Query 029637
Match_columns 190
No_of_seqs 127 out of 1062
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 02:44:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q6z_A Poly [ADP-ribose] polym 100.0 2.9E-49 9.9E-54 311.4 20.1 177 7-189 30-214 (214)
2 3q71_A Poly [ADP-ribose] polym 100.0 7.1E-48 2.4E-52 304.3 21.5 176 8-190 33-217 (221)
3 1spv_A Putative polyprotein/ph 100.0 1.4E-47 4.9E-52 296.1 20.3 171 13-189 2-176 (184)
4 2xd7_A Core histone macro-H2A. 100.0 2.6E-47 8.7E-52 296.7 20.0 171 9-186 14-192 (193)
5 1yd9_A Core histone macro-H2A. 100.0 4E-47 1.4E-51 295.5 19.3 173 9-188 14-191 (193)
6 4abl_A Poly [ADP-ribose] polym 100.0 7.5E-47 2.5E-51 291.2 19.4 162 6-187 15-181 (183)
7 2x47_A Macro domain-containing 100.0 1.7E-46 5.8E-51 299.6 19.8 167 13-189 61-233 (235)
8 3kh6_A Poly [ADP-ribose] polym 100.0 2.8E-45 9.6E-50 285.4 18.8 165 3-187 23-192 (199)
9 1vhu_A Hypothetical protein AF 100.0 2.3E-45 7.7E-50 289.2 15.5 171 12-190 19-203 (211)
10 2dx6_A Hypothetical protein TT 100.0 2.1E-44 7E-49 272.7 17.1 157 15-184 3-159 (159)
11 3eti_A X (ADRP) domain, macro 100.0 8.8E-44 3E-48 270.4 12.4 155 13-185 9-167 (168)
12 3gqe_A Non-structural protein 100.0 3.2E-42 1.1E-46 261.6 16.7 156 13-186 3-160 (168)
13 3gpg_A NSP3, non-structural pr 100.0 1.2E-42 4.2E-47 263.8 14.2 155 13-186 9-166 (168)
14 3ejg_A Non-structural protein 100.0 1.6E-41 5.4E-46 262.2 13.1 152 13-185 37-192 (193)
15 3ejf_A Non-structural protein 100.0 2.3E-41 7.8E-46 258.2 12.3 168 4-184 4-175 (176)
16 2acf_A Replicase polyprotein 1 100.0 2.5E-41 8.4E-46 260.1 12.1 158 13-189 19-176 (182)
17 2vri_A Non-structural protein 100.0 2.2E-40 7.5E-45 253.6 11.2 157 13-186 16-172 (174)
18 1njr_A 32.1 kDa protein in ADH 100.0 3.2E-37 1.1E-41 251.2 12.3 163 13-180 44-242 (284)
19 4gua_A Non-structural polyprot 100.0 7.2E-36 2.5E-40 256.9 15.7 156 13-187 343-501 (670)
20 2jyc_A Uncharacterized protein 100.0 2.7E-30 9.3E-35 195.1 14.2 135 9-159 15-150 (160)
21 2eee_A Uncharacterized protein 100.0 7.5E-30 2.6E-34 190.7 14.2 141 12-173 7-148 (149)
22 2fg1_A Conserved hypothetical 99.9 2.8E-27 9.5E-32 178.4 12.4 137 15-158 5-147 (158)
23 3sig_A PArg, poly(ADP-ribose) 99.2 1.8E-11 6.1E-16 99.0 7.3 92 95-186 172-276 (277)
24 2vg0_A Short-chain Z-isoprenyl 63.7 9.5 0.00033 29.4 4.7 48 114-162 33-80 (227)
25 3ugs_B Undecaprenyl pyrophosph 51.3 16 0.00056 28.1 4.0 47 114-161 36-82 (225)
26 4h8e_A Undecaprenyl pyrophosph 46.3 23 0.00078 27.9 4.2 40 113-152 53-92 (256)
27 3dhn_A NAD-dependent epimerase 46.0 47 0.0016 24.2 5.9 45 91-136 67-111 (227)
28 3sgv_B Undecaprenyl pyrophosph 40.5 22 0.00074 27.9 3.3 49 112-161 45-93 (253)
29 2vg3_A Undecaprenyl pyrophosph 36.7 36 0.0012 27.1 4.0 40 113-152 84-123 (284)
30 2d2r_A Undecaprenyl pyrophosph 35.5 28 0.00097 27.1 3.2 39 114-152 45-83 (245)
31 3lgd_A Adenosine deaminase CEC 33.0 1.7E+02 0.0059 25.1 8.1 53 110-162 195-252 (508)
32 3qas_B Undecaprenyl pyrophosph 31.9 37 0.0013 26.6 3.3 39 114-152 47-85 (253)
33 2zvr_A Uncharacterized protein 31.2 1.2E+02 0.0042 23.0 6.4 61 111-172 109-169 (290)
34 1qu9_A YJGF protein; structura 30.6 1.2E+02 0.0041 20.5 5.6 25 165-189 72-96 (128)
35 4gqb_A Protein arginine N-meth 28.9 24 0.00083 31.4 2.0 31 13-43 410-440 (637)
36 3h2s_A Putative NADH-flavin re 28.7 62 0.0021 23.4 4.1 42 91-135 62-103 (224)
37 3l7q_A Putative translation in 28.4 1.1E+02 0.0038 20.6 5.1 25 165-189 72-96 (125)
38 3qc0_A Sugar isomerase; TIM ba 28.2 1.8E+02 0.0063 21.5 7.5 52 111-162 79-130 (275)
39 3kjj_A NMB1025 protein; YJGF p 27.7 1.4E+02 0.0049 20.3 5.6 25 165-189 69-93 (128)
40 1i60_A IOLI protein; beta barr 27.2 1.9E+02 0.0065 21.4 7.3 51 111-162 80-130 (278)
41 1qd9_A Purine regulatory prote 27.0 1.5E+02 0.005 19.9 5.8 24 166-189 72-95 (124)
42 3vcz_A Endoribonuclease L-PSP; 26.9 1.4E+02 0.0048 21.0 5.6 25 165-189 96-120 (153)
43 3r0p_A L-PSP putative endoribo 25.9 1.5E+02 0.0052 19.9 5.4 25 165-189 75-99 (127)
44 2b33_A Protein synthesis inhib 25.6 1.7E+02 0.0058 20.3 5.7 24 166-189 86-109 (140)
45 3pao_A Adenosine deaminase; st 24.3 1.4E+02 0.0047 23.9 5.7 53 109-162 72-127 (326)
46 1f75_A Undecaprenyl pyrophosph 24.1 30 0.001 27.0 1.5 38 113-150 49-86 (249)
47 2c29_D Dihydroflavonol 4-reduc 23.2 1.7E+02 0.0057 22.6 6.0 47 91-137 77-128 (337)
48 3ew7_A LMO0794 protein; Q8Y8U8 23.0 81 0.0028 22.6 3.8 42 91-136 61-102 (221)
49 3ngf_A AP endonuclease, family 22.6 2.4E+02 0.0083 21.0 8.4 51 110-162 88-138 (269)
50 4hc4_A Protein arginine N-meth 22.6 71 0.0024 26.3 3.6 26 14-39 132-157 (376)
51 3l23_A Sugar phosphate isomera 22.3 2.6E+02 0.0089 21.5 6.9 49 110-162 103-151 (303)
52 3m2p_A UDP-N-acetylglucosamine 22.3 1.7E+02 0.0057 22.4 5.7 46 91-136 62-108 (311)
53 3obe_A Sugar phosphate isomera 21.5 2.7E+02 0.0094 21.4 6.9 48 110-161 109-156 (305)
54 1jd1_A Hypothetical 13.9 kDa p 21.4 1.8E+02 0.006 19.6 5.1 51 109-189 49-99 (129)
55 3k0t_A Endoribonuclease L-PSP, 21.4 1.2E+02 0.0042 21.1 4.3 24 166-189 91-114 (143)
56 2cvl_A TTHA0137, protein trans 20.9 1.9E+02 0.0066 19.2 5.7 24 166-189 72-95 (124)
57 2ewc_A Conserved hypothetical 20.6 2E+02 0.0069 19.3 5.7 25 165-189 64-88 (126)
58 1x25_A Hypothetical UPF0076 pr 20.3 1.9E+02 0.0064 19.5 5.0 24 166-189 76-99 (128)
59 3m1x_A Putative endoribonuclea 20.1 2E+02 0.0067 20.1 5.1 25 165-189 96-120 (148)
No 1
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=2.9e-49 Score=311.39 Aligned_cols=177 Identities=32% Similarity=0.440 Sum_probs=163.6
Q ss_pred eeeeCCCceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEcc
Q 029637 7 TLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP 86 (190)
Q Consensus 7 ~~~~~~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~ 86 (190)
++.+.++.+|.+++|||+++++ |||||++|+.+.++||+++||++++|++|+++|+++++. .+.+++|++++|+
T Consensus 30 ~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~ 103 (214)
T 3q6z_A 30 RTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKR--EGRLLPGNATISK 103 (214)
T ss_dssp EEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHH--HCCCCTTCEEEEE
T ss_pred EEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHH--cCCCCCCeEEEEc
Confidence 5677888999999999999876 999999999999999999999999999999999987532 3479999999999
Q ss_pred CCCCCCCeEEEEeCCccCCCCC--hHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc--
Q 029637 87 GFKLPVSHVIHTVGPVFNFHCN--PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN-- 162 (190)
Q Consensus 87 ~~~l~~~~IiH~v~P~~~~~~~--~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~-- 162 (190)
+++|+||||||+|+|.|+.+.. +.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++
T Consensus 104 ~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~ 183 (214)
T 3q6z_A 104 AGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK 183 (214)
T ss_dssp CTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred CCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999987642 357999999999999999999999999999999999999999999999999985
Q ss_pred ----CCCeEEEEecChHHHHHHHHHHHHHhc
Q 029637 163 ----DFKEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 163 ----~l~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
.+++|+||++|++++++|+++++++|+
T Consensus 184 ~~~~~l~~V~fv~~d~~~~~~f~~~l~~~f~ 214 (214)
T 3q6z_A 184 KDGHCLKEIYLVDVSEKTVEAFAEAVKTVFK 214 (214)
T ss_dssp C--CCCCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHHhhC
Confidence 478999999999999999999999984
No 2
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.1e-48 Score=304.27 Aligned_cols=176 Identities=24% Similarity=0.375 Sum_probs=160.1
Q ss_pred eeeCCCceEEEEEcccceeccCCCCcEEEEcCCCCC-CCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEcc
Q 029637 8 LSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEIL-LLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP 86 (190)
