHH
Q 029637 95 VIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 157 (190)
Q Consensus 95 IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i 157 (190)
|||+++|.+.. ..+.+.|++||+++|+.|.+++++|||||+||||.+|+|+++++++|.+++
T Consensus 71 Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 71 VIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred EEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 99999997655 346789999999999999999999999999999999999999999999886
No 11
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=100.00 E-value=1.9e-33 Score=217.31 Aligned_cols=149 Identities=21% Similarity=0.176 Sum_probs=128.4
Q ss_pred CceEEEEEcccceecc------CCCCcEEEEcCCCCCCCCchHHHHHHHHcC-cchHHHHhhccccCCCCCCCCCcEEEc
Q 029637 13 KTSLKISKGDISRWCV------DRSSDAIVSPTNEILLLGGFTAAAIHEAAG-PDLQKACYQIPEAQPRVRCPPGEARIT 85 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~------~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G-~~l~~~~~~~~~~~~~~~~~~G~~~~t 85 (190)
-..+.+++|++++++. .+++|+||||+|+.+.|+||++.+|++++| ++++++|++....+..+.+++|++++|
T Consensus 18 ~~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it 97 (186)
T cd02900 18 SKYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVV 97 (186)
T ss_pred CCCeEEEeCCceecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEe
Confidence 3558888888887762 234699999999999999999999999999 689998976543333479999999999
Q ss_pred cCCCCC----------CCeEEEEeCCccC-CCCChHHHHHHHHHHHHHHHHHc--CCceeeecccccCCCCCChHHHHHH
Q 029637 86 PGFKLP----------VSHVIHTVGPVFN-FHCNPEDILRSAYKNCLSVGKAN--NIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 86 ~~~~l~----------~~~IiH~v~P~~~-~~~~~~~~L~~~~~~~L~~a~~~--~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
++++++ ++||||++++.+. ....+.+.|++||+++|+.|.++ +++|||||+||||.+|+|++++|++
T Consensus 98 ~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~ 177 (186)
T cd02900 98 PLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQ 177 (186)
T ss_pred cCCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHH
Confidence 999999 9999999886665 22245689999999999999887 8999999999999999999999999
Q ss_pred HHHHHHHHh
Q 029637 153 AISTVKEFA 161 (190)
Q Consensus 153 ~l~~i~~~~ 161 (190)
|+.++++|.
T Consensus 178 m~~ai~~f~ 186 (186)
T cd02900 178 MAFAIRLFN 186 (186)
T ss_pred HHHHHHHhC
Confidence 999999884
No 12
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.98 E-value=2.5e-31 Score=195.49 Aligned_cols=131 Identities=38% Similarity=0.534 Sum_probs=118.5
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcch-HHHHhhccccCCCCCCCCCcEEEccCCCCCCC
Q 029637 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDL-QKACYQIPEAQPRVRCPPGEARITPGFKLPVS 93 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l-~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~ 93 (190)
.|++++|||+++++ |+|||++|+.+.+++|++++|++++|+++ ++++++.. ++.+++|++.+|++++++++
T Consensus 1 ~i~~~~Gdi~~~~~----d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~ 72 (133)
T smart00506 1 ILKVVKGDITKPRA----DAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLA----GGECPVGTAVVTEGGNLPAK 72 (133)
T ss_pred CeEEEeCCCCcccC----CEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhc----CCCcCCccEEEecCCCCCCC
Confidence 37899999999875 99999999999999999999999999996 55555432 34789999999999999999
Q ss_pred eEEEEeCCccCCC-CChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 94 HVIHTVGPVFNFH-CNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 94 ~IiH~v~P~~~~~-~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
||+|+++|+|... ..+.+.|+++|++||+.|.+++++||+||+||||++|+|++++++++
T Consensus 73 ~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 73 YVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 9999999999986 36789999999999999999999999999999999999999999863
No 13
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=3.7e-31 Score=203.52 Aligned_cols=164 Identities=34% Similarity=0.573 Sum_probs=146.1
Q ss_pred eeeeeeCC--CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcE
Q 029637 5 VQTLSFST--KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEA 82 (190)
Q Consensus 5 ~~~~~~~~--~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~ 82 (190)
.+.|++.+ |..|.+|+||++.+++ |+|| +..++|++.+|++++|+++..||+.+. .|++|.+
T Consensus 22 l~~f~~~~~~~~~i~lwr~d~~~l~v----~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~------~c~tG~a 85 (200)
T KOG2633|consen 22 LEVFKIDKPDNGGISLWRGDGKTLEV----DAVV------LLGGKGVDEAIHRAAGPELPLECAYLH------GCRTGAA 85 (200)
T ss_pred cchhhccCccccCeeEeecccccccc----eeee------eccCcchhHHHHHhcCCcchHHHHhhc------CCCCCee
Confidence 34555544 8899999999999997 9998 778899999999999999999999874 5999999
Q ss_pred EEccCCCCCCCeEEEEeCCccCCCCCh-HHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 83 RITPGFKLPVSHVIHTVGPVFNFHCNP-EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 83 ~~t~~~~l~~~~IiH~v~P~~~~~~~~-~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
++|.+++|++++|||+++|.|..+..+ ...|..||++||..|.++.+++||||.|++|.+|||++.+|++.+++++.|+
T Consensus 86 k~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f 165 (200)
T KOG2633|consen 86 KSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFF 165 (200)
T ss_pred EecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987632 2369999999999999999999999999999999999999999999999998
Q ss_pred c-----CCCeEEEEecChHHHHHHHHHH
Q 029637 162 N-----DFKEVHFILFTDDIYNVWLKKA 184 (190)
Q Consensus 162 ~-----~l~~V~~v~~~~~~~~~f~~~~ 184 (190)
. .++.+.|+.+|.+.+..|.-++
T Consensus 166 ~~~~d~~l~~~~f~~~d~e~~~~~l~~~ 193 (200)
T KOG2633|consen 166 VKNKDSSLKTVPFLDYDSESYGAYLPEY 193 (200)
T ss_pred hhCCCceEEEEEEeccCCchHHHHHhhh
Confidence 6 3566889999999988876543
No 14
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.97 E-value=2.8e-30 Score=193.15 Aligned_cols=136 Identities=34% Similarity=0.553 Sum_probs=124.6
Q ss_pred eEEEEEcccce-eccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCC-C
Q 029637 15 SLKISKGDISR-WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP-V 92 (190)
Q Consensus 15 ~i~i~~GdI~~-~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~-~ 92 (190)
.|++++|||++ .+ +|+|||++|+.+.+++|++.+|++++|+++++++++..+. ..+++|++.+|++++++ +
T Consensus 1 ~i~~~~GDi~~~~~----~d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~---~~~~~G~~~~t~~~~~~~~ 73 (147)
T cd02749 1 KIKVVSGDITKPLG----SDAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKE---LELQVGEAVLTKGYNLDGA 73 (147)
T ss_pred CEEEEECCCCCCCC----CCEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhcc---cCCCCCCEEECcCCCCCcC
Confidence 37899999999 65 4999999999999999999999999999999999987632 23789999999999998 9
Q ss_pred CeEEEEeCCccCCCC--ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCC------ChHHHHHHHHHHH
Q 029637 93 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY------PPDEAATIAISTV 157 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~------p~~~~a~~~l~~i 157 (190)
+||+|+++|+|.... .+.+.|++||++||..|.+++++||+||.||||.+|+ |++.+++++++++
T Consensus 74 ~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 74 KYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 999999999998864 3578999999999999999999999999999999999 9999999999876
No 15
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.96 E-value=3e-29 Score=180.61 Aligned_cols=116 Identities=44% Similarity=0.678 Sum_probs=107.0
Q ss_pred EEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCCCeEEEEeCCccCCCC--ChHHHH
Q 029637 36 VSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHC--NPEDIL 113 (190)
Q Consensus 36 Vn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~IiH~v~P~~~~~~--~~~~~L 113 (190)
||++|+++.+++|++++|++++|++++++++++.+. ++++++|++++|++++++++||||+++|.|.... ++.+.|
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~--~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L 78 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKK--GGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEAL 78 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHH--HHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhcc--cCcccCCCeeeecCCCccccceEEEecceeccccccccHHHH
Confidence 899999999999999999999999999999887532 2368999999999999999999999999997433 678999