Q Consensus 8 ~~~~~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~-~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~ 86 (190)
....++.+|.+++|||+++++ |||||++|+.+ .++|||++||++++|++|+++|+++.. ++++++|++++|+
T Consensus 33 ~~t~~g~~I~i~~GDIt~~~v----DAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~---~~~~~~G~a~iT~ 105 (221)
T 3q71_A 33 LVSPGGLQMLLVKEGVQNAKT----DVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQ---GVAVSMGTVLKTS 105 (221)
T ss_dssp EECTTCCEEEEEESCGGGCCS----SEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHH---TSCCCTTCEEEEE
T ss_pred eeecCCcEEEEEeCcccCCcC----CEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhc---cCCCCCCeEEEEc
Confidence 345678999999999999875 99999999999 578999999999999999999998752 4589999999999
Q ss_pred CCCCCCCeEEEEeCCccCCCC-ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc---
Q 029637 87 GFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN--- 162 (190)
Q Consensus 87 ~~~l~~~~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~--- 162 (190)
+++|+||||||+|+|.|+.+. .+.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++
T Consensus 106 g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~ 185 (221)
T 3q71_A 106 SWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQ 185 (221)
T ss_dssp CTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998765 2468999999999999999999999999999999999999999999999999985
Q ss_pred --CCCeEEEEecCh--HHHHHHHHHHHHHhcC
Q 029637 163 --DFKEVHFILFTD--DIYNVWLKKAKELLQG 190 (190)
Q Consensus 163 --~l~~V~~v~~~~--~~~~~f~~~~~~~~~~ 190 (190)
.+++|+||+|++ +++++|.++|++.|.|
T Consensus 186 ~~~l~~V~fv~f~~d~~~~~~f~~~l~~r~~~ 217 (221)
T 3q71_A 186 LKTLQEVHFLLHPSDHENIQAFSDEFARRANG 217 (221)
T ss_dssp CSSCCEEEEEECTTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHccC
Confidence 578999999965 5789999999998875
No 3
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=1.4e-47 Score=296.13 Aligned_cols=171 Identities=39% Similarity=0.596 Sum_probs=157.7
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~ 92 (190)
+.+|++++|||+++++ |||||++|+.+.+++|++++|++++|++++++|+++++. .+.+++|++++|++++|+|
T Consensus 2 ~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~e~~~~~~~--~g~~~~G~a~iT~~~~L~~ 75 (184)
T 1spv_A 2 KTRIHVVQGDITKLAV----DVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ--QGDCPTGHAVITLAGDLPA 75 (184)
T ss_dssp -CCEEEEESCGGGCCC----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHHHHHH--HCSCCTTCEEEECCTTSSS
T ss_pred CCeEEEEeCcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHh--cCCCCCCCEEEeeCCCCCC
Confidence 4579999999999875 999999999999999999999999999999999987532 2489999999999999999
Q ss_pred CeEEEEeCCccCCCC-ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc---CCCeEE
Q 029637 93 SHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN---DFKEVH 168 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~---~l~~V~ 168 (190)
+||||+++|.|+.+. .+.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++ .+++|+
T Consensus 76 k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~~V~ 155 (184)
T 1spv_A 76 KAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVY 155 (184)
T ss_dssp SEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCSSSEEE
T ss_pred CEEEEEcCCcccCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 999999999998764 4678999999999999999999999999999999999999999999999999986 578999
Q ss_pred EEecChHHHHHHHHHHHHHhc
Q 029637 169 FILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 169 ~v~~~~~~~~~f~~~~~~~~~ 189 (190)
||+|+++.+++|++.++.+|+
T Consensus 156 ~v~~~~~~~~~~~~~l~~~~~ 176 (184)
T 1spv_A 156 FVCYDEENAHLYERLLTQQGD 176 (184)
T ss_dssp EEESSHHHHHHHHHHHHCC--
T ss_pred EEECCHHHHHHHHHHHHHhCC
Confidence 999999999999999998875
No 4
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=2.6e-47 Score=296.71 Aligned_cols=171 Identities=23% Similarity=0.412 Sum_probs=158.9
Q ss_pred eeCCCceEEEEEccccee---ccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEc
Q 029637 9 SFSTKTSLKISKGDISRW---CVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARIT 85 (190)
Q Consensus 9 ~~~~~~~i~i~~GdI~~~---~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t 85 (190)
.+..+.+|++++|||+++ ++ |||||++|+.+.+++|++++|++++|++++++|+++++. .+.+++|++++|
T Consensus 14 ~~~~~~~i~i~~GDIt~~~~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT 87 (193)
T 2xd7_A 14 SLVLGQKLSLTQSDISHIGSMRV----EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKS--QGPLEVAEAAVS 87 (193)
T ss_dssp ECTTSCEEEEEECCGGGGGGCCC----SEEEEEECTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHH--TCSCCTTCEEEE
T ss_pred ccCCCCEEEEEeCcccccCCCCC----CEEEECCCccCCCccHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCeEEe
Confidence 456689999999999998 65 999999999999999999999999999999999987643 358999999999
Q ss_pred cCCCCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc---
Q 029637 86 PGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN--- 162 (190)
Q Consensus 86 ~~~~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~--- 162 (190)
++++|+|+||||+++|.|+.. .+.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++
T Consensus 88 ~~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~ 166 (193)
T 2xd7_A 88 QSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSS 166 (193)
T ss_dssp ECTTSSSSEEEEEECCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred eCCCCCCCEEEEECCCcCCCc-chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999754 5678999999999999999999999999999999999999999999999999985
Q ss_pred --CCCeEEEEecChHHHHHHHHHHHH
Q 029637 163 --DFKEVHFILFTDDIYNVWLKKAKE 186 (190)
Q Consensus 163 --~l~~V~~v~~~~~~~~~f~~~~~~ 186 (190)
.+++|+||+|+++++++|++.+.+
T Consensus 167 ~~~l~~V~fv~~~~~~~~~~~~~l~~ 192 (193)
T 2xd7_A 167 ASSLKNVYFLLFDSESIGIYVQEMAK 192 (193)
T ss_dssp SCCCCEEEEEECSHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHhh
Confidence 488999999999999999998864
No 5
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=4e-47 Score=295.53 Aligned_cols=173 Identities=25% Similarity=0.479 Sum_probs=159.4
Q ss_pred eeCCCceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCC
Q 029637 9 SFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGF 88 (190)
Q Consensus 9 ~~~~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~ 88 (190)
.+..+.+|++++|||+++++ |||||++|+.+.+++|++++|++++|++++++|+++++. .+.+++|++++|+++
T Consensus 14 ~~~~~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~ 87 (193)
T 1yd9_A 14 SLFLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKK--NGPLEVAGAAVSAGH 87 (193)
T ss_dssp ECTTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHH--HCSCCTTCEEEEECT
T ss_pred CcCCCCEEEEEeCccCcCcC----CEEEECCCccCCCCchHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCEEEecCC
Confidence 45558899999999999875 999999999999999999999999999999999987642 248999999999999
Q ss_pred CCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc-----C
Q 029637 89 KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN-----D 163 (190)
Q Consensus 89 ~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~-----~ 163 (190)
+|+|+||||+++|.|+. ..+.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++ .
T Consensus 88 ~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~ 166 (193)
T 1yd9_A 88 GLPAKFVIHCNSPVWGS-DKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSS 166 (193)
T ss_dssp TSSSSEEEEECCCCTTS-TTHHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTCC
T ss_pred CCCCCEEEEeCCCCcCC-cchHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999975 35678999999999999999999999999999999999999999999999999985 4
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHh
Q 029637 164 FKEVHFILFTDDIYNVWLKKAKELL 188 (190)
Q Consensus 164 l~~V~~v~~~~~~~~~f~~~~~~~~ 188 (190)
+++|+||+|+++++++|.++++++.