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
+++|++||+.|.+++++||+||+||||++|+|+++++++|
T Consensus 79 ~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 79 ESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999986
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.94 E-value=3.7e-29 Score=227.25 Aligned_cols=174 Identities=21% Similarity=0.274 Sum_probs=154.6
Q ss_pred CCCceEEEEE----cccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcch---HHHHhhcccc------------
Q 029637 11 STKTSLKISK----GDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDL---QKACYQIPEA------------ 71 (190)
Q Consensus 11 ~~~~~i~i~~----GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l---~~~~~~~~~~------------ 71 (190)
.++..+.+++ ||||..++ |+|||++|+.+.+++|++++|++++|+++ +++|+++..+
T Consensus 472 ~~~~~~~~~~~~~~~dit~~~~----d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~ 547 (725)
T PRK13341 472 QEGERLAILRDRLWSDITWQRH----DRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVL 547 (725)
T ss_pred hcccHHHHHHHHHhcccccccc----ceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccc
Confidence 3457788899 99998875 99999999999999999999999999999 8888764321
Q ss_pred --------CC----------CCCCCCCcEEEc------------cCCCCCCCeEEEEeCCccCCCCChHHHHHHHHHHHH
Q 029637 72 --------QP----------RVRCPPGEARIT------------PGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCL 121 (190)
Q Consensus 72 --------~~----------~~~~~~G~~~~t------------~~~~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L 121 (190)
+. .|.+++|++++| ++|+|+++||||+|||.|+.+.. .+.|.+||+++|
T Consensus 548 ~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L 626 (725)
T PRK13341 548 LDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSAL 626 (725)
T ss_pred cccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHH
Confidence 01 368999999999 99999999999999999987643 578999999999
Q ss_pred HHHHHcCCc----------eeeecccccCCCCCChHHHHHHHHHHHHHHhcC---CCeEEEEecChHHHHHHHHHHHHHh
Q 029637 122 SVGKANNIQ----------YIAFPAISCGVSQYPPDEAATIAISTVKEFAND---FKEVHFILFTDDIYNVWLKKAKELL 188 (190)
Q Consensus 122 ~~a~~~~~~----------sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~---l~~V~~v~~~~~~~~~f~~~~~~~~ 188 (190)
..|++++++ |||||+|+||++|||.+++++++++++++|+.. ..++.++.+++..+..|.+.+.++|
T Consensus 627 ~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 706 (725)
T PRK13341 627 LEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPDYRQALATNLEEERICNLDEELTRIL 706 (725)
T ss_pred HHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCcHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999999999964 3467799999999999999998876
Q ss_pred c
Q 029637 189 Q 189 (190)
Q Consensus 189 ~ 189 (190)
.
T Consensus 707 ~ 707 (725)
T PRK13341 707 G 707 (725)
T ss_pred h
Confidence 3
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.92 E-value=4e-24 Score=158.93 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=112.2
Q ss_pred eEEEEEccccee-ccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcc----hHHHHhhccccCCCCCCCCCcEEE-ccCC
Q 029637 15 SLKISKGDISRW-CVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPD----LQKACYQIPEAQPRVRCPPGEARI-TPGF 88 (190)
Q Consensus 15 ~i~i~~GdI~~~-~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~----l~~~~~~~~~~~~~~~~~~G~~~~-t~~~ 88 (190)
+|.+++|||++. ++ |+|||++|..+.+++|++.+|.+++ ++ +++.|++. .+..|++.+ +.++
T Consensus 1 ~i~~v~GDi~~~~~~----d~Iv~~~N~~~~mG~Gia~~i~~~~-p~~~~~~~~~~~~~-------~~~~G~~~~~~~~~ 68 (140)
T cd02901 1 MITYVKGDLLHAPEA----AALAHAVNCDGVMGKGIALQFKEKF-PEFVEEYRAACKKK-------ELLLGGVAVLERGS 68 (140)
T ss_pred CeEEEcCccccCCCC----CEEEEEEcCCCccChHHHHHHHHHC-cHHHHHHHHHHHhc-------CCCCCcEEEEecCC
Confidence 478999999998 64 9999999999999999999999985 44 44445443 345677655 5566
Q ss_pred CCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHH
Q 029637 89 KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 158 (190)
Q Consensus 89 ~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~ 158 (190)
++++++|+|+++|.|.......+.|+++++++++.|.+++++||+||.||||.+|+|++++++++.+.+.
T Consensus 69 ~~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~ 138 (140)
T cd02901 69 SLVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALA 138 (140)
T ss_pred CCCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhc
Confidence 7789999999999887655567999999999999999999999999999999999999999999887764
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.82 E-value=1.1e-18 Score=131.77 Aligned_cols=149 Identities=14% Similarity=0.083 Sum_probs=117.8
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEE-ccCCCCCCC
Q 029637 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI-TPGFKLPVS 93 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~-t~~~~l~~~ 93 (190)
.|++++|||++...+ ..++|||++|..+.||+|++.+|.++++ +..++.++.. .++..+.|++.+ +.+++.+.+
T Consensus 2 ~i~~v~GDl~~~~~~-~~~~i~h~~N~~g~mG~GIA~~~k~~~P-~~~~~y~~~~---~~~~~~lG~~~~~~~~~~~~~~ 76 (154)
T PHA02595 2 IVDYIKGDIVALFLQ-GKGNIAHGCNCFHTMGSGIAGQLAKAFP-QILEADKLTT---EGDVEKLGTFSVWEKYVGGHKA 76 (154)
T ss_pred eEEEECCcccccccC-CCceEEEeeCCCCcCChHHHHHHHHHcC-hHHHHHHHHh---cCCccccceEEEEEeeccCCCE
Confidence 478999999887421 2369999999999999999999999995 6666655543 134677899966 555666789
Q ss_pred eEEEEeCCccCCCC-ChHHHHHHHHHHHHHHHHHcCC-ceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEe
Q 029637 94 HVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNI-QYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFIL 171 (190)
Q Consensus 94 ~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~-~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~ 171 (190)
||+|.++. |+.+. .+.+.|++++++..+.+.+++. .||+||.||||.+|.|++.+.+++.+. ++.+ +|.++.
T Consensus 77 ~I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~----~~~~-~i~Vy~ 150 (154)
T PHA02595 77 YCFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA----TPDI-DIVVVE 150 (154)
T ss_pred EEEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh----cCCC-cEEEEE
Confidence 99999887 76654 3457799999999999999998 999999999999999999998887654 3344 366666
Q ss_pred cCh
Q 029637 172 FTD 174 (190)
Q Consensus 172 ~~~ 174 (190)
|++
T Consensus 151 ~~~ 153 (154)
T PHA02595 151 YEK 153 (154)
T ss_pred ecC
Confidence 654
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=99.60 E-value=6.3e-15 Score=119.05 Aligned_cols=144 Identities=20% Similarity=0.220 Sum_probs=91.8
Q ss_pred ceEEEEEcccceecc---------CCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchH-HHHhhccccCCCCCCCCCcEE
Q 029637 14 TSLKISKGDISRWCV---------DRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQ-KACYQIPEAQPRVRCPPGEAR 83 (190)
Q Consensus 14 ~~i~i~~GdI~~~~~---------~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~-~~~~~~~~~~~~~~~~~G~~~ 83 (190)
..+++..|++..+.- +...|+||.|+||...++||.+.+|.++.|.+-. ..+++.. ..+..++|++-
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l---~~~y~pvGs~t 118 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQL---GERYHPVGSCT 118 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHT---TTS---TT--E
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHH---hccccCCCeeE
Confidence 448899998875531 1247999999999999999999999999886543 3344432 23357889887
Q ss_pred EccCC----------CCCCCeEEEEeCCc------cCCCC---ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCC
Q 029637 84 ITPGF----------KLPVSHVIHTVGPV------FNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 144 (190)
Q Consensus 84 ~t~~~----------~l~~~~IiH~v~P~------~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~ 144 (190)
+.+.. +-.++||+|+++.. |.... ...+.+.++++|.+..+. ..+.+|.+|.||||.+|+
T Consensus 119 vIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV 197 (280)
T PF14519_consen 119 VIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGV 197 (280)
T ss_dssp EEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT--
T ss_pred EEECchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCC
Confidence 76542 24578999998733 33221 234678889999998774 579999999999999999
Q ss_pred ChHHHHHHHHHHHHHHh
Q 029637 145 PPDEAATIAISTVKEFA 161 (190)
Q Consensus 145 p~~~~a~~~l~~i~~~~ 161 (190)
|++.+|+.|+-|++-|.
T Consensus 198 ~p~~sAk~M~fAl~l~~ 214 (280)
T PF14519_consen 198 PPEISAKQMAFALRLYN 214 (280)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999986
No 20
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=99.08 E-value=7.3e-09 Score=77.90 Aligned_cols=137 Identities=14% Similarity=0.046 Sum_probs=101.0
Q ss_pred eEEEEEcccceeccC-CCCcEEEEcCCCCCCCC-chHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCC---
Q 029637 15 SLKISKGDISRWCVD-RSSDAIVSPTNEILLLG-GFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK--- 89 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~-~~~d~IVn~~n~~~~~~-~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~--- 89 (190)
.|+.++||+++...+ .+...|++.+|.....+ ||++.+|.++. |+..+..+..- ..+.+..|++.+.+...
T Consensus 1 ~I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~---~~~dl~LG~~~li~v~~~~~ 76 (152)
T cd03331 1 SVRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAG---KMKDLHLGDLHLFPIDDKNS 76 (152)
T ss_pred CeEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHH---hcCCCccccEEEEEeccccC
Confidence 378999999997631 12359999999999888 68999999999 55544433311 12357789998776422
Q ss_pred --CCCCeEEEEeCCccCCCC----ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHH
Q 029637 90 --LPVSHVIHTVGPVFNFHC----NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAIST 156 (190)
Q Consensus 90 --l~~~~IiH~v~P~~~~~~----~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~ 156 (190)
-...+|...+++.+.... -+...|++|+.++-..|.+ +--||.+|-||+|.+|.|++..-+++-+.
T Consensus 77 ~~~~~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k~ 148 (152)
T cd03331 77 RLKGPDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRKY 148 (152)
T ss_pred CCCCCeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence 124688888888765442 2568889999988888865 45889999999999999999997775443
No 21
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=98.07 E-value=2.7e-05 Score=63.67 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=104.4
Q ss_pred CceEEEEEcccceecc------CCCCcEEEEcCCCCCCCCchHHH------HHHHHcCc--ch--HHHHhhccccCCCCC
Q 029637 13 KTSLKISKGDISRWCV------DRSSDAIVSPTNEILLLGGFTAA------AIHEAAGP--DL--QKACYQIPEAQPRVR 76 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~------~~~~d~IVn~~n~~~~~~~gv~~------ai~~~~G~--~l--~~~~~~~~~~~~~~~ 76 (190)
...|+|+.+|-.+.-. ...--++.|.+|.....||=+.+ +|.+..+. .| ..+....- .+.+.+
T Consensus 55 ~t~i~V~~~dtl~aA~~L~~~~~~~~v~vLNfASa~~PGGG~l~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~-r~~~~p 133 (266)
T TIGR02452 55 RTELKVVNESTLHAAVRLKESYFAGKVALLNFASAKNPGGGFLNGAQAQEESLCRASALYPCLIKFNEYYEFH-RHQRSP 133 (266)
T ss_pred CceEEEEcCCHHHHHHHHHhhccCCCeEEEeccCcCCCCCCcccCccchHHHHHHhccHHHHHhcchhHhhhh-cccCCC
Confidence 4679999998532211 01135888998887754421211 22222221 12 11111110 011234
Q ss_pred CCCCcEEEcc--------CCC-CCCCe---EEEEeCCccCCC-----C---ChHHHHHHHHHHHHHHHHHcCCceeeecc
Q 029637 77 CPPGEARITP--------GFK-LPVSH---VIHTVGPVFNFH-----C---NPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (190)
Q Consensus 77 ~~~G~~~~t~--------~~~-l~~~~---IiH~v~P~~~~~-----~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (190)
+..-.++.++ .+. |.-.+ +|-++.|.+... . ...+.+++-++.+|..|..+|.+++.+-+
T Consensus 134 l~~~~~IYSP~V~vFR~d~g~~l~~p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA 213 (266)
T TIGR02452 134 LYSDRAIYSPNVPVFRNDDGDLLNEPFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGA 213 (266)
T ss_pred CCCCceEECCCcEEEECCCCCcccCCceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 4444444443 223 33222 455556766421 1 12478889999999999999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHH---HHhcCCCeEEEEecChH----HHHHHH
Q 029637 137 ISCGVSQYPPDEAATIAISTVK---EFANDFKEVHFILFTDD----IYNVWL 181 (190)
Q Consensus 137 lgtG~~g~p~~~~a~~~l~~i~---~~~~~l~~V~~v~~~~~----~~~~f~ 181 (190)
+|||.|+.|+.++|+...+.+. +|...++.|.|-++|.. .+++|.
T Consensus 214 ~GCG~f~N~p~~VA~~f~evL~~~~ef~g~F~~VvFAI~d~~~~~~~~~~F~ 265 (266)
T TIGR02452 214 WGCGVFGNDPAEVAKIFHDLLSPGGIFKGRIKEVVFAILDRHGQSTNTQIFR 265 (266)
T ss_pred ccccccCCCHHHHHHHHHHHhccCccccCceeEEEEEEeCCCCCCcHHhHhh
Confidence 9999999999999999988887 67778999999999843 556664
No 22
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=97.34 E-value=0.0039 Score=55.29 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=109.7
Q ss_pred cEEEEcCCCCCCCCchHHHHHHHHcCc-------chHHHHhhc----c---------c-----c------------CCCC
Q 029637 33 DAIVSPTNEILLLGGFTAAAIHEAAGP-------DLQKACYQI----P---------E-----A------------QPRV 75 (190)
Q Consensus 33 d~IVn~~n~~~~~~~gv~~ai~~~~G~-------~l~~~~~~~----~---------~-----~------------~~~~ 75 (190)
-++|--++.+.....|..+.+.+.|-. .+.+...++ . . . ....