T Consensus 167 l~~V~fv~~~~~~~~~~~~~l~~~~ 191 (193)
T 1yd9_A 167 IKTVYFVLFDSESIGIYVQEMAKLD 191 (193)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTT
T ss_pred cCEEEEEECCHHHHHHHHHHHHhhh
Confidence 7899999999999999999987653
No 6
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=7.5e-47 Score=291.24 Aligned_cols=162 Identities=25% Similarity=0.396 Sum_probs=152.2
Q ss_pred eeeeeCCCceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEc
Q 029637 6 QTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARIT 85 (190)
Q Consensus 6 ~~~~~~~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t 85 (190)
..+++ ++.+|++++|||+++++ |||||++|+.+.+++|++++|++++|+++++||+++. .+++|++++|
T Consensus 15 ~~~~i-g~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGV~~aI~~aaG~~l~~ec~~~~------~~~~G~a~iT 83 (183)
T 4abl_A 15 YEMKI-GSIIFQVASGDITKEEA----DVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQA------QQRKNDYIIT 83 (183)
T ss_dssp EEEEE-TTEEEEEEESCGGGCBC----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------HHSCCSEEEE
T ss_pred eEEEE-CCEEEEEEeCcccCccc----CEEEECCCCCCCCCccHHHHHHHHhhHHHHHHHHHhc------CCCCCceEEe
Confidence 44455 68999999999999876 9999999999999999999999999999999999875 5889999999
Q ss_pred cCCCCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc---
Q 029637 86 PGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN--- 162 (190)
Q Consensus 86 ~~~~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~--- 162 (190)
++++|+||||||+++|.| |++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++
T Consensus 84 ~~~~L~~k~VIH~vgP~~---------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~ 154 (183)
T 4abl_A 84 GGGFLRCKNIIHVIGGND---------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGS 154 (183)
T ss_dssp ECTTSBSSEEEEEETTSC---------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCEEEEeCcHHH---------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999975 99999999999999999999999999999999999999999999999985
Q ss_pred --CCCeEEEEecChHHHHHHHHHHHHH
Q 029637 163 --DFKEVHFILFTDDIYNVWLKKAKEL 187 (190)
Q Consensus 163 --~l~~V~~v~~~~~~~~~f~~~~~~~ 187 (190)
.+++|+||+|+++++++|.+++++-
T Consensus 155 ~~~l~~V~fv~f~~~~~~~f~~~l~kr 181 (183)
T 4abl_A 155 AQSVKKVKVVIFLPQVLDVFYANMKKR 181 (183)
T ss_dssp CSSCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHhh
Confidence 4789999999999999999999873
No 7
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-46 Score=299.59 Aligned_cols=167 Identities=33% Similarity=0.559 Sum_probs=157.7
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~ 92 (190)
|.+|.|++|||+++++ |||||++|+.+.++||++++|++++|++++++|+++. .+++|++++|++++|+|
T Consensus 61 ~~~i~i~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~g------~~~~G~a~iT~~~~L~~ 130 (235)
T 2x47_A 61 NEKISLLRSDITKLEV----DAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQ------SCKTGKAKITGGYRLPA 130 (235)
T ss_dssp HTTEEEEESCGGGEES----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHTSC------CCCBTCEEEEECTTSSS
T ss_pred CCEEEEEeCccCcccC----CEEEEecCcccCCccHHHHHHHHHhCHHHHHHHHHhC------CCCCCceEEecCCCCCC
Confidence 6789999999999986 9999999999999999999999999999999998763 79999999999999999
Q ss_pred CeEEEEeCCccCCCC--ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc----CCCe
Q 029637 93 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN----DFKE 166 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~----~l~~ 166 (190)
+||||+|+|.|++.. .+.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++ .+++
T Consensus 131 k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~~ 210 (235)
T 2x47_A 131 KYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDR 210 (235)
T ss_dssp SEEEEEBCCCCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCSE
T ss_pred CEEEEecCccccCCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 999999999997642 3568999999999999999999999999999999999999999999999999985 4889
Q ss_pred EEEEecChHHHHHHHHHHHHHhc
Q 029637 167 VHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 167 V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
|+||+|+++.+++|.+.++.||+
T Consensus 211 V~fv~f~~~~~~~y~~~l~~~fp 233 (235)
T 2x47_A 211 LIICVFLEKDEDIYRSRLPHYFP 233 (235)
T ss_dssp EEEEECSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986
No 8
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=2.8e-45 Score=285.39 Aligned_cols=165 Identities=23% Similarity=0.359 Sum_probs=153.2
Q ss_pred eeeeeeeeCCCceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcE
Q 029637 3 FKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEA 82 (190)
Q Consensus 3 ~~~~~~~~~~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~ 82 (190)
+.+..+++ ++.+|++++|||+++++ |||||++|+.+.+++|++++|++++|++++++|+++. .+++|++
T Consensus 23 ~~~~~~~i-~~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~------~~~~G~a 91 (199)
T 3kh6_A 23 MTAYEMKI-GAITFQVATGDIATEQV----DVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLA------AQPHRDF 91 (199)
T ss_dssp CCEEEEEE-TTEEEEEEESCGGGCCS----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------TSCCCSS
T ss_pred CCceEEEE-CCEEEEEEecccccCcC----CEEEECCCCCCCCCchHHHHHHHHhhHHHHHHHHHhC------CCCCCeE
Confidence 34555555 67999999999999875 9999999999999999999999999999999999874 6899999
Q ss_pred EEccCCCCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc
Q 029637 83 RITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 162 (190)
Q Consensus 83 ~~t~~~~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~ 162 (190)
++|++++|+||||||+++|. .|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++
T Consensus 92 ~iT~g~~L~~k~VIH~vgp~---------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~ 162 (199)
T 3kh6_A 92 IITPGGCLKCKIIIHVPGGK---------DVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSS 162 (199)
T ss_dssp EEEECTTSSSSEEEEEETTS---------CHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCEEEEeCCCH---------HHHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999993 499999999999999999999999999999999999999999999999985
Q ss_pred -----CCCeEEEEecChHHHHHHHHHHHHH
Q 029637 163 -----DFKEVHFILFTDDIYNVWLKKAKEL 187 (190)
Q Consensus 163 -----~l~~V~~v~~~~~~~~~f~~~~~~~ 187 (190)
.+++|+||+|+++++++|.+++++.
T Consensus 163 ~~~~~~l~~V~fv~f~~~~~~~f~~~l~~~ 192 (199)
T 3kh6_A 163 QHSTPSLKTVKVVIFQPELLNIFYDSMKKR 192 (199)
T ss_dssp HCSSCSCCEEEEEESSTHHHHHHHHHHHTT
T ss_pred hcCCCCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 4789999999999999999999864
No 9
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=2.3e-45 Score=289.17 Aligned_cols=171 Identities=29% Similarity=0.406 Sum_probs=157.3
Q ss_pred CCceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcC----cchHHHHhhccccCCCCC--CCCCcEEEc
Q 029637 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAG----PDLQKACYQIPEAQPRVR--CPPGEARIT 85 (190)
Q Consensus 12 ~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G----~~l~~~~~~~~~~~~~~~--~~~G~~~~t 85 (190)
++.+|++++|||+++++ |||||++|+.+.+++|++++|++++| ++++++|+++++.. +. +++|++++|
T Consensus 19 ~~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~--g~~~~~~G~a~iT 92 (211)
T 1vhu_A 19 GDITLKLAQGDITQYPA----KAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQF--GRDYIDHGEVVVT 92 (211)
T ss_dssp TTEEEEEEESCGGGSCC----SEEEEEECTTCCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHH--SSSCCCTTCCEEE
T ss_pred CCEEEEEEecccCcCCC----CEEEECCCccccCccHHHHHHHHHhCCCchHHHHHHHHHHHHHc--CCCcccCCcEEEE
Confidence 56899999999999875 99999999999999999999999999 99999999866432 34 999999999
Q ss_pred cCCCCCC---CeEEEEeCC----ccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHH
Q 029637 86 PGFKLPV---SHVIHTVGP----VFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 158 (190)
Q Consensus 86 ~~~~l~~---~~IiH~v~P----~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~ 158 (190)
++++|++ +||||+++| .|++ .+.+.|++||++||+.|.+++++|||||+||||++|+|++++|++|+++++
T Consensus 93 ~~~~L~~~g~k~VIH~vgP~~~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~ 170 (211)
T 1vhu_A 93 PAMNLEERGIKYVFHTVGPICSGMWSE--ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVK 170 (211)
T ss_dssp ECGGGGGGTCCEEEEEECCCCTTCCCH--HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHH
T ss_pred ECCCCCccCcCEEEEecCCccccccCc--chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999999 999999999 9954 567899999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCCeEEEEecChHHHHHHHHHHHHHhcC
Q 029637 159 EFAN-DFKEVHFILFTDDIYNVWLKKAKELLQG 190 (190)
Q Consensus 159 ~~~~-~l~~V~~v~~~~~~~~~f~~~~~~~~~~ 190 (190)
+|++ .+++|+||+|+++.+++|.+.++.+.+|
T Consensus 171 ~~l~~~l~~V~~v~~~~~~~~~~~~~l~~~~~~ 203 (211)
T 1vhu_A 171 NFKGSAVKEVALVIYDRKSAEVALKVFERSLEG 203 (211)
T ss_dssp HCCCSSCCEEEEEESSHHHHHHHHHHHHHHC--
T ss_pred HHHhCCCCEEEEEECCHHHHHHHHHHHHHhhcc
Confidence 9984 3789999999999999999999999876
No 10
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=2.1e-44 Score=272.68 Aligned_cols=157 Identities=28% Similarity=0.401 Sum_probs=148.3
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCCCe
Q 029637 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~ 94 (190)
+|++++|||+++++ |||||++|+.+.+++|++++|++++|++++++|++.. ++++|++++|++++|+++|
T Consensus 3 ~i~i~~GDI~~~~~----daIVnaaN~~l~~ggGv~~aI~~~~G~~l~~~c~~~g------~~~~G~a~it~~~~L~~~~ 72 (159)
T 2dx6_A 3 RIRVVQGDITEFQG----DAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG------KIRVGEAAVTGAGNLPVRY 72 (159)
T ss_dssp EEEEEESCGGGCCS----SEEEEEEETTCCCCSTTHHHHHHHHCTHHHHHHHHHC------CCCTTCEEEEECTTSSSSE
T ss_pred EEEEEECcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHhcC------CCCCCcEEEecCCCCCCCE
Confidence 68999999999875 9999999999999999999999999999999998753 7999999999999999999
Q ss_pred EEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEecCh
Q 029637 95 VIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 174 (190)
Q Consensus 95 IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~ 174 (190)
|||+++|.|+ . .+.+.|++||+++|+.|.+++++|||||+||||++|+|+++++++|++++++| +.+++|+||+|++
T Consensus 73 Vih~vgp~~~-~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-~~~~~V~~v~~~~ 149 (159)
T 2dx6_A 73 VIHAAVLGDE-P-ASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-PDTLEVTLYGYRE 149 (159)
T ss_dssp EEEEEEESSS-C-CCHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-CTTCEEEEEESSH
T ss_pred EEEEeCCCCC-C-chHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEECCH
Confidence 9999999998 2 45789999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred HHHHHHHHHH
Q 029637 175 DIYNVWLKKA 184 (190)
Q Consensus 175 ~~~~~f~~~~ 184 (190)
++++.|++.+
T Consensus 150 ~~~~~~~~~l 159 (159)
T 2dx6_A 150 EDAEAIRRAL 159 (159)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 11
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=8.8e-44 Score=270.36 Aligned_cols=155 Identities=22% Similarity=0.224 Sum_probs=142.4
Q ss_pred CceEEEEEcccce----eccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCC
Q 029637 13 KTSLKISKGDISR----WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGF 88 (190)
Q Consensus 13 ~~~i~i~~GdI~~----~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~ 88 (190)
..+|++++||||+ +++ |||||++|+.+.++||+++||++++|++|++||+++++. .+++++|++++|+++
T Consensus 9 ~~~i~l~~GDIt~~~~~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~g~ 82 (168)
T 3eti_A 9 AGKVSFYQGDLDVLINFLEP----DVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKS--SKAIAPGNAVLFENV 82 (168)
T ss_dssp ETTEEEEESCHHHHHHHHCC----SEEEEEECTTCCCCSTTHHHHHHHTTTHHHHHHHHHHTT--SCCCCTTEEEEEEEE
T ss_pred CCeEEEEeCcccccCCCCCC----CEEEeCCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCEEEecCC
Confidence 4689999999999 665 999999999999999999999999999999999998643 358999999999999
Q ss_pred CCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Q 029637 89 KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVH 168 (190)
Q Consensus 89 ~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~ 168 (190)
|+++||||+|+|.|+.. ++.+.|++||++||+. .+|||||+||||++|||++++|++|++++++ ++|+
T Consensus 83 -l~~~~VIHtVgP~~~~~-~~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~ 150 (168)
T 3eti_A 83 -LEHLSVMNAVGPRNGDS-RVEGKLCNVYKAIAKC-----DGKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLN 150 (168)
T ss_dssp -ETTEEEEEEECCCTTST-THHHHHHHHHHHHHTS-----CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEE
T ss_pred -CCccEEEEecCCCCCcc-hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEE
Confidence 99999999999999653 5678999999999974 4899999999999999999999999999986 7999
Q ss_pred EEecChHHHHHHHHHHH
Q 029637 169 FILFTDDIYNVWLKKAK 185 (190)
Q Consensus 169 ~v~~~~~~~~~f~~~~~ 185 (190)
||+|+++.+++|++.+.