T Consensus 291 sg~Vllvd~~~~~~~~~~~~f~~~C~~sTefHF~~i~~Ql~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (510)
T PF10154_consen 291 SGLVLLVDNRINSYSGIKKDFARVCEQSTEFHFPSIDEQLEKIQESVLYARRQRESRSKSQIDSNNSNGGSEGKPKRGSS 370 (510)
T ss_pred eeEEEEeCCCcccccchHHHHHHHHHhhcccCcCCHHHHHHHHHHHHhhhhhhhhcccccccCcccccccCCcccccCCC
Confidence 467777777787888888888888843 233322221 0 0 0 0124
Q ss_pred CCCCCcEEEccCCCCCC-CeEEEEeCCc-cCCCC-ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCCh-----H
Q 029637 76 RCPPGEARITPGFKLPV-SHVIHTVGPV-FNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP-----D 147 (190)
Q Consensus 76 ~~~~G~~~~t~~~~l~~-~~IiH~v~P~-~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~-----~ 147 (190)
.+.+||+++|.-.||.. --|+|.|.-. .+.+. ++...+-..++|+|+.|.++++.+|.+|++-+....-.. -
T Consensus 371 ~l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~ 450 (510)
T PF10154_consen 371 TLKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCL 450 (510)
T ss_pred cCCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHH
Confidence 56899999999999864 5677888542 22222 456788899999999999999999999999987543322 2
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEEecC---hHHHHHHHHHHHHHhc
Q 029637 148 EAATIAISTVKEFAN--------DFKEVHFILFT---DDIYNVWLKKAKELLQ 189 (190)
Q Consensus 148 ~~a~~~l~~i~~~~~--------~l~~V~~v~~~---~~~~~~f~~~~~~~~~ 189 (190)
.=|+..+..++-|+- ..+.|.|++.+ ++.|..+...++..|+
T Consensus 451 ~Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr 503 (510)
T PF10154_consen 451 KRAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFR 503 (510)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhc
Confidence 235667788887762 35789998765 4688888888888775
No 23
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.0028 Score=49.95 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHH---hcCCCeEEEEecChH--HHHHHHHHH
Q 029637 110 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF---ANDFKEVHFILFTDD--IYNVWLKKA 184 (190)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~---~~~l~~V~~v~~~~~--~~~~f~~~~ 184 (190)
.+.|..-.+.+|.+|..++.+.+.+-+.|||.|+-+|..+|+++.+.+.+- ...++.|.|-++|.+ +..+|.+++
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g~fkhv~FavlD~n~~~~~iFr~el 278 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLGDFKHVVFAVLDRNMTIVNIFRKEL 278 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhcccceEEEEEecCCchHHHHHHHHH
Confidence 367888899999999999999999999999999999999999999888654 457899999888844 778888877
Q ss_pred HHH
Q 029637 185 KEL 187 (190)
Q Consensus 185 ~~~ 187 (190)
..+
T Consensus 279 e~f 281 (285)
T COG4295 279 EYF 281 (285)
T ss_pred Hhh
Confidence 654
No 24
>PHA03033 hypothetical protein; Provisional
Probab=94.81 E-value=0.12 Score=37.36 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=56.9
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHH-HHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCCC
Q 029637 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTA-AAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVS 93 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~-~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~ 93 (190)
++.-+.|+|.++--..+...++......+.||.|++ -.+.+..|. .++.++. ...+|++.+-.-.+ |
T Consensus 2 ~i~eIng~~~DLFS~p~~~sLaHCIsAD~~MGaGIA~v~FKkkyg~--V~eLk~Q-------kk~~GeVAvLk~d~---R 69 (142)
T PHA03033 2 KIEYINENIWDFLSDDDNINIISFISADFILCKDDCFIYIKKKYNS--IKELKKQ-------KKKKGEVAYIYKNN---K 69 (142)
T ss_pred ceEEecCcchhhhcCCCcceEeeeehhhhhcCCChhhhhHHHHhCC--HHHHHhh-------ccCCCeEEEEecCC---E
Confidence 456788955554433456788888888999999999 777777776 3335443 35678887655554 8
Q ss_pred eEEEEeCCccCCC
Q 029637 94 HVIHTVGPVFNFH 106 (190)
Q Consensus 94 ~IiH~v~P~~~~~ 106 (190)
||+..++-.|-++
T Consensus 70 yIYYLITKdyie~ 82 (142)
T PHA03033 70 YIIYIIIADYIED 82 (142)
T ss_pred EEEEEEeHHHHHH
Confidence 9999999877654
No 25
>PHA00684 hypothetical protein
Probab=82.27 E-value=17 Score=26.41 Aligned_cols=100 Identities=16% Similarity=0.089 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCCCeEEEEeCCccCCCCChHHHH
Q 029637 34 AIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDIL 113 (190)
Q Consensus 34 ~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~IiH~v~P~~~~~~~~~~~L 113 (190)
+-|-.+|....+++|.++.-.+..|-..= .+.=..|+. |-|=+.. .+....-+.+.|
T Consensus 2 IFVFGSNlaG~Hg~GAA~~A~~~~GA~~G-----------~g~G~~G~S-----------YAIPT~~-~~~l~~~~l~~I 58 (128)
T PHA00684 2 IFVFGSNLAGAHGAGAAAAAHKEHGAAWG-----------VGEGRTGHS-----------YAIPTKA-GTVISTLSLPDI 58 (128)
T ss_pred eEEecCCccccccchHHHHHHHHhChhhc-----------cccCCCCce-----------eeccccc-CCccccccHHHH
Confidence 45788899888999988866665543211 001112222 2111110 111111245899
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAIST 156 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~ 156 (190)
+..+..-+..|.++--.+.-++.||||+.|+..++.|..+.++
T Consensus 59 ~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~a 101 (128)
T PHA00684 59 GAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRDA 101 (128)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999887654
No 26
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=62.46 E-value=19 Score=30.55 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=32.6
Q ss_pred CCCeEEEEeCCccCCCCC-hHHHH---HHHHHHHHHHHHHcC-Cceeeeccc
Q 029637 91 PVSHVIHTVGPVFNFHCN-PEDIL---RSAYKNCLSVGKANN-IQYIAFPAI 137 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~-~~~~L---~~~~~~~L~~a~~~~-~~sIa~P~l 137 (190)
+|+.|+|++.|.-....+ +.+.+ .+...|+|+.|.+.+ ++-|.+..=
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS 129 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSS 129 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEecc
Confidence 599999999996554432 21233 477788888888777 777777543
No 27
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=59.79 E-value=72 Score=26.70 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
...+.++++.|.+.|++.|++=++|+.++.=|++++...
T Consensus 97 ~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~L 135 (296)
T PRK14827 97 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFL 135 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHH
Confidence 456777888888999999999999999999999887544
No 28
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=58.34 E-value=32 Score=28.19 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=30.4
Q ss_pred CCCeEEEEeCCccCCCC-ChH---HHHHHHHHHHHHHHHHcCCceeeec
Q 029637 91 PVSHVIHTVGPVFNFHC-NPE---DILRSAYKNCLSVGKANNIQYIAFP 135 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~-~~~---~~L~~~~~~~L~~a~~~~~~sIa~P 135 (190)
+|+.|||++.|.-..+. ..+ +.=...-+++|+.|.+.+++.+.+.
T Consensus 66 g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 66 GVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 47999999987433221 111 2223777899999999998877664
No 29
>PLN02214 cinnamoyl-CoA reductase
Probab=57.57 E-value=21 Score=29.90 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=28.8
Q ss_pred CCCeEEEEeCCccCCCCChHHHH---HHHHHHHHHHHHHcCCceeeecc
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDIL---RSAYKNCLSVGKANNIQYIAFPA 136 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L---~~~~~~~L~~a~~~~~~sIa~P~ 136 (190)
.++.|||+++|.... ....+ .....++++.|.+.+.+.+.+..
T Consensus 81 ~~d~Vih~A~~~~~~---~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~S 126 (342)
T PLN02214 81 GCDGVFHTASPVTDD---PEQMVEPAVNGAKFVINAAAEAKVKRVVITS 126 (342)
T ss_pred cCCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 378999999986432 22223 34567888888888887666543
No 30
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=54.05 E-value=27 Score=28.11 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 113 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 113 L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
=...+++++..|.+.|++.+++=++|+.++.=|++++...|
T Consensus 35 G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm 75 (230)
T PRK14837 35 GLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM 75 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 34667777778888999999999999999999999987553
No 31
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.23 E-value=20 Score=31.04 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=45.3
Q ss_pred CCCCCcEEEccCCCCCCC-eEEEEeCC-ccCCCC-ChHHHHHHHHHHHHHHHHHcCCceeeecccccCC
Q 029637 76 RCPPGEARITPGFKLPVS-HVIHTVGP-VFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV 141 (190)
Q Consensus 76 ~~~~G~~~~t~~~~l~~~-~IiH~v~P-~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~ 141 (190)
.+-+|++.++....+.-- .++|.+.- ....+. +....--..++|+++.|..+++++|.+|+|-..-
T Consensus 416 nllP~eal~qd~sc~seihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLLid~ 484 (598)
T KOG4506|consen 416 NLLPGEALIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLLIDD 484 (598)
T ss_pred hcCchhhhhcCccccchhheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEEecC
Confidence 355788888877666433 45676543 222222 3444556789999999999999999999987543
No 32
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=50.09 E-value=37 Score=27.27 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
...+++++..|.+.|++.+.+=++|+.++.=|++++...| +-+.+++
T Consensus 29 ~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm-~L~~~~l 75 (226)
T TIGR00055 29 VKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLM-ELFEKKL 75 (226)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHH-HHHHHHH
Confidence 4566777777888999999999999999999998886543 3444433
No 33
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=50.01 E-value=36 Score=27.18 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
...+++++..|.+.|++.+++=++|+.++.=|++++... ++-+..++
T Consensus 30 ~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~L-m~l~~~~l 76 (221)
T cd00475 30 AEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFL-MELFRDVL 76 (221)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHH-HHHHHHHH
Confidence 456667777778899999999999999999999988654 34444443
No 34
>PRK07475 hypothetical protein; Provisional
Probab=47.82 E-value=76 Score=25.51 Aligned_cols=97 Identities=10% Similarity=0.106 Sum_probs=56.3
Q ss_pred CCCCCcEEEccCCCCCCCeEEEEe---CCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeeccccc---------CCCC
Q 029637 76 RCPPGEARITPGFKLPVSHVIHTV---GPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC---------GVSQ 143 (190)
Q Consensus 76 ~~~~G~~~~t~~~~l~~~~IiH~v---~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgt---------G~~g 143 (190)
+..+|++.--.++. +.-.++.+ .|.---. .....+...+.+..+..++.|.+.|++|+ ++ ...+
T Consensus 26 p~~pgd~~~~~t~~--~pv~~~~v~g~~~~~~~~-~~~~~~~~~l~~aa~~L~~~G~d~I~~~C-gt~~~~~~~l~~~~~ 101 (245)
T PRK07475 26 PRIPGDVGNAATWP--FPVRYKVVRGATPERVVE-GDDPSLLDAFVAAARELEAEGVRAITTSC-GFLALFQRELAAALG 101 (245)
T ss_pred CCCCCCCCCcccCC--cCEEEEeeCCCCHHHHhc-CCCccHHHHHHHHHHHHHHcCCCEEEech-HHHHHHHHHHHHHcC
Confidence 44578775444444 34444443 2211000 11234566666667777778999999998 32 2345
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEEEEecChHH
Q 029637 144 YPPDEAATIAISTVKEFANDFKEVHFILFTDDI 176 (190)
Q Consensus 144 ~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~ 176 (190)
.|.-.++...+.+++......++|-++..+...