T Consensus 151 ~v~f~~~~~~~~~~~l~ 167 (168)
T 3eti_A 151 VFVYTDQERVTIENFFN 167 (168)
T ss_dssp EEECCHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHhc
Confidence 99999999999998764
No 12
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=100.00 E-value=3.2e-42 Score=261.63 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=141.5
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~ 92 (190)
+.+|++++||||++++ |||||++|+.+.+++|++++|++++|++++ .+.+++|++++|++ ++
T Consensus 3 ~~~i~v~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~---~~ 64 (168)
T 3gqe_A 3 APSYHVVRGDIATATE----GVIINAANSKGQPGGGVCGALYKKFPESFD-----------LQPIEVGKARLVKG---AA 64 (168)
T ss_dssp CCEEEEEESCGGGCCS----SEEEEEECTTSCCTTGGGSHHHHHCGGGCC-----------CCCCCTTCEEEECC---TT
T ss_pred CCeEEEEeCcccCccc----CEEEeCCCcccCCCccHHHHHHHHhhHHhc-----------CCCcCCCcEEEEcC---CC
Confidence 5789999999999876 999999999999999999999999999763 24799999999998 48
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEE
Q 029637 93 SHVIHTVGPVFNFHCN--PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFI 170 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~~--~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v 170 (190)
|||||+|+|.|+.+.. +.+.|++||++||++|.+++++|||||+||||++|||++++++.+.+.+..+.+.+.+|+||
T Consensus 65 k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~l~~~~~~~~~V~iv 144 (168)
T 3gqe_A 65 KHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIY 144 (168)
T ss_dssp CCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHCCCCCCeEEEE
Confidence 9999999999997652 35789999999999999999999999999999999999999998777776666678899999
Q ss_pred ecChHHHHHHHHHHHH
Q 029637 171 LFTDDIYNVWLKKAKE 186 (190)
Q Consensus 171 ~~~~~~~~~f~~~~~~ 186 (190)
+||++.++.|++.+.+
T Consensus 145 ~fd~~~~~~~~~~~~~ 160 (168)
T 3gqe_A 145 CRDKKWEMTLKEAVAR 160 (168)
T ss_dssp ESCHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHh
Confidence 9999999999998765
No 13
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=1.2e-42 Score=263.76 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=140.4
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~ 92 (190)
-....+++||||++++ |||||++|+.+.+++|++++|++++|++++ .+.+++|++++|+++ |
T Consensus 9 ~~~~~~~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~ 70 (168)
T 3gpg_A 9 APSYRVKRMDIAKNDE----ECVVNAANPRGLPGDGVCKAVYKKWPESFK-----------NSATPVGTAKTVMCG---T 70 (168)
T ss_dssp CCCC-CEESCGGGCCS----SCEEEECCTTCCCCSHHHHHHHHHCGGGGT-----------TCCCCTTCEEEEEET---T
T ss_pred CCceEEEeCcCCcccC----CEEEeCCCcccCCCchHHHHHHHHhhHHhh-----------cCCCCCCCEEEecCC---C
Confidence 4577899999999876 999999999999999999999999999763 247999999999994 9
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc-CCCeEEE
Q 029637 93 SHVIHTVGPVFNFHCN--PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN-DFKEVHF 169 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~~--~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~-~l~~V~~ 169 (190)
|||||+|+|.|+.+.. +.+.|++||++||++|.+++++|||||+||||++|||++++|+ +++++++|++ .+++|+|
T Consensus 71 k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V~f 149 (168)
T 3gpg_A 71 YPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADVVI 149 (168)
T ss_dssp EEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEEEE
T ss_pred CEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEEEE
Confidence 9999999999988652 3578999999999999999999999999999999999999999 8999999987 5889999
Q ss_pred EecChHHHHHHHHHHHH
Q 029637 170 ILFTDDIYNVWLKKAKE 186 (190)
Q Consensus 170 v~~~~~~~~~f~~~~~~ 186 (190)
|+|++++++.|++.+++
T Consensus 150 v~f~~~~~~~y~~~l~~ 166 (168)
T 3gpg_A 150 YCRDKEWEKKISEAIQM 166 (168)
T ss_dssp EESCHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHhc
Confidence 99999999999999875
No 14
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=100.00 E-value=1.6e-41 Score=262.21 Aligned_cols=152 Identities=21% Similarity=0.236 Sum_probs=138.7
Q ss_pred CceEEEEEcccce----eccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCC
Q 029637 13 KTSLKISKGDISR----WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGF 88 (190)
Q Consensus 13 ~~~i~i~~GdI~~----~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~ 88 (190)
+.+|.+++||||+ +++ |||||++|+.+.+++|+++||++++|++|++||+++++. .+++++|++++|+++
T Consensus 37 ~~~i~l~~GDIt~~~~~~~v----DAIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~l~~~--~g~~~~G~a~iT~~~ 110 (193)
T 3ejg_A 37 HDNVAFYQGDVDTVVNGVDF----DFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGL--AGKVKVGTGVMVECD 110 (193)
T ss_dssp ETTEEEEECCHHHHHHHCCC----SEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCSCCTTCEEEEEET
T ss_pred CCeEEEEeCcccccCcCCCc----CEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCEEEecCC
Confidence 5789999999999 554 999999999999999999999999999999999987643 248999999999999
Q ss_pred CCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Q 029637 89 KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVH 168 (190)
Q Consensus 89 ~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~ 168 (190)
+| ||||+|+|.|+. .+.+.|++||++||++ .+|||||+||||++|||++++|+++++++++ .+|+
T Consensus 111 ~L---~VIHtVGP~~~~--~~~~~L~~~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~-----~~V~ 175 (193)
T 3ejg_A 111 SL---RIFNVVGPRKGK--HERDLLIKAYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNT-----KEVK 175 (193)
T ss_dssp TE---EEEEEECCCSST--THHHHHHHHHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCS-----SCEE
T ss_pred Ce---eEEEecCCCCCc--hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEE
Confidence 99 999999999965 5778999999999983 3799999999999999999999999999987 4899
Q ss_pred EEecChHHHHHHHHHHH
Q 029637 169 FILFTDDIYNVWLKKAK 185 (190)
Q Consensus 169 ~v~~~~~~~~~f~~~~~ 185 (190)
||+|+++++++|.+.+.
T Consensus 176 fv~f~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 176 VFVYTDTEVCKVKDFVS 192 (193)
T ss_dssp EEECSHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHhc
Confidence 99999999999988763
No 15
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=100.00 E-value=2.3e-41 Score=258.22 Aligned_cols=168 Identities=20% Similarity=0.196 Sum_probs=141.5
Q ss_pred eeeeeeeCCCceEEEEEcccceeccCC----CCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCC
Q 029637 4 KVQTLSFSTKTSLKISKGDISRWCVDR----SSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79 (190)
Q Consensus 4 ~~~~~~~~~~~~i~i~~GdI~~~~~~~----~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~ 79 (190)
+.++...++..+|++++||||++++|. ++|||||++|+.+.++||+++||++++|++|++||+++++.+ ++++
T Consensus 4 ~~~~~~~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~- 80 (176)
T 3ejf_A 4 APATCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKH--GPQQ- 80 (176)
T ss_dssp ------CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCCCCSHHHHHHHHHHCHHHHHHHHHHHHHH--CCCS-
T ss_pred CcccccCCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHhc--CCCC-
Confidence 567788899999999999999998743 568899999999999999999999999999999999986432 3565
Q ss_pred CcEEEccCCCCCCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHH
Q 029637 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 159 (190)
Q Consensus 80 G~~~~t~~~~l~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~ 159 (190)
+++|.++.+++++|||+|+|.|... ++++.|++||+++|+ ++++|||||+||||++|||++++|++|+++++.