T Consensus 102 VPv~~ss~~~v~~l~~~~~~~~kIGILtt~~t~ 134 (245)
T PRK07475 102 VPVATSSLLQVPLIQALLPAGQKVGILTADASS 134 (245)
T ss_pred CCEeccHHHHHHHHHHhccCCCeEEEEeCCchh
Confidence 666666666666666555445677777776663
No 35
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=47.31 E-value=27 Score=24.24 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=32.3
Q ss_pred CeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecc
Q 029637 93 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (190)
..|.|+..|.|-.+. -.=+..+..+|+.|.+.+++.|-+++
T Consensus 40 i~i~HT~V~d~lrGq---Gia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQ---GIAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCC---cHHHHHHHHHHHHHHHcCCeEcccch
Confidence 577899999876654 34456788899999999999888765
No 36
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.86 E-value=44 Score=26.91 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 113 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 113 L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
=.+.++++++.|.+.|++.+++=++|+.++.=|++++...|
T Consensus 32 G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm 72 (233)
T PRK14841 32 GAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLM 72 (233)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHH
Confidence 34666777788888999999999999999999999886553
No 37
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.66 E-value=46 Score=27.00 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
.+.+.+++..|.+.|++.|++=++|+.++.=|++++... ++.+..++
T Consensus 38 ~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~L-m~L~~~~l 84 (241)
T PRK14842 38 ANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSI-FGLLVEFI 84 (241)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHH-HHHHHHHH
Confidence 456677778888899999999999999999999888644 44444443
No 38
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.25 E-value=47 Score=26.76 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
...++++++.|.+.|++.+++=++|+.++.=|++++...| +-+.+++
T Consensus 34 ~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm-~L~~~~l 80 (233)
T PRK14833 34 VKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM-KLLKKYL 80 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHH-HHHHHHH
Confidence 3556677777778999999999999999999999886553 4444443
No 39
>CHL00194 ycf39 Ycf39; Provisional
Probab=43.67 E-value=1.8e+02 Score=23.83 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=28.6
Q ss_pred CCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeee
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 134 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 134 (190)
.++.|||++++.+.......+.=...-.++++.|.+.|++.+.+
T Consensus 64 g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 64 GVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 46899999876654322111112345678888888899887765
No 40
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.50 E-value=52 Score=26.85 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
.+.+++++..|.+.|++.|++=++|+.++.=|++++...|
T Consensus 52 ~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm 91 (250)
T PRK14840 52 AKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELF 91 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 3566677777788999999999999999999999986554
No 41
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=43.43 E-value=1e+02 Score=20.89 Aligned_cols=25 Identities=8% Similarity=-0.113 Sum_probs=18.9
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+-|.+.+..+.+...+||+
T Consensus 50 v~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 50 LYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHcC
Confidence 3556666777888888888888885
No 42
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=43.20 E-value=1.6e+02 Score=25.27 Aligned_cols=45 Identities=20% Similarity=0.153 Sum_probs=29.0
Q ss_pred CCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeec
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P 135 (190)
+++.|||++++.+....+..+.-.....++++.|.+.+.+.+.+.
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 479999998875432222112223456688888888898877654
No 43
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=42.79 E-value=60 Score=24.51 Aligned_cols=60 Identities=10% Similarity=0.228 Sum_probs=38.0
Q ss_pred CCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEE----EecChHHHHHHHHHHHHHhc
Q 029637 128 NIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHF----ILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 128 ~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~----v~~~~~~~~~f~~~~~~~~~ 189 (190)
.-.||.||+=|..-.-.+..++-. ++..+.+|.+-+++=.+ -..+++.|....+. ++|+.
T Consensus 38 e~~svIFpLSGvAFLL~d~~~~~~-~l~ki~kF~~ihrNsflvL~aalhg~~ew~~m~~i-qRFLG 101 (162)
T PF15162_consen 38 EPGSVIFPLSGVAFLLMDAQECFM-FLAKIEKFIDIHRNSFLVLSAALHGPEEWKLMFRI-QRFLG 101 (162)
T ss_pred cCCeEEEEcccceeeEeccHHHhh-HHHHHHHHHhccCCceEEeehhhcCHHHHHHHHHH-HHHhc
Confidence 345777777777777676666665 67777777775554222 23455567776666 66653
No 44
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.54 E-value=56 Score=26.48 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
...+.+++..|.+.|++.+++=++|+.++.=|++++... ++-+..++
T Consensus 39 ~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~L-m~L~~~~l 85 (239)
T PRK14839 39 VEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGL-MRLLRAYL 85 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHH-HHHHHHHH
Confidence 456677777888899999999999999999999988654 34344333
No 45
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.25 E-value=54 Score=26.77 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
.+.+++++..|.+.|++.+++=++|+.++.=|++++...|
T Consensus 48 ~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm 87 (253)
T PRK14832 48 ARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLM 87 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 4667777888888999999999999999999999886554
No 46
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.24 E-value=57 Score=26.44 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
.+.+.+++..|.+.|++.|++=++|++++.=|.+++...
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~l 82 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFL 82 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHH
Confidence 456677777778899999999999999999999877644
No 47
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.90 E-value=57 Score=26.47 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
...+++++..|.+.|++.+++=++|+.++.=|+++.... ++.+.+++
T Consensus 40 ~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~L-m~l~~~~l 86 (242)
T PRK14838 40 AETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAAL-MSLLLDSI 86 (242)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHH-HHHHHHHH
Confidence 456677777788899999999999999999999888644 44444444
No 48
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.70 E-value=54 Score=26.71 Aligned_cols=39 Identities=23% Similarity=0.124 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
...+.+++..|.+.|++.+++=++|++++.=|.++....
T Consensus 50 ~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~L 88 (249)
T PRK14831 50 VDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFL 88 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHH
Confidence 456677777888899999999999999999998887543
No 49
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=40.71 E-value=53 Score=26.99 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 111 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 111 ~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
+.=...+..+|+.|.+.|++.|++=++|+.++.=|+.++-..|
T Consensus 63 ~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM 105 (271)
T KOG1602|consen 63 EAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLM 105 (271)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHH
Confidence 3445667788899999999999999999999999999886554
No 50
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.26 E-value=66 Score=25.84 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
.+.+.+++..|.+.|++.+.+=++|+.++.=|+++.... ++.+..++
T Consensus 23 ~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~L-m~l~~~~l 69 (229)
T PRK10240 23 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL-MELFVWAL 69 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHH-HHHHHHHH
Confidence 355667777777899999999999999999888887644 44444443
No 51
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.59 E-value=71 Score=26.03 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
.+.+.+++..|.+.|++.|++=++|+.++.=|++++...