T Consensus 81 --a~iT~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~ 153 (176)
T 3ejf_A 81 --RLVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG 153 (176)
T ss_dssp --EEEECCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT
T ss_pred --eeecccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh
Confidence 8999999999999999999999653 567899999999998 899999999999999999999999999999983
Q ss_pred HhcCCCeEEEEecChHHHHHHHHHH
Q 029637 160 FANDFKEVHFILFTDDIYNVWLKKA 184 (190)
Q Consensus 160 ~~~~l~~V~~v~~~~~~~~~f~~~~ 184 (190)
..-+|.++.+|++.+++|+..+
T Consensus 154 ---~~v~v~~~~~D~e~~~~~~~~~ 175 (176)
T 3ejf_A 154 ---CTIRVLLFSLSQEHIDYFDVTC 175 (176)
T ss_dssp ---CCCEEEEEESCHHHHHHHHHTC
T ss_pred ---cceEEEEEcCCHHHHHHHHHHh
Confidence 2234555555688999998754
No 16
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=100.00 E-value=2.5e-41 Score=260.10 Aligned_cols=158 Identities=22% Similarity=0.302 Sum_probs=137.1
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~ 92 (190)
+.+|++++||||++..+.++|||||++|+.+.++||++++|++++|++++++|+++++. .+.+++|++++|++++|+
T Consensus 19 ~~~i~i~~GDIt~~~~~~~vDAIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~L~- 95 (182)
T 2acf_A 19 TDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL--NGPLTVGGSCLLSGHNLA- 95 (182)
T ss_dssp SSSEEEEESCHHHHHHHHCCSEEEEECCTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCCCCTTCEEEEECTTTC-
T ss_pred CCeEEEEeCcccccccCCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHH--cCCCCCCcEEEeeCCCCC-
Confidence 67899999999998211124999999999999999999999999999999999987642 348999999999999995
Q ss_pred CeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEec
Q 029637 93 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILF 172 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~ 172 (190)
+||||+++|.|+.+. +.+.|++||+++ ++++|||||+||||++|||++++|++|++++++ +|+||+|
T Consensus 96 ~~VIH~vgP~~~~~~-~~~~L~~~y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~------~V~~v~~ 162 (182)
T 2acf_A 96 KKCLHVVGPNLNAGE-DIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVYIAVN 162 (182)
T ss_dssp SEEEEECCCCGGGTC-CTTHHHHHHHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEEEEES
T ss_pred ceEEEECCCCCCCCc-hHHHHHHHHHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC------cEEEEEC
Confidence 899999999998653 467999999986 789999999999999999999999999999874 9999999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 029637 173 TDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 173 ~~~~~~~f~~~~~~~~~ 189 (190)
|++ .|.+.++.||+
T Consensus 163 d~~---~y~~~l~~~~p 176 (182)
T 2acf_A 163 DKA---LYEQVVMDYLD 176 (182)
T ss_dssp CHH---HHHHHHHHHC-
T ss_pred CHH---HHHHHHHHhCC
Confidence 998 55556667765
No 17
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=100.00 E-value=2.2e-40 Score=253.55 Aligned_cols=157 Identities=24% Similarity=0.241 Sum_probs=140.3
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~ 92 (190)
+.+|++++||||++..+.++|||||++|+.+.+++|++++|++++|++++++|+++++. .+.+++|++++|++++|
T Consensus 16 ~~~i~i~~GDIt~~~~~~~~DaIVNaaN~~l~~ggGv~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~l-- 91 (174)
T 2vri_A 16 YKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISS--NGPLKVGAGVMLECEKF-- 91 (174)
T ss_dssp ETTEEEEESCHHHHTTTSCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCSCCTTCEEEEECSSC--
T ss_pred CCeEEEEeccccccccCCCccEEEECCCccCCCCCcHhHHHHHHhhHHHHHHHHHHHHh--cCCCCCCeEEEEECCCC--
Confidence 67899999999998322235999999999999999999999999999999999987642 35899999999999997
Q ss_pred CeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEec
Q 029637 93 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILF 172 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~ 172 (190)
||||+++|.|... +.+.|++||+++|+. .+|||||+||||++|||+++++++|++++++ ++|+||+|
T Consensus 92 -~VIH~vgP~~~~~--~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-----~~V~~v~f 158 (174)
T 2vri_A 92 -NVFNVVGPRTGKH--EHSLLVEAYNSILFE-----NGIPLMPLLSCGIFGVRIENSLKALFSCDIN-----KPLQVFVY 158 (174)
T ss_dssp -EEEEEECCCSSTT--HHHHHHHHHHHHHHS-----SSCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----SCEEEEEC
T ss_pred -EEEEEcCCCCCcc--hHHHHHHHHHHHHhh-----CCcEEeCccccCCCCCCHHHHHHHHHHHHhh-----CcEEEEEc
Confidence 9999999999642 678999999999984 3499999999999999999999999998875 78999999
Q ss_pred ChHHHHHHHHHHHH
Q 029637 173 TDDIYNVWLKKAKE 186 (190)
Q Consensus 173 ~~~~~~~f~~~~~~ 186 (190)
+++.+++|.+.|++
T Consensus 159 ~~~~~~~~~~~l~~ 172 (174)
T 2vri_A 159 SSNEEQAVLKFLDG 172 (174)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999865
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=100.00 E-value=3.2e-37 Score=251.24 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=137.1
Q ss_pred CceEEEEEccccee--------c-cCCCCcEEEEcCCCCCCCCchHHHHHHHHcC-cchHHHHhhccccCCCCCCCCCcE
Q 029637 13 KTSLKISKGDISRW--------C-VDRSSDAIVSPTNEILLLGGFTAAAIHEAAG-PDLQKACYQIPEAQPRVRCPPGEA 82 (190)
Q Consensus 13 ~~~i~i~~GdI~~~--------~-~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G-~~l~~~~~~~~~~~~~~~~~~G~~ 82 (190)
+.+|++++||||++ . +++++||||||+|+.+.++||+++||++++| +.++++|+++.+ .+.+++|++
T Consensus 44 ~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~~gGGVd~AI~raaGg~~l~~ec~~~~~---~g~~~~G~a 120 (284)
T 1njr_A 44 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLG---GRYHTVGSA 120 (284)
T ss_dssp -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCCCCSSHHHHHHHHHTSHHHHHHHHHHTT---TSCCCTTCC
T ss_pred CCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCCCCchHHHHHHHhhCcHHHHHHHHHHHh---cCCCCCCeE
Confidence 56899999999998 0 1123599999999999999999999999975 677899998752 357999999
Q ss_pred EEccCC----------CCCCCeEEEEeCCccCCCC---------ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCC
Q 029637 83 RITPGF----------KLPVSHVIHTVGPVFNFHC---------NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 143 (190)
Q Consensus 83 ~~t~~~----------~l~~~~IiH~v~P~~~~~~---------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g 143 (190)
++|+++ +|+|+||||+++|.|.++. .+.+.|++||+++|+.| +++++|||||+||||++|
T Consensus 121 ~iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G 199 (284)
T 1njr_A 121 TVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAG 199 (284)
T ss_dssp EEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTC
T ss_pred EEEECCcccccccchhcCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCC
Confidence 999999 9999999999999998652 13588999999999999 999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhcCC-------CeEEEEecChHHHHHH
Q 029637 144 YPPDEAATIAISTVKEFANDF-------KEVHFILFTDDIYNVW 180 (190)
Q Consensus 144 ~p~~~~a~~~l~~i~~~~~~l-------~~V~~v~~~~~~~~~f 180 (190)
||++++|++|++++++|+... +.|+||.+ +..|+.|
T Consensus 200 ~P~~~aA~i~~~av~~f~~~~~~s~~~~~~vi~~~~-~~~~~~~ 242 (284)
T 1njr_A 200 VPPIISCKSMAFALRLYMAGDHISKELKNVLIMYYL-QYPFEPF 242 (284)
T ss_dssp CCHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHT-TCCCGGG
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcccccceEEEEEEC-HHHHHHH
Confidence 999999999999999998631 34566655 4445444
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=100.00 E-value=7.2e-36 Score=256.92 Aligned_cols=156 Identities=20% Similarity=0.253 Sum_probs=140.4
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~ 92 (190)
-..++|++||||+.++ |||||++|+.+.+||||++||++++|+++.++ .+++|++++|.++ .
T Consensus 343 APsfrIIRgDITk~~v----DAIVNAANtsL~gGgGVdGAIhraaG~~ll~~-----------~~~tG~AkIT~g~---a 404 (670)
T 4gua_A 343 APSYRTKRENIADCQE----EAVVNAANPLGRPGEGVCRAIYKRWPTSFTDS-----------ATETGTARMTVCL---G 404 (670)
T ss_dssp CCCEEEECSCGGGCCS----SEEEEECCTTCCCCSSHHHHHHHHCGGGGTTC-----------CCCTTCEEEEEET---T
T ss_pred CcceeEEecccccccc----CEEEeCCCCCCCCcCCHhHHHHHHhhHHHhcC-----------CCCcceEEEecCC---C
Confidence 4579999999999886 99999999999999999999999999988642 5789999999999 5
Q ss_pred CeEEEEeCCccCCCCCh--HHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCC-eEEE
Q 029637 93 SHVIHTVGPVFNFHCNP--EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFK-EVHF 169 (190)
Q Consensus 93 ~~IiH~v~P~~~~~~~~--~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~-~V~~ 169 (190)
|||||+|+|.|+++.+. .+.|++||+++|++|.+++++|||||+||||++|||++ .++++++++.+|+++.+ +|.+
T Consensus 405 KyIIHtVGPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~I 483 (670)
T 4gua_A 405 KKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVTI 483 (670)
T ss_dssp EEEEEECCCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEEE
T ss_pred ceEEEcCCCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999988743 36899999999999999999999999999999999987 57999999999998654 8999
Q ss_pred EecChHHHHHHHHHHHHH
Q 029637 170 ILFTDDIYNVWLKKAKEL 187 (190)
Q Consensus 170 v~~~~~~~~~f~~~~~~~ 187 (190)
++||++.-..++..++..
T Consensus 484 vcfDKkwe~~Ik~ai~~r 501 (670)
T 4gua_A 484 YCLDKKWKERIDAALQLK 501 (670)
T ss_dssp ECSCHHHHHHHHHHHHHH
T ss_pred EEecChHHHHHHHHHHHH
Confidence 999998888887776643
No 20
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.97 E-value=2.7e-30 Score=195.07 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=118.5
Q ss_pred eeCCCceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCC
Q 029637 9 SFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGF 88 (190)
Q Consensus 9 ~~~~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~ 88 (190)
+++++.+|++++|||++.+ .+|+|||++|+.+.+++|++++|++++| ++ .+|++- .+++|++.+|+++
T Consensus 15 ~~~~~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~GgGVa~ai~~~~p-~~-~e~~~~-------~~~~G~a~it~~~ 82 (160)
T 2jyc_A 15 EDPEGSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKFG-GV-QELLNQ-------QKKSGEVAVLKRD 82 (160)
T ss_dssp CCCCSCSEEEEESCSSSSC---SSCEEEEEECTTCCCCSSTHHHHHHHHC-CH-HHHHHH-------CCCTTCEEEEEET
T ss_pred ccCCCceEEEEeCcCCCCC---CCCEEEEccCCcCCCCCcHHHHHHHHCh-HH-HHHhcc-------CCCCCcEEEEecC
Confidence 3566889999999999875 1499999999999999999999999995 44 577652 6899999999985
Q ss_pred CCCCCeEEEEeCCc-cCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHH
Q 029637 89 KLPVSHVIHTVGPV-FNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 159 (190)
Q Consensus 89 ~l~~~~IiH~v~P~-~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~ 159 (190)
.+||||+++|. |.. ..+.+.|++||+++++.|.+++++|||||.||||++|+|++++++++.+++.+
T Consensus 83 ---~~~Vih~vg~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~ 150 (160)
T 2jyc_A 83 ---GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 150 (160)
T ss_dssp ---TEEEEEEECSSSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTT
T ss_pred ---CcEEEEEecCCCCCC-CChHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 69999999998 654 45679999999999999999999999999999999999999999998877653
No 21
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.97 E-value=7.5e-30 Score=190.74 Aligned_cols=141 Identities=12% Similarity=0.157 Sum_probs=120.3
Q ss_pred CCceEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 029637 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (190)
Q Consensus 12 ~~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~ 91 (190)
++.+|++++|||++.+ .+|+|||++|+.+.+++|++.+|++++ +++ .+|++ +.+++|++.+|+++
T Consensus 7 ~~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~G~Gva~ai~~~~-p~~-~~~~~-------~~~~~G~a~it~~~--- 71 (149)
T 2eee_A 7 GGSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKF-GGV-QELLN-------QQKKSGEVAVLKRD--- 71 (149)
T ss_dssp SSCCCEEECSCSSSSC---SSCEEEEEEETTCCCCSTTHHHHHHHT-CCH-HHHHT-------TCCCTTCEEEEESS---
T ss_pred CCeeEEEEecccccCC---CCcEEEEEeCCCCCcCCcHHHHHHHHC-cHH-HHHhc-------ccCCCccEEEEEcC---
Confidence 5678999999999975 149999999999999999999999999 455 56764 26899999999985
Q ss_pred CCeEEEEeCCc-cCCCCChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEE
Q 029637 92 VSHVIHTVGPV-FNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFI 170 (190)
Q Consensus 92 ~~~IiH~v~P~-~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v 170 (190)
++||||+++|. |.. ..+.+.|++||+++++.|.+++++|||||.||||++|+|++++++++.+++.+ . .|.++
T Consensus 72 ~~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~~----~-~i~v~ 145 (149)
T 2eee_A 72 GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA----T-DIKIT 145 (149)
T ss_dssp SSEEEEEEEESSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHTT----C-CCEEE
T ss_pred CCEEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhcc----C-CceEE
Confidence 69999999998 655 34678999999999999999999999999999999999999999998776553 2 35555
Q ss_pred ecC
Q 029637 171 LFT 173 (190)
Q Consensus 171 ~~~ 173 (190)
+|+
T Consensus 146 Vy~ 148 (149)
T 2eee_A 146 VYT 148 (149)
T ss_dssp EEC
T ss_pred EEe
Confidence 553
No 22
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.95 E-value=2.8e-27 Score=178.43 Aligned_cols=137 Identities=16% Similarity=0.087 Sum_probs=114.5
Q ss_pred eEEEEEcccceeccCCCCcEEEEcCCCCCCCCchHHHHHHHHcCcchHHHHhhccccCCCCCCCCCcEEEccCCCCCCCe
Q 029637 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (190)
Q Consensus 15 ~i~i~~GdI~~~~~~~~~d~IVn~~n~~~~~~~gv~~ai~~~~G~~l~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~ 94 (190)
.|++++|||++... .++|+|||++|+.+.+++|++.+|++++ +++.+++++..+. .+.+++|++.+|+++. .+|
T Consensus 5 ~i~~v~GDit~~~~-~~~daIvn~~N~~~~~G~Gva~ai~~~~-p~~~~~~~~~~~~--~~~~~~G~~~i~~~~~--~~~ 78 (158)
T 2fg1_A 5 EILYIKGDATAPIG-SGVKVITHICNDIGGWGKGFVLALSKKW-KMPEEAYRQWYKS--QEEFTLGAVQFVNVEN--KLY 78 (158)
T ss_dssp CCEEEESCTTSCCS-SSCEEEEEEEETTCCCCSTHHHHHHHHC-SHHHHHHHHHHHH--TSSCSTTCEEEEEEET--TEE
T ss_pred EEEEEecccCCCCC-CCCeEEEEEecCCCCcCccHHHHHHHHC-ChHHHHHHHHHhh--ccCcCCccEEEEecCC--CeE
Confidence 68999999998321 1349999999999999999999999999 7887776664432 2478999999999842 399
Q ss_pred EEEEeCCc-cCCCC-C----hHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHH
Q 029637 95 VIHTVGPV-FNFHC-N----PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 158 (190)
Q Consensus 95 IiH~v~P~-~~~~~-~----~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~ 158 (190)
|||+++|. |..+. . ..+.|++||+++++.|.+++. ||+||.||||++|+|++++++++.+.+.
T Consensus 79 Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l~ 147 (158)
T 2fg1_A 79 VANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEELI 147 (158)
T ss_dssp EEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred EEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHhc
Confidence 99999998 76443 1 578999999999999999997 9999999999999999999987666543
No 23
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=99.22 E-value=1.8e-11 Score=99.02 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=78.9
Q ss_pred EEEEeCCccCCCC------ChHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHH---HHhcCCC
Q 029637 95 VIHTVGPVFNFHC------NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK---EFANDFK 165 (190)
Q Consensus 95 IiH~v~P~~~~~~------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~---~~~~~l~ 165 (190)
+|.++.|+|.... ...+.|+..++.+|..|.++|.++|+||++|||.||.|++++|+++.+.+. +|...++
T Consensus 172 vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~~~~f~~~f~ 251 (277)
T 3sig_A 172 FLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRFA 251 (277)
T ss_dssp EEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHSTTCTTTTTCS
T ss_pred EEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhhcchhcCCce
Confidence 7788888774211 124779999999999999999999999999999999999999999999998 4666899
Q ss_pred eEEEEecCh----HHHHHHHHHHHH
Q 029637 166 EVHFILFTD----DIYNVWLKKAKE 186 (190)
Q Consensus 166 ~V~~v~~~~----~~~~~f~~~~~~ 186 (190)
+|.|.++|+ ..+++|.+.|..
T Consensus 252 ~VvFAv~d~~~~~~n~~~F~~~F~~ 276 (277)
T 3sig_A 252 HVVFAVWDTAPGAPRHAAFARRFGS 276 (277)
T ss_dssp EEEEECCCCSTTCHHHHHHHHHC--
T ss_pred EEEEEEecCCCcchHHHHHHHHHhh
Confidence 999999997 699999998865
No 24
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=63.71 E-value=9.5 Score=29.43 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 162 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~ 162 (190)
...+++++..|.+.|++.+++=++||+++.=|.+++ ..+++-+.+++.
T Consensus 33 ~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev-~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 33 AAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDEL-AALIEIITDVVE 80 (227)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHH-HHHHHHHHHHHH
Confidence 467788888888999999999999999999999988 455566666654
No 25
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=51.26 E-value=16 Score=28.14 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
.+.++++++.|.+.|++.+.+=++||.++.=|++++... ++-+++++
T Consensus 36 ~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~L-m~L~~~~l 82 (225)
T 3ugs_B 36 VKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFI-FELLDRCL 82 (225)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHH-HHHHHHHH
Confidence 355666777777899999999999999999999888654 44445554
No 26
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=46.26 E-value=23 Score=27.87 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 113 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 113 L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
=...+++++..|.+.|++.+.+=++||.++.=|++++...
T Consensus 53 G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~L 92 (256)
T 4h8e_A 53 GMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYI 92 (256)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHH
Confidence 3456777788888899999999999999999999887654
No 27
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=46.00 E-value=47 Score=24.19 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=27.1
Q ss_pred CCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecc
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (190)
.++.|||++++.|.... ..+.-.....++++.+.+.+.+.+.+-.