T Consensus 44 ~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~L 82 (249)
T PRK14834 44 VEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDL 82 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHH
Confidence 455667777778899999999999999999999888654
No 52
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=39.50 E-value=2.1e+02 Score=25.18 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHcCCceeee-cccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEe
Q 029637 112 ILRSAYKNCLSVGKANNIQYIAF-PAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFIL 171 (190)
Q Consensus 112 ~L~~~~~~~L~~a~~~~~~sIa~-P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~ 171 (190)
.=.+.+.+.|+.|.+.|+..|.| |.-.. ...+.+++-+.+.+++.+-+..-..|.+++
T Consensus 215 kSv~~~~~eL~rA~~LGa~~VV~HPGs~~--~~~~~ee~i~~i~e~L~~~la~~~gV~IlL 273 (413)
T PTZ00372 215 KSYDAFLDDLQRCEQLGIKLYNFHPGSTV--GQCSKEEGIKNIADCINKAHEETKSVIIVL 273 (413)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCcCC--CCCCHHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 33567888999999999999999 53322 344556677777777766544222344444
No 53
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=39.38 E-value=60 Score=27.16 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=29.5
Q ss_pred CCCeEEEEeCCccCCC--CChHHHH---HHHHHHHHHHHHHcCCceeeecc
Q 029637 91 PVSHVIHTVGPVFNFH--CNPEDIL---RSAYKNCLSVGKANNIQYIAFPA 136 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~--~~~~~~L---~~~~~~~L~~a~~~~~~sIa~P~ 136 (190)
.+++|||++++..... .+..... ...-.++|+.|.+.+++.+.++.
T Consensus 90 ~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 90 NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 3689999998532211 1122222 24556888888889998888764
No 54
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.30 E-value=68 Score=26.23 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
.+.+.++++.|.+.|++.|++=++|+.++.=|.++....|
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm 96 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLL 96 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHH
Confidence 4566777788888999999999999999999998876554
No 55
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.25 E-value=76 Score=26.27 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
.+.+.+++..|.+.|++.|++=++|+.++.=|++++...
T Consensus 71 ~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~L 109 (275)
T PRK14835 71 VQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETL 109 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHH
Confidence 456677777888899999999999999999999888655
No 56
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=38.16 E-value=2.2e+02 Score=23.61 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=41.3
Q ss_pred CCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeee-cccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF-PAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~-P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
.+.|+|+...|.- +..+.=.+++...++.|...|++.|.| |.-- .+-+++++-+.+.+++.+-+
T Consensus 67 HApYlINl~s~~~----e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG~~---~~~~~e~~l~~i~~~Ln~~~ 131 (280)
T COG0648 67 HAPYLINLASPEK----EKVEKSIERLIDEIDRCEQLGAKLLVFHPGSY---LGQGKEEGLNRIAEALNELL 131 (280)
T ss_pred ecceeecCCCCCH----HHHHHHHHHHHHHHHHHHHcCCcEEEECCccc---cCCCHHHHHHHHHHHHHHHh
Confidence 3568888877731 112333466667777888999999999 4222 22337788777777775554
No 57
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=36.66 E-value=63 Score=25.66 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHH
Q 029637 115 SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 160 (190)
Q Consensus 115 ~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~ 160 (190)
+.+++++..|.+.|++.+++=++|+.++.=|+++....| +.+..+
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm-~l~~~~ 69 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALM-DLFERY 69 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHH-HHHHHH
Confidence 455677777778999999999999999999999886553 333333
No 58
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=36.49 E-value=73 Score=27.00 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
...++++++.|.+.|++.+.+=++|+.++.=|++++.-.|
T Consensus 49 ~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm 88 (322)
T PTZ00349 49 SKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLF 88 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHH
Confidence 4667778888889999999999999999999999986554
No 59
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.37 E-value=1.3e+02 Score=26.76 Aligned_cols=84 Identities=7% Similarity=-0.012 Sum_probs=54.0
Q ss_pred ccCCCCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChH---HHHHHHHHHHHHHh
Q 029637 85 TPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPD---EAATIAISTVKEFA 161 (190)
Q Consensus 85 t~~~~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~---~~a~~~l~~i~~~~ 161 (190)
..+.+-.|.| |+.|.-++...+ ..+.+.+.++-+++ +.|++-|.+...-++.+|.+.. ....-+++.+.+ .
T Consensus 151 ~eGCn~~Ctf---CiiP~~RG~~rS-r~~e~Il~ev~~Lv-~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I 224 (437)
T COG0621 151 QEGCNKFCTF---CIIPYARGKERS-RPPEDILKEVKRLV-AQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-I 224 (437)
T ss_pred hcCcCCCCCe---eeeeccCCCccC-CCHHHHHHHHHHHH-HCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-C
Confidence 3455555554 666777765421 33444455554443 5799999999999999999874 333445666655 5
Q ss_pred cCCCeEEEEecCh
Q 029637 162 NDFKEVHFILFTD 174 (190)
Q Consensus 162 ~~l~~V~~v~~~~ 174 (190)
+.+..|+|-...+
T Consensus 225 ~G~~riR~~~~~P 237 (437)
T COG0621 225 PGIERIRFGSSHP 237 (437)
T ss_pred CCceEEEEecCCc
Confidence 5677888865544
No 60
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=34.91 E-value=1.1e+02 Score=26.22 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCceeee--cccccCC-CCCChHHHHHHH
Q 029637 110 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGV-SQYPPDEAATIA 153 (190)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~--P~lgtG~-~g~p~~~~a~~~ 153 (190)
...|...+++.++.+...|++.|.+ |+||+|. .++..+.+.+++
T Consensus 141 a~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al 187 (344)
T PRK06052 141 AKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISAL 187 (344)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHH
Confidence 3667788888888889999999999 9999996 566666665553
No 61
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=32.76 E-value=2.4e+02 Score=22.19 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc
Q 029637 111 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 162 (190)
Q Consensus 111 ~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~ 162 (190)
....+.+++++..|.+.|.+.|.++. |......+.++.-+.+++.+++..+
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~i~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~ 130 (254)
T TIGR03234 80 EEFREGVALAIAYARALGCPQVNCLA-GKRPAGVSPEEARATLVENLRYAAD 130 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECc-CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999987653 2223445566666666666666553
No 62
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=32.44 E-value=31 Score=30.54 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=20.3
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPT 39 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~ 39 (190)
+.+|.|++||+.+++..+++|+||+=-
T Consensus 240 ~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 240 GDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp TTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred CCeEEEEeCcccCCCCCCceeEEEEec
Confidence 356999999999999777899999874
No 63
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=32.28 E-value=74 Score=23.44 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=28.6
Q ss_pred CCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeee
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 134 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 134 (190)
+++.|+|+++|.+. + ...++++++.+.+.+.+.+.+
T Consensus 60 ~~d~vi~~~~~~~~------~--~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPK------D--VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTT------H--HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhcc------c--cccccccccccccccccccee
Confidence 58999999988664 1 677788888888889877766
No 64
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=31.91 E-value=1.6e+02 Score=20.54 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=18.3
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhcC
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQG 190 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~~ 190 (190)
-++.+.+.+.+.+..+.+.++++|++
T Consensus 67 v~~~~yl~d~~~~~~~~~v~~~~f~~ 92 (121)
T PF01042_consen 67 VKVTVYLTDMSDFPAVNEVWKEFFPD 92 (121)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHSTS
T ss_pred eeeeehhhhhhhhHHHHHHHHHHhcc
Confidence 45556666777788888888887753
No 65
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=31.59 E-value=1.6e+02 Score=23.84 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=27.4
Q ss_pred CCCeEEEEeCCccCCCCChH-HHHH---HHHHHHHHHHHHc-CCceeeec
Q 029637 91 PVSHVIHTVGPVFNFHCNPE-DILR---SAYKNCLSVGKAN-NIQYIAFP 135 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~-~~L~---~~~~~~L~~a~~~-~~~sIa~P 135 (190)
.+++|||+++|......+.. ..++ ....++|+.|.+. +.+.+.+.