T Consensus 67 ~~d~vi~~a~~~~~~~~-~~~~n~~~~~~l~~~~~~~~~~~~v~~S 111 (227)
T 3dhn_A 67 GADAVISAFNPGWNNPD-IYDETIKVYLTIIDGVKKAGVNRFLMVG 111 (227)
T ss_dssp TCSEEEECCCC-------CCSHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEeCcCCCCChh-HHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 47899999998765432 1112244567788888888887776643
No 28
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=40.46 E-value=22 Score=27.94 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 112 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 112 ~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
.=...+++++..|.+.|++.+.+=++||.++.=|++++... ++-+++++
T Consensus 45 ~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~L-m~L~~~~l 93 (253)
T 3sgv_B 45 AGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL-MELFVWAL 93 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHH-HHHHHTTH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHH-HHHHHHHH
Confidence 33466777888888999999999999999999999887554 33334443
No 29
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=36.66 E-value=36 Score=27.15 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 113 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 113 L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
=.+.+++++..|.+.|++.+++=++||.++.=|.+++...
T Consensus 84 G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~L 123 (284)
T 2vg3_A 84 GEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFL 123 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHH
Confidence 3477888888889999999999999999999999877554
No 30
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=35.50 E-value=28 Score=27.09 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
.+.+++++..|.+.|++.+++=++||.++.=|++++...
T Consensus 45 ~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~L 83 (245)
T 2d2r_A 45 VKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFL 83 (245)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEECC----------CHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHH
Confidence 467888888889999999999999999999998776544
No 31
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Probab=33.01 E-value=1.7e+02 Score=25.14 Aligned_cols=53 Identities=9% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCceeee-----cccccCCCCCChHHHHHHHHHHHHHHhc
Q 029637 110 EDILRSAYKNCLSVGKANNIQYIAF-----PAISCGVSQYPPDEAATIAISTVKEFAN 162 (190)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~-----P~lgtG~~g~p~~~~a~~~l~~i~~~~~ 162 (190)
+..++..++++++.+.+.|+..+=+ |.......|+|.+...+.+.++++++.+
T Consensus 195 ~~~~~~~~~e~l~d~a~dgV~Y~ElR~~f~p~~~~~g~~l~~~~vv~~v~~~~~~~~~ 252 (508)
T 3lgd_A 195 APVFRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVE 252 (508)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEEEECCCCCBCTTSCBCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCceEEEEeecCchHhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999876643 3344433569999999999999998875
No 32
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=31.89 E-value=37 Score=26.59 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHH
Q 029637 114 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 152 (190)
Q Consensus 114 ~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~ 152 (190)
.+.+++++..|.+.|++.+++=++||.++.=|.+++...
T Consensus 47 ~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~L 85 (253)
T 3qas_B 47 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL 85 (253)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCC-------------
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHH
Confidence 477888888888999999999999999999888777533
No 33
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=31.18 E-value=1.2e+02 Score=23.01 Aligned_cols=61 Identities=10% Similarity=-0.024 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEec
Q 029637 111 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILF 172 (190)
Q Consensus 111 ~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~ 172 (190)
+...+.+++++..|.+.|.+.|..|..|. ..+.+.++.-+.+.+.+++..+..++|++++-
T Consensus 109 ~~~~~~~~~~i~~A~~lG~~~v~~~~~g~-~~~~~~~~~~~~~~~~l~~l~~~a~~v~l~lE 169 (290)
T 2zvr_A 109 KKAIERVVKHTEVAGMFGALVIIGLVRGR-REGRSYEETEELFIESMKRLLELTEHAKFVIE 169 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEESGGGCC-CTTSCHHHHHHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCCCC-CCCcCHHHHHHHHHHHHHHHHHHhccCEEEEE
Confidence 45567889999999999999998554332 23445666667777777766542222666553
No 34
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=30.59 E-value=1.2e+02 Score=20.45 Aligned_cols=25 Identities=0% Similarity=-0.063 Sum_probs=16.5
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+.|.+.+..+.+.+.+||+
T Consensus 72 vk~~vyl~d~~~~~~~n~~~~~~f~ 96 (128)
T 1qu9_A 72 VKTTVFVKDLNDFATVNATYEAFFT 96 (128)
T ss_dssp EEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred EEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 3455555666777777777777764
No 35
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=28.94 E-value=24 Score=31.44 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=24.8
Q ss_pred CceEEEEEcccceeccCCCCcEEEEcCCCCC
Q 029637 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEIL 43 (190)
Q Consensus 13 ~~~i~i~~GdI~~~~~~~~~d~IVn~~n~~~ 43 (190)
+-+|+|++||+++++..+++|+||.=-=..+
T Consensus 410 ~dkVtVI~gd~eev~LPEKVDIIVSEwMG~f 440 (637)
T 4gqb_A 410 GSQVTVVSSDMREWVAPEKADIIVSELLGSF 440 (637)
T ss_dssp GGGEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCeEEEEeCcceeccCCcccCEEEEEcCccc
Confidence 4579999999999887778999998743333
No 36
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=28.69 E-value=62 Score=23.39 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeec
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 135 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P 135 (190)
.++.|||++++.|.... ...-....+++++.+.+.+ +.+.+.
T Consensus 62 ~~d~vi~~ag~~~~~~~--~~~n~~~~~~l~~a~~~~~-~~~v~~ 103 (224)
T 3h2s_A 62 SVDAVVDALSVPWGSGR--GYLHLDFATHLVSLLRNSD-TLAVFI 103 (224)
T ss_dssp TCSEEEECCCCCTTSSC--THHHHHHHHHHHHTCTTCC-CEEEEE
T ss_pred cCCEEEECCccCCCcch--hhHHHHHHHHHHHHHHHcC-CcEEEE
Confidence 47999999999875432 2334456688888888888 666654
No 37
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=28.36 E-value=1.1e+02 Score=20.61 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=16.9
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+.|.+.+..+.+.+.++|+
T Consensus 72 vk~~vyl~d~~~~~~~n~v~~~~f~ 96 (125)
T 3l7q_A 72 VKTTCFLSDIDDFVPFNEVYATAFK 96 (125)
T ss_dssp EEEEEEESCGGGHHHHHHHHHTTCC
T ss_pred EEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 3455555666677778777777775
No 38
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=28.18 E-value=1.8e+02 Score=21.50 Aligned_cols=52 Identities=6% Similarity=-0.006 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc
Q 029637 111 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 162 (190)
Q Consensus 111 ~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~ 162 (190)
+.....++.++..|.+.|.+.|.++.=.......+.+..-+.+.+.++...+
T Consensus 79 ~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~ 130 (275)
T 3qc0_A 79 EKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLP 130 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 4455778899999999999999887411111234566666666666665543
No 39
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=27.72 E-value=1.4e+02 Score=20.30 Aligned_cols=25 Identities=8% Similarity=-0.134 Sum_probs=17.2
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+.+.+.+..+.+.+.++|+
T Consensus 69 vk~tvyl~d~~df~~~n~v~~~~f~ 93 (128)
T 3kjj_A 69 LDAVIYLRDMGDYAEMNGVWDAWVA 93 (128)
T ss_dssp EEEEEEESCGGGHHHHHHHHHHHSC
T ss_pred EEEEEEECCHHHHHHHHHHHHHHhC
Confidence 3455555666777888888877775
No 40
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=27.19 E-value=1.9e+02 Score=21.39 Aligned_cols=51 Identities=10% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc
Q 029637 111 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 162 (190)
Q Consensus 111 ~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~ 162 (190)
+...+.+++++..|.+.|.+.|.+.. +....+++.++.-+.+.+.++...+
T Consensus 80 ~~~~~~~~~~i~~a~~lG~~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~ 130 (278)
T 1i60_A 80 NEIITEFKGMMETCKTLGVKYVVAVP-LVTEQKIVKEEIKKSSVDVLTELSD 130 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEC-CBCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEec-CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999998832 2222246767776777777666553
No 41
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=26.96 E-value=1.5e+02 Score=19.94 Aligned_cols=24 Identities=0% Similarity=-0.018 Sum_probs=15.3
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029637 166 EVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 166 ~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
++.+.+.|.+.+..+.+.+.++|+
T Consensus 72 k~~vyl~d~~~~~~~n~~~~~~f~ 95 (124)
T 1qd9_A 72 KATVFIADMEQFAEVNEVYGQYFD 95 (124)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHSS
T ss_pred EEEEEEcChHHHHHHHHHHHHHcC
Confidence 444555566677777777777764
No 42
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=26.94 E-value=1.4e+02 Score=21.05 Aligned_cols=25 Identities=0% Similarity=-0.041 Sum_probs=16.9
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+.|.+.+..+.+.+.++|+
T Consensus 96 vk~tvyl~d~~df~~~n~v~~~~f~ 120 (153)
T 3vcz_A 96 VKMTVFVKDLNDFGTVNEVYGNFFD 120 (153)
T ss_dssp EEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred EEEEEEEcCchHHHHHHHHHHHHhC
Confidence 3455555666777777777777774
No 43
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=25.86 E-value=1.5e+02 Score=19.90 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=17.0
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+.|.+.+..+.+.+.+||+
T Consensus 75 vk~~vyl~d~~~~~~~~~v~~~~f~ 99 (127)
T 3r0p_A 75 VKLNVYLTDLANFPIVNEVMGQYFQ 99 (127)
T ss_dssp EEEEEEESCGGGHHHHHHHHHHHCC
T ss_pred EEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 3455555666677777777777775
No 44
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=25.61 E-value=1.7e+02 Score=20.26 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=15.9
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029637 166 EVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 166 ~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
++.+.+.|.+.+..+.+.+.+||+
T Consensus 86 k~tvyl~d~~df~~~n~v~~~~f~ 109 (140)
T 2b33_A 86 KVTVFTTSMDYFQRVNEVYSRYFG 109 (140)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHT
T ss_pred EEEEEECCchhHHHHHHHHHHHCC
Confidence 444555666677777777777774
No 45
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=24.33 E-value=1.4e+02 Score=23.92 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCcee--ee-cccccCCCCCChHHHHHHHHHHHHHHhc
Q 029637 109 PEDILRSAYKNCLSVGKANNIQYI--AF-PAISCGVSQYPPDEAATIAISTVKEFAN 162 (190)
Q Consensus 109 ~~~~L~~~~~~~L~~a~~~~~~sI--a~-P~lgtG~~g~p~~~~a~~~l~~i~~~~~ 162 (190)
.++.++...+++++.+.+.|+..+ -+ |-..++ .|+|.+...+.++++++++.+
T Consensus 72 t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~~-~gl~~~~~v~~v~~~~~~a~~ 127 (326)
T 3pao_A 72 TEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTD-RGIPFEVVLAGIRAALRDGEK 127 (326)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHHT-TTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEEChHHhcc-CCCCHHHHHHHHHHHHHHHHh
Confidence 468899999999999999998775 33 555544 579999999999999988865
No 46
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=24.09 E-value=30 Score=27.04 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHH
Q 029637 113 LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAA 150 (190)
Q Consensus 113 L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a 150 (190)
=...+++++..|.+.|++.+++=++||.++.=|++++.
T Consensus 49 G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~ 86 (249)
T 1f75_A 49 GMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVN 86 (249)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEC------------C
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHH
Confidence 35678888888889999999999999999999987764
No 47
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=23.19 E-value=1.7e+02 Score=22.60 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCccCCCCChHH-HH---HHHHHHHHHHHHHcC-Cceeeeccc
Q 029637 91 PVSHVIHTVGPVFNFHCNPED-IL---RSAYKNCLSVGKANN-IQYIAFPAI 137 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~-~L---~~~~~~~L~~a~~~~-~~sIa~P~l 137 (190)
.++.|||+++|.-....+..+ .+ -....++++.|.+.+ .+.+.+..=
T Consensus 77 ~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS 128 (337)
T 2c29_D 77 GCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS 128 (337)
T ss_dssp TCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred CCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence 368999999875211112221 22 244577788777766 777776543
No 48
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=22.95 E-value=81 Score=22.58 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=28.3
Q ss_pred CCCeEEEEeCCccCCCCChHHHHHHHHHHHHHHHHHcCCceeeecc
Q 029637 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (190)
.++.|||++++..... ..-....+++++.+.+.+...+.+..
T Consensus 61 ~~d~vi~~ag~~~~~~----~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 61 DQNVVVDAYGISPDEA----EKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp TCSEEEECCCSSTTTT----TSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred CCCEEEECCcCCcccc----chHHHHHHHHHHHHHhcCCceEEEEe
Confidence 4799999999854321 22345667778888777777776654
No 49
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=22.60 E-value=2.4e+02 Score=20.99 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc
Q 029637 110 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 162 (190)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~ 162 (190)
.+...+.+++++..|.+.|.+.|.++. | ...+.+.++.-+.+.+.+++..+
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~~-g-~~~~~~~~~~~~~~~~~l~~l~~ 138 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAMS-G-ITEGLDRKACEETFIENFRYAAD 138 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCB-C-BCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcc-C-CCCCCCHHHHHHHHHHHHHHHHH
Confidence 455667789999999999999998842 1 22345666677777777666654
No 50
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=22.56 E-value=71 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=21.9
Q ss_pred ceEEEEEcccceeccCCCCcEEEEcC
Q 029637 14 TSLKISKGDISRWCVDRSSDAIVSPT 39 (190)
Q Consensus 14 ~~i~i~~GdI~~~~~~~~~d~IVn~~ 39 (190)
.+|.+++||+++++..+++|+||.--
T Consensus 132 ~~i~~i~~~~~~~~lpe~~DvivsE~ 157 (376)
T 4hc4_A 132 DRVHVLPGPVETVELPEQVDAIVSEW 157 (376)
T ss_dssp TTEEEEESCTTTCCCSSCEEEEECCC
T ss_pred ceEEEEeeeeeeecCCccccEEEeec
Confidence 46999999999988777899999743
No 51
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=22.33 E-value=2.6e+02 Score=21.48 Aligned_cols=49 Identities=8% Similarity=0.145 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhc
Q 029637 110 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 162 (190)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~ 162 (190)
.+...+.++.++..|.+.|.+.|.+|.... . +.+...+.+.+.++...+
T Consensus 103 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~---~-~~~~~~~~~~~~l~~l~~ 151 (303)
T 3l23_A 103 TPKIMEYWKATAADHAKLGCKYLIQPMMPT---I-TTHDEAKLVCDIFNQASD 151 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECSCCC---C-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCC---C-CCHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999985322 1 234444555565555543
No 52
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=22.30 E-value=1.7e+02 Score=22.37 Aligned_cols=46 Identities=17% Similarity=0.061 Sum_probs=29.7
Q ss_pred CCCeEEEEeCCccCCCC-ChHHHHHHHHHHHHHHHHHcCCceeeecc
Q 029637 91 PVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPA 136 (190)
Q Consensus 91 ~~~~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 136 (190)
.++.|||++++...... .....=.....++++.|.+.+.+.+.+..
T Consensus 62 ~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 62 DVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp TCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 57999999987543311 11122234567888888888888776643
No 53
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=21.52 E-value=2.7e+02 Score=21.39 Aligned_cols=48 Identities=6% Similarity=0.131 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHh
Q 029637 110 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 161 (190)
Q Consensus 110 ~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~ 161 (190)
.+...+.++.++..|.+.|.+.|.+|.... . ..+...+.+.+.++...
T Consensus 109 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~---~-~~~~~~~~~~~~l~~l~ 156 (305)
T 3obe_A 109 MPKFDEFWKKATDIHAELGVSCMVQPSLPR---I-ENEDDAKVVSEIFNRAG 156 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEECCCCC---C-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeCCCCC---C-CCHHHHHHHHHHHHHHH
Confidence 356677899999999999999999984321 1 23344455555555544
No 54
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=21.39 E-value=1.8e+02 Score=19.65 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCceeeecccccCCCCCChHHHHHHHHHHHHHHhcCCCeEEEEecChHHHHHHHHHHHHHh
Q 029637 109 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELL 188 (190)
Q Consensus 109 ~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~~ 188 (190)
-.++.++++.|+.....+.|.. . +.+-++.+.+.|.+.+..+.+.+.++|
T Consensus 49 ~~~Q~~~~l~ni~~~L~~aG~~---------------~---------------~~vvk~~vyl~d~~d~~~~n~~~~~~f 98 (129)
T 1jd1_A 49 IADKAEQVIQNIKNVLEASNSS---------------L---------------DRVVKVNIFLADINHFAEFNSVYAKYF 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC---------------G---------------GGEEEEEEEESCGGGHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHcCCC---------------H---------------HHeEEEEEEEcChHHHHHHHHHHHHHc
Confidence 3567777777777666655421 1 122345556666777888888888877
Q ss_pred c
Q 029637 189 Q 189 (190)
Q Consensus 189 ~ 189 (190)
+
T Consensus 99 ~ 99 (129)
T 1jd1_A 99 N 99 (129)
T ss_dssp S
T ss_pred C
Confidence 5
No 55
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=21.38 E-value=1.2e+02 Score=21.08 Aligned_cols=24 Identities=4% Similarity=-0.010 Sum_probs=15.4
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029637 166 EVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 166 ~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
++.+.+.|.+.+..+.+.+.+||+
T Consensus 91 k~tvyl~d~~df~~~n~v~~~~f~ 114 (143)
T 3k0t_A 91 KLNIFLTDLGHFAKVNEIMGSYFS 114 (143)
T ss_dssp EEEEEESCGGGHHHHHHHHTTTCC
T ss_pred EEEEEEcChHHHHHHHHHHHHHcC
Confidence 445555666677777777776664
No 56
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=20.93 E-value=1.9e+02 Score=19.24 Aligned_cols=24 Identities=4% Similarity=0.002 Sum_probs=15.6
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029637 166 EVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 166 ~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
++.+.+.|.+.+..+.+.+.++|+
T Consensus 72 k~~vyl~d~~~~~~~~~~~~~~f~ 95 (124)
T 2cvl_A 72 QTTCFLADMEDFPGFNEVYARYFT 95 (124)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHCC
T ss_pred EEEEEEcChHHHHHHHHHHHHHcC
Confidence 444555566667777777777764
No 57
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=20.63 E-value=2e+02 Score=19.35 Aligned_cols=25 Identities=16% Similarity=-0.021 Sum_probs=17.3
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+.|.+.+..+.+...++|+
T Consensus 64 vk~~vyl~d~~df~~~n~v~~~~f~ 88 (126)
T 2ewc_A 64 VQMDCLFRDVWNIPVMEKMIKERFN 88 (126)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHST
T ss_pred EEEEEEECChhHHHHHHHHHHHHcC
Confidence 3455556666778888888877775
No 58
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=20.35 E-value=1.9e+02 Score=19.46 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=15.5
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029637 166 EVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 166 ~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
++.+.+.|.+.+..+.+.+.+||+
T Consensus 76 k~~vyl~d~~~~~~~n~~~~~~f~ 99 (128)
T 1x25_A 76 MAFVFLKDMNMFNDFNSVYAEYFK 99 (128)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHCC
T ss_pred EEEEEECCHHHHHHHHHHHHHHcC
Confidence 444555566677777777777764
No 59
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=20.06 E-value=2e+02 Score=20.13 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=17.2
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029637 165 KEVHFILFTDDIYNVWLKKAKELLQ 189 (190)
Q Consensus 165 ~~V~~v~~~~~~~~~f~~~~~~~~~ 189 (190)
-++.+.+.|.+.+..+.+.+.+||+
T Consensus 96 vk~tvyl~d~~df~~~n~v~~~~fg 120 (148)
T 3m1x_A 96 VKTTCLLADIKDFGVFNGIYAEAFG 120 (148)
T ss_dssp EEEEEEESCGGGHHHHHHHHHHHHT
T ss_pred EEEEEEECCHHHHHHHHHHHHHHhC
Confidence 3455556666777888888877774
Done!