T Consensus 76 ~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~ 125 (322)
T PLN02662 76 GCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVT 125 (322)
T ss_pred CCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 36899999998543211222 2222 4556777777766 77776654
No 66
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.54 E-value=93 Score=25.41 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHH
Q 029637 110 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 160 (190)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~ 160 (190)
...-.+.+++++..|.+.|++.+.+=++|+.++.=|.++.... ++-+..+
T Consensus 40 H~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~L-m~l~~~~ 89 (253)
T PRK14836 40 HRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSAL-MELFLKA 89 (253)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHH-HHHHHHH
Confidence 4566678888889999999999999999999999998877554 3334333
No 67
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=30.53 E-value=1.8e+02 Score=19.79 Aligned_cols=25 Identities=4% Similarity=-0.153 Sum_probs=17.3
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+.|.+.+..+.+...++|+
T Consensus 53 vk~~vyl~d~~~~~~~~~~~~~~f~ 77 (105)
T cd06150 53 LSATIWLADMADFAAMNAVWDAWVP 77 (105)
T ss_pred EEEEEEEccHHHHHHHHHHHHHHcC
Confidence 3455556677777788777777775
No 68
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.22 E-value=1.1e+02 Score=24.92 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHH
Q 029637 110 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 153 (190)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~ 153 (190)
...-.+.+.+++..|.+.|++.+++=++|+.++.=|.++....|
T Consensus 48 h~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm 91 (251)
T PRK14830 48 HKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLM 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH
Confidence 45566788888999999999999999999999999998886654
No 69
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=30.02 E-value=1.9e+02 Score=20.17 Aligned_cols=51 Identities=6% Similarity=-0.023 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEecChHHHHHHHHHHHHHh
Q 029637 109 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELL 188 (190)
Q Consensus 109 ~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~~ 188 (190)
-+++.++++.|+.....+.|. ..+ .+-++.+.+.+.+.+..+.+.+.++|
T Consensus 42 ~~~Q~~~~~~ni~~~L~~aG~---------------~~~---------------dVvk~~vyl~d~~~~~~~~~~~~~~f 91 (119)
T cd06154 42 AYEQTRQCLEIIEAALAEAGA---------------SLE---------------DVVRTRMYVTDIADFEAVGRAHGEVF 91 (119)
T ss_pred HHHHHHHHHHHHHHHHHHcCC---------------CHH---------------HEEEEEEEECCHHHHHHHHHHHHHHc
Confidence 457788888888776665542 111 12344555566677777777777777
Q ss_pred c
Q 029637 189 Q 189 (190)
Q Consensus 189 ~ 189 (190)
+
T Consensus 92 ~ 92 (119)
T cd06154 92 G 92 (119)
T ss_pred C
Confidence 5
No 70
>PTZ00325 malate dehydrogenase; Provisional
Probab=29.79 E-value=1.6e+02 Score=24.80 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=33.6
Q ss_pred CCCeEEEEeCCccCCCCChHHHHHH---HHHHHHHHHHHcCCceeee
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDILRS---AYKNCLSVGKANNIQYIAF 134 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~sIa~ 134 (190)
.++-|+|++++.-..+.+..+.+.. .++++++...+.+.+.+.+
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 5899999999865443333466766 8999999999999888776
No 71
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=29.00 E-value=2.1e+02 Score=20.28 Aligned_cols=25 Identities=4% Similarity=0.050 Sum_probs=17.2
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+.|.+.+..+.+.+.++|.
T Consensus 72 vk~~vyl~d~~~~~~~~~v~~~~f~ 96 (129)
T PRK11401 72 IKMTVFITDLNDFATINEVYKQFFD 96 (129)
T ss_pred EEEEEEEccHHHHHHHHHHHHHHhC
Confidence 3455555667778888887777775
No 72
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=26.65 E-value=2.2e+02 Score=19.85 Aligned_cols=24 Identities=4% Similarity=-0.049 Sum_probs=14.9
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029637 166 EVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 166 ~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
++.+.+.+.+.+..+.+...++|+
T Consensus 73 ~~~vyv~~~~~~~~~~~~~~~~f~ 96 (124)
T TIGR00004 73 KTTVFLTDLNDFAEVNEVYGQYFD 96 (124)
T ss_pred EEEEEEeChHHHHHHHHHHHHHcC
Confidence 444444566677777777777664
No 73
>PLN02778 3,5-epimerase/4-reductase
Probab=26.57 E-value=1.2e+02 Score=24.90 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=27.5
Q ss_pred CCCeEEEEeCCccCCC-----CChHHHH---HHHHHHHHHHHHHcCCceeee
Q 029637 91 PVSHVIHTVGPVFNFH-----CNPEDIL---RSAYKNCLSVGKANNIQYIAF 134 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~-----~~~~~~L---~~~~~~~L~~a~~~~~~sIa~ 134 (190)
.+++|||++++..... .+....+ ...-.++++.|.+.+++-+.+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5799999998753211 1222223 234568888888888875544
No 74
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=26.50 E-value=1.6e+02 Score=19.05 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=27.3
Q ss_pred CeEEEEeCC-ccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecc
Q 029637 93 SHVIHTVGP-VFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (190)
Q Consensus 93 ~~IiH~v~P-~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (190)
-.|.|+..| .+++ ...=...++.+++.|.++|.+-+..+.
T Consensus 23 ~~i~hT~V~~~~rG----qGia~~L~~~~l~~a~~~~~kv~p~C~ 63 (78)
T PF14542_consen 23 IVITHTEVPPELRG----QGIAKKLVEAALDYARENGLKVVPTCS 63 (78)
T ss_dssp EEEEEEEE-CSSST----TTHHHHHHHHHHHHHHHTT-EEEETSH
T ss_pred EEEEEEEECccccC----CcHHHHHHHHHHHHHHHCCCEEEEECH
Confidence 467798765 4443 135567788899999999998876653
No 75
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=26.24 E-value=2e+02 Score=23.43 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 111 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 111 ~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
..=....++++..|.+.|++.+.+=++||.+..=|.++....
T Consensus 43 ~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~l 84 (245)
T COG0020 43 KAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFL 84 (245)
T ss_pred HHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHH
Confidence 444566777777777889999999999999998888887663
No 76
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=25.94 E-value=2.3e+02 Score=20.14 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=17.3
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+-|-+.+..+.+...+||.
T Consensus 74 v~~~iyl~d~~~~~~~~~~~~~~f~ 98 (127)
T TIGR03610 74 TFNHIFIRDWADYAAINEVYAEYFP 98 (127)
T ss_pred EEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 3555566666777888777777775
No 77
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=25.72 E-value=51 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHcCCceeeeccc
Q 029637 111 DILRSAYKNCLSVGKANNIQYIAFPAI 137 (190)
Q Consensus 111 ~~L~~~~~~~L~~a~~~~~~sIa~P~l 137 (190)
-.+..||+.....|.++|. .+|+.
T Consensus 49 Ps~~~cyrr~~~~a~~~Gw---~iPS~ 72 (108)
T PF09039_consen 49 PSFSACYRRLKRAAKENGW---PIPSE 72 (108)
T ss_dssp --HHHHHHHHHHHHHHHT--------H
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCCH
Confidence 3689999999999999996 45543
No 78
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=25.60 E-value=2.1e+02 Score=23.34 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=27.2
Q ss_pred CCCeEEEEeCCccCCCCChH-HHHH---HHHHHHHHHHHHc-CCceeeecc
Q 029637 91 PVSHVIHTVGPVFNFHCNPE-DILR---SAYKNCLSVGKAN-NIQYIAFPA 136 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~-~~L~---~~~~~~L~~a~~~-~~~sIa~P~ 136 (190)
.++.|||+++|......+.. ..+. ..-.++|+.|.+. +++.|.+..
T Consensus 77 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~S 127 (322)
T PLN02986 77 GCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTS 127 (322)
T ss_pred CCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 37999999998533211211 2232 3456777777764 677666643
No 79
>KOG3716 consensus Carnitine O-acyltransferase CPTI [Lipid transport and metabolism]
Probab=24.52 E-value=1.6e+02 Score=27.76 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCceeeecccccCC---CCCChHHHHHHHHHHH
Q 029637 108 NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV---SQYPPDEAATIAISTV 157 (190)
Q Consensus 108 ~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~---~g~p~~~~a~~~l~~i 157 (190)
+..+.++.||...=.++++..+.+++|...|-|. +|.+||-..+.+++-.
T Consensus 516 ~~~~~I~~~~~~~~~l~~Dv~~~~~~f~dfGKg~iKKc~vSPDafiQmAlQLA 568 (764)
T KOG3716|consen 516 ECLDEIERAYEAAKKLADDVDLHSLVFTDFGKGFIKKCGVSPDAFIQMALQLA 568 (764)
T ss_pred hHHHHHHHHHHHHHHHhhhchheeeeehhhcchhHHhcCCCchHHHHHHHHHH
Confidence 3568889999999899999999999999999994 8999999999888754
No 80
>PRK06199 ornithine cyclodeaminase; Validated
Probab=24.34 E-value=3e+02 Score=23.78 Aligned_cols=70 Identities=6% Similarity=0.042 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHH--HHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEecChHHHHHHHHHHHHHh
Q 029637 111 DILRSAYKNCLSV--GKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELL 188 (190)
Q Consensus 111 ~~L~~~~~~~L~~--a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~~ 188 (190)
..+|.+--.++.. ..+.+.++++ .||||.- |+..++++......+++|++...+++..+.|.+.+...+
T Consensus 135 Ta~RTaA~salaa~~LAr~da~~l~--iiG~G~Q-------A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~ 205 (379)
T PRK06199 135 SAYRTGAVPGVGARHLARKDSKVVG--LLGPGVM-------GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY 205 (379)
T ss_pred hhhHHHHHHHHHHHHhccCCCCEEE--EECCcHH-------HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc
Confidence 3455444444422 2245666666 6888853 344455555544468999999999999999999887665
Q ss_pred c
Q 029637 189 Q 189 (190)
Q Consensus 189 ~ 189 (190)
+
T Consensus 206 ~ 206 (379)
T PRK06199 206 P 206 (379)
T ss_pred C
Confidence 3
No 81
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=23.84 E-value=72 Score=26.79 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=14.2
Q ss_pred eecccccCCCCCChHHHHHHHHHHHH
Q 029637 133 AFPAISCGVSQYPPDEAATIAISTVK 158 (190)
Q Consensus 133 a~P~lgtG~~g~p~~~~a~~~l~~i~ 158 (190)
-+|.||-|....++..+.+++..|++
T Consensus 14 ~mP~iGlGTw~~~~~~~~~aV~~Al~ 39 (300)
T KOG1577|consen 14 KMPIIGLGTWQSPPGQVAEAVKAAIK 39 (300)
T ss_pred ccceeeeEecccChhhHHHHHHHHHH
Confidence 35556666555555555555554444
No 82
>PRK05086 malate dehydrogenase; Provisional
Probab=23.75 E-value=4.3e+02 Score=22.00 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=48.0
Q ss_pred CCCeEEEEeCCccCCCCChHHHHHH---HHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDILRS---AYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
.++.||-+++.....+.+..+.|.. .++++.+...+.+.+.+.+ +..-|.|.-+.++.+++.++.
T Consensus 69 ~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivi------vvsNP~D~~t~~~~~~~~~~s 136 (312)
T PRK05086 69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIG------IITNPVNTTVAIAAEVLKKAG 136 (312)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------EccCchHHHHHHHHHHHHHhc
Confidence 4788999988654444334566776 8889998888888888777 455788888888777776663
No 83
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=21.55 E-value=1.9e+02 Score=23.18 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=27.4
Q ss_pred CCCeEEEEeCCcc----CCCCChHHH---HHHHHHHHHHHHHHcCCceeee
Q 029637 91 PVSHVIHTVGPVF----NFHCNPEDI---LRSAYKNCLSVGKANNIQYIAF 134 (190)
Q Consensus 91 ~~~~IiH~v~P~~----~~~~~~~~~---L~~~~~~~L~~a~~~~~~sIa~ 134 (190)
.++.|||++++.- ... +.... -...-.++|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMT-YPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhh-CcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 4589999998632 111 12222 2245678888888888877766
No 84
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=21.10 E-value=81 Score=23.96 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=15.4
Q ss_pred CceeeeeeeeCC-CceEEEEE
Q 029637 1 MTFKVQTLSFST-KTSLKISK 20 (190)
Q Consensus 1 ~~~~~~~~~~~~-~~~i~i~~ 20 (190)
|+||.+|..++| ..+++||.
T Consensus 43 vDfkirTv~i~G~~VkLqIwD 63 (198)
T KOG0079|consen 43 VDFKIRTVDINGDRVKLQIWD 63 (198)
T ss_pred eeEEEEEeecCCcEEEEEEee
Confidence 789999999987 45777764
No 85
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ]. It may also play some role in wobble uridine tRNA modification []. This entry represents the ELP4 subunit. ELP4 is not required for the association of the complex with nascent RNA transcript, but is required for complex integrity and histone acetyltransferase activity. It is also required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA in yeast species.; GO: 0006357 regulation of transcription from RNA polymerase II promoter, 0033588 Elongator holoenzyme complex; PDB: 4EJS_A 4A8J_A.
Probab=20.80 E-value=4.6e+02 Score=22.47 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHH---HHcCCceeeecccccCCCCCChHH---HHHHHHHHHHHHhc--CCCeEEEEecChHHH
Q 029637 110 EDILRSAYKNCLSVG---KANNIQYIAFPAISCGVSQYPPDE---AATIAISTVKEFAN--DFKEVHFILFTDDIY 177 (190)
Q Consensus 110 ~~~L~~~~~~~L~~a---~~~~~~sIa~P~lgtG~~g~p~~~---~a~~~l~~i~~~~~--~l~~V~~v~~~~~~~ 177 (190)
...+-+.+++.++.. ....+--|++|.|++...+-|... ..-.++..+|.-+. .-..|-++......|
T Consensus 179 ~~~ll~~i~~~i~~~~~~~~~~v~RI~I~sl~SP~w~~~~~~~~~~ll~FL~~LR~LlR~~~s~~v~~iTlP~~L~ 254 (363)
T PF05625_consen 179 YRSLLQQIQQIISKSGFSPPSKVLRIVIPSLGSPLWYPPSASQPSELLRFLHSLRALLRKYSSNAVAMITLPSHLY 254 (363)
T ss_dssp HHHHHHHHHHHHHH----TTTSEEEEEETTTT-TTTS-GGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEEGTTS
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCcccCCcccccHHHHHHHHHHHHHHHhccCCCEEEEEEECHHHh
Confidence 456666677777665 667889999999999987544432 23456677777776 455677777666555
No 86
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=20.36 E-value=4.7e+02 Score=21.17 Aligned_cols=64 Identities=16% Similarity=0.349 Sum_probs=32.3
Q ss_pred HHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEE---EecChHHHHHHHHHHHHHh
Q 029637 120 CLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHF---ILFTDDIYNVWLKKAKELL 188 (190)
Q Consensus 120 ~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~---v~~~~~~~~~f~~~~~~~~ 188 (190)
+|+...+.|++.+.+-.+.- +-|... +-+.+++..|...++++.+ +++..+.|..+.+.++...
T Consensus 65 aL~klk~~gy~eviiQ~lhi-IpG~Ey----Eklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ 131 (265)
T COG4822 65 ALNKLKDQGYEEVIIQPLHI-IPGIEY----EKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQI 131 (265)
T ss_pred HHHHHHHccchheeeeeeee-cCchHH----HHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhc
Confidence 34444455665555543321 111222 2335566666666666554 5566666666666655443
No 87
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=20.10 E-value=1e+02 Score=20.68 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAIS 155 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~ 155 (190)
..++..||+.-....++.|.+++=|-.-.+.|.++...+-.+
T Consensus 8 HsAifQ~L~~~~~~~v~~i~lTASGGpFr~~~~~~l~~vt~~ 49 (84)
T PF08436_consen 8 HSAIFQCLQGEKREEVEKIILTASGGPFRDKPREELKNVTPE 49 (84)
T ss_dssp HHHHHHHSGHHHHCTEEEEEEEE--STTTTSHHHHHTT--HH
T ss_pred HHHHHHHCCCCCccccCEEEEECcchhhCCCCHHHHcCCCHH
Confidence 357777888778889999999999988888888777665443
Done!